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physiq_mod.F90 @ 1875

Last change on this file since 1875 was 1875, checked in by aslmd, 7 years ago
useless lines in physiq_mod in LMDZ.GENERIC
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Rev	Line
[1549]	1	module physiq_mod
	2
	3	implicit none
	4
	5	contains
	6
[751]	7	subroutine physiq(ngrid,nlayer,nq, &
[787]	8	nametrac, &
[253]	9	firstcall,lastcall, &
	10	pday,ptime,ptimestep, &
	11	pplev,pplay,pphi, &
	12	pu,pv,pt,pq, &
[1312]	13	flxw, &
[1576]	14	pdu,pdv,pdt,pdq,pdpsrf)
[253]	15
[726]	16	use radinc_h, only : L_NSPECTI,L_NSPECTV,naerkind
[1016]	17	use watercommon_h, only : RLVTT, Psat_water,epsi
[1216]	18	use gases_h, only: gnom, gfrac
[1482]	19	use radcommon_h, only: sigma, glat, grav, BWNV
[1308]	20	use radii_mod, only: h2o_reffrad, co2_reffrad
[1216]	21	use aerosol_mod, only: iaero_co2, iaero_h2o
[1482]	22	use surfdat_h, only: phisfi, zmea, zstd, zsig, zgam, zthe, &
[1216]	23	dryness, watercaptag
	24	use comdiurn_h, only: coslat, sinlat, coslon, sinlon
[1327]	25	use comsaison_h, only: mu0, fract, dist_star, declin, right_ascen
[1216]	26	use comsoil_h, only: nsoilmx, layer, mlayer, inertiedat
[1543]	27	use geometry_mod, only: latitude, longitude, cell_area
[1542]	28	USE comgeomfi_h, only: totarea, totarea_planet
[1216]	29	USE tracer_h, only: noms, mmol, radius, rho_q, qext, &
	30	alpha_lift, alpha_devil, qextrhor, &
	31	igcm_h2o_ice, igcm_h2o_vap, igcm_dustbin, &
	32	igcm_co2_ice
[1525]	33	use time_phylmdz_mod, only: ecritphy, iphysiq, nday
[1669]	34	use phyetat0_mod, only: phyetat0
[1216]	35	use phyredem, only: physdem0, physdem1
[1529]	36	use slab_ice_h, only: capcalocean, capcalseaice,capcalsno, &
	37	noceanmx
[1297]	38	use ocean_slab_mod, only :ocean_slab_init, ocean_slab_ice, &
[1529]	39	ini_surf_heat_transp_mod, &
[1297]	40	ocean_slab_get_vars,ocean_slab_final
	41	use surf_heat_transp_mod,only :init_masquv
[1295]	42	use planetwide_mod, only: planetwide_minval,planetwide_maxval,planetwide_sumval
	43	use mod_phys_lmdz_para, only : is_master
[1308]	44	use planete_mod, only: apoastr, periastr, year_day, peri_day, &
	45	obliquit, nres, z0
[1524]	46	use comcstfi_mod, only: pi, g, rcp, r, rad, mugaz, cpp
	47	use time_phylmdz_mod, only: daysec
[1397]	48	use callkeys_mod
[1801]	49	use conc_mod
[1836]	50	use phys_state_var_mod
	51	use turb_mod, only : q2,sensibFlux,turb_resolved
	52	#ifndef MESOSCALE
[1622]	53	use vertical_layers_mod, only: presnivs, pseudoalt
[1682]	54	use mod_phys_lmdz_omp_data, ONLY: is_omp_master
[1836]	55	#else
	56	use comm_wrf, only : comm_HR_SW, comm_HR_LW, &
	57	comm_CLOUDFRAC,comm_TOTCLOUDFRAC,&
	58	comm_RAIN,comm_SNOW,comm_ALBEQ,&
	59	comm_FLUXTOP_DN,comm_FLUXABS_SW,&
	60	comm_FLUXTOP_LW,comm_FLUXSURF_SW,&
	61	comm_FLUXSURF_LW,comm_FLXGRD,&
	62	comm_LSCEZ,comm_H2OICE_REFF
	63	#endif
	64
[1623]	65	#ifdef CPP_XIOS
[1622]	66	use xios_output_mod, only: initialize_xios_output, &
	67	update_xios_timestep, &
	68	send_xios_field
[1682]	69	use wxios, only: wxios_context_init, xios_context_finalize
[1623]	70	#endif
[1836]	71
[253]	72	implicit none
	73
	74
	75	!==================================================================
	76	!
	77	! Purpose
	78	! -------
	79	! Central subroutine for all the physics parameterisations in the
	80	! universal model. Originally adapted from the Mars LMDZ model.
	81	!
	82	! The model can be run without or with tracer transport
	83	! depending on the value of "tracer" in file "callphys.def".
	84	!
	85	!
	86	! It includes:
	87	!
[1477]	88	! I. Initialization :
	89	! I.1 Firstcall initializations.
	90	! I.2 Initialization for every call to physiq.
[253]	91	!
[1477]	92	! II. Compute radiative transfer tendencies (longwave and shortwave) :
	93	! II.a Option 1 : Call correlated-k radiative transfer scheme.
	94	! II.b Option 2 : Call Newtonian cooling scheme.
	95	! II.c Option 3 : Atmosphere has no radiative effect.
	96	!
	97	! III. Vertical diffusion (turbulent mixing) :
	98	!
	99	! IV. Dry Convective adjustment :
	100	!
	101	! V. Condensation and sublimation of gases (currently just CO2).
	102	!
	103	! VI. Tracers
	104	! VI.1. Water and water ice.
[1801]	105	! VI.2 Photochemistry
	106	! VI.3. Aerosols and particles.
	107	! VI.4. Updates (pressure variations, surface budget).
	108	! VI.5. Slab Ocean.
	109	! VI.6. Surface Tracer Update.
[1477]	110	!
	111	! VII. Surface and sub-surface soil temperature.
	112	!
	113	! VIII. Perform diagnostics and write output files.
	114	!
	115	!
[253]	116	! arguments
	117	! ---------
	118	!
[1477]	119	! INPUT
[253]	120	! -----
[1477]	121	!
[253]	122	! ngrid Size of the horizontal grid.
	123	! nlayer Number of vertical layers.
[1477]	124	! nq Number of advected fields.
	125	! nametrac Name of corresponding advected fields.
	126	!
	127	! firstcall True at the first call.
	128	! lastcall True at the last call.
	129	!
	130	! pday Number of days counted from the North. Spring equinoxe.
	131	! ptime Universal time (0<ptime<1): ptime=0.5 at 12:00 UT.
	132	! ptimestep timestep (s).
	133	!
	134	! pplay(ngrid,nlayer) Pressure at the middle of the layers (Pa).
	135	! pplev(ngrid,nlayer+1) Intermediate pressure levels (Pa).
	136	! pphi(ngrid,nlayer) Geopotential at the middle of the layers (m2.s-2).
	137	!
	138	! pu(ngrid,nlayer) u, zonal component of the wind (ms-1).
	139	! pv(ngrid,nlayer) v, meridional component of the wind (ms-1).
	140	!
	141	! pt(ngrid,nlayer) Temperature (K).
	142	!
	143	! pq(ngrid,nlayer,nq) Advected fields.
	144	!
[1216]	145	! pudyn(ngrid,nlayer) \
[253]	146	! pvdyn(ngrid,nlayer) \ Dynamical temporal derivative for the
[1477]	147	! ptdyn(ngrid,nlayer) / corresponding variables.
[253]	148	! pqdyn(ngrid,nlayer,nq) /
[1312]	149	! flxw(ngrid,nlayer) vertical mass flux (kg/s) at layer lower boundary
[253]	150	!
[1477]	151	! OUTPUT
[253]	152	! ------
	153	!
[1308]	154	! pdu(ngrid,nlayer) \
	155	! pdv(ngrid,nlayer) \ Temporal derivative of the corresponding
	156	! pdt(ngrid,nlayer) / variables due to physical processes.
	157	! pdq(ngrid,nlayer) /
[253]	158	! pdpsrf(ngrid) /
	159	!
	160	!
	161	! Authors
	162	! -------
[1524]	163	! Frederic Hourdin 15/10/93
	164	! Francois Forget 1994
	165	! Christophe Hourdin 02/1997
[253]	166	! Subroutine completely rewritten by F. Forget (01/2000)
	167	! Water ice clouds: Franck Montmessin (update 06/2003)
	168	! Radiatively active tracers: J.-B. Madeleine (10/2008-06/2009)
	169	! New correlated-k radiative scheme: R. Wordsworth (2009)
	170	! Many specifically Martian subroutines removed: R. Wordsworth (2009)
	171	! Improved water cycle: R. Wordsworth / B. Charnay (2010)
	172	! To F90: R. Wordsworth (2010)
[594]	173	! New turbulent diffusion scheme: J. Leconte (2012)
[716]	174	! Loops converted to F90 matrix format: J. Leconte (2012)
[787]	175	! No more ngridmx/nqmx, F90 commons and adaptation to parallel: A. Spiga (2012)
[1477]	176	! Purge of the code : M. Turbet (2015)
[1801]	177	! Photochemical core developped by F. Lefevre: B. Charnay (2017)
[253]	178	!==================================================================
	179
	180
	181	! 0. Declarations :
	182	! ------------------
	183
[1669]	184	include "netcdf.inc"
[253]	185
	186	! Arguments :
	187	! -----------
	188
[1477]	189	! INPUTS:
[253]	190	! -------
	191
[1477]	192	integer,intent(in) :: ngrid ! Number of atmospheric columns.
	193	integer,intent(in) :: nlayer ! Number of atmospheric layers.
	194	integer,intent(in) :: nq ! Number of tracers.
	195	character*20,intent(in) :: nametrac(nq) ! Names of the tracers taken from dynamics.
	196
	197	logical,intent(in) :: firstcall ! Signals first call to physics.
	198	logical,intent(in) :: lastcall ! Signals last call to physics.
	199
	200	real,intent(in) :: pday ! Number of elapsed sols since reference Ls=0.
