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makemeso @ 1486

Last change on this file since 1486 was 1448, checked in by aslmd, 9 years ago
MESOSCALE. include version of code. changed link to LATEST.
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File size: 35.9 KB

Rev	Line
[11]	1	#! /bin/bash
	2
	3
	4	##################################
	5	# makemeso allows you to compile #
	6	# WRF with modified LMD physics #
	7	##################################
	8
	9	##############################
	10	# Author: A. Spiga #
	11	# New version : October 2008 #
	12	# Last update : January 2009 #
	13	# November 09 #
[29]	14	# January 11 #
[11]	15	##############################
	16
[68]	17	###############################
	18	#### Type makemeso -h for help
	19	###############################
[11]	20
	21
	22
	23	##############################################################################################
	24	##############################################################################################
	25	##############################################################################################
	26	##############################################################################################
	27
	28	donotcompile=0
	29	donotallow=0
[142]	30	config=''
[11]	31	donotcompilephys=0
	32	justphys=0
	33	debug=0
[54]	34	fresh_start=0
[29]	35	phys=""
[118]	36	scenario=""
[1038]	37	from_scratch=0
[1440]	38
[1038]	39	while getopts "drc:njhgpfs:xe" options; do
[11]	40	case $options in
[118]	41	d ) donotcompile=1;; ## just to check the compile folder
	42	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
	43	c ) config="${OPTARG}";; ## idealized cases
	44	n ) donotcompilephys=1;; ## do not recompile physics
	45	j ) justphys=1;; ## just compile LMD physics
	46	g ) debug=1;; ## debug mode
	47	p ) phys="newphys_";; ## with new physics
	48	f ) fresh_start=1;; ## a fresh start
[1038]	49	e ) from_scratch=1;; ## a fresh start with a completely new folder
[1411]	50	s ) scenario="${OPTARG}";; ## a specific scenario (with precompiling flags)
[157]	51	x ) donotcompile=1;phys="nophys_";donotcompilephys=1;; ## a case with no LMD physics included
[11]	52	h ) echo "
	53	# Use:
	54	#
[142]	55	# makemeso ## basic use (real-case configuration)
[11]	56	#
	57	# makemeso -d ## no compilation, just check the name of the compile folder
	58	#
[68]	59	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
[142]	60	# makemeso -c les ## large-eddy simulations mode based on WRFV3
[11]	61	#
[70]	62	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
[68]	63	#
[11]	64	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
	65	# makemeso -r < last ## basic use + skip questions + only known config
	66	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
	67	#
	68	# makemeso -j ## just compile the LMD physics
	69	#
	70	# makemeso -g ## debug mode
	71	#
	72	# makemeso -h ## display options
[29]	73	#
	74	# makemeso -p ## with new LMD physics
[54]	75	#
	76	# makemeso -f ## fresh start [clean -a]
[118]	77	#
[1038]	78	# makemeso -e ## a completely new recompile with erasing ALL compiling folder
	79	#
[1411]	80	# makemeso -s DUSTSTORM ## a specific scenario (with precompiling flags)
[156]	81	#
	82	# makemeso -x ## a case with no LMD physics included
[11]	83	" ; exit ;;
	84	esac
	85	done
	86
	87	#--------------
	88	# talk w/ user
	89	#--------------
	90	echo '****************************************'
	91	echo ' LMD Mesoscale Model Compiler. Welcome.'
