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makemeso @ 1486

Last change on this file since 1486 was 1448, checked in by aslmd, 9 years ago
MESOSCALE. include version of code. changed link to LATEST.
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Line
1	#! /bin/bash
2
3
4	##################################
5	# makemeso allows you to compile #
6	# WRF with modified LMD physics #
7	##################################
8
9	##############################
10	# Author: A. Spiga #
11	# New version : October 2008 #
12	# Last update : January 2009 #
13	# November 09 #
14	# January 11 #
15	##############################
16
17	###############################
18	#### Type makemeso -h for help
19	###############################
20
21
22
23	##############################################################################################
24	##############################################################################################
25	##############################################################################################
26	##############################################################################################
27
28	donotcompile=0
29	donotallow=0
30	config=''
31	donotcompilephys=0
32	justphys=0
33	debug=0
34	fresh_start=0
35	phys=""
36	scenario=""
37	from_scratch=0
38
39	while getopts "drc:njhgpfs:xe" options; do
40	case $options in
41	d ) donotcompile=1;; ## just to check the compile folder
42	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
43	c ) config="${OPTARG}";; ## idealized cases
44	n ) donotcompilephys=1;; ## do not recompile physics
45	j ) justphys=1;; ## just compile LMD physics
46	g ) debug=1;; ## debug mode
47	p ) phys="newphys_";; ## with new physics
48	f ) fresh_start=1;; ## a fresh start
49	e ) from_scratch=1;; ## a fresh start with a completely new folder
50	s ) scenario="${OPTARG}";; ## a specific scenario (with precompiling flags)
51	x ) donotcompile=1;phys="nophys_";donotcompilephys=1;; ## a case with no LMD physics included
52	h ) echo "
53	# Use:
54	#
55	# makemeso ## basic use (real-case configuration)
56	#
57	# makemeso -d ## no compilation, just check the name of the compile folder
58	#
59	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
60	# makemeso -c les ## large-eddy simulations mode based on WRFV3
61	#
62	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
63	#
64	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
65	# makemeso -r < last ## basic use + skip questions + only known config
66	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
67	#
68	# makemeso -j ## just compile the LMD physics
69	#
70	# makemeso -g ## debug mode
71	#
72	# makemeso -h ## display options
73	#
74	# makemeso -p ## with new LMD physics
75	#
76	# makemeso -f ## fresh start [clean -a]
77	#
78	# makemeso -e ## a completely new recompile with erasing ALL compiling folder
79	#
80	# makemeso -s DUSTSTORM ## a specific scenario (with precompiling flags)
81	#
82	# makemeso -x ## a case with no LMD physics included
83	" ; exit ;;
84	esac
85	done
86
87	#--------------
88	# talk w/ user
89	#--------------
90	echo '****************************************'
91	echo ' LMD Mesoscale Model Compiler. Welcome.'
92	echo '****************************************'
93	if [[ "${phys}" == "newphys_" ]]
94	then
95	echo '*********with new physics***********'
96	echo '****************************************'
97	fi
98	# computer
99	uname -a \| grep x86_64 > /dev/null
100	if [[ "$?" == 0 ]]
101	then
102	machine='64'
103	else
104	machine='32'
105	fi
106	# compiler
107	echo "Supported compiler options are "
108	echo " <1> pgf90"
109	echo " <2> g95"
110	echo " <3> pgf90 + mpi"
111	echo " <4> ifort"
112	echo " <5> ifort + mpi"
113	echo " <7> xlf + mpi (IBM AIX)"
114	echo "Your choice ?" ; read reply
115	case ${reply} in
116	1) compilo='pgf' ; numproc=1 ;;
117	2) compilo='g95' ; numproc=1 ;;
118	3) compilo='mpi'
119	if [[ "${WHERE_MPI}" = "" ]]
120	then
121	echo Please initialize the variable WHERE_MPI in your environnement
122	exit
123	fi ;;
124	4) compilo='ifort' ; numproc=1 ;;
