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makemeso @ 1038

Last change on this file since 1038 was 1038, checked in by aslmd, 11 years ago

MESOSCALE
LMDZ.MARS

--> Performed the necessary modifications for dynamic tracers

to work with the mesoscale model (new physics).

--> Added precompiling flag MESOSCALE around pressure modifications

done in revision 883. This makes the mesoscale model become crazy.

--> Added an option -e in makemeso to erase a configuration and start over.

NOTE
--> not sure recent versions (rev>1000) are compliant with nesting compilation.
--> use mesoscale model + new physics with caution. still not stabilized.

Property svn:executable set to *

File size: 35.1 KB

Line
1	#! /bin/bash
2
3
4	##################################
5	# makemeso allows you to compile #
6	# WRF with modified LMD physics #
7	##################################
8
9	##############################
10	# Author: A. Spiga #
11	# New version : October 2008 #
12	# Last update : January 2009 #
13	# November 09 #
14	# January 11 #
15	##############################
16
17	###############################
18	#### Type makemeso -h for help
19	###############################
20
21
22
23	##############################################################################################
24	##############################################################################################
25	##############################################################################################
26	##############################################################################################
27
28	donotcompile=0
29	donotallow=0
30	config=''
31	donotcompilephys=0
32	justphys=0
33	debug=0
34	fresh_start=0
35	phys=""
36	scenario=""
37	from_scratch=0
38	while getopts "drc:njhgpfs:xe" options; do
39	case $options in
40	d ) donotcompile=1;; ## just to check the compile folder
41	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
42	c ) config="${OPTARG}";; ## idealized cases
43	n ) donotcompilephys=1;; ## do not recompile physics
44	j ) justphys=1;; ## just compile LMD physics
45	g ) debug=1;; ## debug mode
46	p ) phys="newphys_";; ## with new physics
47	f ) fresh_start=1;; ## a fresh start
48	e ) from_scratch=1;; ## a fresh start with a completely new folder
49	s ) scenario="${OPTARG}";; ## a specific scenario, you need a corresponding "mars_lmd_..."
50	x ) donotcompile=1;phys="nophys_";donotcompilephys=1;; ## a case with no LMD physics included
51	h ) echo "
52	# Use:
53	#
54	# makemeso ## basic use (real-case configuration)
55	#
56	# makemeso -d ## no compilation, just check the name of the compile folder
57	#
58	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
59	# makemeso -c les ## large-eddy simulations mode based on WRFV3
60	#
61	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
62	#
63	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
64	# makemeso -r < last ## basic use + skip questions + only known config
65	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
66	#
67	# makemeso -j ## just compile the LMD physics
68	#
69	# makemeso -g ## debug mode
70	#
71	# makemeso -h ## display options
72	#
73	# makemeso -p ## with new LMD physics
74	#
75	# makemeso -f ## fresh start [clean -a]
76	#
77	# makemeso -e ## a completely new recompile with erasing ALL compiling folder
78	#
79	# makemeso -s storm ## a specific scenario, you need a corresponding mars_lmd_... (only for newphys)
80	#
81	# makemeso -x ## a case with no LMD physics included
82	" ; exit ;;
83	esac
84	done
85
86	#--------------
87	# talk w/ user
88	#--------------
89	echo '****************************************'
90	echo ' LMD Mesoscale Model Compiler. Welcome.'
91	echo '****************************************'
92	if [[ "${phys}" == "newphys_" ]]
93	then
94	echo '*********with new physics***********'
95	echo '****************************************'
96	fi
97	# computer
98	uname -a \| grep x86_64 > /dev/null
99	if [[ "$?" == 0 ]]
100	then
101	machine='64'
102	else
103	machine='32'
104	fi
105	# compiler
106	echo "Supported compiler options are "
107	echo " <1> pgf90"
108	echo " <2> g95"
109	echo " <3> pgf90 + mpi"
110	echo " <4> ifort"
111	echo " <5> ifort + mpi"
112	echo " <7> xlf + mpi (IBM AIX)"
113	echo "Your choice ?" ; read reply
114	case ${reply} in
115	1) compilo='pgf' ; numproc=1 ;;
116	2) compilo='g95' ; numproc=1 ;;
117	3) compilo='mpi'
118	if [[ "${WHERE_MPI}" = "" ]]
119	then
120	echo Please initialize the variable WHERE_MPI in your environnement
121	exit
122	fi
123	echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
124	4) compilo='ifort' ; numproc=1 ;;