	92	echo '****************************************'
[29]	93	if [[ "${phys}" == "newphys_" ]]
	94	then
	95	echo '*********with new physics***********'
	96	echo '****************************************'
	97	fi
[11]	98	# computer
	99	uname -a \| grep x86_64 > /dev/null
	100	if [[ "$?" == 0 ]]
	101	then
	102	machine='64'
	103	else
	104	machine='32'
	105	fi
	106	# compiler
	107	echo "Supported compiler options are "
	108	echo " <1> pgf90"
	109	echo " <2> g95"
	110	echo " <3> pgf90 + mpi"
	111	echo " <4> ifort"
	112	echo " <5> ifort + mpi"
	113	echo " <7> xlf + mpi (IBM AIX)"
	114	echo "Your choice ?" ; read reply
	115	case ${reply} in
	116	1) compilo='pgf' ; numproc=1 ;;
	117	2) compilo='g95' ; numproc=1 ;;
	118	3) compilo='mpi'
[1236]	119	if [[ "${WHERE_MPI}" = "" ]]
[11]	120	then
	121	echo Please initialize the variable WHERE_MPI in your environnement
	122	exit
[1236]	123	fi ;;
[11]	124	4) compilo='ifort' ; numproc=1 ;;
[1236]	125	5) compilo='mpifort' ;;
	126	7) compilo='mpixlf' ;;
	127	### for tests
	128	99) compilo='gnu' ; numproc=1 ;;
[11]	129	*) echo not supported by this script ; exit ;;
	130	esac
[1236]	131	# number of processors
[1389]	132	if [ "${phys}" == "newphys_" ] \|\| [ "${phys}" == "nophys_" ]
[1236]	133	then
	134	numproc=999
	135	else
	136	case ${reply} in
	137	3) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
	138	5) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
	139	7) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
	140	esac
	141	fi
	142
[11]	143	# dimensions
	144	if [ ${donotcompile} -eq 0 ]
	145	then
[1212]	146	# ngrid: now dynamically set in newphys 03/2014
	147	if [[ "${phys}" == "newphys_" ]]
	148	then
	149	lon=999
	150	lat=999
[1272]	151	level=999
[1236]	152	else
	153	echo Grid points in longitude ? ; read lon
	154	echo Grid points in latitude ? ; read lat
[1272]	155	echo Number of vertical levels ? ; read level
[1212]	156	fi
[11]	157	fi
	158	echo Number of domains ? ; read dom
	159
	160	###PB lecture dom si < last
	161
	162	case ${dom} in
	163	1) single='_single' ;;
	164	*) single='_nest' ;;
	165	esac
	166	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
	167	then
	168	single=''
	169	fi
	170
	171	testflag=''
	172	####
	173	#testflag='_test'
	174	####
	175
[142]	176	conf_wrf="${config}${scenario}${phys}${compilo}_${machine}${single}${testflag}"
[1234]	177
	178	if [ ${debug} -eq 1 ]
	179	then
	180	conf_wrf="debug_${conf_wrf}"
	181	fi
	182
[11]	183	\rm what_folder 2> /dev/null
	184	echo ${conf_wrf} > what_folder
	185	if [ ${donotcompile} -eq 1 ]
	186	then
	187	#\rm what_folder 2> /dev/null
	188	#echo '**********************'
	189	#echo '*** Your folder is ...'
	190	#echo '**********************'
	191	#echo ${conf_wrf} \| tee what_folder
	192	#cat what_folder
	193	#echo ${conf_wrf} > what_folder
	194	#echo ${reply} > what_compilo
	195	#echo ${numproc} > what_numproc
[157]	196	if [[ "${phys}" != "nophys_" ]]
	197	then
	198	exit
	199	fi
	200	else
[1212]	201	# tracers: now dynamically set in newphys 09/2013
[1038]	202	if [[ "${phys}" == "newphys_" ]]
	203	then
	204	tra=999
	205	else
[1236]	206	echo Number of tracers ? ; read tra
[1038]	207	if [ ${tra} -eq 0 ]
	208	then
	209	tra=1
	210	fi
[157]	211	fi
[11]	212	fi
[1038]	213	# 'from scratch' case
	214	if [ ${from_scratch} -eq 1 ]
	215	then
	216	echo "***** I ERASE THE FOLDER "${conf_wrf}
	217	\rm -rf ${conf_wrf}
	218	fi
[11]	219	# folder
	220	mkdir ${conf_wrf} 2> /dev/null
	221	if [[ "$?" == 0 ]]
	222	then
	223	echo new folder ... link sources
[29]	224	if [[ "${phys}" == "newphys_" ]]
	225	then
[247]	226	\rm copy_model_tmp > /dev/null 2> /dev/null
[1411]	227	sed s+"mars_lmd"+"mars_lmd_new"+g SRC/SCRIPTS/copy_model > copy_model_tmp
[142]	228	if [[ "${config}" == "les" ]]
	229	then
	230	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g copy_model_tmp > yeah
	231	mv yeah copy_model_tmp
	232	fi
[54]	233	chmod 755 copy_model_tmp
	234	./copy_model_tmp
	235	\rm copy_model_tmp
[215]	236	mv zeWRFV2 ${conf_wrf}/WRFV2
[54]	237	cd ${conf_wrf}/WRFV2
[1411]	238	ln -sf mars_lmd_new mars_lmd
	239	if [[ "${phys}" == "newphys_" ]]
	240	then
	241	if [[ "${config}" != "les" ]]
[118]	242	then
[1411]	243	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
[118]	244	else
[1411]	245	cp -L ../../SRC/LES/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
	246	fi
	247	fi
	248	cd phys
	249	ln -sf module_lmd_driver.F.new module_lmd_driver.F
	250	cd ..