125	5) compilo='mpifort' ;;
126	7) compilo='mpixlf' ;;
127	### for tests
128	99) compilo='gnu' ; numproc=1 ;;
129	*) echo not supported by this script ; exit ;;
130	esac
131	# number of processors
132	if [ "${phys}" == "newphys_" ] \|\| [ "${phys}" == "nophys_" ]
133	then
134	numproc=999
135	else
136	case ${reply} in
137	3) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
138	5) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
139	7) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
140	esac
141	fi
142
143	# dimensions
144	if [ ${donotcompile} -eq 0 ]
145	then
146	# ngrid: now dynamically set in newphys 03/2014
147	if [[ "${phys}" == "newphys_" ]]
148	then
149	lon=999
150	lat=999
151	level=999
152	else
153	echo Grid points in longitude ? ; read lon
154	echo Grid points in latitude ? ; read lat
155	echo Number of vertical levels ? ; read level
156	fi
157	fi
158	echo Number of domains ? ; read dom
159
160	###PB lecture dom si < last
161
162	case ${dom} in
163	1) single='_single' ;;
164	*) single='_nest' ;;
165	esac
166	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
167	then
168	single=''
169	fi
170
171	testflag=''
172	####
173	#testflag='_test'
174	####
175
176	conf_wrf="${config}${scenario}${phys}${compilo}_${machine}${single}${testflag}"
177
178	if [ ${debug} -eq 1 ]
179	then
180	conf_wrf="debug_${conf_wrf}"
181	fi
182
183	\rm what_folder 2> /dev/null
184	echo ${conf_wrf} > what_folder
185	if [ ${donotcompile} -eq 1 ]
186	then
187	#\rm what_folder 2> /dev/null
188	#echo '**********************'
189	#echo '*** Your folder is ...'
190	#echo '**********************'
191	#echo ${conf_wrf} \| tee what_folder
192	#cat what_folder
193	#echo ${conf_wrf} > what_folder
194	#echo ${reply} > what_compilo
195	#echo ${numproc} > what_numproc
196	if [[ "${phys}" != "nophys_" ]]
197	then
198	exit
199	fi
200	else
201	# tracers: now dynamically set in newphys 09/2013
202	if [[ "${phys}" == "newphys_" ]]
203	then
204	tra=999
205	else
206	echo Number of tracers ? ; read tra
207	if [ ${tra} -eq 0 ]
208	then
209	tra=1
210	fi
211	fi
212	fi
213	# 'from scratch' case
214	if [ ${from_scratch} -eq 1 ]
215	then
216	echo "***** I ERASE THE FOLDER "${conf_wrf}
217	\rm -rf ${conf_wrf}
218	fi
219	# folder
220	mkdir ${conf_wrf} 2> /dev/null
221	if [[ "$?" == 0 ]]
222	then
223	echo new folder ... link sources
224	if [[ "${phys}" == "newphys_" ]]
225	then
226	\rm copy_model_tmp > /dev/null 2> /dev/null
227	sed s+"mars_lmd"+"mars_lmd_new"+g SRC/SCRIPTS/copy_model > copy_model_tmp
228	if [[ "${config}" == "les" ]]
229	then
230	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g copy_model_tmp > yeah
231	mv yeah copy_model_tmp
232	fi
233	chmod 755 copy_model_tmp
234	./copy_model_tmp
235	\rm copy_model_tmp
236	mv zeWRFV2 ${conf_wrf}/WRFV2
237	cd ${conf_wrf}/WRFV2
238	ln -sf mars_lmd_new mars_lmd
239	if [[ "${phys}" == "newphys_" ]]
240	then
241	if [[ "${config}" != "les" ]]
242	then
243	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
244	else
245	cp -L ../../SRC/LES/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
246	fi
247	fi
248	cd phys
249	ln -sf module_lmd_driver.F.new module_lmd_driver.F
250	cd ..
251
252	# remove files adapted to parallel GCM and useless for mesoscale
253	cd mars_lmd
254	cd libf/phymars
255	\rm tabfi* soil_settings* phyetat0* phyredem* iostart* writediagfi* mkstat* writediagsoil* eofdump* wstats* inistats* mod_*
256	\rm iniphysiq* init_phys_lmdz* comgeomphy* planetwide_mod*
257	mv ../dyn3d/control_mod.F90 .
258	cd ../..
259	cd ..
260
261	else
262	if [[ "${config}" == "les" ]]
263	then
264	#### NB: With physics: LES folder // Without physics : LESnophys_ folder
265	#### ---- because differences in 'modif' folder ----
266	#sed s+"PWD/SRC/"+"PWD/SRC/LES$phys/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
267	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
268	else
269	cp SRC/SCRIPTS/copy_model copy_model_tmp
270	fi
271	chmod 755 copy_model_tmp
272	./copy_model_tmp
273	\rm copy_model_tmp
274	mv zeWRFV2 ${conf_wrf}/WRFV2
275	cd ${conf_wrf}/WRFV2
276	cd Registry ; ./Registry.bash ; cd ..
