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makemeso @ 1185

Last change on this file since 1185 was 1060, checked in by aslmd, 11 years ago
MESOSCALE. a modification of the makemeso script so that with newphys additional variables are output by default.
Property svn:executable set to ``*
File size: 35.4 KB

Line
1	#! /bin/bash
2
3
4	##################################
5	# makemeso allows you to compile #
6	# WRF with modified LMD physics #
7	##################################
8
9	##############################
10	# Author: A. Spiga #
11	# New version : October 2008 #
12	# Last update : January 2009 #
13	# November 09 #
14	# January 11 #
15	##############################
16
17	###############################
18	#### Type makemeso -h for help
19	###############################
20
21
22
23	##############################################################################################
24	##############################################################################################
25	##############################################################################################
26	##############################################################################################
27
28	donotcompile=0
29	donotallow=0
30	config=''
31	donotcompilephys=0
32	justphys=0
33	debug=0
34	fresh_start=0
35	phys=""
36	scenario=""
37	from_scratch=0
38	while getopts "drc:njhgpfs:xe" options; do
39	case $options in
40	d ) donotcompile=1;; ## just to check the compile folder
41	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
42	c ) config="${OPTARG}";; ## idealized cases
43	n ) donotcompilephys=1;; ## do not recompile physics
44	j ) justphys=1;; ## just compile LMD physics
45	g ) debug=1;; ## debug mode
46	p ) phys="newphys_";; ## with new physics
47	f ) fresh_start=1;; ## a fresh start
48	e ) from_scratch=1;; ## a fresh start with a completely new folder
49	s ) scenario="${OPTARG}";; ## a specific scenario, you need a corresponding "mars_lmd_..."
50	x ) donotcompile=1;phys="nophys_";donotcompilephys=1;; ## a case with no LMD physics included
51	h ) echo "
52	# Use:
53	#
54	# makemeso ## basic use (real-case configuration)
55	#
56	# makemeso -d ## no compilation, just check the name of the compile folder
57	#
58	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
59	# makemeso -c les ## large-eddy simulations mode based on WRFV3
60	#
61	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
62	#
63	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
64	# makemeso -r < last ## basic use + skip questions + only known config
65	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
66	#
67	# makemeso -j ## just compile the LMD physics
68	#
69	# makemeso -g ## debug mode
70	#
71	# makemeso -h ## display options
72	#
73	# makemeso -p ## with new LMD physics
74	#
75	# makemeso -f ## fresh start [clean -a]
76	#
77	# makemeso -e ## a completely new recompile with erasing ALL compiling folder
78	#
79	# makemeso -s storm ## a specific scenario, you need a corresponding mars_lmd_... (only for newphys)
80	#
81	# makemeso -x ## a case with no LMD physics included
82	" ; exit ;;
83	esac
84	done
85
86	#--------------
87	# talk w/ user
88	#--------------
89	echo '****************************************'
90	echo ' LMD Mesoscale Model Compiler. Welcome.'
91	echo '****************************************'
92	if [[ "${phys}" == "newphys_" ]]
93	then
94	echo '*********with new physics***********'
95	echo '****************************************'
96	fi
97	# computer
98	uname -a \| grep x86_64 > /dev/null
99	if [[ "$?" == 0 ]]
100	then
101	machine='64'
102	else
103	machine='32'
104	fi
105	# compiler
106	echo "Supported compiler options are "
107	echo " <1> pgf90"
108	echo " <2> g95"
109	echo " <3> pgf90 + mpi"
110	echo " <4> ifort"
111	echo " <5> ifort + mpi"
112	echo " <7> xlf + mpi (IBM AIX)"
113	echo "Your choice ?" ; read reply
114	case ${reply} in
115	1) compilo='pgf' ; numproc=1 ;;
116	2) compilo='g95' ; numproc=1 ;;
117	3) compilo='mpi'
118	if [[ "${WHERE_MPI}" = "" ]]
119	then
120	echo Please initialize the variable WHERE_MPI in your environnement
121	exit
122	fi
123	echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
124	4) compilo='ifort' ; numproc=1 ;;
125	5) compilo='mpifort' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
126	7) compilo='mpixlf' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
127	### for tests
128	99) compilo='gnu' ; numproc=1 ;;
129	*) echo not supported by this script ; exit ;;
130	esac
131	# dimensions
132	if [ ${donotcompile} -eq 0 ]
133	then
134	echo Grid points in longitude ? ; read lon
135	echo Grid points in latitude ? ; read lat
136	echo Number of vertical levels ? ; read level
137	fi
138	echo Number of domains ? ; read dom
139
140	###PB lecture dom si < last
141
142	case ${dom} in
143	1) single='_single' ;;
144	*) single='_nest' ;;
145	esac
146	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
147	then
148	single=''
149	fi
150
151	testflag=''
152	####
153	#testflag='_test'
154	####
155
156	conf_wrf="${config}${scenario}${phys}${compilo}_${machine}${single}${testflag}"
157	\rm what_folder 2> /dev/null
158	echo ${conf_wrf} > what_folder
159	if [ ${donotcompile} -eq 1 ]
160	then
161	#\rm what_folder 2> /dev/null
162	#echo '**********************'
163	#echo '*** Your folder is ...'