[1212]	251
	252	# remove files adapted to parallel GCM and useless for mesoscale
	253	cd mars_lmd
	254	cd libf/phymars
	255	\rm tabfi* soil_settings* phyetat0* phyredem* iostart* writediagfi* mkstat* writediagsoil* eofdump* wstats* inistats* mod_*
[1214]	256	\rm iniphysiq* init_phys_lmdz* comgeomphy* planetwide_mod*
[1212]	257	mv ../dyn3d/control_mod.F90 .
	258	cd ../..
	259	cd ..
	260
[29]	261	else
[142]	262	if [[ "${config}" == "les" ]]
	263	then
[1389]	264	#### NB: With physics: LES folder // Without physics : LESnophys_ folder
	265	#### ---- because differences in 'modif' folder ----
	266	#sed s+"PWD/SRC/"+"PWD/SRC/LES$phys/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
	267	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
[142]	268	else
[216]	269	cp SRC/SCRIPTS/copy_model copy_model_tmp
[142]	270	fi
	271	chmod 755 copy_model_tmp
	272	./copy_model_tmp
	273	\rm copy_model_tmp
[235]	274	mv zeWRFV2 ${conf_wrf}/WRFV2
[54]	275	cd ${conf_wrf}/WRFV2
[856]	276	cd Registry ; ./Registry.bash ; cd ..
[54]	277	fi
[142]	278	#### sparadrap consequent a l'utilisation de copy_model pour les liens
	279	#### -- car alors il manque fftpack
	280	if [[ "${config}" == "les" ]]
[158]	281	then
[1389]	282	#if [[ "${phys}" == "nophys_" ]]
	283	#then
	284	# ## voir ci-dessus pour le folder
	285	# cp ../../SRC/LES$phys/correcfft ./
	286	#else
	287	# cp ../../SRC/LES/correcfft ./
	288	#fi
	289	cp ../../SRC/LES/correcfft ./
[142]	290	./correcfft
	291	\rm correcfft
	292	fi
[11]	293	else
	294	cd ${conf_wrf}/WRFV2
[54]	295	if [ ${fresh_start} -eq 1 ]
	296	then
	297	echo '*** FRESH START, I clean everything'
[318]	298	### clean the whole place
[54]	299	clean -a > /dev/null 2> /dev/null
[318]	300	### get a possibly modified registry !
[1411]	301	if [[ "${phys}" == "newphys_" ]]
[333]	302	then
[1411]	303	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
	304	else
	305	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
[333]	306	fi
[341]	307	if [[ "${config}" == "les" ]]
	308	then
	309	cp ../../SRC/LES/WRFV2/Registry/Registry.EM Registry/
	310	fi
[318]	311	### ensure the model will be recompiled from scratch with correct registry
[54]	312	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
[262]	313	# answer='y' ## a voir... pas si sur
	314	# else
	315	# if [[ "${phys}" != "nophys_" ]]
	316	# then
	317	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
	318	# case ${answer} in
	319	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
	320	# *) answer='no' ;;
	321	# esac
	322	# fi
[54]	323	fi
[11]	324	fi
[153]	325
[11]	326	# summary
	327	echo '**********************'
	328	echo '*** Your folder is ...'
	329	echo '**********************'
	330	echo ${conf_wrf}
	331	echo '**********************'
	332	echo '****************************************'
	333	echo so ...
