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makemeso @ 335

Last change on this file since 335 was 335, checked in by aslmd, 13 years ago
MESOSCALE: notes about trying to compile on the new planeto farm. in a nutshell, sequential runs are OK but not parallel runs.
Property svn:executable set to ``*
File size: 32.2 KB

Line
1	#! /bin/bash
2
3
4	##################################
5	# makemeso allows you to compile #
6	# WRF with modified LMD physics #
7	##################################
8
9	##############################
10	# Author: A. Spiga #
11	# New version : October 2008 #
12	# Last update : January 2009 #
13	# November 09 #
14	# January 11 #
15	##############################
16
17	###############################
18	#### Type makemeso -h for help
19	###############################
20
21
22
23	##############################################################################################
24	##############################################################################################
25	##############################################################################################
26	##############################################################################################
27
28	donotcompile=0
29	donotallow=0
30	config=''
31	donotcompilephys=0
32	justphys=0
33	debug=0
34	fresh_start=0
35	phys=""
36	scenario=""
37	while getopts "drc:njhgpfs:x" options; do
38	case $options in
39	d ) donotcompile=1;; ## just to check the compile folder
40	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
41	c ) config="${OPTARG}";; ## idealized cases
42	n ) donotcompilephys=1;; ## do not recompile physics
43	j ) justphys=1;; ## just compile LMD physics
44	g ) debug=1;; ## debug mode
45	p ) phys="newphys_";; ## with new physics
46	f ) fresh_start=1;; ## a fresh start
47	s ) scenario="${OPTARG}";; ## a specific scenario, you need a corresponding "mars_lmd_..."
48	x ) donotcompile=1;phys="nophys_";donotcompilephys=1;; ## a case with no LMD physics included
49	h ) echo "
50	# Use:
51	#
52	# makemeso ## basic use (real-case configuration)
53	#
54	# makemeso -d ## no compilation, just check the name of the compile folder
55	#
56	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
57	# makemeso -c les ## large-eddy simulations mode based on WRFV3
58	#
59	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
60	#
61	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
62	# makemeso -r < last ## basic use + skip questions + only known config
63	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
64	#
65	# makemeso -j ## just compile the LMD physics
66	#
67	# makemeso -g ## debug mode
68	#
69	# makemeso -h ## display options
70	#
71	# makemeso -p ## with new LMD physics
72	#
73	# makemeso -f ## fresh start [clean -a]
74	#
75	# makemeso -s storm ## a specific scenario, you need a corresponding mars_lmd_... (only for newphys)
76	#
77	# makemeso -x ## a case with no LMD physics included
78	" ; exit ;;
79	esac
80	done
81
82	#--------------
83	# talk w/ user
84	#--------------
85	echo '****************************************'
86	echo ' LMD Mesoscale Model Compiler. Welcome.'
