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makemeso @ 341

Last change on this file since 341 was 341, checked in by aslmd, 13 years ago
MESOSCALE: tests pour faire marcher le modele en parallele sur la ferme. toujours infructueux... toutes les notes incluses et options explorees en commentaire. les options par defaut restent les memes en attendant. ajout de scripts pour compiler NETCDF et MPI. correction d un probleme de Registry et de makemeso pour les runs LES ancienne physique. ajout d un cas test LES phoenix.
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File size: 32.8 KB

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1	#! /bin/bash
2
3
4	##################################
5	# makemeso allows you to compile #
6	# WRF with modified LMD physics #
7	##################################
8
9	##############################
10	# Author: A. Spiga #
11	# New version : October 2008 #
12	# Last update : January 2009 #
13	# November 09 #
14	# January 11 #
15	##############################
16
17	###############################
18	#### Type makemeso -h for help
19	###############################
20
21
22
23	##############################################################################################
24	##############################################################################################
25	##############################################################################################
26	##############################################################################################
27
28	donotcompile=0
29	donotallow=0
30	config=''
31	donotcompilephys=0
32	justphys=0
33	debug=0
34	fresh_start=0
35	phys=""
36	scenario=""
37	while getopts "drc:njhgpfs:x" options; do
38	case $options in
39	d ) donotcompile=1;; ## just to check the compile folder
40	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
41	c ) config="${OPTARG}";; ## idealized cases
42	n ) donotcompilephys=1;; ## do not recompile physics
43	j ) justphys=1;; ## just compile LMD physics
44	g ) debug=1;; ## debug mode
45	p ) phys="newphys_";; ## with new physics
46	f ) fresh_start=1;; ## a fresh start
47	s ) scenario="${OPTARG}";; ## a specific scenario, you need a corresponding "mars_lmd_..."
48	x ) donotcompile=1;phys="nophys_";donotcompilephys=1;; ## a case with no LMD physics included
49	h ) echo "
50	# Use:
51	#
52	# makemeso ## basic use (real-case configuration)
53	#
54	# makemeso -d ## no compilation, just check the name of the compile folder
55	#
56	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
57	# makemeso -c les ## large-eddy simulations mode based on WRFV3
58	#
59	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
60	#
61	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
62	# makemeso -r < last ## basic use + skip questions + only known config
63	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
64	#
65	# makemeso -j ## just compile the LMD physics
66	#
67	# makemeso -g ## debug mode
68	#
69	# makemeso -h ## display options
70	#
71	# makemeso -p ## with new LMD physics
72	#
73	# makemeso -f ## fresh start [clean -a]
74	#
75	# makemeso -s storm ## a specific scenario, you need a corresponding mars_lmd_... (only for newphys)
76	#
77	# makemeso -x ## a case with no LMD physics included
78	" ; exit ;;
79	esac
80	done
81
82	#--------------
83	# talk w/ user
84	#--------------
85	echo '****************************************'
86	echo ' LMD Mesoscale Model Compiler. Welcome.'