	334	echo your computer is ${machine} bits
	335	echo ${compilo} is your compiler
	336	if [[ "${compilo}" = "mpi" ]]
	337	then
	338	echo MPICH is in ${WHERE_MPI}
	339	fi
[1272]	340	echo you have ${dom} domains
[153]	341	if [[ "${phys}" == "newphys_" ]]
	342	then
[1236]	343	echo number of processors can be changed without recompiling
	344	echo x points can be changed without recompiling
	345	echo y points can be changed without recompiling
[1272]	346	echo z points can be changed without recompiling
[1236]	347	echo number of tracers can be changed without recompiling
	348	else
	349	echo you will use ${numproc} processors
	350	echo you have ${lon} x points
	351	echo ' '${lat} y points
[1272]	352	echo ' '${level} z points
[1236]	353	echo ' '${tra} tracers
[153]	354	fi
[11]	355	echo '****************************************'
	356	# save answer
	357	\rm last 2> /dev/null
	358	touch last
	359	echo ${reply} >> last
[1236]	360	if [[ "${phys}" != "newphys_" ]]
	361	then
	362	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
	363	then
[11]	364	echo ${numproc} >> last
[1236]	365	fi
	366	echo ${lon} >> last
	367	echo ${lat} >> last
[1272]	368	echo ${level} >> last
[1236]	369	fi
[11]	370	echo ${dom} >> last
[1236]	371	if [[ "${phys}" != "newphys_" ]]
	372	then
	373	echo ${tra} >> last
	374	fi
[11]	375
	376	#------------
	377	# log files
	378	#------------
	379	\rm log_compile 2> /dev/null
	380	\rm log_error 2> /dev/null
	381
	382	#-----------------
	383	# configure WRF
	384	#-----------------
	385	mv configure.wrf configure.wrf.bak 2> /dev/null
	386	########################
[30]	387	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
[142]	388
	389	#### in this case options are different because for LES, WRFV3 is used
	390	if [[ "${config}" == "les" ]]
	391	then
	392	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
	393	fi
	394
[30]	395	case ${conf_wrf_forall} in
[142]	396
	397	#######LES-specific (WRFV3-based) -- previously in 'makeles'
	398	#######
	399
	400	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
	401	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
	402	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
	403	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	404	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
	405	then
	406	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
	407	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	408	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[158]	409	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	410	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[142]	411	else
[390]	412	#sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	413	#sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	414	#### OPENMPI
	415	sed s+"mpif90 -f90=\$(SFC)"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	416	sed s+"mpicc -cc=\$(SCC)"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[142]	417	fi
	418	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	419	### pas forcement necessaire ici mais OK
	420	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	421	\rm conf > /dev/null ;;
	422
	423	lesmpifort_64) ## MPI (dm) 64 bits IFORT
	424	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
	425	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
	426	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	427	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	428	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	429	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
[666]	430	sed s+"O3"+"O3 -mcmodel=large -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[142]	431	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[674]	432	if [ ${debug} -ne 0 ] # not working for xlf!
	433	then
	434	echo 'DEBUG DEBUG DEBUG DEBUG'
[790]	435	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
[674]	436	mv -f yeah configure.wrf
	437	fi
[142]	438	\rm conf > /dev/null ;;
	439
	440	#######
	441	#######LES-specific (WRFV3-based) -- previously in 'makeles'
	442
[11]	443	#######TEST TEST
	444	# GFORTRAN, 64 bits, no nesting
	445	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
	446	echo 15 \| configure > log_compile 2> log_error
	447	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	448	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	449	#######TEST TEST
	450	# PGF90, 32 bits, no nesting
	451	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
	452	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	453	# PGF90, 32 bits, nesting
	454	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
	455	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	456	# PGF90, 64 bits, no nesting
	457	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
[330]	458	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
	459	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[11]	460	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	461	# PGF90, 64 bits, nesting
	462	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	463	echo 4 \| configure > log_compile 2> log_error
	464	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	465	# G95, 32 bits, no nesting
	466	g95_32_single) echo 13 \| configure > log_compile 2> log_error
	467	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[24]	468	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
	469	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
	470	echo 14 \| configure > log_compile 2> log_error
[330]	471	##### marche pas ....
	472	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
	473	#sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	474	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[24]	475	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	476	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
[11]	477	# IFORT, 64 bits, no nesting
	478	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
	479	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
[674]	480	if [ ${debug} -ne 0 ] # not working for xlf!
	481	then
	482	echo 'DEBUG DEBUG DEBUG DEBUG'
[790]	483	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
[674]	484	mv -f yeah configure.wrf
	485	fi
[11]	486	## !!! NETCDF must be defined
	487	sed s+"lio_grib_share"+"lio_grib_share -L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
	488	mv -f yeah configure.wrf ;;
	489	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
	490	echo 9 \| configure > log_compile 2> log_error
	491	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	492	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	493	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	494	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
[1440]	495	sed s+"-O1"+"-O1 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	496	sed s+"-O2"+"-O2 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	497	sed s+"-O3"+"-O3 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[674]	498	if [ ${debug} -ne 0 ] # not working for xlf!