87	echo '****************************************'
88	if [[ "${phys}" == "newphys_" ]]
89	then
90	echo '*********with new physics***********'
91	echo '****************************************'
92	fi
93	# computer
94	uname -a \| grep x86_64 > /dev/null
95	if [[ "$?" == 0 ]]
96	then
97	machine='64'
98	else
99	machine='32'
100	fi
101	# compiler
102	echo "Supported compiler options are "
103	echo " <1> pgf90"
104	echo " <2> g95"
105	echo " <3> pgf90 + mpi"
106	echo " <4> ifort"
107	echo " <5> ifort + mpi"
108	echo " <7> xlf + mpi (IBM AIX)"
109	echo "Your choice ?" ; read reply
110	case ${reply} in
111	1) compilo='pgf' ; numproc=1 ;;
112	2) compilo='g95' ; numproc=1 ;;
113	3) compilo='mpi'
114	if [[ "${WHERE_MPI}" = "" ]]
115	then
116	echo Please initialize the variable WHERE_MPI in your environnement
117	exit
118	fi
119	echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
120	4) compilo='ifort' ; numproc=1 ;;
121	5) compilo='mpifort' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
122	7) compilo='mpixlf' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
123	### for tests
124	99) compilo='gnu' ; numproc=1 ;;
125	*) echo not supported by this script ; exit ;;
126	esac
127	# dimensions
128	if [ ${donotcompile} -eq 0 ]
129	then
130	echo Grid points in longitude ? ; read lon
131	echo Grid points in latitude ? ; read lat
132	echo Number of vertical levels ? ; read level
133	fi
134	echo Number of domains ? ; read dom
135
136	###PB lecture dom si < last
137
138	case ${dom} in
139	1) single='_single' ;;
140	*) single='_nest' ;;
141	esac
142	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
143	then
144	single=''
145	fi
146
147	testflag=''
148	####
149	#testflag='_test'
150	####
151
152	conf_wrf="${config}${scenario}${phys}${compilo}_${machine}${single}${testflag}"
153	\rm what_folder 2> /dev/null
154	echo ${conf_wrf} > what_folder
155	if [ ${donotcompile} -eq 1 ]
156	then
157	#\rm what_folder 2> /dev/null
158	#echo '**********************'
159	#echo '*** Your folder is ...'
160	#echo '**********************'
161	#echo ${conf_wrf} \| tee what_folder
162	#cat what_folder
163	#echo ${conf_wrf} > what_folder
164	#echo ${reply} > what_compilo
165	#echo ${numproc} > what_numproc
166	if [[ "${phys}" != "nophys_" ]]
167	then
168	exit
169	fi
170	else
171	echo Number of tracers ? ; read tra
172	if [ ${tra} -eq 0 ]
173	then
174	tra=1
175	fi
176	if [[ "${phys}" == "newphys_" ]]
177	then
178	echo "How many types of scatterer are you using ? 1 [dust] or 2 [dust + water ice]" ; read scat
179	else
180	scat=1 ## dummy stuff
181	fi
182	fi
183	# folder
184	mkdir ${conf_wrf} 2> /dev/null
185	if [[ "$?" == 0 ]]
186	then
187	echo new folder ... link sources
188	if [[ "${phys}" == "newphys_" ]]
189	then
190	\rm copy_model_tmp > /dev/null 2> /dev/null
191	if [[ "${scenario}" == "" ]]
192	then
193	sed s+"mars_lmd"+"mars_lmd_new"+g SRC/SCRIPTS/copy_model > copy_model_tmp
194	else
195	echo SCENARIO ${scenario} DID YOU INCLUDE THE SPECIFIC folder ? ; read dummy
196	sed s+"mars_lmd"+"mars_lmd_new_${scenario}"+g SRC/SCRIPTS/copy_model > copy_model_tmp
197	if [[ "${config}" == "les" ]]
198	then
199	echo "NOT SUPPORTED, check options"
200	exit
201	fi
202	fi
203	if [[ "${config}" == "les" ]]
204	then
205	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g copy_model_tmp > yeah
206	mv yeah copy_model_tmp
207	fi
208	chmod 755 copy_model_tmp
209	./copy_model_tmp
210	\rm copy_model_tmp
211	mv zeWRFV2 ${conf_wrf}/WRFV2
212	cd ${conf_wrf}/WRFV2
213	if [[ "${scenario}" == "" ]]
214	then
215	ln -sf mars_lmd_new mars_lmd
216	else
217	ln -sf mars_lmd_new_${scenario} mars_lmd
218	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/Registry.EM mars_lmd_new_${scenario}/
219	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/*.inc mars_lmd_new_${scenario}/
220	cd Registry ; ln -sf ../mars_lmd_new_${scenario}/Registry.EM . ; cd ..
221	fi
222	#ln -sf meso_callkeys_newphys.h meso_callkeys.h
223	cd Registry ; Registry.bash ; cd ..