	201	real,intent(in) :: ptime ! "Universal time", given as fraction of sol (e.g.: 0.5 for noon).
	202	real,intent(in) :: ptimestep ! Physics timestep (s).
	203	real,intent(in) :: pplev(ngrid,nlayer+1) ! Inter-layer pressure (Pa).
	204	real,intent(in) :: pplay(ngrid,nlayer) ! Mid-layer pressure (Pa).
	205	real,intent(in) :: pphi(ngrid,nlayer) ! Geopotential at mid-layer (m2s-2).
	206	real,intent(in) :: pu(ngrid,nlayer) ! Zonal wind component (m/s).
	207	real,intent(in) :: pv(ngrid,nlayer) ! Meridional wind component (m/s).
	208	real,intent(in) :: pt(ngrid,nlayer) ! Temperature (K).
	209	real,intent(in) :: pq(ngrid,nlayer,nq) ! Tracers (kg/kg_of_air).
	210	real,intent(in) :: flxw(ngrid,nlayer) ! Vertical mass flux (ks/s) at lower boundary of layer
[253]	211
[1477]	212	! OUTPUTS:
[253]	213	! --------
	214
[1477]	215	! Physical tendencies :
	216
	217	real,intent(out) :: pdu(ngrid,nlayer) ! Zonal wind tendencies (m/s/s).
	218	real,intent(out) :: pdv(ngrid,nlayer) ! Meridional wind tendencies (m/s/s).
	219	real,intent(out) :: pdt(ngrid,nlayer) ! Temperature tendencies (K/s).
	220	real,intent(out) :: pdq(ngrid,nlayer,nq) ! Tracer tendencies (kg/kg_of_air/s).
	221	real,intent(out) :: pdpsrf(ngrid) ! Surface pressure tendency (Pa/s).
	222
[253]	223	! Local saved variables:
	224	! ----------------------
[1622]	225	integer,save :: day_ini ! Initial date of the run (sol since Ls=0).
	226	integer,save :: icount ! Counter of calls to physiq during the run.
	227	!$OMP THREADPRIVATE(day_ini,icount)
	228
[253]	229	! Local variables :
	230	! -----------------
	231
[1477]	232	! Aerosol (dust or ice) extinction optical depth at reference wavelength
[253]	233	! for the "naerkind" optically active aerosols:
	234
[1477]	235	real aerosol(ngrid,nlayer,naerkind) ! Aerosols.
	236	real zh(ngrid,nlayer) ! Potential temperature (K).
	237	real pw(ngrid,nlayer) ! Vertical velocity (m/s). (NOTE : >0 WHEN DOWNWARDS !!)
	238
[1669]	239	integer l,ig,ierr,iq,nw,isoil
[1161]	240
[1477]	241	real zls ! Solar longitude (radians).
	242	real zlss ! Sub solar point longitude (radians).
	243	real zday ! Date (time since Ls=0, calculated in sols).
	244	real zzlay(ngrid,nlayer) ! Altitude at the middle of the atmospheric layers.
	245	real zzlev(ngrid,nlayer+1) ! Altitude at the atmospheric layer boundaries.
[253]	246
[1477]	247	! TENDENCIES due to various processes :
[253]	248
[1477]	249	! For Surface Temperature : (K/s)
	250	real zdtsurf(ngrid) ! Cumulated tendencies.
	251	real zdtsurfmr(ngrid) ! Mass_redistribution routine.
	252	real zdtsurfc(ngrid) ! Condense_co2 routine.
	253	real zdtsdif(ngrid) ! Turbdiff/vdifc routines.
	254	real zdtsurf_hyd(ngrid) ! Hydrol routine.
	255
	256	! For Atmospheric Temperatures : (K/s)
	257	real dtlscale(ngrid,nlayer) ! Largescale routine.
	258	real zdtc(ngrid,nlayer) ! Condense_co2 routine.
[1524]	259	real zdtdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
[1477]	260	real zdtmr(ngrid,nlayer) ! Mass_redistribution routine.
	261	real zdtrain(ngrid,nlayer) ! Rain routine.
	262	real dtmoist(ngrid,nlayer) ! Moistadj routine.
	263	real dt_ekman(ngrid,noceanmx), dt_hdiff(ngrid,noceanmx) ! Slab_ocean routine.
	264	real zdtsw1(ngrid,nlayer), zdtlw1(ngrid,nlayer) ! Callcorrk routine.
	265
	266	! For Surface Tracers : (kg/m2/s)
	267	real dqsurf(ngrid,nq) ! Cumulated tendencies.
[1484]	268	real zdqsurfc(ngrid) ! Condense_co2 routine.
[1477]	269	real zdqsdif(ngrid,nq) ! Turbdiff/vdifc routines.
	270	real zdqssed(ngrid,nq) ! Callsedim routine.
	271	real zdqsurfmr(ngrid,nq) ! Mass_redistribution routine.
	272	real zdqsrain(ngrid), zdqssnow(ngrid) ! Rain routine.
	273	real dqs_hyd(ngrid,nq) ! Hydrol routine.
[1859]	274	real reevap_precip(ngrid) ! re-evaporation flux of precipitation (integrated over the atmospheric column)
[1477]	275
	276	! For Tracers : (kg/kg_of_air/s)
	277	real zdqc(ngrid,nlayer,nq) ! Condense_co2 routine.
	278	real zdqadj(ngrid,nlayer,nq) ! Convadj routine.
	279	real zdqdif(ngrid,nlayer,nq) ! Turbdiff/vdifc routines.
	280	real zdqevap(ngrid,nlayer) ! Turbdiff routine.
	281	real zdqsed(ngrid,nlayer,nq) ! Callsedim routine.
	282	real zdqmr(ngrid,nlayer,nq) ! Mass_redistribution routine.
	283	real zdqrain(ngrid,nlayer,nq) ! Rain routine.
	284	real dqmoist(ngrid,nlayer,nq) ! Moistadj routine.
	285	real dqvaplscale(ngrid,nlayer) ! Largescale routine.
	286	real dqcldlscale(ngrid,nlayer) ! Largescale routine.
[1801]	287	REAL zdqchim(ngrid,nlayer,nq) ! Calchim_asis routine
	288	REAL zdqschim(ngrid,nq) ! Calchim_asis routine
	289
	290	REAL array_zero1(ngrid)
	291	REAL array_zero2(ngrid,nlayer)
[1477]	292
	293	! For Winds : (m/s/s)
	294	real zdvadj(ngrid,nlayer),zduadj(ngrid,nlayer) ! Convadj routine.
	295	real zdumr(ngrid,nlayer),zdvmr(ngrid,nlayer) ! Mass_redistribution routine.
	296	real zdvdif(ngrid,nlayer),zdudif(ngrid,nlayer) ! Turbdiff/vdifc routines.
	297	real zdhdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
	298	real zdhadj(ngrid,nlayer) ! Convadj routine.
	299
	300	! For Pressure and Mass :
	301	real zdmassmr(ngrid,nlayer) ! Atmospheric Mass tendency for mass_redistribution (kg_of_air/m2/s).
	302	real zdmassmr_col(ngrid) ! Atmospheric Column Mass tendency for mass_redistribution (kg_of_air/m2/s).
	303	real zdpsrfmr(ngrid) ! Pressure tendency for mass_redistribution routine (Pa/s).
[253]	304
[1477]	305
	306
	307	! Local variables for LOCAL CALCULATIONS:
	308	! ---------------------------------------
[787]	309	real zflubid(ngrid)
[1308]	310	real zplanck(ngrid),zpopsk(ngrid,nlayer)
[253]	311	real ztim1,ztim2,ztim3, z1,z2
	312	real ztime_fin
[1308]	313	real zdh(ngrid,nlayer)
[1194]	314	real gmplanet
[1297]	315	real taux(ngrid),tauy(ngrid)
[1194]	316
[253]	317
[1477]	318	! local variables for DIAGNOSTICS : (diagfi & stat)
	319	! -------------------------------------------------
	320	real ps(ngrid) ! Surface Pressure.
	321	real zt(ngrid,nlayer) ! Atmospheric Temperature.
	322	real zu(ngrid,nlayer),zv(ngrid,nlayer) ! Zonal and Meridional Winds.
	323	real zq(ngrid,nlayer,nq) ! Atmospheric Tracers.
	324	real zdtadj(ngrid,nlayer) ! Convadj Diagnostic.
	325	real zdtdyn(ngrid,nlayer) ! Dynamical Heating (K/s).
[1637]	326	real zdudyn(ngrid,nlayer) ! Dynamical Zonal Wind tendency (m.s-2).
[253]	327
[1477]	328	real reff(ngrid,nlayer) ! Effective dust radius (used if doubleq=T).
	329	real vmr(ngrid,nlayer) ! volume mixing ratio
[253]	330	real time_phys
[597]	331
[1477]	332	real ISR,ASR,OLR,GND,DYN,GSR,Ts1,Ts2,Ts3,TsS ! for Diagnostic.
	333
	334	real qcol(ngrid,nq) ! Tracer Column Mass (kg/m2).
[253]	335
	336	! included by RW for H2O Manabe scheme
[1477]	337	real rneb_man(ngrid,nlayer) ! H2O cloud fraction (moistadj).
	338	real rneb_lsc(ngrid,nlayer) ! H2O cloud fraction (large scale).
[253]	339
	340
[594]	341	! to test energy conservation (RW+JL)
[1308]	342	real mass(ngrid,nlayer),massarea(ngrid,nlayer)
[651]	343	real dEtot, dEtots, AtmToSurf_TurbFlux
[959]	344	real,save :: dEtotSW, dEtotsSW, dEtotLW, dEtotsLW
[1315]	345	!$OMP THREADPRIVATE(dEtotSW, dEtotsSW, dEtotLW, dEtotsLW)
[1308]	346	real dEzRadsw(ngrid,nlayer),dEzRadlw(ngrid,nlayer),dEzdiff(ngrid,nlayer)
[787]	347	real dEdiffs(ngrid),dEdiff(ngrid)
[1308]	348	real madjdE(ngrid), lscaledE(ngrid),madjdEz(ngrid,nlayer), lscaledEz(ngrid,nlayer)
[1477]	349
[594]	350	!JL12 conservation test for mean flow kinetic energy has been disabled temporarily
[1477]	351
	352	real dtmoist_max,dtmoist_min
[1295]	353	real dItot, dItot_tmp, dVtot, dVtot_tmp
[253]	354
	355
[1477]	356	real h2otot ! Total Amount of water. For diagnostic.