277	fi
278	#### sparadrap consequent a l'utilisation de copy_model pour les liens
279	#### -- car alors il manque fftpack
280	if [[ "${config}" == "les" ]]
281	then
282	#if [[ "${phys}" == "nophys_" ]]
283	#then
284	# ## voir ci-dessus pour le folder
285	# cp ../../SRC/LES$phys/correcfft ./
286	#else
287	# cp ../../SRC/LES/correcfft ./
288	#fi
289	cp ../../SRC/LES/correcfft ./
290	./correcfft
291	\rm correcfft
292	fi
293	else
294	cd ${conf_wrf}/WRFV2
295	if [ ${fresh_start} -eq 1 ]
296	then
297	echo '*** FRESH START, I clean everything'
298	### clean the whole place
299	clean -a > /dev/null 2> /dev/null
300	### get a possibly modified registry !
301	if [[ "${phys}" == "newphys_" ]]
302	then
303	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
304	else
305	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
306	fi
307	if [[ "${config}" == "les" ]]
308	then
309	cp ../../SRC/LES/WRFV2/Registry/Registry.EM Registry/
310	fi
311	### ensure the model will be recompiled from scratch with correct registry
312	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
313	# answer='y' ## a voir... pas si sur
314	# else
315	# if [[ "${phys}" != "nophys_" ]]
316	# then
317	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
318	# case ${answer} in
319	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
320	# *) answer='no' ;;
321	# esac
322	# fi
323	fi
324	fi
325
326	# summary
327	echo '**********************'
328	echo '*** Your folder is ...'
329	echo '**********************'
330	echo ${conf_wrf}
331	echo '**********************'
332	echo '****************************************'
333	echo so ...
334	echo your computer is ${machine} bits
335	echo ${compilo} is your compiler
336	if [[ "${compilo}" = "mpi" ]]
337	then
338	echo MPICH is in ${WHERE_MPI}
339	fi
340	echo you have ${dom} domains
341	if [[ "${phys}" == "newphys_" ]]
342	then
343	echo number of processors can be changed without recompiling
344	echo x points can be changed without recompiling
345	echo y points can be changed without recompiling
346	echo z points can be changed without recompiling
347	echo number of tracers can be changed without recompiling
348	else
349	echo you will use ${numproc} processors
350	echo you have ${lon} x points
351	echo ' '${lat} y points
352	echo ' '${level} z points
353	echo ' '${tra} tracers
354	fi
355	echo '****************************************'
356	# save answer
357	\rm last 2> /dev/null
358	touch last
359	echo ${reply} >> last
360	if [[ "${phys}" != "newphys_" ]]
361	then
362	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
363	then
364	echo ${numproc} >> last
365	fi
366	echo ${lon} >> last
367	echo ${lat} >> last
368	echo ${level} >> last
369	fi
370	echo ${dom} >> last
371	if [[ "${phys}" != "newphys_" ]]
372	then
373	echo ${tra} >> last
374	fi
375
376	#------------
377	# log files
378	#------------
379	\rm log_compile 2> /dev/null
380	\rm log_error 2> /dev/null
381
382	#-----------------
383	# configure WRF
384	#-----------------
385	mv configure.wrf configure.wrf.bak 2> /dev/null
386	########################
387	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
388
389	#### in this case options are different because for LES, WRFV3 is used
390	if [[ "${config}" == "les" ]]
391	then
392	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
393	fi
394
395	case ${conf_wrf_forall} in
396
397	#######LES-specific (WRFV3-based) -- previously in 'makeles'
398	#######
399
400	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
401	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
402	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
403	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
404	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
405	then
406	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
407	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
408	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
409	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
410	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
411	else
412	#sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
413	#sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
414	#### OPENMPI
415	sed s+"mpif90 -f90=\$(SFC)"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
416	sed s+"mpicc -cc=\$(SCC)"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
417	fi
418	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
419	### pas forcement necessaire ici mais OK
420	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
421	\rm conf > /dev/null ;;
422
423	lesmpifort_64) ## MPI (dm) 64 bits IFORT
424	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
425	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
426	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
427	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
428	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
429	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
430	sed s+"O3"+"O3 -mcmodel=large -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
431	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
432	if [ ${debug} -ne 0 ] # not working for xlf!