87	echo '****************************************'
88	if [[ "${phys}" == "newphys_" ]]
89	then
90	echo '*********with new physics***********'
91	echo '****************************************'
92	fi
93	# computer
94	uname -a \| grep x86_64 > /dev/null
95	if [[ "$?" == 0 ]]
96	then
97	machine='64'
98	else
99	machine='32'
100	fi
101	# compiler
102	echo "Supported compiler options are "
103	echo " <1> pgf90"
104	echo " <2> g95"
105	echo " <3> pgf90 + mpi"
106	echo " <4> ifort"
107	echo " <5> ifort + mpi"
108	echo " <7> xlf + mpi (IBM AIX)"
109	echo "Your choice ?" ; read reply
110	case ${reply} in
111	1) compilo='pgf' ; numproc=1 ;;
112	2) compilo='g95' ; numproc=1 ;;
113	3) compilo='mpi'
114	if [[ "${WHERE_MPI}" = "" ]]
115	then
116	echo Please initialize the variable WHERE_MPI in your environnement
117	exit
118	fi
119	echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
120	4) compilo='ifort' ; numproc=1 ;;
121	5) compilo='mpifort' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
122	7) compilo='mpixlf' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
123	### for tests
124	99) compilo='gnu' ; numproc=1 ;;
125	*) echo not supported by this script ; exit ;;
126	esac
127	# dimensions
128	if [ ${donotcompile} -eq 0 ]
129	then
130	echo Grid points in longitude ? ; read lon
131	echo Grid points in latitude ? ; read lat
132	echo Number of vertical levels ? ; read level
133	fi
134	echo Number of domains ? ; read dom
135
136	###PB lecture dom si < last
137
138	case ${dom} in
139	1) single='_single' ;;
140	*) single='_nest' ;;
141	esac
142	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
143	then
144	single=''
145	fi
146
147	testflag=''
148	####
149	#testflag='_test'
150	####
151
152	conf_wrf="${config}${scenario}${phys}${compilo}_${machine}${single}${testflag}"
153	\rm what_folder 2> /dev/null
154	echo ${conf_wrf} > what_folder
155	if [ ${donotcompile} -eq 1 ]
156	then
157	#\rm what_folder 2> /dev/null
158	#echo '**********************'
159	#echo '*** Your folder is ...'
160	#echo '**********************'
161	#echo ${conf_wrf} \| tee what_folder
162	#cat what_folder
163	#echo ${conf_wrf} > what_folder
164	#echo ${reply} > what_compilo
165	#echo ${numproc} > what_numproc
166	if [[ "${phys}" != "nophys_" ]]
167	then
168	exit
169	fi
170	else
171	echo Number of tracers ? ; read tra
172	if [ ${tra} -eq 0 ]
173	then
174	tra=1
175	fi
176	if [[ "${phys}" == "newphys_" ]]
177	then
178	echo "How many types of scatterer are you using ? 1 [dust] or 2 [dust + water ice]" ; read scat
179	else
180	scat=1 ## dummy stuff
181	fi
182	fi
183	# folder
184	mkdir ${conf_wrf} 2> /dev/null
185	if [[ "$?" == 0 ]]
186	then
187	echo new folder ... link sources
188	if [[ "${phys}" == "newphys_" ]]
189	then
190	\rm copy_model_tmp > /dev/null 2> /dev/null
191	if [[ "${scenario}" == "" ]]
192	then
193	sed s+"mars_lmd"+"mars_lmd_new"+g SRC/SCRIPTS/copy_model > copy_model_tmp
194	else
195	echo SCENARIO ${scenario} DID YOU INCLUDE THE SPECIFIC folder ? ; read dummy
196	sed s+"mars_lmd"+"mars_lmd_new_${scenario}"+g SRC/SCRIPTS/copy_model > copy_model_tmp
197	if [[ "${config}" == "les" ]]
198	then
199	echo "NOT SUPPORTED, check options"
200	exit
201	fi
202	fi
203	if [[ "${config}" == "les" ]]
204	then
205	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g copy_model_tmp > yeah
206	mv yeah copy_model_tmp
207	fi
208	chmod 755 copy_model_tmp
209	./copy_model_tmp
210	\rm copy_model_tmp
211	mv zeWRFV2 ${conf_wrf}/WRFV2
212	cd ${conf_wrf}/WRFV2
213	if [[ "${scenario}" == "" ]]
214	then
215	ln -sf mars_lmd_new mars_lmd
216	else
217	ln -sf mars_lmd_new_${scenario} mars_lmd
218	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/Registry.EM mars_lmd_new_${scenario}/
219	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/*.inc mars_lmd_new_${scenario}/
220	cd Registry ; ln -sf ../mars_lmd_new_${scenario}/Registry.EM . ; cd ..
221	fi
222	#ln -sf meso_callkeys_newphys.h meso_callkeys.h
223	cd Registry ; Registry.bash ; cd ..