	499	then
	500	echo 'DEBUG DEBUG DEBUG DEBUG'
[790]	501	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
[674]	502	mv -f yeah configure.wrf
	503	fi
[11]	504	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	505	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
	506	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
	507	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
	508	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
	509	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	510	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	511	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	512	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	513	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	514	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	515	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	516	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	517	### necessary even if mpi-selector is used (no need in makegcm though)
	518	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
	519	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	520	## !!! NETCDF must be defined
	521	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
[70]	522	mv -f yeah configure.wrf
	523	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
[71]	524	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
[11]	525	mv -f yeah configure.wrf ;;
	526	# MPICH, 64 bits, no nesting / nesting
	527	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	528	echo 3 \| configure > log_compile 2> log_error
	529	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
[227]	530	### the following line is necessary because readtesassim has a line "use netcdf" in it!
	531	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[11]	532	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
[341]	533	#sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT -w -O3"+g > yeah
[11]	534	#\| sed s+"fastsse"+"fast"+g > yeah
[341]	535	mv -f yeah configure.wrf ;;
[335]	536	# #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
	537	# ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
	538	# ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
	539	#sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah
	540	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
[341]	541	#sed s+"-fastsse"+""+g configure.wrf > yeah
	542	#sed s+"-fastsse"+"-fast"+g configure.wrf > yeah
	543	#sed s+"-fastsse"+"-Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8 -Mfprelaxed"+g configure.wrf > yeah
	544	#mv -f yeah configure.wrf ;;
[11]	545	# MPICH, 64 bits, OK with periodic BC but no positive definite
	546	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	547	echo 2 \| configure > log_compile 2> log_error
	548	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	549	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
	550	mv -f yeah configure.wrf ;;
	551	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
	552	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	553	echo 3 \| configure > log_compile 2> log_error
	554	sed -f mars.sed configure.wrf > yeah
	555	mv -f yeah configure.wrf ;;
	556	# ANYTHING ELSE
	557	*) echo NO PRESETS ...
	558	if [ ${donotallow} -eq 0 ]
	559	then
	560	configure
	561	else
	562	# problem when an input file is used
	563	echo 'please cd to '$PWD' and type ./configure'
	564	exit
	565	fi ;;
	566	esac
	567	########################
	568
[142]	569
[156]	570	### here a case structure would be great
	571
[29]	572	if [[ "${phys}" == "newphys_" ]]
	573	then
[142]	574	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
	575	then
	576	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
	577	else
	578	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
	579	fi
[29]	580	mv -f yeah configure.wrf
	581	fi
[11]	582
[1411]	583	### SCENARIO SCENARIO SCENARIO
	584	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment?
[118]	585	then
[1411]	586	# precompiling flag in WRF part
[118]	587	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
	588	mv -f yeah configure.wrf
[1411]	589	# precompiling flag in LMD part
	590	cd mars_lmd
	591	cp -Lrf makegcm_${compilo} yeah
	592	\rm makegcm_${compilo}
	593	sed s+"-DMESOSCALE"+"-D${scenario} -DMESOSCALE"+ yeah > makegcm_${compilo}
	594	chmod 755 makegcm_${compilo}
	595	\rm yeah
	596	cd ..
[118]	597	fi
	598
[156]	599	################
	600	if [[ "${phys}" == "nophys_" ]]
	601	then
	602	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
	603	then
	604	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	605	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
	606	else
	607	### not tested yet but should be working
	608	echo CAUTION CAUTION CAUTION NOT FULLY TESTED
	609	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	610	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
	611	fi
	612	fi
	613	################
	614
[11]	615	if [ ${debug} -ne 0 ] # not working for xlf!