224	else
225	if [[ "${config}" == "les" ]]
226	then
227	### NB: With physics: LES folder // Without physics : LESnophys_ folder
228	### ---- because differences in 'modif' folder ----
229	sed s+"PWD/SRC/"+"PWD/SRC/LES$phys/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
230	else
231	cp SRC/SCRIPTS/copy_model copy_model_tmp
232	fi
233	chmod 755 copy_model_tmp
234	./copy_model_tmp
235	\rm copy_model_tmp
236	mv zeWRFV2 ${conf_wrf}/WRFV2
237	cd ${conf_wrf}/WRFV2
238	cd Registry ; Registry.bash ; cd ..
239	fi
240	#### sparadrap consequent a l'utilisation de copy_model pour les liens
241	#### -- car alors il manque fftpack
242	if [[ "${config}" == "les" ]]
243	then
244	if [[ "${phys}" == "nophys_" ]]
245	then
246	## voir ci-dessus pour le folder
247	cp ../../SRC/LES$phys/correcfft ./
248	else
249	cp ../../SRC/LES/correcfft ./
250	fi
251	./correcfft
252	\rm correcfft
253	fi
254	else
255	cd ${conf_wrf}/WRFV2
256	if [ ${fresh_start} -eq 1 ]
257	then
258	echo '*** FRESH START, I clean everything'
259	### clean the whole place
260	clean -a > /dev/null 2> /dev/null
261	### get a possibly modified registry !
262	if [[ "${scenario}" == "" ]]
263	then
264	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
265	fi
266	### ensure the model will be recompiled from scratch with correct registry
267	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
268	# answer='y' ## a voir... pas si sur
269	# else
270	# if [[ "${phys}" != "nophys_" ]]
271	# then
272	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
273	# case ${answer} in
274	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
275	# *) answer='no' ;;
276	# esac
277	# fi
278	fi
279	fi
280
281	# summary
282	echo '**********************'
283	echo '*** Your folder is ...'
284	echo '**********************'
285	echo ${conf_wrf}
286	echo '**********************'
287	echo '****************************************'
288	echo so ...
289	echo your computer is ${machine} bits
290	echo ${compilo} is your compiler
291	if [[ "${compilo}" = "mpi" ]]
292	then
293	echo MPICH is in ${WHERE_MPI}
294	fi
295	echo you will use ${numproc} processors
296	echo you have ${lon} x points
297	echo ' '${lat} y points
298	echo ' '${level} z points
299	echo ' '${dom} domains
300	echo ' '${tra} tracers
301	if [[ "${phys}" == "newphys_" ]]
302	then
303	echo ' '${scat} scatterers
304	fi
305	echo '****************************************'
306	# save answer
307	\rm last 2> /dev/null
308	touch last
309	echo ${reply} >> last
310	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
311	then
312	echo ${numproc} >> last
313	fi
314	echo ${lon} >> last
315	echo ${lat} >> last
316	echo ${level} >> last
317	echo ${dom} >> last
318	echo ${tra} >> last
319	echo ${scat} >> last
320	#echo ${answer} >> last
321
322	#------------
323	# log files
324	#------------
325	\rm log_compile 2> /dev/null
326	\rm log_error 2> /dev/null
327
328	#-----------------
329	# configure WRF
330	#-----------------
331	mv configure.wrf configure.wrf.bak 2> /dev/null
332	########################
333	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
334
335	#### in this case options are different because for LES, WRFV3 is used
336	if [[ "${config}" == "les" ]]
337	then
338	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
339	fi
340
341	case ${conf_wrf_forall} in
342
343	#######LES-specific (WRFV3-based) -- previously in 'makeles'
344	#######
345
346	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
347	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
348	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
349	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
350	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
351	then
352	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
353	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
354	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
355	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
356	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
357	else
358	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
359	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
360	fi
361	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
362	### pas forcement necessaire ici mais OK
363	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
364	\rm conf > /dev/null ;;
365
366	lesmpifort_64) ## MPI (dm) 64 bits IFORT
367	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
368	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
369	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
370	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
371	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
372	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
373	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
374	\rm conf > /dev/null ;;
375
376	#######
377	#######LES-specific (WRFV3-based) -- previously in 'makeles'
378
379	#######TEST TEST
380	# GFORTRAN, 64 bits, no nesting
381	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
382	echo 15 \| configure > log_compile 2> log_error
383	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
384	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
385	#######TEST TEST
386	# PGF90, 32 bits, no nesting
387	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
388	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
389	# PGF90, 32 bits, nesting
390	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
391	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
392	# PGF90, 64 bits, no nesting
393	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
394	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
395	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
396	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
397	# PGF90, 64 bits, nesting
398	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
399	echo 4 \| configure > log_compile 2> log_error
400	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
401	# G95, 32 bits, no nesting
402	g95_32_single) echo 13 \| configure > log_compile 2> log_error
403	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
404	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
405	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
406	echo 14 \| configure > log_compile 2> log_error
407	##### marche pas ....