224	else
225	if [[ "${config}" == "les" ]]
226	then
227	### NB: With physics: LES folder // Without physics : LESnophys_ folder
228	### ---- because differences in 'modif' folder ----
229	sed s+"PWD/SRC/"+"PWD/SRC/LES$phys/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
230	else
231	cp SRC/SCRIPTS/copy_model copy_model_tmp
232	fi
233	chmod 755 copy_model_tmp
234	./copy_model_tmp
235	\rm copy_model_tmp
236	mv zeWRFV2 ${conf_wrf}/WRFV2
237	cd ${conf_wrf}/WRFV2
238	cd Registry ; Registry.bash ; cd ..
239	fi
240	#### sparadrap consequent a l'utilisation de copy_model pour les liens
241	#### -- car alors il manque fftpack
242	if [[ "${config}" == "les" ]]
243	then
244	if [[ "${phys}" == "nophys_" ]]
245	then
246	## voir ci-dessus pour le folder
247	cp ../../SRC/LES$phys/correcfft ./
248	else
249	cp ../../SRC/LES/correcfft ./
250	fi
251	./correcfft
252	\rm correcfft
253	fi
254	else
255	cd ${conf_wrf}/WRFV2
256	if [ ${fresh_start} -eq 1 ]
257	then
258	echo '*** FRESH START, I clean everything'
259	### clean the whole place
260	clean -a > /dev/null 2> /dev/null
261	### get a possibly modified registry !
262	if [[ "${scenario}" == "" ]]
263	then
264	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
265	fi
266	if [[ "${config}" == "les" ]]
267	then
268	cp ../../SRC/LES/WRFV2/Registry/Registry.EM Registry/
269	fi
270	### ensure the model will be recompiled from scratch with correct registry
271	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
272	# answer='y' ## a voir... pas si sur
273	# else
274	# if [[ "${phys}" != "nophys_" ]]
275	# then
276	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
277	# case ${answer} in
278	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
279	# *) answer='no' ;;
280	# esac
281	# fi
282	fi
283	fi
284
285	# summary
286	echo '**********************'
287	echo '*** Your folder is ...'
288	echo '**********************'
289	echo ${conf_wrf}
290	echo '**********************'
291	echo '****************************************'
292	echo so ...
293	echo your computer is ${machine} bits
294	echo ${compilo} is your compiler
295	if [[ "${compilo}" = "mpi" ]]
296	then
297	echo MPICH is in ${WHERE_MPI}
298	fi
299	echo you will use ${numproc} processors
300	echo you have ${lon} x points
301	echo ' '${lat} y points
302	echo ' '${level} z points
303	echo ' '${dom} domains
304	echo ' '${tra} tracers
305	if [[ "${phys}" == "newphys_" ]]
306	then
307	echo ' '${scat} scatterers
308	fi
309	echo '****************************************'
310	# save answer
311	\rm last 2> /dev/null
312	touch last
313	echo ${reply} >> last
314	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
315	then
316	echo ${numproc} >> last
317	fi
318	echo ${lon} >> last
319	echo ${lat} >> last
320	echo ${level} >> last
321	echo ${dom} >> last
322	echo ${tra} >> last
323	echo ${scat} >> last
324	#echo ${answer} >> last
325
326	#------------
327	# log files
328	#------------
329	\rm log_compile 2> /dev/null
330	\rm log_error 2> /dev/null
331
332	#-----------------
333	# configure WRF
334	#-----------------
335	mv configure.wrf configure.wrf.bak 2> /dev/null
336	########################
337	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
338
339	#### in this case options are different because for LES, WRFV3 is used
340	if [[ "${config}" == "les" ]]
341	then
342	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
343	fi
344
345	case ${conf_wrf_forall} in
346
347	#######LES-specific (WRFV3-based) -- previously in 'makeles'
348	#######
349
350	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
351	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
352	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
353	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
354	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
355	then
356	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
357	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
358	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
359	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
360	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
361	else
362	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
363	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
364	fi
365	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
366	### pas forcement necessaire ici mais OK
367	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
368	\rm conf > /dev/null ;;
369
370	lesmpifort_64) ## MPI (dm) 64 bits IFORT
371	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
372	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
373	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
374	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
375	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
376	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
377	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
378	\rm conf > /dev/null ;;
379
380	#######
381	#######LES-specific (WRFV3-based) -- previously in 'makeles'
382
383	#######TEST TEST
384	# GFORTRAN, 64 bits, no nesting
385	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
386	echo 15 \| configure > log_compile 2> log_error
387	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
388	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
389	#######TEST TEST
390	# PGF90, 32 bits, no nesting
391	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
392	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
393	# PGF90, 32 bits, nesting
394	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
395	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
396	# PGF90, 64 bits, no nesting
397	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
398	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
399	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
400	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
401	# PGF90, 64 bits, nesting
402	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
403	echo 4 \| configure > log_compile 2> log_error
404	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
405	# G95, 32 bits, no nesting
406	g95_32_single) echo 13 \| configure > log_compile 2> log_error
407	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
408	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
409	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
410	echo 14 \| configure > log_compile 2> log_error
411	##### marche pas ....