	357	real icesrf,liqsrf,icecol,vapcol ! Total Amounts of water (ice,liq,vap). For diagnostic.
[1295]	358	real dWtot, dWtot_tmp, dWtots, dWtots_tmp
[1477]	359	logical,save :: watertest
[1315]	360	!$OMP THREADPRIVATE(watertest)
[253]	361
[1477]	362	real qsat(ngrid,nlayer) ! Water Vapor Volume Mixing Ratio at saturation (kg/kg_of_air).
	363	real RH(ngrid,nlayer) ! Relative humidity.
	364	real H2Omaxcol(ngrid) ! Maximum possible H2O column amount (at 100% saturation) (kg/m2).
	365	real psat_tmp
	366
	367	logical clearsky ! For double radiative transfer call. By BC
	368
[1482]	369	! For Clear Sky Case.
	370	real fluxsurf_lw1(ngrid), fluxsurf_sw1(ngrid), fluxsurfabs_sw1(ngrid) ! For SW/LW flux.
	371	real fluxtop_lw1(ngrid), fluxabs_sw1(ngrid) ! For SW/LW flux.
	372	real albedo_equivalent1(ngrid) ! For Equivalent albedo calculation.
	373	real tau_col1(ngrid) ! For aerosol optical depth diagnostic.
	374	real OLR_nu1(ngrid,L_NSPECTI), OSR_nu1(ngrid,L_NSPECTV) ! For Outgoing Radiation diagnostics.
[253]	375	real tf, ntf
	376
[1477]	377	real nconsMAX, vdifcncons(ngrid), cadjncons(ngrid) ! Vdfic water conservation test. By RW
[253]	378
[1477]	379	real muvar(ngrid,nlayer+1) ! For Runaway Greenhouse 1D study. By RW
[253]	380
[787]	381	real reffcol(ngrid,naerkind)
[253]	382
[1477]	383	! Sourceevol for 'accelerated ice evolution'. By RW
[305]	384	real delta_ice,ice_tot
[253]	385	integer num_run
[728]	386	logical,save :: ice_update
[996]	387
[1297]	388
	389	real :: tsurf2(ngrid)
	390	real :: flux_o(ngrid),flux_g(ngrid),fluxgrdocean(ngrid)
	391	real :: flux_sens_lat(ngrid)
	392	real :: qsurfint(ngrid,nq)
	393
	394
[1477]	395	!==================================================================================================
[253]	396
	397	! -----------------
[1477]	398	! I. INITIALISATION
	399	! -----------------
[253]	400
[1477]	401	! --------------------------------
	402	! I.1 First Call Initialisation.
	403	! --------------------------------
[253]	404	if (firstcall) then
[1477]	405	! Allocate saved arrays.
[1842]	406	call phys_state_var_init(nq)
[858]	407
[1477]	408	! Variables set to 0
[253]	409	! ~~~~~~~~~~~~~~~~~~
	410	dtrad(:,:) = 0.0
	411	fluxrad(:) = 0.0
	412	tau_col(:) = 0.0
	413	zdtsw(:,:) = 0.0
	414	zdtlw(:,:) = 0.0
[726]	415
	416
[1477]	417	! Initialize aerosol indexes.
	418	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~
	419	call iniaerosol()
	420
[253]	421
[1477]	422	! Initialize tracer names, indexes and properties.
	423	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	424	IF (.NOT.ALLOCATED(noms)) ALLOCATE(noms(nq)) ! (because noms is an argument of physdem1 whether or not tracer is on)
[253]	425	if (tracer) then
[787]	426	call initracer(ngrid,nq,nametrac)
[1801]	427	if(photochem) then
	428	call ini_conc_mod(ngrid,nlayer)
	429	endif
[1477]	430	endif
[253]	431
[1682]	432	#ifdef CPP_XIOS
	433	! Initialize XIOS context
	434	write(,) "physiq: call wxios_context_init"
	435	CALL wxios_context_init
	436	#endif
[726]	437
[1477]	438	! Read 'startfi.nc' file.
[253]	439	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1836]	440	#ifndef MESOSCALE
[1669]	441	call phyetat0(startphy_file, &
	442	ngrid,nlayer,"startfi.nc",0,0,nsoilmx,nq, &
[1477]	443	day_ini,time_phys,tsurf,tsoil,emis,q2,qsurf, &
	444	cloudfrac,totcloudfrac,hice, &
	445	rnat,pctsrf_sic,tslab, tsea_ice,sea_ice)
[1836]	446	#else
	447	emis(:)=0.0
	448	q2(:,:)=0.0
	449	qsurf(:,:)=0.0
	450	day_ini = pday
	451	#endif
	452
	453	#ifndef MESOSCALE
[1669]	454	if (.not.startphy_file) then
	455	! additionnal "academic" initialization of physics
	456	if (is_master) write(,) "Physiq: initializing tsurf(:) to pt(:,1) !!"
	457	tsurf(:)=pt(:,1)
	458	if (is_master) write(,) "Physiq: initializing tsoil(:) to pt(:,1) !!"
	459	do isoil=1,nsoilmx
	460	tsoil(1:ngrid,isoil)=tsurf(1:ngrid)
	461	enddo
	462	if (is_master) write(,) "Physiq: initializing day_ini to pdat !"
	463	day_ini=pday
	464	endif
[1836]	465	#endif
[253]	466
	467	if (pday.ne.day_ini) then
	468	write(,) "ERROR in physiq.F90:"
	469	write(,) "bad synchronization between physics and dynamics"
	470	write(,) "dynamics day: ",pday
	471	write(,) "physics day: ",day_ini
	472	stop
	473	endif
	474
	475	write (,) 'In physiq day_ini =', day_ini
	476
[1482]	477	! Initialize albedo calculation.
	478	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	479	albedo(:,:)=0.0
[1524]	480	albedo_bareground(:)=0.0
	481	albedo_snow_SPECTV(:)=0.0
	482	albedo_co2_ice_SPECTV(:)=0.0
[1482]	483	call surfini(ngrid,nq,qsurf,albedo,albedo_bareground,albedo_snow_SPECTV,albedo_co2_ice_SPECTV)
	484
	485	! Initialize orbital calculation.
	486	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[253]	487	call iniorbit(apoastr,periastr,year_day,peri_day,obliquit)
	488
	489
	490	if(tlocked)then
	491	print*,'Planet is tidally locked at resonance n=',nres
	492	print*,'Make sure you have the right rotation rate!!!'
	493	endif
	494
[1477]	495	! Initialize oceanic variables.
	496	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1297]	497
	498	if (ok_slab_ocean)then
	499
	500	call ocean_slab_init(ngrid,ptimestep, tslab, &
[1477]	501	sea_ice, pctsrf_sic)
[1297]	502
[1529]	503	call ini_surf_heat_transp_mod()
	504
[1477]	505	knindex(:) = 0
[1297]	506
[1477]	507	do ig=1,ngrid
[1297]	508	zmasq(ig)=1
	509	knindex(ig) = ig
	510	if (nint(rnat(ig)).eq.0) then
	511	zmasq(ig)=0
	512	endif
[1477]	513	enddo
[1297]	514
[1308]	515	CALL init_masquv(ngrid,zmasq)
[1297]	516
[1477]	517	endif ! end of 'ok_slab_ocean'.
[1297]	518
	519
[1477]	520	! Initialize soil.
	521	! ~~~~~~~~~~~~~~~~
[253]	522	if (callsoil) then
[1477]	523
[787]	524	call soil(ngrid,nsoilmx,firstcall,lastcall,inertiedat, &
[1477]	525	ptimestep,tsurf,tsoil,capcal,fluxgrd)
[1297]	526
	527	if (ok_slab_ocean) then
	528	do ig=1,ngrid
	529	if (nint(rnat(ig)).eq.2) then
[1477]	530	capcal(ig)=capcalocean
	531	if (pctsrf_sic(ig).gt.0.5) then
	532	capcal(ig)=capcalseaice
	533	if (qsurf(ig,igcm_h2o_ice).gt.0.) then
	534	capcal(ig)=capcalsno
	535	endif
	536	endif
[1297]	537	endif
	538	enddo
[1477]	539	endif ! end of 'ok_slab_ocean'.
[1297]	540
[1477]	541	else ! else of 'callsoil'.
	542
[253]	543	print*,'WARNING! Thermal conduction in the soil turned off'
[918]	544	capcal(:)=1.e6
[952]	545	fluxgrd(:)=intheat
	546	print*,'Flux from ground = ',intheat,' W m^-2'
[1477]	547
	548	endif ! end of 'callsoil'.
	549
[253]	550	icount=1
	551
[1477]	552	! Decide whether to update ice at end of run.
	553	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[253]	554	ice_update=.false.
	555	if(sourceevol)then
[1315]	556	!$OMP MASTER
[955]	557	open(128,file='num_run',form='formatted', &
	558	status="old",iostat=ierr)
	559	if (ierr.ne.0) then
[1477]	560	write(,) "physiq: Error! No num_run file!"
	561	write(,) " (which is needed for sourceevol option)"
	562	stop
[955]	563	endif
[253]	564	read(128,*) num_run
	565	close(128)
[1315]	566	!$OMP END MASTER
	567	!$OMP BARRIER
[253]	568
[365]	569	if(num_run.ne.0.and.mod(num_run,2).eq.0)then
[253]	570	print*,'Updating ice at end of this year!'
	571	ice_update=.true.
	572	ice_min(:)=1.e4
[1477]	573	endif
	574
	575	endif ! end of 'sourceevol'.