164	#echo '**********************'
165	#echo ${conf_wrf} \| tee what_folder
166	#cat what_folder
167	#echo ${conf_wrf} > what_folder
168	#echo ${reply} > what_compilo
169	#echo ${numproc} > what_numproc
170	if [[ "${phys}" != "nophys_" ]]
171	then
172	exit
173	fi
174	else
175	echo Number of tracers ? ; read tra
176	# tracers: no dynamically set in newphys 09/2013
177	if [[ "${phys}" == "newphys_" ]]
178	then
179	tra=999
180	else
181	if [ ${tra} -eq 0 ]
182	then
183	tra=1
184	fi
185	fi
186	# scatterers: a specific stuff for newphys
187	if [[ "${phys}" == "newphys_" ]]
188	then
189	echo "How many types of scatterer are you using ? 1 [dust] or 2 [dust + water ice]" ; read scat
190	else
191	scat=1 ## dummy stuff
192	fi
193	fi
194	# 'from scratch' case
195	if [ ${from_scratch} -eq 1 ]
196	then
197	echo "***** I ERASE THE FOLDER "${conf_wrf}
198	\rm -rf ${conf_wrf}
199	fi
200	# folder
201	mkdir ${conf_wrf} 2> /dev/null
202	if [[ "$?" == 0 ]]
203	then
204	echo new folder ... link sources
205	if [[ "${phys}" == "newphys_" ]]
206	then
207	\rm copy_model_tmp > /dev/null 2> /dev/null
208	if [[ "${scenario}" == "" ]]
209	then
210	sed s+"mars_lmd"+"mars_lmd_new"+g SRC/SCRIPTS/copy_model > copy_model_tmp
211	else
212	echo SCENARIO ${scenario} DID YOU INCLUDE THE SPECIFIC folder ? ; read dummy
213	sed s+"mars_lmd"+"mars_lmd_new_${scenario}"+g SRC/SCRIPTS/copy_model > copy_model_tmp
214	if [[ "${config}" == "les" ]]
215	then
216	echo "NOT SUPPORTED, check options"
217	exit
218	fi
219	fi
220	if [[ "${config}" == "les" ]]
221	then
222	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g copy_model_tmp > yeah
223	mv yeah copy_model_tmp
224	fi
225	chmod 755 copy_model_tmp
226	./copy_model_tmp
227	\rm copy_model_tmp
228	mv zeWRFV2 ${conf_wrf}/WRFV2
229	cd ${conf_wrf}/WRFV2
230	if [[ "${scenario}" == "" ]]
231	then
232	ln -sf mars_lmd_new mars_lmd
233	if [[ "${phys}" == "newphys_" ]]
234	then
235	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
236	fi
237	else
238	ln -sf mars_lmd_new_${scenario} mars_lmd
239	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/Registry.EM mars_lmd_new_${scenario}/
240	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/*.inc mars_lmd_new_${scenario}/
241	cd Registry ; ln -sf ../mars_lmd_new_${scenario}/Registry.EM . ; cd ..
242	fi
243	#ln -sf meso_callkeys_newphys.h meso_callkeys.h
244	cd Registry ; Registry.bash ; cd ..