125	5) compilo='mpifort' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
126	7) compilo='mpixlf' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
127	### for tests
128	99) compilo='gnu' ; numproc=1 ;;
129	*) echo not supported by this script ; exit ;;
130	esac
131	# dimensions
132	if [ ${donotcompile} -eq 0 ]
133	then
134	echo Grid points in longitude ? ; read lon
135	echo Grid points in latitude ? ; read lat
136	echo Number of vertical levels ? ; read level
137	fi
138	echo Number of domains ? ; read dom
139
140	###PB lecture dom si < last
141
142	case ${dom} in
143	1) single='_single' ;;
144	*) single='_nest' ;;
145	esac
146	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
147	then
148	single=''
149	fi
150
151	testflag=''
152	####
153	#testflag='_test'
154	####
155
156	conf_wrf="${config}${scenario}${phys}${compilo}_${machine}${single}${testflag}"
157	\rm what_folder 2> /dev/null
158	echo ${conf_wrf} > what_folder
159	if [ ${donotcompile} -eq 1 ]
160	then
161	#\rm what_folder 2> /dev/null
162	#echo '**********************'
163	#echo '*** Your folder is ...'
164	#echo '**********************'
165	#echo ${conf_wrf} \| tee what_folder
166	#cat what_folder
167	#echo ${conf_wrf} > what_folder
168	#echo ${reply} > what_compilo
169	#echo ${numproc} > what_numproc
170	if [[ "${phys}" != "nophys_" ]]
171	then
172	exit
173	fi
174	else
175	echo Number of tracers ? ; read tra
176	# tracers: no dynamically set in newphys 09/2013
177	if [[ "${phys}" == "newphys_" ]]
178	then
179	tra=999
180	else
181	if [ ${tra} -eq 0 ]
182	then
183	tra=1
184	fi
185	fi
186	# scatterers: a specific stuff for newphys
187	if [[ "${phys}" == "newphys_" ]]
188	then
189	echo "How many types of scatterer are you using ? 1 [dust] or 2 [dust + water ice]" ; read scat
190	else
191	scat=1 ## dummy stuff
192	fi
193	fi
194	# 'from scratch' case
195	if [ ${from_scratch} -eq 1 ]
196	then
197	echo "***** I ERASE THE FOLDER "${conf_wrf}
198	\rm -rf ${conf_wrf}
199	fi
200	# folder
201	mkdir ${conf_wrf} 2> /dev/null
202	if [[ "$?" == 0 ]]
203	then
204	echo new folder ... link sources
205	if [[ "${phys}" == "newphys_" ]]
206	then
207	\rm copy_model_tmp > /dev/null 2> /dev/null
208	if [[ "${scenario}" == "" ]]
209	then
210	sed s+"mars_lmd"+"mars_lmd_new"+g SRC/SCRIPTS/copy_model > copy_model_tmp
211	else
212	echo SCENARIO ${scenario} DID YOU INCLUDE THE SPECIFIC folder ? ; read dummy
213	sed s+"mars_lmd"+"mars_lmd_new_${scenario}"+g SRC/SCRIPTS/copy_model > copy_model_tmp
214	if [[ "${config}" == "les" ]]
215	then
216	echo "NOT SUPPORTED, check options"
217	exit
218	fi
219	fi
220	if [[ "${config}" == "les" ]]
221	then
222	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g copy_model_tmp > yeah
223	mv yeah copy_model_tmp
224	fi
225	chmod 755 copy_model_tmp
226	./copy_model_tmp
227	\rm copy_model_tmp
228	mv zeWRFV2 ${conf_wrf}/WRFV2
229	cd ${conf_wrf}/WRFV2
230	if [[ "${scenario}" == "" ]]
231	then
232	ln -sf mars_lmd_new mars_lmd
233	else
234	ln -sf mars_lmd_new_${scenario} mars_lmd
235	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/Registry.EM mars_lmd_new_${scenario}/
236	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/*.inc mars_lmd_new_${scenario}/
237	cd Registry ; ln -sf ../mars_lmd_new_${scenario}/Registry.EM . ; cd ..
238	fi
239	#ln -sf meso_callkeys_newphys.h meso_callkeys.h
240	cd Registry ; Registry.bash ; cd ..
241	else
242	if [[ "${config}" == "les" ]]
243	then
244	### NB: With physics: LES folder // Without physics : LESnophys_ folder
245	### ---- because differences in 'modif' folder ----
246	sed s+"PWD/SRC/"+"PWD/SRC/LES$phys/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
247	else
248	cp SRC/SCRIPTS/copy_model copy_model_tmp
249	fi
250	chmod 755 copy_model_tmp
251	./copy_model_tmp
252	\rm copy_model_tmp
253	mv zeWRFV2 ${conf_wrf}/WRFV2
254	cd ${conf_wrf}/WRFV2
255	cd Registry ; ./Registry.bash ; cd ..
256	fi
257	#### sparadrap consequent a l'utilisation de copy_model pour les liens
258	#### -- car alors il manque fftpack
259	if [[ "${config}" == "les" ]]
260	then
261	if [[ "${phys}" == "nophys_" ]]
262	then
263	## voir ci-dessus pour le folder
264	cp ../../SRC/LES$phys/correcfft ./
265	else
266	cp ../../SRC/LES/correcfft ./
267	fi
268	./correcfft
269	\rm correcfft
270	fi
271	else
272	cd ${conf_wrf}/WRFV2
273	if [ ${fresh_start} -eq 1 ]
274	then
275	echo '*** FRESH START, I clean everything'
276	### clean the whole place
277	clean -a > /dev/null 2> /dev/null
278	### get a possibly modified registry !
279	if [[ "${scenario}" == "" ]]
280	then
281	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
282	fi
283	if [[ "${config}" == "les" ]]
284	then