[253]	576
[1477]	577
	578	! Here is defined the type of the surface : Continent or Ocean.
	579	! BC2014 : This is now already done in newstart.
	580	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1297]	581	if (.not.ok_slab_ocean) then
[1477]	582
[1297]	583	rnat(:)=1.
	584	do ig=1,ngrid
[1477]	585	if(inertiedat(ig,1).gt.1.E4)then
	586	rnat(ig)=0
	587	endif
[1297]	588	enddo
[253]	589
[1297]	590	print*,'WARNING! Surface type currently decided by surface inertia'
	591	print*,'This should be improved e.g. in newstart.F'
[1477]	592
	593	endif ! end of 'ok_slab_ocean'.
[253]	594
[1477]	595
	596	! Initialize surface history variable.
[253]	597	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[728]	598	qsurf_hist(:,:)=qsurf(:,:)
[253]	599
[1637]	600	! Initialize variable for dynamical heating and zonal wind tendency diagnostic
	601	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[253]	602	ztprevious(:,:)=pt(:,:)
[1637]	603	zuprevious(:,:)=pu(:,:)
[253]	604
	605	! Set temperature just above condensation temperature (for Early Mars)
	606	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	607	if(nearco2cond) then
	608	write(,)' WARNING! Starting at Tcond+1K'
	609	do l=1, nlayer
	610	do ig=1,ngrid
	611	pdt(ig,l)= ((-3167.8)/(log(.01*pplay(ig,l))-23.23)+4 &
	612	-pt(ig,l)) / ptimestep
	613	enddo
	614	enddo
	615	endif
	616
[1477]	617	if(meanOLR)then
	618	call system('rm -f rad_bal.out') ! to record global radiative balance.
	619	call system('rm -f tem_bal.out') ! to record global mean/max/min temperatures.
	620	call system('rm -f h2o_bal.out') ! to record global hydrological balance.
[253]	621	endif
	622
	623
[1477]	624	watertest=.false.
	625	if(water)then ! Initialize variables for water cycle
	626
[365]	627	if(enertest)then
	628	watertest = .true.
	629	endif
	630
[728]	631	if(ice_update)then
	632	ice_initial(:)=qsurf(:,igcm_h2o_ice)
	633	endif
[253]	634
	635	endif
[1477]	636
[253]	637	call su_watercycle ! even if we don't have a water cycle, we might
	638	! need epsi for the wvp definitions in callcorrk.F
[1836]	639	#ifndef MESOSCALE
[1477]	640	if (ngrid.ne.1) then ! Note : no need to create a restart file in 1d.
[1542]	641	call physdem0("restartfi.nc",longitude,latitude,nsoilmx,ngrid,nlayer,nq, &
	642	ptimestep,pday+nday,time_phys,cell_area, &
[1482]	643	albedo_bareground,inertiedat,zmea,zstd,zsig,zgam,zthe)
[1216]	644	endif
[1836]	645	#endif
[1216]	646
[1622]	647	! XIOS outputs
	648	#ifdef CPP_XIOS
	649
	650	write(,) "physiq: call initialize_xios_output"
	651	call initialize_xios_output(pday,ptime,ptimestep,daysec, &
	652	presnivs,pseudoalt)
	653	#endif
[1682]	654	write(,) "physiq: end of firstcall"
[1477]	655	endif ! end of 'firstcall'
[253]	656
[1477]	657	! ------------------------------------------------------
	658	! I.2 Initializations done at every physical timestep:
	659	! ------------------------------------------------------
	660
[1622]	661	#ifdef CPP_XIOS
	662	! update XIOS time/calendar
	663	call update_xios_timestep
	664	#endif
	665
[1477]	666	! Initialize various variables
	667	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1297]	668
[253]	669	if ( .not.nearco2cond ) then
[1308]	670	pdt(1:ngrid,1:nlayer) = 0.0
[1477]	671	endif
	672	zdtsurf(1:ngrid) = 0.0
[1308]	673	pdq(1:ngrid,1:nlayer,1:nq) = 0.0
[1477]	674	dqsurf(1:ngrid,1:nq)= 0.0
	675	pdu(1:ngrid,1:nlayer) = 0.0
	676	pdv(1:ngrid,1:nlayer) = 0.0
[787]	677	pdpsrf(1:ngrid) = 0.0
[1477]	678	zflubid(1:ngrid) = 0.0
[1297]	679	flux_sens_lat(1:ngrid) = 0.0
	680	taux(1:ngrid) = 0.0
	681	tauy(1:ngrid) = 0.0
[253]	682
[1477]	683	zday=pday+ptime ! Compute time, in sols (and fraction thereof).
[1297]	684
[1477]	685	! Compute Stellar Longitude (Ls), and orbital parameters.
	686	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[253]	687	if (season) then
	688	call stellarlong(zday,zls)
	689	else
	690	call stellarlong(float(day_ini),zls)
	691	end if
	692
[1329]	693	call orbite(zls,dist_star,declin,right_ascen)
[1477]	694
[1329]	695	if (tlocked) then
	696	zlss=Mod(-(2.pi(zday/year_day)nres - right_ascen),2.pi)
	697	elseif (diurnal) then
[1524]	698	zlss=-2.pi(zday-.5)
[1329]	699	else if(diurnal .eqv. .false.) then
	700	zlss=9999.
	701	endif
[1194]	702
	703
[1477]	704	! Compute variations of g with latitude (oblate case).
	705	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	706	if (oblate .eqv. .false.) then
	707	glat(:) = g
	708	else if (flatten .eq. 0.0 .or. J2 .eq. 0.0 .or. Rmean .eq. 0.0 .or. MassPlanet .eq. 0.0) then
	709	print*,'I need values for flatten, J2, Rmean and MassPlanet to compute glat (else set oblate=.false.)'
	710	call abort
	711	else
	712	gmplanet = MassPlanetgrav1e24
	713	do ig=1,ngrid
[1542]	714	glat(ig)= gmplanet/(Rmean*2) (1.D0 + 0.75 J2 - 2.0flatten/3. + (2.flatten - 15./4. J2) * cos(2. * (pi/2. - latitude(ig))))
[1477]	715	end do
	716	endif
[1297]	717
[1477]	718	! Compute geopotential between layers.
	719	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1308]	720	zzlay(1:ngrid,1:nlayer)=pphi(1:ngrid,1:nlayer)
	721	do l=1,nlayer
[1477]	722	zzlay(1:ngrid,l)= zzlay(1:ngrid,l)/glat(1:ngrid)
[1194]	723	enddo
[728]	724
[787]	725	zzlev(1:ngrid,1)=0.
[1477]	726	zzlev(1:ngrid,nlayer+1)=1.e7 ! Dummy top of last layer above 10000 km...
[728]	727
[253]	728	do l=2,nlayer
	729	do ig=1,ngrid
	730	z1=(pplay(ig,l-1)+pplev(ig,l))/(pplay(ig,l-1)-pplev(ig,l))
	731	z2=(pplev(ig,l)+pplay(ig,l))/(pplev(ig,l)-pplay(ig,l))
	732	zzlev(ig,l)=(z1zzlay(ig,l-1)+z2zzlay(ig,l))/(z1+z2)
	733	enddo
[1477]	734	enddo
[253]	735
[1477]	736	! Compute potential temperature
	737	! Note : Potential temperature calculation may not be the same in physiq and dynamic...
	738	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[597]	739	do l=1,nlayer
[787]	740	do ig=1,ngrid
[253]	741	zpopsk(ig,l)=(pplay(ig,l)/pplev(ig,1))**rcp
[597]	742	zh(ig,l)=pt(ig,l)/zpopsk(ig,l)
[1194]	743	mass(ig,l) = (pplev(ig,l) - pplev(ig,l+1))/glat(ig)
[1542]	744	massarea(ig,l)=mass(ig,l)*cell_area(ig)
[253]	745	enddo
	746	enddo
	747
[1312]	748	! Compute vertical velocity (m/s) from vertical mass flux
[1346]	749	! w = F / (rhoarea) and rho = P/(rT)
[1477]	750	! But first linearly interpolate mass flux to mid-layers
	751	do l=1,nlayer-1
	752	pw(1:ngrid,l)=0.5*(flxw(1:ngrid,l)+flxw(1:ngrid,l+1))
	753	enddo
	754	pw(1:ngrid,nlayer)=0.5*flxw(1:ngrid,nlayer) ! since flxw(nlayer+1)=0
	755	do l=1,nlayer
	756	pw(1:ngrid,l)=(pw(1:ngrid,l)rpt(1:ngrid,l)) / &
[1542]	757	(pplay(1:ngrid,l)*cell_area(1:ngrid))
[1477]	758	enddo
[1194]	759
[1801]	760	! ----------------------------------------------------------------
	761	! Compute mean mass, cp, and R
	762	! --------------------------------
	763
	764	if(photochem) then
	765	call concentrations(ngrid,nlayer,nq,pplay,pt,pdt,pq,pdq,ptimestep)
	766	endif
	767
[1477]	768	!---------------------------------
	769	! II. Compute radiative tendencies
	770	!---------------------------------
[253]	771
	772	if (callrad) then
[526]	773	if( mod(icount-1,iradia).eq.0.or.lastcall) then
[253]	774
[1477]	775	! Compute local stellar zenith angles
	776	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	777	if (tlocked) then
	778	! JL14 corrects tidally resonant (and inclined) cases. nres=omega_rot/omega_orb
	779	ztim1=SIN(declin)
	780	ztim2=COS(declin)*COS(zlss)
	781	ztim3=COS(declin)*SIN(zlss)
[253]	782
[1477]	783	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
	784	ztim1,ztim2,ztim3,mu0,fract, flatten)
[253]	785
[1477]	786	elseif (diurnal) then
	787	ztim1=SIN(declin)
	788	ztim2=COS(declin)COS(2.pi*(zday-.5))
	789	ztim3=-COS(declin)SIN(2.pi*(zday-.5))
[253]	790
[1477]	791	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
	792	ztim1,ztim2,ztim3,mu0,fract, flatten)
	793	else if(diurnal .eqv. .false.) then
[253]	794
[1542]	795	call mucorr(ngrid,declin,latitude,mu0,fract,10000.,rad,flatten)
[1161]	796	! WARNING: this function appears not to work in 1D
[253]	797
[1477]	798	endif
[1161]	799
[1477]	800	! Eclipse incoming sunlight (e.g. Saturn ring shadowing).