412	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
413	#sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
414	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
415	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
416	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
417	# IFORT, 64 bits, no nesting
418	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
419	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
420	## !!! NETCDF must be defined
421	sed s+"lio_grib_share"+"lio_grib_share -L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
422	mv -f yeah configure.wrf ;;
423	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
424	echo 9 \| configure > log_compile 2> log_error
425	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
426	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
427	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
428	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
429	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
430	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
431	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
432	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
433	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
434	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
435	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
436	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
437	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
438	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
439	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
440	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
441	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
442	### necessary even if mpi-selector is used (no need in makegcm though)
443	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
444	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
445	## !!! NETCDF must be defined
446	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
447	mv -f yeah configure.wrf
448	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
449	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
450	mv -f yeah configure.wrf ;;
451	# MPICH, 64 bits, no nesting / nesting
452	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
453	echo 3 \| configure > log_compile 2> log_error
454	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
455	### the following line is necessary because readtesassim has a line "use netcdf" in it!
456	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
457	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
458	#sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT -w -O3"+g > yeah
459	#\| sed s+"fastsse"+"fast"+g > yeah
460	mv -f yeah configure.wrf ;;
461	# #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
462	# ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
463	# ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
464	#sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah
465	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
466	#sed s+"-fastsse"+""+g configure.wrf > yeah
467	#sed s+"-fastsse"+"-fast"+g configure.wrf > yeah
468	#sed s+"-fastsse"+"-Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8 -Mfprelaxed"+g configure.wrf > yeah
469	#mv -f yeah configure.wrf ;;
470	# MPICH, 64 bits, OK with periodic BC but no positive definite
471	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
472	echo 2 \| configure > log_compile 2> log_error
473	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
474	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
475	mv -f yeah configure.wrf ;;
476	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
477	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
478	echo 3 \| configure > log_compile 2> log_error
479	sed -f mars.sed configure.wrf > yeah
480	mv -f yeah configure.wrf ;;
481	# ANYTHING ELSE
482	*) echo NO PRESETS ...
483	if [ ${donotallow} -eq 0 ]
484	then
485	configure
486	else
487	# problem when an input file is used
488	echo 'please cd to '$PWD' and type ./configure'
489	exit
490	fi ;;
491	esac
492	########################
493
494
495	### here a case structure would be great
496
497	if [[ "${phys}" == "newphys_" ]]
498	then
499	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
500	then
501	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
502	else
503	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
504	fi
505	mv -f yeah configure.wrf
506	fi
507
508	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment
509	then
510	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
511	mv -f yeah configure.wrf
512	fi
513
514	################
515	if [[ "${phys}" == "nophys_" ]]
516	then
517	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
518	then
519	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
520	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
521	else
522	### not tested yet but should be working
523	echo CAUTION CAUTION CAUTION NOT FULLY TESTED
524	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
525	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
526	fi
527	fi
528	################
529
530	if [ ${debug} -ne 0 ] # not working for xlf!