408	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
409	#sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
410	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
411	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
412	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
413	# IFORT, 64 bits, no nesting
414	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
415	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
416	## !!! NETCDF must be defined
417	sed s+"lio_grib_share"+"lio_grib_share -L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
418	mv -f yeah configure.wrf ;;
419	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
420	echo 9 \| configure > log_compile 2> log_error
421	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
422	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
423	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
424	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
425	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
426	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
427	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
428	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
429	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
430	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
431	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
432	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
433	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
434	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
435	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
436	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
437	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
438	### necessary even if mpi-selector is used (no need in makegcm though)
439	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
440	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
441	## !!! NETCDF must be defined
442	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
443	mv -f yeah configure.wrf
444	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
445	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
446	mv -f yeah configure.wrf ;;
447	# MPICH, 64 bits, no nesting / nesting
448	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
449	echo 3 \| configure > log_compile 2> log_error
450	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
451	### the following line is necessary because readtesassim has a line "use netcdf" in it!
452	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
453	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
454	#\| sed s+"fastsse"+"fast"+g > yeah
455	#mv -f yeah configure.wrf #;;
456	# #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
457	# ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
458	# ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
459	#sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah
460	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
461	mv -f yeah configure.wrf ;;
462	# MPICH, 64 bits, OK with periodic BC but no positive definite
463	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
464	echo 2 \| configure > log_compile 2> log_error
465	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
466	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
467	mv -f yeah configure.wrf ;;
468	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
469	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
470	echo 3 \| configure > log_compile 2> log_error
471	sed -f mars.sed configure.wrf > yeah
472	mv -f yeah configure.wrf ;;
473	# ANYTHING ELSE
474	*) echo NO PRESETS ...
475	if [ ${donotallow} -eq 0 ]
476	then
477	configure
478	else
479	# problem when an input file is used
480	echo 'please cd to '$PWD' and type ./configure'
481	exit
482	fi ;;
483	esac
484	########################
485
486
487	### here a case structure would be great
488
489	if [[ "${phys}" == "newphys_" ]]
490	then
491	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
492	then
493	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
494	else
495	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
496	fi
497	mv -f yeah configure.wrf
498	fi
499
500	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment
501	then
502	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
503	mv -f yeah configure.wrf
504	fi
505
506	################
507	if [[ "${phys}" == "nophys_" ]]
508	then
509	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
510	then
511	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
512	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
513	else
514	### not tested yet but should be working
515	echo CAUTION CAUTION CAUTION NOT FULLY TESTED
516	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
517	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
518	fi
519	fi
520	################
521
522	if [ ${debug} -ne 0 ] # not working for xlf!