[1429]	801	if(rings_shadow) then
	802	call call_rings(ngrid, ptime, pday, diurnal)
	803	endif
[1133]	804
[1329]	805
[1477]	806	if (corrk) then
	807
	808	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	809	! II.a Call correlated-k radiative transfer scheme
	810	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	811	if(kastprof)then
	812	print*,'kastprof should not = true here'
	813	call abort
	814	endif
[1524]	815	if(water) then
[1308]	816	muvar(1:ngrid,1:nlayer)=mugaz/(1.e0+(1.e0/epsi-1.e0)*pq(1:ngrid,1:nlayer,igcm_h2o_vap))
[1524]	817	muvar(1:ngrid,nlayer+1)=mugaz/(1.e0+(1.e0/epsi-1.e0)*pq(1:ngrid,nlayer,igcm_h2o_vap))
	818	! take into account water effect on mean molecular weight
	819	else
[1308]	820	muvar(1:ngrid,1:nlayer+1)=mugaz
[1524]	821	endif
[538]	822
[1297]	823
[1477]	824	if(ok_slab_ocean) then
	825	tsurf2(:)=tsurf(:)
	826	do ig=1,ngrid
	827	if (nint(rnat(ig))==0) then
	828	tsurf(ig)=((1.-pctsrf_sic(ig))tslab(ig,1)4+pctsrf_sic(ig)tsea_ice(ig)4)0.25
	829	endif
	830	enddo
	831	endif !(ok_slab_ocean)
[1297]	832
[1477]	833	! standard callcorrk
	834	clearsky=.false.
[1482]	835	call callcorrk(ngrid,nlayer,pq,nq,qsurf, &
	836	albedo,albedo_equivalent,emis,mu0,pplev,pplay,pt, &
	837	tsurf,fract,dist_star,aerosol,muvar, &
	838	zdtlw,zdtsw,fluxsurf_lw,fluxsurf_sw, &
	839	fluxsurfabs_sw,fluxtop_lw, &
	840	fluxabs_sw,fluxtop_dn,OLR_nu,OSR_nu, &
	841	tau_col,cloudfrac,totcloudfrac, &
	842	clearsky,firstcall,lastcall)
[1297]	843
[1482]	844	! Option to call scheme once more for clear regions
[1477]	845	if(CLFvarying)then
[253]	846
[1477]	847	! ---> PROBLEMS WITH ALLOCATED ARRAYS : temporary solution in callcorrk: do not deallocate if CLFvarying ...
	848	clearsky=.true.
[1482]	849	call callcorrk(ngrid,nlayer,pq,nq,qsurf, &
	850	albedo,albedo_equivalent1,emis,mu0,pplev,pplay,pt, &
	851	tsurf,fract,dist_star,aerosol,muvar, &
	852	zdtlw1,zdtsw1,fluxsurf_lw1,fluxsurf_sw1, &
	853	fluxsurfabs_sw1,fluxtop_lw1, &
	854	fluxabs_sw1,fluxtop_dn,OLR_nu1,OSR_nu1, &
	855	tau_col1,cloudfrac,totcloudfrac, &
[1477]	856	clearsky,firstcall,lastcall)
	857	clearsky = .false. ! just in case.
[253]	858
[1477]	859	! Sum the fluxes and heating rates from cloudy/clear cases
	860	do ig=1,ngrid
	861	tf=totcloudfrac(ig)
[1482]	862	ntf=1.-tf
	863	fluxsurf_lw(ig) = ntffluxsurf_lw1(ig) + tffluxsurf_lw(ig)
	864	fluxsurf_sw(ig) = ntffluxsurf_sw1(ig) + tffluxsurf_sw(ig)
	865	albedo_equivalent(ig) = ntfalbedo_equivalent1(ig) + tfalbedo_equivalent(ig)
	866	fluxsurfabs_sw(ig) = ntffluxsurfabs_sw1(ig) + tffluxsurfabs_sw(ig)
	867	fluxtop_lw(ig) = ntffluxtop_lw1(ig) + tffluxtop_lw(ig)
	868	fluxabs_sw(ig) = ntffluxabs_sw1(ig) + tffluxabs_sw(ig)
	869	tau_col(ig) = ntftau_col1(ig) + tftau_col(ig)
[253]	870
[1477]	871	zdtlw(ig,1:nlayer) = ntfzdtlw1(ig,1:nlayer) + tfzdtlw(ig,1:nlayer)
	872	zdtsw(ig,1:nlayer) = ntfzdtsw1(ig,1:nlayer) + tfzdtsw(ig,1:nlayer)
[253]	873
[1524]	874	OSR_nu(ig,1:L_NSPECTV) = ntfOSR_nu1(ig,1:L_NSPECTV) + tfOSR_nu(ig,1:L_NSPECTV)
	875	OLR_nu(ig,1:L_NSPECTI) = ntfOLR_nu1(ig,1:L_NSPECTI) + tfOLR_nu(ig,1:L_NSPECTI)
[1482]	876	enddo
[253]	877
[1477]	878	endif ! end of CLFvarying.
[253]	879
[1477]	880	if(ok_slab_ocean) then
	881	tsurf(:)=tsurf2(:)
	882	endif
[1297]	883
	884
[1482]	885	! Radiative flux from the sky absorbed by the surface (W.m-2).
[1477]	886	GSR=0.0
[1482]	887	fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)+fluxsurfabs_sw(1:ngrid)
[253]	888
[1477]	889	!if(noradsurf)then ! no lower surface; SW flux just disappears
[1542]	890	! GSR = SUM(fluxsurf_sw(1:ngrid)*cell_area(1:ngrid))/totarea
[1477]	891	! fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)
	892	! print*,'SW lost in deep atmosphere = ',GSR,' W m^-2'
	893	!endif
[253]	894
[1477]	895	! Net atmospheric radiative heating rate (K.s-1)
	896	dtrad(1:ngrid,1:nlayer)=zdtsw(1:ngrid,1:nlayer)+zdtlw(1:ngrid,1:nlayer)
[1498]	897
	898	! Late initialization of the Ice Spectral Albedo. We needed the visible bands to do that !
	899	if (firstcall .and. albedo_spectral_mode) then
	900	call spectral_albedo_calc(albedo_snow_SPECTV)
	901	endif
[253]	902
[1477]	903	elseif(newtonian)then
[1482]	904
	905	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	906	! II.b Call Newtonian cooling scheme
	907	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1477]	908	call newtrelax(ngrid,nlayer,mu0,sinlat,zpopsk,pt,pplay,pplev,dtrad,firstcall)
[253]	909
[1477]	910	zdtsurf(1:ngrid) = +(pt(1:ngrid,1)-tsurf(1:ngrid))/ptimestep
	911	! e.g. surface becomes proxy for 1st atmospheric layer ?
[253]	912
[1477]	913	else
	914
	915	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	916	! II.c Atmosphere has no radiative effect
	917	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	918	fluxtop_dn(1:ngrid) = fract(1:ngrid)mu0(1:ngrid)Fat1AU/dist_star**2
	919	if(ngrid.eq.1)then ! / by 4 globally in 1D case...
	920	fluxtop_dn(1) = fract(1)Fat1AU/dist_star*2/2.0
	921	endif
	922	fluxsurf_sw(1:ngrid) = fluxtop_dn(1:ngrid)
[1482]	923	print*,'------------WARNING---WARNING------------' ! by MT2015.
	924	print*,'You are in corrk=false mode, '
[1498]	925	print*,'and the surface albedo is taken equal to the first visible spectral value'
	926
	927	fluxsurfabs_sw(1:ngrid) = fluxtop_dn(1:ngrid)*(1.-albedo(1:ngrid,1))
	928	fluxrad_sky(1:ngrid) = fluxsurfabs_sw(1:ngrid)
[1477]	929	fluxtop_lw(1:ngrid) = emis(1:ngrid)sigmatsurf(1:ngrid)**4
[253]	930
[1477]	931	dtrad(1:ngrid,1:nlayer)=0.0 ! no atmospheric radiative heating
[253]	932
[1477]	933	endif ! end of corrk
[253]	934
[1477]	935	endif ! of if(mod(icount-1,iradia).eq.0)
[787]	936
[253]	937
[1477]	938	! Transformation of the radiative tendencies
	939	! ------------------------------------------
	940	zplanck(1:ngrid)=tsurf(1:ngrid)*tsurf(1:ngrid)
	941	zplanck(1:ngrid)=emis(1:ngrid)sigmazplanck(1:ngrid)*zplanck(1:ngrid)
	942	fluxrad(1:ngrid)=fluxrad_sky(1:ngrid)-zplanck(1:ngrid)
	943	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+dtrad(1:ngrid,1:nlayer)
	944
	945	! Test of energy conservation
	946	!----------------------------
[253]	947	if(enertest)then
[1524]	948	call planetwide_sumval(cppmassarea(:,:)zdtsw(:,:)/totarea_planet,dEtotSW)
	949	call planetwide_sumval(cppmassarea(:,:)zdtlw(:,:)/totarea_planet,dEtotLW)
[1542]	950	!call planetwide_sumval(fluxsurf_sw(:)(1.-albedo_equivalent(:))cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
	951	call planetwide_sumval(fluxsurfabs_sw(:)*cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
	952	call planetwide_sumval((fluxsurf_lw(:)emis(:)-zplanck(:))cell_area(:)/totarea_planet,dEtotsLW)
[1524]	953	dEzRadsw(:,:)=cppmass(:,:)zdtsw(:,:)
	954	dEzRadlw(:,:)=cppmass(:,:)zdtlw(:,:)
	955	if (is_master) then
[1477]	956	print*,'---------------------------------------------------------------'
	957	print*,'In corrk SW atmospheric heating =',dEtotSW,' W m-2'
	958	print*,'In corrk LW atmospheric heating =',dEtotLW,' W m-2'
	959	print*,'atmospheric net rad heating (SW+LW) =',dEtotLW+dEtotSW,' W m-2'
	960	print*,'In corrk SW surface heating =',dEtotsSW,' W m-2'
	961	print*,'In corrk LW surface heating =',dEtotsLW,' W m-2'
	962	print*,'surface net rad heating (SW+LW) =',dEtotsLW+dEtotsSW,' W m-2'
[1524]	963	endif
[1477]	964	endif ! end of 'enertest'
[253]	965
	966	endif ! of if (callrad)
	967
	968
[1477]	969
	970	! --------------------------------------------
	971	! III. Vertical diffusion (turbulent mixing) :
	972	! --------------------------------------------
	973
[253]	974	if (calldifv) then
[526]	975
[787]	976	zflubid(1:ngrid)=fluxrad(1:ngrid)+fluxgrd(1:ngrid)
[253]	977
[1477]	978	! JL12 the following if test is temporarily there to allow us to compare the old vdifc with turbdiff.