531	then
532	echo 'DEBUG DEBUG DEBUG DEBUG'
533	sed s+"#-g"+"-g -Ktrap=fp -Mbounds"+g configure.wrf > yeah
534	#sed s+"#-g"+"-g"+g configure.wrf > yeah
535	mv -f yeah configure.wrf
536	fi
537
538
539	##################################################
540	# compile physics
541	##################################################
542	if [ ${donotcompilephys} -eq 0 ]
543	then
544
545	cd mars_lmd/
546
547	# required size
548	#----------------
549	case ${numproc} in
550	1) divx=1 ; divy=1 ;;
551	2) divx=1 ; divy=2 ;;
552	4) divx=2 ; divy=2 ;;
553	6) divx=2 ; divy=3 ;;
554	8) divx=2 ; divy=4 ;;
555	12) divx=3 ; divy=4 ;;
556	16) divx=4 ; divy=4 ;;
557	20) divx=4 ; divy=5 ;;
558	24) divx=4 ; divy=6 ;;
559	32) divx=4 ; divy=8 ;;
560	64) divx=8 ; divy=8 ;;
561	128) divx=8 ; divy=16 ;;
562	*) echo not yet supported ; exit ;;
563	esac
564	physx=$(expr ${lon} - 1)
565	restex=$(expr ${physx} \% ${divx})
566	physy=$(expr ${lat} - 1)
567	restey=$(expr ${physy} \% ${divy})
568	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
569	then
570	echo nx-1 shall be divided by ${divx}
571	echo ny-1 shall be divided by ${divy}
572	exit
573	fi
574	physx=$(expr ${physx} \/ ${divx})
575	physy=$(expr ${physy} \/ ${divy})
576	physz=$(expr ${level} - 1)
577
578	# change this if you change num_soil_layers in WRF
579	# -- default is 10
580	if [[ "${phys}" == "newphys_" ]]
581	then
582	soilsize=18 ## nouvelle physique
583	else
584	soilsize=10
585	fi
586
587	# GCM environment variables
588	#--------------------------
589	export LMDGCM=$PWD
590	export LIBOGCM=$PWD/libo
591
592	# generate the appropriate dimphys
593	#---------------------------------
594	cd libf/phymars
595	\rm dimphys.h 2> /dev/null
596	if [[ "${phys}" == "newphys_" ]]
597	then
598	ln -sf meso_inc/meso_dimphys.h_ref .
599	fi
600	physize=$(expr ${physx} \* ${physy})
601	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
602	head -15 dimphys.h
603	### TEST new new phys
604	if [[ "${phys}" == "newphys_" ]]
605	then
606	touch gr_fi_dyn.F.lien
607	ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
608	###############################
609	\rm scatterers.h
610	cat << EOF > scatterers.h
611	!-----------------------------------------------------------------------
612	! INCLUDE 'scatterers.h'
613	!
614	! Number of kind of tracer radiative properties
615	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
616	! (ex: naerkind=1 if you use one dust mode without ice ...)
617	! (ex: naerkind=2 if you use one dust mode and active ice ...)
618	!-----------------------------------------------------------------------
619
620	integer, parameter :: naerkind=${scat}
621
622	!-----------------------------------------------------------------------
623	EOF
624	###############################
625	###############################
626	fi
627	###
628	###
629	cd ../..
630
631	# prepare for nesting
632	#---------------------
633	cd libf
634	duplicate${dom} 2> /dev/null
635	cd ..
636
637	# compile physics
638	#--------------------------
639	\rm libf/grid/dimensions.h 2> /dev/null
640	\rm -rf libo/* 2> /dev/null
641	echo 1. compiling LMD physics ...
642	echo compilation info in:
643	echo $PWD/libo/log_compile_phys
644
645	if [ ${debug} -ne 0 ]
646	then
647	echo 'DEBUG DEBUG DEBUG DEBUG'
648	nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
649	else
650	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
651	fi
652	echo ... done
653	# clean the duplicate routines
654	cd libf
655	duplicate1 2> /dev/null
656	cd ..