523	then
524	echo 'DEBUG DEBUG DEBUG DEBUG'
525	sed s+"#-g"+"-g"+g configure.wrf > yeah
526	mv -f yeah configure.wrf
527	fi
528
529
530	##################################################
531	# compile physics
532	##################################################
533	if [ ${donotcompilephys} -eq 0 ]
534	then
535
536	cd mars_lmd/
537
538	# required size
539	#----------------
540	case ${numproc} in
541	1) divx=1 ; divy=1 ;;
542	2) divx=1 ; divy=2 ;;
543	4) divx=2 ; divy=2 ;;
544	6) divx=2 ; divy=3 ;;
545	8) divx=2 ; divy=4 ;;
546	12) divx=3 ; divy=4 ;;
547	16) divx=4 ; divy=4 ;;
548	20) divx=4 ; divy=5 ;;
549	24) divx=4 ; divy=6 ;;
550	32) divx=4 ; divy=8 ;;
551	64) divx=8 ; divy=8 ;;
552	128) divx=8 ; divy=16 ;;
553	*) echo not yet supported ; exit ;;
554	esac
555	physx=$(expr ${lon} - 1)
556	restex=$(expr ${physx} \% ${divx})
557	physy=$(expr ${lat} - 1)
558	restey=$(expr ${physy} \% ${divy})
559	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
560	then
561	echo nx-1 shall be divided by ${divx}
562	echo ny-1 shall be divided by ${divy}
563	exit
564	fi
565	physx=$(expr ${physx} \/ ${divx})
566	physy=$(expr ${physy} \/ ${divy})
567	physz=$(expr ${level} - 1)
568
569	# change this if you change num_soil_layers in WRF
570	# -- default is 10
571	if [[ "${phys}" == "newphys_" ]]
572	then
573	soilsize=18 ## nouvelle physique
574	else
575	soilsize=10
576	fi
577
578	# GCM environment variables
579	#--------------------------
580	export LMDGCM=$PWD
581	export LIBOGCM=$PWD/libo
582
583	# generate the appropriate dimphys
584	#---------------------------------
585	cd libf/phymars
586	\rm dimphys.h 2> /dev/null
587	if [[ "${phys}" == "newphys_" ]]
588	then
589	ln -sf meso_inc/meso_dimphys.h_ref .
590	fi
591	physize=$(expr ${physx} \* ${physy})
592	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
593	head -15 dimphys.h
594	### TEST new new phys
595	if [[ "${phys}" == "newphys_" ]]
596	then
597	touch gr_fi_dyn.F.lien
598	ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
599	###############################
600	\rm scatterers.h
601	cat << EOF > scatterers.h
602	!-----------------------------------------------------------------------
603	! INCLUDE 'scatterers.h'
604	!
605	! Number of kind of tracer radiative properties
606	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
607	! (ex: naerkind=1 if you use one dust mode without ice ...)
608	! (ex: naerkind=2 if you use one dust mode and active ice ...)
609	!-----------------------------------------------------------------------
610
611	integer, parameter :: naerkind=${scat}
612
613	!-----------------------------------------------------------------------
614	EOF
615	###############################
616	###############################
617	fi
618	###
619	###
620	cd ../..
621
622	# prepare for nesting
623	#---------------------
624	cd libf
625	duplicate${dom} 2> /dev/null
626	cd ..
627
628	# compile physics
629	#--------------------------
630	\rm libf/grid/dimensions.h 2> /dev/null
631	\rm -rf libo/* 2> /dev/null
632	echo 1. compiling LMD physics ...
633	echo compilation info in:
634	echo $PWD/libo/log_compile_phys
635
636	if [ ${debug} -ne 0 ]
637	then
638	echo 'DEBUG DEBUG DEBUG DEBUG'
639	nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
640	else
641	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
642	fi
643	echo ... done
644	# clean the duplicate routines
645	cd libf
646	duplicate1 2> /dev/null
647	cd ..