433	then
434	echo 'DEBUG DEBUG DEBUG DEBUG'
435	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
436	mv -f yeah configure.wrf
437	fi
438	\rm conf > /dev/null ;;
439
440	#######
441	#######LES-specific (WRFV3-based) -- previously in 'makeles'
442
443	#######TEST TEST
444	# GFORTRAN, 64 bits, no nesting
445	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
446	echo 15 \| configure > log_compile 2> log_error
447	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
448	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
449	#######TEST TEST
450	# PGF90, 32 bits, no nesting
451	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
452	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
453	# PGF90, 32 bits, nesting
454	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
455	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
456	# PGF90, 64 bits, no nesting
457	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
458	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
459	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
460	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
461	# PGF90, 64 bits, nesting
462	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
463	echo 4 \| configure > log_compile 2> log_error
464	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
465	# G95, 32 bits, no nesting
466	g95_32_single) echo 13 \| configure > log_compile 2> log_error
467	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
468	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
469	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
470	echo 14 \| configure > log_compile 2> log_error
471	##### marche pas ....
472	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
473	#sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
474	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
475	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
476	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
477	# IFORT, 64 bits, no nesting
478	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
479	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
480	if [ ${debug} -ne 0 ] # not working for xlf!
481	then
482	echo 'DEBUG DEBUG DEBUG DEBUG'
483	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
484	mv -f yeah configure.wrf
485	fi
486	## !!! NETCDF must be defined
487	sed s+"lio_grib_share"+"lio_grib_share -L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
488	mv -f yeah configure.wrf ;;
489	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
490	echo 9 \| configure > log_compile 2> log_error
491	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
492	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
493	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
494	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
495	sed s+"-O1"+"-O1 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
496	sed s+"-O2"+"-O2 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
497	sed s+"-O3"+"-O3 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
498	if [ ${debug} -ne 0 ] # not working for xlf!
499	then
500	echo 'DEBUG DEBUG DEBUG DEBUG'
501	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
502	mv -f yeah configure.wrf
503	fi
504	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
505	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
506	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
507	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
508	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
509	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
510	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
511	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
512	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
513	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
514	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
515	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
516	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
517	### necessary even if mpi-selector is used (no need in makegcm though)
518	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
519	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
520	## !!! NETCDF must be defined
521	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
522	mv -f yeah configure.wrf
523	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
524	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
525	mv -f yeah configure.wrf ;;
526	# MPICH, 64 bits, no nesting / nesting
527	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
528	echo 3 \| configure > log_compile 2> log_error
529	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
530	### the following line is necessary because readtesassim has a line "use netcdf" in it!
531	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
532	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
533	#sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT -w -O3"+g > yeah
534	#\| sed s+"fastsse"+"fast"+g > yeah
535	mv -f yeah configure.wrf ;;
536	# #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
537	# ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
538	# ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
539	#sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah
540	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
541	#sed s+"-fastsse"+""+g configure.wrf > yeah
542	#sed s+"-fastsse"+"-fast"+g configure.wrf > yeah
543	#sed s+"-fastsse"+"-Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8 -Mfprelaxed"+g configure.wrf > yeah
544	#mv -f yeah configure.wrf ;;
545	# MPICH, 64 bits, OK with periodic BC but no positive definite
546	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
547	echo 2 \| configure > log_compile 2> log_error
548	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
549	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
550	mv -f yeah configure.wrf ;;
551	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
552	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
553	echo 3 \| configure > log_compile 2> log_error
554	sed -f mars.sed configure.wrf > yeah
555	mv -f yeah configure.wrf ;;
556	# ANYTHING ELSE
557	*) echo NO PRESETS ...
558	if [ ${donotallow} -eq 0 ]
559	then
560	configure
561	else
562	# problem when an input file is used
563	echo 'please cd to '$PWD' and type ./configure'
564	exit
565	fi ;;
566	esac
567	########################
568
569
570	### here a case structure would be great
571
572	if [[ "${phys}" == "newphys_" ]]
573	then
574	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
575	then
576	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
577	else
578	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
579	fi
580	mv -f yeah configure.wrf
581	fi
582
583	### SCENARIO SCENARIO SCENARIO
584	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment?