245	else
246	if [[ "${config}" == "les" ]]
247	then
248	### NB: With physics: LES folder // Without physics : LESnophys_ folder
249	### ---- because differences in 'modif' folder ----
250	sed s+"PWD/SRC/"+"PWD/SRC/LES$phys/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
251	else
252	cp SRC/SCRIPTS/copy_model copy_model_tmp
253	fi
254	chmod 755 copy_model_tmp
255	./copy_model_tmp
256	\rm copy_model_tmp
257	mv zeWRFV2 ${conf_wrf}/WRFV2
258	cd ${conf_wrf}/WRFV2
259	cd Registry ; ./Registry.bash ; cd ..
260	fi
261	#### sparadrap consequent a l'utilisation de copy_model pour les liens
262	#### -- car alors il manque fftpack
263	if [[ "${config}" == "les" ]]
264	then
265	if [[ "${phys}" == "nophys_" ]]
266	then
267	## voir ci-dessus pour le folder
268	cp ../../SRC/LES$phys/correcfft ./
269	else
270	cp ../../SRC/LES/correcfft ./
271	fi
272	./correcfft
273	\rm correcfft
274	fi
275	else
276	cd ${conf_wrf}/WRFV2
277	if [ ${fresh_start} -eq 1 ]
278	then
279	echo '*** FRESH START, I clean everything'
280	### clean the whole place
281	clean -a > /dev/null 2> /dev/null
282	### get a possibly modified registry !
283	if [[ "${scenario}" == "" ]]
284	then
285	if [[ "${phys}" == "newphys_" ]]
286	then
287	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
288	else
289	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
290	fi
291	fi
292	if [[ "${config}" == "les" ]]
293	then
294	cp ../../SRC/LES/WRFV2/Registry/Registry.EM Registry/
295	fi
296	### ensure the model will be recompiled from scratch with correct registry
297	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
298	# answer='y' ## a voir... pas si sur
299	# else
300	# if [[ "${phys}" != "nophys_" ]]
301	# then
302	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
303	# case ${answer} in
304	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
305	# *) answer='no' ;;
306	# esac
307	# fi
308	fi
309	fi
310
311	# summary
312	echo '**********************'
313	echo '*** Your folder is ...'
314	echo '**********************'
315	echo ${conf_wrf}
316	echo '**********************'
317	echo '****************************************'
318	echo so ...
319	echo your computer is ${machine} bits
320	echo ${compilo} is your compiler
321	if [[ "${compilo}" = "mpi" ]]
322	then
323	echo MPICH is in ${WHERE_MPI}
324	fi
325	echo you will use ${numproc} processors
326	echo you have ${lon} x points
327	echo ' '${lat} y points
328	echo ' '${level} z points
329	echo ' '${dom} domains
330	echo ' '${tra} tracers
331	if [[ "${phys}" == "newphys_" ]]
332	then
333	echo ' '${scat} scatterers
334	fi
335	echo '****************************************'
336	# save answer
337	\rm last 2> /dev/null
338	touch last
339	echo ${reply} >> last
340	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
341	then
342	echo ${numproc} >> last
343	fi
344	echo ${lon} >> last
345	echo ${lat} >> last
346	echo ${level} >> last
347	echo ${dom} >> last
348	echo ${tra} >> last
349	echo ${scat} >> last
350	#echo ${answer} >> last
351
352	#------------
353	# log files
354	#------------
355	\rm log_compile 2> /dev/null
356	\rm log_error 2> /dev/null
357
358	#-----------------
359	# configure WRF
360	#-----------------
361	mv configure.wrf configure.wrf.bak 2> /dev/null
362	########################
363	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
364
365	#### in this case options are different because for LES, WRFV3 is used
366	if [[ "${config}" == "les" ]]
367	then
368	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
369	fi
370
371	case ${conf_wrf_forall} in
372
373	#######LES-specific (WRFV3-based) -- previously in 'makeles'
374	#######
375
376	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
377	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
378	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
379	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
380	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
381	then
382	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
383	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
384	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
385	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
386	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
387	else
388	#sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
389	#sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
390	#### OPENMPI
391	sed s+"mpif90 -f90=\$(SFC)"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
392	sed s+"mpicc -cc=\$(SCC)"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
393	fi
394	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
395	### pas forcement necessaire ici mais OK
396	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
397	\rm conf > /dev/null ;;
398
399	lesmpifort_64) ## MPI (dm) 64 bits IFORT
400	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
401	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
402	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
403	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
404	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
405	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
406	sed s+"O3"+"O3 -mcmodel=large -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
407	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
408	if [ ${debug} -ne 0 ] # not working for xlf!