	616	then
	617	echo 'DEBUG DEBUG DEBUG DEBUG'
[790]	618	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
	619	#sed s+"# -g"+"-g -Ktrap=fp -Mbounds"+g configure.wrf > yeah
	620	#sed s+"# -g"+"-g"+g configure.wrf > yeah
[11]	621	mv -f yeah configure.wrf
	622	fi
	623
	624
	625	##################################################
	626	# compile physics
	627	##################################################
	628	if [ ${donotcompilephys} -eq 0 ]
	629	then
	630
	631	cd mars_lmd/
	632
[1212]	633	if [[ "${phys}" == "newphys_" ]]
	634	then
	635	divx=1
	636	divy=1
	637	else
[11]	638	# required size
	639	#----------------
	640	case ${numproc} in
[239]	641	1) divx=1 ; divy=1 ;;
	642	2) divx=1 ; divy=2 ;;
	643	4) divx=2 ; divy=2 ;;
	644	6) divx=2 ; divy=3 ;;
	645	8) divx=2 ; divy=4 ;;
	646	12) divx=3 ; divy=4 ;;
	647	16) divx=4 ; divy=4 ;;
	648	20) divx=4 ; divy=5 ;;
	649	24) divx=4 ; divy=6 ;;
	650	32) divx=4 ; divy=8 ;;
	651	64) divx=8 ; divy=8 ;;
	652	128) divx=8 ; divy=16 ;;
	653	*) echo not yet supported ; exit ;;
[11]	654	esac
[1212]	655	fi
[240]	656	physx=$(expr ${lon} - 1)
	657	restex=$(expr ${physx} \% ${divx})
	658	physy=$(expr ${lat} - 1)
	659	restey=$(expr ${physy} \% ${divy})
[239]	660	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
	661	then
	662	echo nx-1 shall be divided by ${divx}
	663	echo ny-1 shall be divided by ${divy}
	664	exit
	665	fi
[240]	666	physx=$(expr ${physx} \/ ${divx})
	667	physy=$(expr ${physy} \/ ${divy})
[239]	668	physz=$(expr ${level} - 1)
[11]	669
	670	# change this if you change num_soil_layers in WRF
	671	# -- default is 10
[30]	672	if [[ "${phys}" == "newphys_" ]]
	673	then
[1212]	674	soilsize=18 ## nouvelle physique. ne sert a rien ici. voir comsoil.
[30]	675	else
	676	soilsize=10
	677	fi
[11]	678
	679	# GCM environment variables
	680	#--------------------------
	681	export LMDGCM=$PWD
	682	export LIBOGCM=$PWD/libo
	683
	684	# generate the appropriate dimphys
	685	#---------------------------------
	686	cd libf/phymars
	687	\rm dimphys.h 2> /dev/null
[235]	688	if [[ "${phys}" == "newphys_" ]]
	689	then
[1272]	690	ln -sf ../../meso_dimphys.h_ref . ## ne sert plus !!
	691	else
	692	physize=$(expr ${physx} \* ${physy})
	693	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
	694	head -15 dimphys.h
[235]	695	fi
[42]	696	### TEST new new phys
	697	if [[ "${phys}" == "newphys_" ]]
	698	then
[50]	699	touch gr_fi_dyn.F.lien
[227]	700	ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
[153]	701	###############################
	702	###############################
	703	###############################
[42]	704	fi
	705	###
	706	###
[11]	707	cd ../..
	708
	709	# prepare for nesting
	710	#---------------------
	711	cd libf
	712	duplicate${dom} 2> /dev/null
	713	cd ..
	714
	715	# compile physics
	716	#--------------------------
	717	\rm libf/grid/dimensions.h 2> /dev/null
	718	\rm -rf libo/* 2> /dev/null
	719	echo 1. compiling LMD physics ...
	720	echo compilation info in:
	721	echo $PWD/libo/log_compile_phys
	722
	723	if [ ${debug} -ne 0 ]
	724	then
	725	echo 'DEBUG DEBUG DEBUG DEBUG'
[86]	726	nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
[11]	727	else
[86]	728	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
[11]	729	fi
	730	echo ... done
	731	# clean the duplicate routines
	732	cd libf
	733	duplicate1 2> /dev/null
	734	cd ..
	735
	736	# merge LMD executables in one lib
	737	#--------------------------------------
	738	cd libo
	739	mkdir temp
	740	#cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp
[1038]	741	cp -f LINUX/.a temp/
[11]	742	cd temp
	743	ar x libbibio.a
	744	ar x libphymars.a
	745	ar x libaeronomars.a
	746	\rm *.a
	747	ar r liblmd.a *
	748	cp -f liblmd.a ..
	749	cd ..
	750	\rm -r temp
	751	nm liblmd.a > liblmd_content
	752	# finish merge
	753	cd ..