585	then
586	# precompiling flag in WRF part
587	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
588	mv -f yeah configure.wrf
589	# precompiling flag in LMD part
590	cd mars_lmd
591	cp -Lrf makegcm_${compilo} yeah
592	\rm makegcm_${compilo}
593	sed s+"-DMESOSCALE"+"-D${scenario} -DMESOSCALE"+ yeah > makegcm_${compilo}
594	chmod 755 makegcm_${compilo}
595	\rm yeah
596	cd ..
597	fi
598
599	################
600	if [[ "${phys}" == "nophys_" ]]
601	then
602	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
603	then
604	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
605	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
606	else
607	### not tested yet but should be working
608	echo CAUTION CAUTION CAUTION NOT FULLY TESTED
609	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
610	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
611	fi
612	fi
613	################
614
615	if [ ${debug} -ne 0 ] # not working for xlf!
616	then
617	echo 'DEBUG DEBUG DEBUG DEBUG'
618	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
619	#sed s+"# -g"+"-g -Ktrap=fp -Mbounds"+g configure.wrf > yeah
620	#sed s+"# -g"+"-g"+g configure.wrf > yeah
621	mv -f yeah configure.wrf
622	fi
623
624
625	##################################################
626	# compile physics
627	##################################################
628	if [ ${donotcompilephys} -eq 0 ]
629	then
630
631	cd mars_lmd/
632
633	if [[ "${phys}" == "newphys_" ]]
634	then
635	divx=1
636	divy=1
637	else
638	# required size
639	#----------------
640	case ${numproc} in
641	1) divx=1 ; divy=1 ;;
642	2) divx=1 ; divy=2 ;;
643	4) divx=2 ; divy=2 ;;
644	6) divx=2 ; divy=3 ;;
645	8) divx=2 ; divy=4 ;;
646	12) divx=3 ; divy=4 ;;
647	16) divx=4 ; divy=4 ;;
648	20) divx=4 ; divy=5 ;;
649	24) divx=4 ; divy=6 ;;
650	32) divx=4 ; divy=8 ;;
651	64) divx=8 ; divy=8 ;;
652	128) divx=8 ; divy=16 ;;
653	*) echo not yet supported ; exit ;;
654	esac
655	fi
656	physx=$(expr ${lon} - 1)
657	restex=$(expr ${physx} \% ${divx})
658	physy=$(expr ${lat} - 1)
659	restey=$(expr ${physy} \% ${divy})
660	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
661	then
662	echo nx-1 shall be divided by ${divx}
663	echo ny-1 shall be divided by ${divy}
664	exit
665	fi
666	physx=$(expr ${physx} \/ ${divx})
667	physy=$(expr ${physy} \/ ${divy})
668	physz=$(expr ${level} - 1)
669
670	# change this if you change num_soil_layers in WRF
671	# -- default is 10
672	if [[ "${phys}" == "newphys_" ]]
673	then
674	soilsize=18 ## nouvelle physique. ne sert a rien ici. voir comsoil.
675	else
676	soilsize=10
677	fi
678
679	# GCM environment variables
680	#--------------------------
681	export LMDGCM=$PWD
682	export LIBOGCM=$PWD/libo
683
684	# generate the appropriate dimphys
685	#---------------------------------
686	cd libf/phymars
687	\rm dimphys.h 2> /dev/null
688	if [[ "${phys}" == "newphys_" ]]
689	then
690	ln -sf ../../meso_dimphys.h_ref . ## ne sert plus !!
691	else
692	physize=$(expr ${physx} \* ${physy})
693	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
694	head -15 dimphys.h
695	fi
696	### TEST new new phys
697	if [[ "${phys}" == "newphys_" ]]
698	then
699	touch gr_fi_dyn.F.lien
700	ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
701	###############################
702	###############################
703	###############################
704	fi
705	###
706	###
707	cd ../..
708
709	# prepare for nesting
710	#---------------------
711	cd libf
712	duplicate${dom} 2> /dev/null
713	cd ..
714
715	# compile physics
716	#--------------------------
717	\rm libf/grid/dimensions.h 2> /dev/null
718	\rm -rf libo/* 2> /dev/null
719	echo 1. compiling LMD physics ...
720	echo compilation info in:
721	echo $PWD/libo/log_compile_phys
722
723	if [ ${debug} -ne 0 ]
724	then
725	echo 'DEBUG DEBUG DEBUG DEBUG'
726	nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
727	else
728	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
729	fi
730	echo ... done
731	# clean the duplicate routines
732	cd libf
733	duplicate1 2> /dev/null
734	cd ..