409	then
410	echo 'DEBUG DEBUG DEBUG DEBUG'
411	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
412	mv -f yeah configure.wrf
413	fi
414	\rm conf > /dev/null ;;
415
416	#######
417	#######LES-specific (WRFV3-based) -- previously in 'makeles'
418
419	#######TEST TEST
420	# GFORTRAN, 64 bits, no nesting
421	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
422	echo 15 \| configure > log_compile 2> log_error
423	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
424	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
425	#######TEST TEST
426	# PGF90, 32 bits, no nesting
427	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
428	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
429	# PGF90, 32 bits, nesting
430	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
431	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
432	# PGF90, 64 bits, no nesting
433	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
434	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
435	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
436	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
437	# PGF90, 64 bits, nesting
438	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
439	echo 4 \| configure > log_compile 2> log_error
440	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
441	# G95, 32 bits, no nesting
442	g95_32_single) echo 13 \| configure > log_compile 2> log_error
443	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
444	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
445	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
446	echo 14 \| configure > log_compile 2> log_error
447	##### marche pas ....
448	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
449	#sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
450	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
451	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
452	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
453	# IFORT, 64 bits, no nesting
454	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
455	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
456	if [ ${debug} -ne 0 ] # not working for xlf!
457	then
458	echo 'DEBUG DEBUG DEBUG DEBUG'
459	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
460	mv -f yeah configure.wrf
461	fi
462	## !!! NETCDF must be defined
463	sed s+"lio_grib_share"+"lio_grib_share -L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
464	mv -f yeah configure.wrf ;;
465	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
466	echo 9 \| configure > log_compile 2> log_error
467	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
468	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
469	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
470	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
471	if [ ${debug} -ne 0 ] # not working for xlf!
472	then
473	echo 'DEBUG DEBUG DEBUG DEBUG'
474	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
475	mv -f yeah configure.wrf
476	fi
477	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
478	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
479	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
480	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
481	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
482	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
483	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
484	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
485	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
486	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
487	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
488	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
489	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
490	### necessary even if mpi-selector is used (no need in makegcm though)
491	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
492	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
493	## !!! NETCDF must be defined
494	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
495	mv -f yeah configure.wrf
496	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
497	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
498	mv -f yeah configure.wrf ;;
499	# MPICH, 64 bits, no nesting / nesting
500	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
501	echo 3 \| configure > log_compile 2> log_error
502	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
503	### the following line is necessary because readtesassim has a line "use netcdf" in it!
504	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
505	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
506	#sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT -w -O3"+g > yeah
507	#\| sed s+"fastsse"+"fast"+g > yeah
508	mv -f yeah configure.wrf ;;
509	# #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
510	# ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
511	# ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
512	#sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah
513	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
514	#sed s+"-fastsse"+""+g configure.wrf > yeah
515	#sed s+"-fastsse"+"-fast"+g configure.wrf > yeah
516	#sed s+"-fastsse"+"-Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8 -Mfprelaxed"+g configure.wrf > yeah
517	#mv -f yeah configure.wrf ;;
518	# MPICH, 64 bits, OK with periodic BC but no positive definite
519	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
520	echo 2 \| configure > log_compile 2> log_error
521	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
522	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
523	mv -f yeah configure.wrf ;;
524	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
525	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
526	echo 3 \| configure > log_compile 2> log_error
527	sed -f mars.sed configure.wrf > yeah
528	mv -f yeah configure.wrf ;;
529	# ANYTHING ELSE
530	*) echo NO PRESETS ...