[1524]	979	if (UseTurbDiff) then
	980
[1477]	981	call turbdiff(ngrid,nlayer,nq,rnat, &
	982	ptimestep,capcal,lwrite, &
	983	pplay,pplev,zzlay,zzlev,z0, &
	984	pu,pv,pt,zpopsk,pq,tsurf,emis,qsurf, &
	985	pdt,pdq,zflubid, &
	986	zdudif,zdvdif,zdtdif,zdtsdif, &
[1524]	987	sensibFlux,q2,zdqdif,zdqevap,zdqsdif, &
[1477]	988	taux,tauy,lastcall)
[594]	989
[1524]	990	else
	991
[1477]	992	zdh(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
[594]	993
[1477]	994	call vdifc(ngrid,nlayer,nq,rnat,zpopsk, &
	995	ptimestep,capcal,lwrite, &
	996	pplay,pplev,zzlay,zzlev,z0, &
	997	pu,pv,zh,pq,tsurf,emis,qsurf, &
	998	zdh,pdq,zflubid, &
	999	zdudif,zdvdif,zdhdif,zdtsdif, &
[1524]	1000	sensibFlux,q2,zdqdif,zdqsdif, &
[1477]	1001	taux,tauy,lastcall)
[253]	1002
[1477]	1003	zdtdif(1:ngrid,1:nlayer)=zdhdif(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
[1524]	1004	zdqevap(1:ngrid,1:nlayer)=0.
[594]	1005
[1477]	1006	end if !end of 'UseTurbDiff'
[594]	1007
[1836]	1008	!!! this is always done, except for turbulence-resolving simulations
	1009	if (.not. turb_resolved) then
	1010	pdv(1:ngrid,1:nlayer)=pdv(1:ngrid,1:nlayer)+zdvdif(1:ngrid,1:nlayer)
	1011	pdu(1:ngrid,1:nlayer)=pdu(1:ngrid,1:nlayer)+zdudif(1:ngrid,1:nlayer)
	1012	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+zdtdif(1:ngrid,1:nlayer)
	1013	zdtsurf(1:ngrid)=zdtsurf(1:ngrid)+zdtsdif(1:ngrid)
	1014	endif
[1477]	1015
[1297]	1016	if(ok_slab_ocean)then
	1017	flux_sens_lat(1:ngrid)=(zdtsdif(1:ngrid)*capcal(1:ngrid)-fluxrad(1:ngrid))
	1018	endif
	1019
	1020
[253]	1021	if (tracer) then
[1308]	1022	pdq(1:ngrid,1:nlayer,1:nq)=pdq(1:ngrid,1:nlayer,1:nq)+ zdqdif(1:ngrid,1:nlayer,1:nq)
[787]	1023	dqsurf(1:ngrid,1:nq)=dqsurf(1:ngrid,1:nq) + zdqsdif(1:ngrid,1:nq)
[253]	1024	end if ! of if (tracer)
	1025
[1477]	1026
	1027	! test energy conservation
[253]	1028	!-------------------------
	1029	if(enertest)then
[1477]	1030
[1524]	1031	dEzdiff(:,:)=cppmass(:,:)zdtdif(:,:)
[253]	1032	do ig = 1, ngrid
[1524]	1033	dEdiff(ig)=SUM(dEzdiff (ig,:))+ sensibFlux(ig)! subtract flux to the ground
	1034	dEzdiff(ig,1)= dEzdiff(ig,1)+ sensibFlux(ig)! subtract flux to the ground
[253]	1035	enddo
[1477]	1036
[1542]	1037	call planetwide_sumval(dEdiff(:)*cell_area(:)/totarea_planet,dEtot)
[1524]	1038	dEdiffs(:)=capcal(:)*zdtsdif(:)-zflubid(:)-sensibFlux(:)
[1542]	1039	call planetwide_sumval(dEdiffs(:)*cell_area(:)/totarea_planet,dEtots)
	1040	call planetwide_sumval(sensibFlux(:)*cell_area(:)/totarea_planet,AtmToSurf_TurbFlux)
[1477]	1041
[1524]	1042	if (is_master) then
[1477]	1043
	1044	if (UseTurbDiff) then
[1524]	1045	print*,'In TurbDiff sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
	1046	print*,'In TurbDiff non-cons atm nrj change =',dEtot,' W m-2'
[1477]	1047	print*,'In TurbDiff (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
[1524]	1048	else
	1049	print*,'In vdifc sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
	1050	print*,'In vdifc non-cons atm nrj change =',dEtot,' W m-2'
	1051	print*,'In vdifc (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
	1052	end if
	1053	endif ! end of 'is_master'
[1477]	1054
	1055	! JL12 : note that the black body radiative flux emitted by the surface has been updated by the implicit scheme but not given back elsewhere.
	1056	endif ! end of 'enertest'
[253]	1057
[1477]	1058
	1059	! Test water conservation.
[253]	1060	if(watertest.and.water)then
[1477]	1061
[1524]	1062	call planetwide_sumval(massarea(:,:)zdqdif(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dWtot_tmp)
[1542]	1063	call planetwide_sumval(zdqsdif(:,igcm_h2o_vap)cell_area(:)ptimestep/totarea_planet,dWtots_tmp)
[253]	1064	do ig = 1, ngrid
[1524]	1065	vdifcncons(ig)=SUM(mass(ig,:)*zdqdif(ig,:,igcm_h2o_vap))
	1066	enddo
	1067	call planetwide_sumval(massarea(:,:)zdqdif(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
[1542]	1068	call planetwide_sumval(zdqsdif(:,igcm_h2o_ice)cell_area(:)ptimestep/totarea_planet,dWtots)
[1524]	1069	dWtot = dWtot + dWtot_tmp
	1070	dWtots = dWtots + dWtots_tmp
[651]	1071	do ig = 1, ngrid
[1524]	1072	vdifcncons(ig)=vdifcncons(ig) + SUM(mass(ig,:)*zdqdif(ig,:,igcm_h2o_ice))
	1073	enddo
	1074	call planetwide_maxval(vdifcncons(:),nconsMAX)
[253]	1075
[1524]	1076	if (is_master) then
[1477]	1077	print*,'---------------------------------------------------------------'
	1078	print*,'In difv atmospheric water change =',dWtot,' kg m-2'
	1079	print*,'In difv surface water change =',dWtots,' kg m-2'
	1080	print*,'In difv non-cons factor =',dWtot+dWtots,' kg m-2'
	1081	print*,'In difv MAX non-cons factor =',nconsMAX,' kg m-2 s-1'
[1524]	1082	endif
[253]	1083
[1477]	1084	endif ! end of 'watertest'
[253]	1085	!-------------------------
	1086
[1477]	1087	else ! calldifv
[253]	1088
	1089	if(.not.newtonian)then
	1090
[787]	1091	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + (fluxrad(1:ngrid) + fluxgrd(1:ngrid))/capcal(1:ngrid)
[253]	1092
	1093	endif
	1094
[1477]	1095	endif ! end of 'calldifv'
[253]	1096
	1097
[1477]	1098	!----------------------------------
	1099	! IV. Dry convective adjustment :
	1100	!----------------------------------
[253]	1101
	1102	if(calladj) then
	1103
[1308]	1104	zdh(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
	1105	zduadj(1:ngrid,1:nlayer)=0.0
	1106	zdvadj(1:ngrid,1:nlayer)=0.0
	1107	zdhadj(1:ngrid,1:nlayer)=0.0
[253]	1108
	1109
[1477]	1110	call convadj(ngrid,nlayer,nq,ptimestep, &
	1111	pplay,pplev,zpopsk, &
	1112	pu,pv,zh,pq, &
	1113	pdu,pdv,zdh,pdq, &
	1114	zduadj,zdvadj,zdhadj, &
	1115	zdqadj)
[253]	1116
[1308]	1117	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zduadj(1:ngrid,1:nlayer)
	1118	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvadj(1:ngrid,1:nlayer)
	1119	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer)
	1120	zdtadj(1:ngrid,1:nlayer) = zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
[1283]	1121
[253]	1122	if(tracer) then
[1308]	1123	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqadj(1:ngrid,1:nlayer,1:nq)
[253]	1124	end if
	1125
[1477]	1126	! Test energy conservation
[253]	1127	if(enertest)then
[1524]	1128	call planetwide_sumval(cppmassarea(:,:)zdtadj(:,:)/totarea_planet,dEtot)
[1295]	1129	if (is_master) print*,'In convadj atmospheric energy change =',dEtot,' W m-2'
[253]	1130	endif
	1131
[1477]	1132	! Test water conservation
[253]	1133	if(watertest)then
[1524]	1134	call planetwide_sumval(massarea(:,:)zdqadj(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dWtot_tmp)
[253]	1135	do ig = 1, ngrid
[1524]	1136	cadjncons(ig)=SUM(mass(ig,:)*zdqadj(ig,:,igcm_h2o_vap))
	1137	enddo
	1138	call planetwide_sumval(massarea(:,:)zdqadj(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
	1139	dWtot = dWtot + dWtot_tmp
[651]	1140	do ig = 1, ngrid
[1524]	1141	cadjncons(ig)=cadjncons(ig) + SUM(mass(ig,:)*zdqadj(ig,:,igcm_h2o_ice))
	1142	enddo
	1143	call planetwide_maxval(cadjncons(:),nconsMAX)
[253]	1144
[1295]	1145	if (is_master) then
[1524]	1146	print*,'In convadj atmospheric water change =',dWtot,' kg m-2'
[1477]	1147	print*,'In convadj MAX non-cons factor =',nconsMAX,' kg m-2 s-1'
[1524]	1148	endif
[1477]	1149
	1150	endif ! end of 'watertest'
[787]	1151
[1477]	1152	endif ! end of 'calladj'
[253]	1153
[1477]	1154	!-----------------------------------------------
	1155	! V. Carbon dioxide condensation-sublimation :
	1156	!-----------------------------------------------
[253]	1157
	1158	if (co2cond) then
[1477]	1159
[253]	1160	if (.not.tracer) then
	1161	print*,'We need a CO2 ice tracer to condense CO2'
	1162	call abort
	1163	endif
[1477]	1164	call condense_co2(ngrid,nlayer,nq,ptimestep, &
	1165	capcal,pplay,pplev,tsurf,pt, &
[1485]	1166	pdt,zdtsurf,pq,pdq, &