	754
[1234]	755	if [[ "${phys}" == "newphys_" ]]
	756	then
	757	# include modules for interfacing
	758	mv *.mod ../inc/
	759	fi
	760
[11]	761	# save a copy
	762	#--------------
[1247]	763	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}
[11]	764	echo '****************************************'
	765
	766	# ok
	767	#----
	768	cd ..
	769
	770	# manage nest includes in module_lmd_driver.F
	771	#----
	772	cp call_meso_inifis$dom.inc call_meso_inifis.inc
	773	cp call_meso_physiq$dom.inc call_meso_physiq.inc
	774
	775
	776	fi
	777	##################################################
	778	# END compile physics
	779	##################################################
	780
	781	#------------------
	782	# compile WRF
	783	#------------------
	784	if [ ${justphys} -eq 0 ]
	785	then
	786
	787	echo 2. compiling WRF dynamical core ...
	788
[156]	789	if [[ "${phys}" == "nophys_" ]]
[11]	790	then
[156]	791	echo 'NO LMD PHYSICS included'
	792	else
	793	if [[ ! ( -f "call_meso_physiq.inc" ) ]]
	794	then
	795	echo 'did you compile the physics ? no call_meso_physiq.inc !'
	796	exit
	797	fi
[11]	798	fi
	799
	800	# be sure to compile with the most recent physics
	801	touch phys/module_lmd_driver.F
	802
	803	# talk to user
	804	echo '>>> compiling ... this may be long ... <<<'
	805	echo check progress in:
	806	echo $PWD/log_compile
	807	echo check possible errors in:
	808	echo $PWD/log_error
	809
	810	# compile ...
	811	case ${config} in
[421]	812	'') ./compile em_real > log_compile 2> log_error
[11]	813	# save executables
	814	cd main
[68]	815	if [[ -f real.exe ]]
	816	then
	817	echo 'Looks good ! real.exe is here...'
	818	fi
[11]	819	if [[ -f wrf.exe ]]
	820	then
	821	echo 'Looks good ! wrf.exe is here...'
	822	fi
[1247]	823	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
	824	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
[11]	825	cd .. ;;
[68]	826	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
[142]	827	echo '>>> YOUR CONFIG IS : '${config}
[421]	828	./compile em_quarter_ss > log_compile 2> log_error
[11]	829	# save executables
	830	cd main
[68]	831	if [[ -f ideal.exe ]]
	832	then
	833	echo 'Looks good ! ideal.exe is here...'
	834	fi
[11]	835	if [[ -f wrf.exe ]]
	836	then
	837	echo 'Looks good ! wrf.exe is here...'
	838	fi
[1247]	839	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
	840	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
[11]	841	cd .. ;;
[142]	842	'les') echo '>>> YOUR CONFIG IS : '${config}
	843	mkdir 'test/em_les' 2> /dev/null
[421]	844	./compile em_les > log_compile 2> log_error
[142]	845	# save executables
	846	cd main
	847	if [[ -f ideal.exe ]]
	848	then
	849	echo 'Looks good ! ideal.exe is here...'
	850	fi
	851	if [[ -f wrf.exe ]]
	852	then
	853	echo 'Looks good ! wrf.exe is here...'
	854	fi
[1247]	855	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
	856	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
[142]	857	cd .. ;;
	858	*) echo not supported... please use ; echo ideal les ; exit ;;
[11]	859	esac
	860	echo '*****last lines from log_error*******'
	861	tail -n 20 log_error
	862	fi
	863
	864	# the end
	865	echo '****************************************'
	866	echo 'done.'
	867	echo '****************************************'
[1247]	868	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}
[11]	869	mv last ../../
[1247]	870	svn info ../../ > ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.svn.info
[11]	871
[1445]	872
	873
	874	# link latest compiled folder as LATEST
	875	cd ../../
[1448]	876	rm -rf LATEST
[1445]	877	ln -sf ${conf_wrf} LATEST
	878
[11]	879	# add here specific messages
	880	if [[ "${dom}" != "1" ]]
	881	then
	882	nest=$(expr ${lon} + 4)
	883	echo NB: in namelist.input, please set:
	884	echo '
	885	max_dom = '$dom'
	886	s_we = 1,1,
	887	e_we = '$lon','$nest',
	888	s_sn = 1,1,
	889	e_sn = '$lat','$nest',
	890	s_vert = 1,1,
	891	e_vert = '$level','$level','
	892	fi
	893

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