531	if [ ${donotallow} -eq 0 ]
532	then
533	configure
534	else
535	# problem when an input file is used
536	echo 'please cd to '$PWD' and type ./configure'
537	exit
538	fi ;;
539	esac
540	########################
541
542
543	### here a case structure would be great
544
545	if [[ "${phys}" == "newphys_" ]]
546	then
547	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
548	then
549	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
550	else
551	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
552	fi
553	mv -f yeah configure.wrf
554	fi
555
556	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment
557	then
558	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
559	mv -f yeah configure.wrf
560	fi
561
562	################
563	if [[ "${phys}" == "nophys_" ]]
564	then
565	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
566	then
567	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
568	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
569	else
570	### not tested yet but should be working
571	echo CAUTION CAUTION CAUTION NOT FULLY TESTED
572	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
573	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
574	fi
575	fi
576	################
577
578	if [ ${debug} -ne 0 ] # not working for xlf!
579	then
580	echo 'DEBUG DEBUG DEBUG DEBUG'
581	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
582	#sed s+"# -g"+"-g -Ktrap=fp -Mbounds"+g configure.wrf > yeah
583	#sed s+"# -g"+"-g"+g configure.wrf > yeah
584	mv -f yeah configure.wrf
585	fi
586
587
588	##################################################
589	# compile physics
590	##################################################
591	if [ ${donotcompilephys} -eq 0 ]
592	then
593
594	cd mars_lmd/
595
596	# required size
597	#----------------
598	case ${numproc} in
599	1) divx=1 ; divy=1 ;;
600	2) divx=1 ; divy=2 ;;
601	4) divx=2 ; divy=2 ;;
602	6) divx=2 ; divy=3 ;;
603	8) divx=2 ; divy=4 ;;
604	12) divx=3 ; divy=4 ;;
605	16) divx=4 ; divy=4 ;;
606	20) divx=4 ; divy=5 ;;
607	24) divx=4 ; divy=6 ;;
608	32) divx=4 ; divy=8 ;;
609	64) divx=8 ; divy=8 ;;
610	128) divx=8 ; divy=16 ;;
611	*) echo not yet supported ; exit ;;
612	esac
613	physx=$(expr ${lon} - 1)
614	restex=$(expr ${physx} \% ${divx})
615	physy=$(expr ${lat} - 1)
616	restey=$(expr ${physy} \% ${divy})
617	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
618	then
619	echo nx-1 shall be divided by ${divx}
620	echo ny-1 shall be divided by ${divy}
621	exit
622	fi
623	physx=$(expr ${physx} \/ ${divx})
624	physy=$(expr ${physy} \/ ${divy})
625	physz=$(expr ${level} - 1)
626
627	# change this if you change num_soil_layers in WRF
628	# -- default is 10
629	if [[ "${phys}" == "newphys_" ]]
630	then
631	soilsize=18 ## nouvelle physique
632	else
633	soilsize=10
634	fi
635
636	# GCM environment variables
637	#--------------------------
638	export LMDGCM=$PWD
639	export LIBOGCM=$PWD/libo
640
641	# generate the appropriate dimphys
642	#---------------------------------
643	cd libf/phymars
644	\rm dimphys.h 2> /dev/null
645	if [[ "${phys}" == "newphys_" ]]
646	then
647	ln -sf meso_inc/meso_dimphys.h_ref .
648	fi
649	physize=$(expr ${physx} \* ${physy})
650	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
651	head -15 dimphys.h
652	### TEST new new phys
653	if [[ "${phys}" == "newphys_" ]]
654	then
655	touch gr_fi_dyn.F.lien
656	ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
657	###############################
658	\rm scatterers.h
659	cat << EOF > scatterers.h
660	!-----------------------------------------------------------------------
661	! INCLUDE 'scatterers.h'
662	!
663	! Number of kind of tracer radiative properties
664	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
665	! (ex: naerkind=1 if you use one dust mode without ice ...)
666	! (ex: naerkind=2 if you use one dust mode and active ice ...)
667	!-----------------------------------------------------------------------
668
669	integer, parameter :: naerkind=${scat}
670
671	!-----------------------------------------------------------------------
672	EOF
673	###############################
674	###############################
675	fi
676	###
677	###
678	cd ../..
679
680	# prepare for nesting
681	#---------------------
682	cd libf
683	duplicate${dom} 2> /dev/null
684	cd ..
685
686	# compile physics
687	#--------------------------
688	\rm libf/grid/dimensions.h 2> /dev/null
689	\rm -rf libo/* 2> /dev/null
690	echo 1. compiling LMD physics ...