	1167	qsurf,zdqsurfc,albedo,emis, &
[1482]	1168	albedo_bareground,albedo_co2_ice_SPECTV, &
[1485]	1169	zdtc,zdtsurfc,pdpsrf,zdqc)
[253]	1170
[1484]	1171	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtc(1:ngrid,1:nlayer)
	1172	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfc(1:ngrid)
[728]	1173
[1484]	1174	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+ zdqc(1:ngrid,1:nlayer,1:nq)
	1175	dqsurf(1:ngrid,igcm_co2_ice) = dqsurf(1:ngrid,igcm_co2_ice) + zdqsurfc(1:ngrid)
[253]	1176
	1177	! test energy conservation
	1178	if(enertest)then
[1524]	1179	call planetwide_sumval(cppmassarea(:,:)zdtc(:,:)/totarea_planet,dEtot)
[1542]	1180	call planetwide_sumval(capcal(:)zdtsurfc(:)cell_area(:)/totarea_planet,dEtots)
[1524]	1181	if (is_master) then
	1182	print*,'In co2cloud atmospheric energy change =',dEtot,' W m-2'
[1477]	1183	print*,'In co2cloud surface energy change =',dEtots,' W m-2'
[1524]	1184	endif
[253]	1185	endif
	1186
[1477]	1187	endif ! end of 'co2cond'
[253]	1188
	1189
[1477]	1190	!---------------------------------------------
	1191	! VI. Specific parameterizations for tracers
	1192	!---------------------------------------------
[253]	1193
[1477]	1194	if (tracer) then
	1195
	1196	! ---------------------
	1197	! VI.1. Water and ice
	1198	! ---------------------
[253]	1199	if (water) then
	1200
[1477]	1201	! Water ice condensation in the atmosphere
[728]	1202	if(watercond.and.(RLVTT.gt.1.e-8))then
[253]	1203
[1524]	1204	dqmoist(1:ngrid,1:nlayer,1:nq)=0.
	1205	dtmoist(1:ngrid,1:nlayer)=0.
[1477]	1206
	1207	! Moist Convective Adjustment.
	1208	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1524]	1209	call moistadj(ngrid,nlayer,nq,pt,pq,pdq,pplev,pplay,dtmoist,dqmoist,ptimestep,rneb_man)
[253]	1210
[1477]	1211	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap) &
[1524]	1212	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_vap)
[1477]	1213	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice) &
	1214	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_ice)
[1308]	1215	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtmoist(1:ngrid,1:nlayer)
[728]	1216
[1477]	1217	! Test energy conservation.
[253]	1218	if(enertest)then
[1477]	1219
[1524]	1220	call planetwide_sumval(cppmassarea(:,:)dtmoist(:,:)/totarea_planet,dEtot)
	1221	call planetwide_maxval(dtmoist(:,:),dtmoist_max)
	1222	call planetwide_minval(dtmoist(:,:),dtmoist_min)
	1223	madjdEz(:,:)=cppmass(:,:)dtmoist(:,:)
[787]	1224	do ig=1,ngrid
[728]	1225	madjdE(ig) = cppSUM(mass(:,:)dtmoist(:,:))
[253]	1226	enddo
[1477]	1227
[1524]	1228	if (is_master) then
[1477]	1229	print*,'In moistadj atmospheric energy change =',dEtot,' W m-2'
	1230	print,'In moistadj MAX atmospheric energy change =',dtmoist_maxptimestep,'K/step'
	1231	print,'In moistadj MIN atmospheric energy change =',dtmoist_minptimestep,'K/step'
[1524]	1232	endif
[1477]	1233
[1524]	1234	call planetwide_sumval(massarea(:,:)dqmoist(:,:,igcm_h2o_vap)ptimestep/totarea_planet+ &
	1235	massarea(:,:)dqmoist(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
	1236	if (is_master) print*,'In moistadj atmospheric water change =',dWtot,' kg m-2'
	1237
[1477]	1238	endif ! end of 'enertest'
[1524]	1239
[253]	1240
[1477]	1241	! Large scale condensation/evaporation.
	1242	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1308]	1243	call largescale(ngrid,nlayer,nq,ptimestep,pplev,pplay,pt,pq,pdt,pdq,dtlscale,dqvaplscale,dqcldlscale,rneb_lsc)
[253]	1244
[1308]	1245	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtlscale(1:ngrid,1:nlayer)
	1246	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap)+dqvaplscale(1:ngrid,1:nlayer)
	1247	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice)+dqcldlscale(1:ngrid,1:nlayer)
[253]	1248
[1477]	1249	! Test energy conservation.
[253]	1250	if(enertest)then
[1016]	1251	lscaledEz(:,:) = cppmass(:,:)dtlscale(:,:)
[787]	1252	do ig=1,ngrid
[728]	1253	lscaledE(ig) = cppSUM(mass(:,:)dtlscale(:,:))
[253]	1254	enddo
[1524]	1255	call planetwide_sumval(cppmassarea(:,:)dtlscale(:,:)/totarea_planet,dEtot)
[1477]	1256
[1524]	1257	if (is_master) print*,'In largescale atmospheric energy change =',dEtot,' W m-2'
[728]	1258
[1477]	1259	! Test water conservation.
[1524]	1260	call planetwide_sumval(massarea(:,:)dqvaplscale(:,:)ptimestep/totarea_planet+ &
	1261	SUM(massarea(:,:)dqcldlscale(:,:))ptimestep/totarea_planet,dWtot)
[1477]	1262
[1524]	1263	if (is_master) print*,'In largescale atmospheric water change =',dWtot,' kg m-2'
[1477]	1264	endif ! end of 'enertest'
[253]	1265
[1477]	1266	! Compute cloud fraction.
[253]	1267	do l = 1, nlayer
[787]	1268	do ig=1,ngrid
[253]	1269	cloudfrac(ig,l)=MAX(rneb_lsc(ig,l),rneb_man(ig,l))
	1270	enddo
	1271	enddo
	1272
[1477]	1273	endif ! end of 'watercond'
[253]	1274
[1477]	1275	! Water ice / liquid precipitation.
	1276	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[728]	1277	if(waterrain)then
[253]	1278
[1308]	1279	zdqrain(1:ngrid,1:nlayer,1:nq) = 0.0
[787]	1280	zdqsrain(1:ngrid) = 0.0
	1281	zdqssnow(1:ngrid) = 0.0
[253]	1282
[1309]	1283	call rain(ngrid,nlayer,nq,ptimestep,pplev,pplay,pt,pdt,pq,pdq, &
[1859]	1284	zdtrain,zdqrain,zdqsrain,zdqssnow,reevap_precip,cloudfrac)
[253]	1285
[1308]	1286	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap) &
[1524]	1287	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap)
[1308]	1288	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice) &
[1524]	1289	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_ice)
[1308]	1290	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtrain(1:ngrid,1:nlayer)
[1477]	1291
	1292	dqsurf(1:ngrid,igcm_h2o_vap) = dqsurf(1:ngrid,igcm_h2o_vap)+zdqsrain(1:ngrid)
	1293	dqsurf(1:ngrid,igcm_h2o_ice) = dqsurf(1:ngrid,igcm_h2o_ice)+zdqssnow(1:ngrid)
[253]	1294
[1477]	1295	! Test energy conservation.
[651]	1296	if(enertest)then
[1477]	1297
[1524]	1298	call planetwide_sumval(cppmassarea(:,:)zdtrain(:,:)/totarea_planet,dEtot)
	1299	if (is_master) print*,'In rain atmospheric T energy change =',dEtot,' W m-2'
	1300	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_ice)/totarea_planetRLVTT/cpp,dItot_tmp)
[1542]	1301	call planetwide_sumval(cell_area(:)zdqssnow(:)/totarea_planetRLVTT/cpp,dItot)
[1524]	1302	dItot = dItot + dItot_tmp
	1303	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dVtot_tmp)
[1542]	1304	call planetwide_sumval(cell_area(:)zdqsrain(:)/totarea_planetRLVTT/cpp,dVtot)
[1524]	1305	dVtot = dVtot + dVtot_tmp
	1306	dEtot = dItot + dVtot
[1477]	1307
[1524]	1308	if (is_master) then
[1477]	1309	print*,'In rain dItot =',dItot,' W m-2'
	1310	print*,'In rain dVtot =',dVtot,' W m-2'
	1311	print*,'In rain atmospheric L energy change =',dEtot,' W m-2'
[1524]	1312	endif
[253]	1313
[1477]	1314	! Test water conservation
[1524]	1315	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_vap)ptimestep/totarea_planet+ &
	1316	massarea(:,:)zdqrain(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
[1542]	1317	call planetwide_sumval((zdqsrain(:)+zdqssnow(:))cell_area(:)ptimestep/totarea_planet,dWtots)
[1477]	1318
[1524]	1319	if (is_master) then
	1320	print*,'In rain atmospheric water change =',dWtot,' kg m-2'
	1321	print*,'In rain surface water change =',dWtots,' kg m-2'
	1322	print*,'In rain non-cons factor =',dWtot+dWtots,' kg m-2'
	1323	endif
[1477]	1324
	1325	endif ! end of 'enertest'
[253]	1326
[1477]	1327	end if ! enf of 'waterrain'
	1328
	1329	end if ! end of 'water'
[253]	1330
[1801]	1331	! -------------------------
	1332	! VI.2. Photochemistry
[1477]	1333	! -------------------------
[1801]	1334
	1335	IF (photochem) then
	1336
	1337	DO ig=1,ngrid
	1338	array_zero1(ig)=0.0
	1339	DO l=1,nlayer
	1340	array_zero2(ig,l)=0.