735
736	# merge LMD executables in one lib
737	#--------------------------------------
738	cd libo
739	mkdir temp
740	#cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp
741	cp -f LINUX/.a temp/
742	cd temp
743	ar x libbibio.a
744	ar x libphymars.a
745	ar x libaeronomars.a
746	\rm *.a
747	ar r liblmd.a *
748	cp -f liblmd.a ..
749	cd ..
750	\rm -r temp
751	nm liblmd.a > liblmd_content
752	# finish merge
753	cd ..
754
755	if [[ "${phys}" == "newphys_" ]]
756	then
757	# include modules for interfacing
758	mv *.mod ../inc/
759	fi
760
761	# save a copy
762	#--------------
763	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}
764	echo '****************************************'
765
766	# ok
767	#----
768	cd ..
769
770	# manage nest includes in module_lmd_driver.F
771	#----
772	cp call_meso_inifis$dom.inc call_meso_inifis.inc
773	cp call_meso_physiq$dom.inc call_meso_physiq.inc
774
775
776	fi
777	##################################################
778	# END compile physics
779	##################################################
780
781	#------------------
782	# compile WRF
783	#------------------
784	if [ ${justphys} -eq 0 ]
785	then
786
787	echo 2. compiling WRF dynamical core ...
788
789	if [[ "${phys}" == "nophys_" ]]
790	then
791	echo 'NO LMD PHYSICS included'
792	else
793	if [[ ! ( -f "call_meso_physiq.inc" ) ]]
794	then
795	echo 'did you compile the physics ? no call_meso_physiq.inc !'
796	exit
797	fi
798	fi
799
800	# be sure to compile with the most recent physics
801	touch phys/module_lmd_driver.F
802
803	# talk to user
804	echo '>>> compiling ... this may be long ... <<<'
805	echo check progress in:
806	echo $PWD/log_compile
807	echo check possible errors in:
808	echo $PWD/log_error
809
810	# compile ...
811	case ${config} in
812	'') ./compile em_real > log_compile 2> log_error
813	# save executables
814	cd main
815	if [[ -f real.exe ]]
816	then
817	echo 'Looks good ! real.exe is here...'
818	fi
819	if [[ -f wrf.exe ]]
820	then
821	echo 'Looks good ! wrf.exe is here...'
822	fi
823	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
824	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
825	cd .. ;;
826	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
827	echo '>>> YOUR CONFIG IS : '${config}
828	./compile em_quarter_ss > log_compile 2> log_error
829	# save executables
830	cd main
831	if [[ -f ideal.exe ]]
832	then
833	echo 'Looks good ! ideal.exe is here...'
834	fi
835	if [[ -f wrf.exe ]]
836	then
837	echo 'Looks good ! wrf.exe is here...'
838	fi
839	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
840	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
841	cd .. ;;
842	'les') echo '>>> YOUR CONFIG IS : '${config}
843	mkdir 'test/em_les' 2> /dev/null
844	./compile em_les > log_compile 2> log_error
845	# save executables
846	cd main
847	if [[ -f ideal.exe ]]
848	then
849	echo 'Looks good ! ideal.exe is here...'
850	fi
851	if [[ -f wrf.exe ]]
852	then
853	echo 'Looks good ! wrf.exe is here...'
854	fi
855	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
856	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
857	cd .. ;;
858	*) echo not supported... please use ; echo ideal les ; exit ;;
859	esac
860	echo '*****last lines from log_error*******'
861	tail -n 20 log_error
862	fi
863
864	# the end
865	echo '****************************************'
866	echo 'done.'
867	echo '****************************************'
868	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}
869	mv last ../../
870	svn info ../../ > ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.svn.info
871
872
873
874	# link latest compiled folder as LATEST
875	cd ../../
876	rm -rf LATEST
877	ln -sf ${conf_wrf} LATEST
878
879	# add here specific messages
880	if [[ "${dom}" != "1" ]]
881	then
882	nest=$(expr ${lon} + 4)
883	echo NB: in namelist.input, please set:
884	echo '
885	max_dom = '$dom'
886	s_we = 1,1,
887	e_we = '$lon','$nest',
888	s_sn = 1,1,
889	e_sn = '$lat','$nest',
890	s_vert = 1,1,
891	e_vert = '$level','$level','
892	fi
893

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