648
649	# merge LMD executables in one lib
650	#--------------------------------------
651	cd libo
652	mkdir temp
653	#cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp
654	cp -f LINUX/.a temp
655	cd temp
656	ar x libbibio.a
657	ar x libphymars.a
658	ar x libaeronomars.a
659	\rm *.a
660	ar r liblmd.a *
661	cp -f liblmd.a ..
662	cd ..
663	\rm -r temp
664	nm liblmd.a > liblmd_content
665	# finish merge
666	cd ..
667
668	# save a copy
669	#--------------
670	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}_${scat}
671	echo '****************************************'
672
673	# ok
674	#----
675	cd ..
676
677	# manage nest includes in module_lmd_driver.F
678	#----
679	cp call_meso_inifis$dom.inc call_meso_inifis.inc
680	cp call_meso_physiq$dom.inc call_meso_physiq.inc
681
682
683	fi
684	##################################################
685	# END compile physics
686	##################################################
687
688	#------------------
689	# compile WRF
690	#------------------
691	if [ ${justphys} -eq 0 ]
692	then
693
694	echo 2. compiling WRF dynamical core ...
695
696	if [[ "${phys}" == "nophys_" ]]
697	then
698	echo 'NO LMD PHYSICS included'
699	else
700	if [[ ! ( -f "call_meso_physiq.inc" ) ]]
701	then
702	echo 'did you compile the physics ? no call_meso_physiq.inc !'
703	exit
704	fi
705	fi
706
707	# be sure to compile with the most recent physics
708	touch phys/module_lmd_driver.F
709
710	# talk to user
711	echo '>>> compiling ... this may be long ... <<<'
712	echo check progress in:
713	echo $PWD/log_compile
714	echo check possible errors in:
715	echo $PWD/log_error
716
717	# compile ...
718	case ${config} in
719	'') compile em_real > log_compile 2> log_error
720	# save executables
721	cd main
722	if [[ -f real.exe ]]
723	then
724	echo 'Looks good ! real.exe is here...'
725	fi
726	if [[ -f wrf.exe ]]
727	then
728	echo 'Looks good ! wrf.exe is here...'
729	fi
730	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
731	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
732	cd .. ;;
733	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
734	echo '>>> YOUR CONFIG IS : '${config}
735	compile em_quarter_ss > log_compile 2> log_error
736	# save executables
737	cd main
738	if [[ -f ideal.exe ]]
739	then
740	echo 'Looks good ! ideal.exe is here...'
741	fi
742	if [[ -f wrf.exe ]]
743	then
744	echo 'Looks good ! wrf.exe is here...'
745	fi
746	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
747	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
748	cd .. ;;
749	'les') echo '>>> YOUR CONFIG IS : '${config}
750	mkdir 'test/em_les' 2> /dev/null
751	compile em_les > log_compile 2> log_error
752	# save executables
753	cd main
754	if [[ -f ideal.exe ]]
755	then
756	echo 'Looks good ! ideal.exe is here...'
757	fi
758	if [[ -f wrf.exe ]]
759	then
760	echo 'Looks good ! wrf.exe is here...'
761	fi
762	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
763	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
764	cd .. ;;
765	*) echo not supported... please use ; echo ideal les ; exit ;;
766	esac
767	echo '*****last lines from log_error*******'
768	tail -n 20 log_error
769	fi
770
771	# the end
772	echo '****************************************'
773	echo 'done.'
774	echo '****************************************'
775	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}
776	mv last ../../
777
778	# add here specific messages
779	if [[ "${dom}" != "1" ]]
780	then
781	nest=$(expr ${lon} + 4)
782	echo NB: in namelist.input, please set:
783	echo '
784	max_dom = '$dom'
785	s_we = 1,1,
786	e_we = '$lon','$nest',
787	s_sn = 1,1,
788	e_sn = '$lat','$nest',
789	s_vert = 1,1,
790	e_vert = '$level','$level','
791	fi
792

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