691	echo compilation info in:
692	echo $PWD/libo/log_compile_phys
693
694	if [ ${debug} -ne 0 ]
695	then
696	echo 'DEBUG DEBUG DEBUG DEBUG'
697	nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
698	else
699	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
700	fi
701	echo ... done
702	# clean the duplicate routines
703	cd libf
704	duplicate1 2> /dev/null
705	cd ..
706
707	# merge LMD executables in one lib
708	#--------------------------------------
709	cd libo
710	mkdir temp
711	#cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp
712	cp -f LINUX/.a temp/
713	cd temp
714	ar x libbibio.a
715	ar x libphymars.a
716	ar x libaeronomars.a
717	\rm *.a
718	ar r liblmd.a *
719	cp -f liblmd.a ..
720	cd ..
721	\rm -r temp
722	nm liblmd.a > liblmd_content
723	# finish merge
724	cd ..
725
726	# save a copy
727	#--------------
728	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}_${scat}
729	echo '****************************************'
730
731	# ok
732	#----
733	cd ..
734
735	# manage nest includes in module_lmd_driver.F
736	#----
737	cp call_meso_inifis$dom.inc call_meso_inifis.inc
738	cp call_meso_physiq$dom.inc call_meso_physiq.inc
739
740
741	fi
742	##################################################
743	# END compile physics
744	##################################################
745
746	#------------------
747	# compile WRF
748	#------------------
749	if [ ${justphys} -eq 0 ]
750	then
751
752	echo 2. compiling WRF dynamical core ...
753
754	if [[ "${phys}" == "nophys_" ]]
755	then
756	echo 'NO LMD PHYSICS included'
757	else
758	if [[ ! ( -f "call_meso_physiq.inc" ) ]]
759	then
760	echo 'did you compile the physics ? no call_meso_physiq.inc !'
761	exit
762	fi
763	fi
764
765	# be sure to compile with the most recent physics
766	touch phys/module_lmd_driver.F
767
768	# talk to user
769	echo '>>> compiling ... this may be long ... <<<'
770	echo check progress in:
771	echo $PWD/log_compile
772	echo check possible errors in:
773	echo $PWD/log_error
774
775	# compile ...
776	case ${config} in
777	'') ./compile em_real > log_compile 2> log_error
778	# save executables
779	cd main
780	if [[ -f real.exe ]]
781	then
782	echo 'Looks good ! real.exe is here...'
783	fi
784	if [[ -f wrf.exe ]]
785	then
786	echo 'Looks good ! wrf.exe is here...'
787	fi
788	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
789	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
790	cd .. ;;
791	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
792	echo '>>> YOUR CONFIG IS : '${config}
793	./compile em_quarter_ss > log_compile 2> log_error
794	# save executables
795	cd main
796	if [[ -f ideal.exe ]]
797	then
798	echo 'Looks good ! ideal.exe is here...'
799	fi
800	if [[ -f wrf.exe ]]
801	then
802	echo 'Looks good ! wrf.exe is here...'
803	fi
804	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
805	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
806	cd .. ;;
807	'les') echo '>>> YOUR CONFIG IS : '${config}
808	mkdir 'test/em_les' 2> /dev/null
809	./compile em_les > log_compile 2> log_error
810	# save executables
811	cd main
812	if [[ -f ideal.exe ]]
813	then
814	echo 'Looks good ! ideal.exe is here...'
815	fi
816	if [[ -f wrf.exe ]]
817	then
818	echo 'Looks good ! wrf.exe is here...'
819	fi
820	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
821	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
822	cd .. ;;
823	*) echo not supported... please use ; echo ideal les ; exit ;;
824	esac
825	echo '*****last lines from log_error*******'
826	tail -n 20 log_error
827	fi
828
829	# the end
830	echo '****************************************'
831	echo 'done.'
832	echo '****************************************'
833	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}
834	mv last ../../
835	svn info ../../ > ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.svn.info
836
837	# add here specific messages
838	if [[ "${dom}" != "1" ]]
839	then
840	nest=$(expr ${lon} + 4)
841	echo NB: in namelist.input, please set:
842	echo '
843	max_dom = '$dom'
844	s_we = 1,1,
845	e_we = '$lon','$nest',
846	s_sn = 1,1,
847	e_sn = '$lat','$nest',
848	s_vert = 1,1,
849	e_vert = '$level','$level','
850	fi
851

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