285	cp ../../SRC/LES/WRFV2/Registry/Registry.EM Registry/
286	fi
287	### ensure the model will be recompiled from scratch with correct registry
288	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
289	# answer='y' ## a voir... pas si sur
290	# else
291	# if [[ "${phys}" != "nophys_" ]]
292	# then
293	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
294	# case ${answer} in
295	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
296	# *) answer='no' ;;
297	# esac
298	# fi
299	fi
300	fi
301
302	# summary
303	echo '**********************'
304	echo '*** Your folder is ...'
305	echo '**********************'
306	echo ${conf_wrf}
307	echo '**********************'
308	echo '****************************************'
309	echo so ...
310	echo your computer is ${machine} bits
311	echo ${compilo} is your compiler
312	if [[ "${compilo}" = "mpi" ]]
313	then
314	echo MPICH is in ${WHERE_MPI}
315	fi
316	echo you will use ${numproc} processors
317	echo you have ${lon} x points
318	echo ' '${lat} y points
319	echo ' '${level} z points
320	echo ' '${dom} domains
321	echo ' '${tra} tracers
322	if [[ "${phys}" == "newphys_" ]]
323	then
324	echo ' '${scat} scatterers
325	fi
326	echo '****************************************'
327	# save answer
328	\rm last 2> /dev/null
329	touch last
330	echo ${reply} >> last
331	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
332	then
333	echo ${numproc} >> last
334	fi
335	echo ${lon} >> last
336	echo ${lat} >> last
337	echo ${level} >> last
338	echo ${dom} >> last
339	echo ${tra} >> last
340	echo ${scat} >> last
341	#echo ${answer} >> last
342
343	#------------
344	# log files
345	#------------
346	\rm log_compile 2> /dev/null
347	\rm log_error 2> /dev/null
348
349	#-----------------
350	# configure WRF
351	#-----------------
352	mv configure.wrf configure.wrf.bak 2> /dev/null
353	########################
354	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
355
356	#### in this case options are different because for LES, WRFV3 is used
357	if [[ "${config}" == "les" ]]
358	then
359	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
360	fi
361
362	case ${conf_wrf_forall} in
363
364	#######LES-specific (WRFV3-based) -- previously in 'makeles'
365	#######
366
367	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
368	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
369	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
370	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
371	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
372	then
373	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
374	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
375	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
376	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
377	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
378	else
379	#sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
380	#sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
381	#### OPENMPI
382	sed s+"mpif90 -f90=\$(SFC)"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
383	sed s+"mpicc -cc=\$(SCC)"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
384	fi
385	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
386	### pas forcement necessaire ici mais OK
387	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
388	\rm conf > /dev/null ;;
389
390	lesmpifort_64) ## MPI (dm) 64 bits IFORT
391	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
392	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
393	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
394	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
395	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
396	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
397	sed s+"O3"+"O3 -mcmodel=large -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
398	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
399	if [ ${debug} -ne 0 ] # not working for xlf!
400	then
401	echo 'DEBUG DEBUG DEBUG DEBUG'
402	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
403	mv -f yeah configure.wrf
404	fi
405	\rm conf > /dev/null ;;
406
407	#######
408	#######LES-specific (WRFV3-based) -- previously in 'makeles'
409
410	#######TEST TEST
411	# GFORTRAN, 64 bits, no nesting
412	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
413	echo 15 \| configure > log_compile 2> log_error
414	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
415	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
416	#######TEST TEST
417	# PGF90, 32 bits, no nesting
418	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
419	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