657
658	# merge LMD executables in one lib
659	#--------------------------------------
660	cd libo
661	mkdir temp
662	#cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp
663	cp -f LINUX/.a temp
664	cd temp
665	ar x libbibio.a
666	ar x libphymars.a
667	ar x libaeronomars.a
668	\rm *.a
669	ar r liblmd.a *
670	cp -f liblmd.a ..
671	cd ..
672	\rm -r temp
673	nm liblmd.a > liblmd_content
674	# finish merge
675	cd ..
676
677	# save a copy
678	#--------------
679	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}_${scat}
680	echo '****************************************'
681
682	# ok
683	#----
684	cd ..
685
686	# manage nest includes in module_lmd_driver.F
687	#----
688	cp call_meso_inifis$dom.inc call_meso_inifis.inc
689	cp call_meso_physiq$dom.inc call_meso_physiq.inc
690
691
692	fi
693	##################################################
694	# END compile physics
695	##################################################
696
697	#------------------
698	# compile WRF
699	#------------------
700	if [ ${justphys} -eq 0 ]
701	then
702
703	echo 2. compiling WRF dynamical core ...
704
705	if [[ "${phys}" == "nophys_" ]]
706	then
707	echo 'NO LMD PHYSICS included'
708	else
709	if [[ ! ( -f "call_meso_physiq.inc" ) ]]
710	then
711	echo 'did you compile the physics ? no call_meso_physiq.inc !'
712	exit
713	fi
714	fi
715
716	# be sure to compile with the most recent physics
717	touch phys/module_lmd_driver.F
718
719	# talk to user
720	echo '>>> compiling ... this may be long ... <<<'
721	echo check progress in:
722	echo $PWD/log_compile
723	echo check possible errors in:
724	echo $PWD/log_error
725
726	# compile ...
727	case ${config} in
728	'') compile em_real > log_compile 2> log_error
729	# save executables
730	cd main
731	if [[ -f real.exe ]]
732	then
733	echo 'Looks good ! real.exe is here...'
734	fi
735	if [[ -f wrf.exe ]]
736	then
737	echo 'Looks good ! wrf.exe is here...'
738	fi
739	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
740	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
741	cd .. ;;
742	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
743	echo '>>> YOUR CONFIG IS : '${config}
744	compile em_quarter_ss > log_compile 2> log_error
745	# save executables
746	cd main
747	if [[ -f ideal.exe ]]
748	then
749	echo 'Looks good ! ideal.exe is here...'
750	fi
751	if [[ -f wrf.exe ]]
752	then
753	echo 'Looks good ! wrf.exe is here...'
754	fi
755	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
756	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
757	cd .. ;;
758	'les') echo '>>> YOUR CONFIG IS : '${config}
759	mkdir 'test/em_les' 2> /dev/null
760	compile em_les > log_compile 2> log_error
761	# save executables
762	cd main
763	if [[ -f ideal.exe ]]
764	then
765	echo 'Looks good ! ideal.exe is here...'
766	fi
767	if [[ -f wrf.exe ]]
768	then
769	echo 'Looks good ! wrf.exe is here...'
770	fi
771	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
772	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
773	cd .. ;;
774	*) echo not supported... please use ; echo ideal les ; exit ;;
775	esac
776	echo '*****last lines from log_error*******'
777	tail -n 20 log_error
778	fi
779
780	# the end
781	echo '****************************************'
782	echo 'done.'
783	echo '****************************************'
784	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}
785	mv last ../../
786
787	# add here specific messages
788	if [[ "${dom}" != "1" ]]
789	then
790	nest=$(expr ${lon} + 4)
791	echo NB: in namelist.input, please set:
792	echo '
793	max_dom = '$dom'
794	s_we = 1,1,
795	e_we = '$lon','$nest',
796	s_sn = 1,1,
797	e_sn = '$lat','$nest',
798	s_vert = 1,1,
799	e_vert = '$level','$level','
800	fi
801

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