420	# PGF90, 32 bits, nesting
421	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
422	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
423	# PGF90, 64 bits, no nesting
424	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
425	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
426	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
427	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
428	# PGF90, 64 bits, nesting
429	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
430	echo 4 \| configure > log_compile 2> log_error
431	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
432	# G95, 32 bits, no nesting
433	g95_32_single) echo 13 \| configure > log_compile 2> log_error
434	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
435	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
436	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
437	echo 14 \| configure > log_compile 2> log_error
438	##### marche pas ....
439	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
440	#sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
441	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
442	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
443	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
444	# IFORT, 64 bits, no nesting
445	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
446	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
447	if [ ${debug} -ne 0 ] # not working for xlf!
448	then
449	echo 'DEBUG DEBUG DEBUG DEBUG'
450	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
451	mv -f yeah configure.wrf
452	fi
453	## !!! NETCDF must be defined
454	sed s+"lio_grib_share"+"lio_grib_share -L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
455	mv -f yeah configure.wrf ;;
456	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
457	echo 9 \| configure > log_compile 2> log_error
458	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
459	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
460	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
461	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
462	if [ ${debug} -ne 0 ] # not working for xlf!
463	then
464	echo 'DEBUG DEBUG DEBUG DEBUG'
465	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
466	mv -f yeah configure.wrf
467	fi
468	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
469	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
470	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
471	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
472	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
473	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
474	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
475	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
476	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
477	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
478	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
479	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
480	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
481	### necessary even if mpi-selector is used (no need in makegcm though)
482	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
483	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
484	## !!! NETCDF must be defined
485	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
486	mv -f yeah configure.wrf
487	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
488	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
489	mv -f yeah configure.wrf ;;
490	# MPICH, 64 bits, no nesting / nesting
491	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
492	echo 3 \| configure > log_compile 2> log_error
493	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
494	### the following line is necessary because readtesassim has a line "use netcdf" in it!
495	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
496	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
497	#sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT -w -O3"+g > yeah
498	#\| sed s+"fastsse"+"fast"+g > yeah
499	mv -f yeah configure.wrf ;;
500	# #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
501	# ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
502	# ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
503	#sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah
504	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
505	#sed s+"-fastsse"+""+g configure.wrf > yeah
506	#sed s+"-fastsse"+"-fast"+g configure.wrf > yeah
507	#sed s+"-fastsse"+"-Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8 -Mfprelaxed"+g configure.wrf > yeah
508	#mv -f yeah configure.wrf ;;
509	# MPICH, 64 bits, OK with periodic BC but no positive definite
510	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
511	echo 2 \| configure > log_compile 2> log_error
512	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
513	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
514	mv -f yeah configure.wrf ;;
515	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
516	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
517	echo 3 \| configure > log_compile 2> log_error
518	sed -f mars.sed configure.wrf > yeah
519	mv -f yeah configure.wrf ;;
520	# ANYTHING ELSE
521	*) echo NO PRESETS ...
522	if [ ${donotallow} -eq 0 ]
523	then
524	configure
525	else
526	# problem when an input file is used
527	echo 'please cd to '$PWD' and type ./configure'
528	exit
529	fi ;;
530	esac
531	########################
532
533
534	### here a case structure would be great
535
536	if [[ "${phys}" == "newphys_" ]]
537	then
538	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
539	then
540	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
541	else
542	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
543	fi
544	mv -f yeah configure.wrf
545	fi
546
547	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment
548	then
549	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
550	mv -f yeah configure.wrf
551	fi
552
553	################
554	if [[ "${phys}" == "nophys_" ]]
555	then
556	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
557	then
558	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
559	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
560	else
561	### not tested yet but should be working
562	echo CAUTION CAUTION CAUTION NOT FULLY TESTED
563	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
564	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
565	fi
566	fi
567	################
568
569	if [ ${debug} -ne 0 ] # not working for xlf!
570	then
571	echo 'DEBUG DEBUG DEBUG DEBUG'
572	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
573	#sed s+"# -g"+"-g -Ktrap=fp -Mbounds"+g configure.wrf > yeah
574	#sed s+"# -g"+"-g"+g configure.wrf > yeah
575	mv -f yeah configure.wrf
576	fi
577
578
579	##################################################
580	# compile physics
581	##################################################
582	if [ ${donotcompilephys} -eq 0 ]
583	then
584
585	cd mars_lmd/
586
587	# required size
588	#----------------
589	case ${numproc} in
590	1) divx=1 ; divy=1 ;;
591	2) divx=1 ; divy=2 ;;
592	4) divx=2 ; divy=2 ;;
593	6) divx=2 ; divy=3 ;;
594	8) divx=2 ; divy=4 ;;
595	12) divx=3 ; divy=4 ;;
596	16) divx=4 ; divy=4 ;;
597	20) divx=4 ; divy=5 ;;
598	24) divx=4 ; divy=6 ;;
599	32) divx=4 ; divy=8 ;;
600	64) divx=8 ; divy=8 ;;
601	128) divx=8 ; divy=16 ;;
602	*) echo not yet supported ; exit ;;
603	esac
604	physx=$(expr ${lon} - 1)
605	restex=$(expr ${physx} \% ${divx})
606	physy=$(expr ${lat} - 1)
607	restey=$(expr ${physy} \% ${divy})
608	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
609	then
610	echo nx-1 shall be divided by ${divx}
611	echo ny-1 shall be divided by ${divy}
612	exit
613	fi
614	physx=$(expr ${physx} \/ ${divx})
615	physy=$(expr ${physy} \/ ${divy})
616	physz=$(expr ${level} - 1)
617
618	# change this if you change num_soil_layers in WRF
619	# -- default is 10
620	if [[ "${phys}" == "newphys_" ]]
621	then
622	soilsize=18 ## nouvelle physique
623	else
624	soilsize=10
625	fi
626
627	# GCM environment variables
628	#--------------------------
629	export LMDGCM=$PWD
630	export LIBOGCM=$PWD/libo
631
632	# generate the appropriate dimphys
633	#---------------------------------
634	cd libf/phymars
635	\rm dimphys.h 2> /dev/null
636	if [[ "${phys}" == "newphys_" ]]
637	then
638	ln -sf meso_inc/meso_dimphys.h_ref .
639	fi
640	physize=$(expr ${physx} \* ${physy})
641	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
642	head -15 dimphys.h
643	### TEST new new phys
644	if [[ "${phys}" == "newphys_" ]]
645	then
646	touch gr_fi_dyn.F.lien
647	ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
648	###############################
649	\rm scatterers.h
650	cat << EOF > scatterers.h
651	!-----------------------------------------------------------------------
652	! INCLUDE 'scatterers.h'
653	!
654	! Number of kind of tracer radiative properties
655	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
656	! (ex: naerkind=1 if you use one dust mode without ice ...)
657	! (ex: naerkind=2 if you use one dust mode and active ice ...)
658	!-----------------------------------------------------------------------
659
660	integer, parameter :: naerkind=${scat}
661
662	!-----------------------------------------------------------------------
663	EOF
664	###############################
665	###############################
666	fi
667	###
668	###
669	cd ../..
670
671	# prepare for nesting
672	#---------------------
673	cd libf
674	duplicate${dom} 2> /dev/null
675	cd ..
676
677	# compile physics
678	#--------------------------
679	\rm libf/grid/dimensions.h 2> /dev/null
680	\rm -rf libo/* 2> /dev/null
681	echo 1. compiling LMD physics ...
682	echo compilation info in:
683	echo $PWD/libo/log_compile_phys
684
685	if [ ${debug} -ne 0 ]
686	then
687	echo 'DEBUG DEBUG DEBUG DEBUG'
688	nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
689	else
690	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
691	fi
692	echo ... done
693	# clean the duplicate routines
694	cd libf
695	duplicate1 2> /dev/null
696	cd ..
697
698	# merge LMD executables in one lib
699	#--------------------------------------
700	cd libo
701	mkdir temp
702	#cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp
703	cp -f LINUX/.a temp/
704	cd temp
705	ar x libbibio.a
706	ar x libphymars.a
707	ar x libaeronomars.a
708	\rm *.a
709	ar r liblmd.a *
710	cp -f liblmd.a ..
711	cd ..
712	\rm -r temp
713	nm liblmd.a > liblmd_content
714	# finish merge
715	cd ..
716
717	# save a copy
718	#--------------
719	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}_${scat}
720	echo '****************************************'
721
722	# ok
723	#----
724	cd ..
725
726	# manage nest includes in module_lmd_driver.F
727	#----
728	cp call_meso_inifis$dom.inc call_meso_inifis.inc
729	cp call_meso_physiq$dom.inc call_meso_physiq.inc
730
731
732	fi
733	##################################################
734	# END compile physics
735	##################################################
736
737	#------------------
738	# compile WRF
739	#------------------
740	if [ ${justphys} -eq 0 ]
741	then
742
743	echo 2. compiling WRF dynamical core ...
744
745	if [[ "${phys}" == "nophys_" ]]
746	then
747	echo 'NO LMD PHYSICS included'
748	else
749	if [[ ! ( -f "call_meso_physiq.inc" ) ]]
750	then
751	echo 'did you compile the physics ? no call_meso_physiq.inc !'
752	exit
753	fi
754	fi
755
756	# be sure to compile with the most recent physics
757	touch phys/module_lmd_driver.F
758
759	# talk to user
760	echo '>>> compiling ... this may be long ... <<<'
761	echo check progress in:
762	echo $PWD/log_compile
763	echo check possible errors in:
764	echo $PWD/log_error
765
766	# compile ...
767	case ${config} in
768	'') ./compile em_real > log_compile 2> log_error
769	# save executables
770	cd main
771	if [[ -f real.exe ]]
772	then
773	echo 'Looks good ! real.exe is here...'
774	fi
775	if [[ -f wrf.exe ]]
776	then
777	echo 'Looks good ! wrf.exe is here...'
778	fi
779	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
780	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
781	cd .. ;;
782	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
783	echo '>>> YOUR CONFIG IS : '${config}
784	./compile em_quarter_ss > log_compile 2> log_error
785	# save executables
786	cd main
787	if [[ -f ideal.exe ]]
788	then
789	echo 'Looks good ! ideal.exe is here...'
790	fi
791	if [[ -f wrf.exe ]]
792	then
793	echo 'Looks good ! wrf.exe is here...'
794	fi
795	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
796	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
797	cd .. ;;
798	'les') echo '>>> YOUR CONFIG IS : '${config}
799	mkdir 'test/em_les' 2> /dev/null
800	./compile em_les > log_compile 2> log_error
801	# save executables
802	cd main
803	if [[ -f ideal.exe ]]
804	then
805	echo 'Looks good ! ideal.exe is here...'
806	fi
807	if [[ -f wrf.exe ]]
808	then
809	echo 'Looks good ! wrf.exe is here...'
810	fi
811	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
812	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
813	cd .. ;;
814	*) echo not supported... please use ; echo ideal les ; exit ;;
815	esac
816	echo '*****last lines from log_error*******'
817	tail -n 20 log_error
818	fi
819
820	# the end
821	echo '****************************************'
822	echo 'done.'
823	echo '****************************************'
824	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}
825	mv last ../../
826	svn info ../../ > ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.svn.info
827
828	# add here specific messages
829	if [[ "${dom}" != "1" ]]
830	then
831	nest=$(expr ${lon} + 4)
832	echo NB: in namelist.input, please set:
833	echo '
834	max_dom = '$dom'
835	s_we = 1,1,
836	e_we = '$lon','$nest',
837	s_sn = 1,1,
838	e_sn = '$lat','$nest',
839	s_vert = 1,1,
840	e_vert = '$level','$level','
841	fi
842

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