	1341	ENDDO
	1342	ENDDO
	1343
	1344	call calchim_asis(ngrid,nlayer,nq, &
	1345	ptimestep,pplay,pplev,pt,pdt,dist_star,mu0, &
	1346	fract,zzlev,zzlay,zday,pq,pdq,zdqchim,zdqschim, &
	1347	array_zero1,array_zero1, &
	1348	pu,pdu,pv,pdv,array_zero2,array_zero2)
	1349
	1350	! increment values of tracers:
	1351	DO iq=1,nq ! loop on all tracers; tendencies for non-chemistry
	1352	! tracers is zero anyways
	1353	DO l=1,nlayer
	1354	DO ig=1,ngrid
	1355	pdq(ig,l,iq)=pdq(ig,l,iq)+zdqchim(ig,l,iq)
	1356	ENDDO
	1357	ENDDO
	1358	ENDDO ! of DO iq=1,nq
	1359
	1360
	1361	! increment surface values of tracers:
	1362	DO iq=1,nq ! loop on all tracers; tendencies for non-chemistry
	1363	! tracers is zero anyways
	1364	DO ig=1,ngrid
	1365	! dqsurf(ig,iq)=dqsurf(ig,iq)+zdqschim(ig,iq)
	1366	ENDDO
	1367	ENDDO ! of DO iq=1,nq
	1368
	1369	END IF ! of IF (photochem)
	1370
	1371
	1372
[1477]	1373	! -------------------------
[1801]	1374	! VI.3. Aerosol particles
	1375	! -------------------------
[253]	1376
[1477]	1377	! Sedimentation.
	1378	if (sedimentation) then
	1379
	1380	zdqsed(1:ngrid,1:nlayer,1:nq) = 0.0
	1381	zdqssed(1:ngrid,1:nq) = 0.0
[253]	1382
[1477]	1383	if(watertest)then
	1384
	1385	iq=igcm_h2o_ice
[1524]	1386	call planetwide_sumval(massarea(:,:)pq(:,:,iq)ptimestep/totarea_planet,dWtot)
	1387	call planetwide_sumval(massarea(:,:)pdq(:,:,iq)ptimestep/totarea_planet,dWtots)
	1388	if (is_master) then
	1389	print*,'Before sedim pq =',dWtot,' kg m-2'
[1477]	1390	print*,'Before sedim pdq =',dWtots,' kg m-2'
[1524]	1391	endif
[1477]	1392	endif
	1393
	1394	call callsedim(ngrid,nlayer,ptimestep, &
	1395	pplev,zzlev,pt,pdt,pq,pdq, &
	1396	zdqsed,zdqssed,nq)
[253]	1397
[1477]	1398	if(watertest)then
	1399	iq=igcm_h2o_ice
[1524]	1400	call planetwide_sumval(massarea(:,:)pq(:,:,iq)ptimestep/totarea_planet,dWtot)
	1401	call planetwide_sumval(massarea(:,:)pdq(:,:,iq)ptimestep/totarea_planet,dWtots)
	1402	if (is_master) then
	1403	print*,'After sedim pq =',dWtot,' kg m-2'
	1404	print*,'After sedim pdq =',dWtots,' kg m-2'
	1405	endif
[1477]	1406	endif
[253]	1407
[1477]	1408	! Whether it falls as rain or snow depends only on the surface temperature
	1409	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqsed(1:ngrid,1:nlayer,1:nq)
	1410	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqssed(1:ngrid,1:nq)
[253]	1411
[1477]	1412	! Test water conservation
	1413	if(watertest)then
[1524]	1414	call planetwide_sumval(massarea(:,:)(zdqsed(:,:,igcm_h2o_vap)+zdqsed(:,:,igcm_h2o_ice))ptimestep/totarea_planet,dWtot)
[1542]	1415	call planetwide_sumval((zdqssed(:,igcm_h2o_vap)+zdqssed(:,igcm_h2o_ice))cell_area(:)ptimestep/totarea_planet,dWtots)
[1524]	1416	if (is_master) then
	1417	print*,'In sedim atmospheric ice change =',dWtot,' kg m-2'
	1418	print*,'In sedim surface ice change =',dWtots,' kg m-2'
	1419	print*,'In sedim non-cons factor =',dWtot+dWtots,' kg m-2'
	1420	endif
[1477]	1421	endif
[253]	1422
[1477]	1423	end if ! end of 'sedimentation'
[253]	1424
	1425
[1477]	1426	! ---------------
[1801]	1427	! VI.4. Updates
[1477]	1428	! ---------------
[253]	1429
[1477]	1430	! Updating Atmospheric Mass and Tracers budgets.
[728]	1431	if(mass_redistrib) then
	1432
[1477]	1433	zdmassmr(1:ngrid,1:nlayer) = mass(1:ngrid,1:nlayer) * &
[1524]	1434	( zdqevap(1:ngrid,1:nlayer) &
	1435	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap) &
	1436	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_vap) &
	1437	+ dqvaplscale(1:ngrid,1:nlayer) )
[863]	1438
	1439	do ig = 1, ngrid
[1524]	1440	zdmassmr_col(ig)=SUM(zdmassmr(ig,1:nlayer))
[863]	1441	enddo
[728]	1442
[1524]	1443	call writediagfi(ngrid,"mass_evap","mass gain"," ",3,zdmassmr)
	1444	call writediagfi(ngrid,"mass_evap_col","mass gain col"," ",2,zdmassmr_col)
	1445	call writediagfi(ngrid,"mass","mass","kg/m2",3,mass)
[728]	1446
[1524]	1447	call mass_redistribution(ngrid,nlayer,nq,ptimestep, &
[1477]	1448	rnat,capcal,pplay,pplev,pt,tsurf,pq,qsurf, &
[1524]	1449	pu,pv,pdt,zdtsurf,pdq,pdu,pdv,zdmassmr, &
	1450	zdtmr,zdtsurfmr,zdpsrfmr,zdumr,zdvmr,zdqmr,zdqsurfmr)
	1451
[1308]	1452	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqmr(1:ngrid,1:nlayer,1:nq)
[1477]	1453	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqsurfmr(1:ngrid,1:nq)
	1454	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdtmr(1:ngrid,1:nlayer)
	1455	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zdumr(1:ngrid,1:nlayer)
	1456	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvmr(1:ngrid,1:nlayer)
[1524]	1457	pdpsrf(1:ngrid) = pdpsrf(1:ngrid) + zdpsrfmr(1:ngrid)
[1477]	1458	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfmr(1:ngrid)
[1524]	1459
	1460	endif
[728]	1461
[1477]	1462	! ------------------
[1801]	1463	! VI.5. Slab Ocean
[1477]	1464	! ------------------
[728]	1465
[1477]	1466	if (ok_slab_ocean)then
[728]	1467
[1477]	1468	do ig=1,ngrid
	1469	qsurfint(:,igcm_h2o_ice)=qsurf(:,igcm_h2o_ice)
	1470	enddo
[1297]	1471
[1477]	1472	call ocean_slab_ice(ptimestep, &
	1473	ngrid, knindex, tsea_ice, fluxrad, &
	1474	zdqssnow, qsurf(:,igcm_h2o_ice), &
	1475	- zdqsdif(:,igcm_h2o_vap), &
	1476	flux_sens_lat,tsea_ice, pctsrf_sic, &
	1477	taux,tauy,icount)
[1297]	1478
	1479
[1477]	1480	call ocean_slab_get_vars(ngrid,tslab, &
	1481	sea_ice, flux_o, &
	1482	flux_g, dt_hdiff, &
	1483	dt_ekman)
	1484
[1297]	1485	do ig=1,ngrid
	1486	if (nint(rnat(ig)).eq.1)then
[1477]	1487	tslab(ig,1) = 0.
	1488	tslab(ig,2) = 0.
	1489	tsea_ice(ig) = 0.
	1490	sea_ice(ig) = 0.
	1491	pctsrf_sic(ig) = 0.
	1492	qsurf(ig,igcm_h2o_ice) = qsurfint(ig,igcm_h2o_ice)
[1297]	1493	endif
	1494	enddo
	1495
[1477]	1496	endif ! end of 'ok_slab_ocean'
[1297]	1497
[1477]	1498	! -----------------------------
[1801]	1499	! VI.6. Surface Tracer Update
[1477]	1500	! -----------------------------
[1297]	1501
[253]	1502	if(hydrology)then
[1297]	1503
[1482]	1504	call hydrol(ngrid,nq,ptimestep,rnat,tsurf,qsurf,dqsurf,dqs_hyd, &
	1505	capcal,albedo,albedo_bareground, &
[1524]	1506	albedo_snow_SPECTV,albedo_co2_ice_SPECTV, &
[1482]	1507	mu0,zdtsurf,zdtsurf_hyd,hice,pctsrf_sic, &
[1477]	1508	sea_ice)
[253]	1509
[1484]	1510	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurf_hyd(1:ngrid)
	1511	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + dqs_hyd(1:ngrid,1:nq)
	1512
	1513	qsurf(1:ngrid,1:nq) = qsurf(1:ngrid,1:nq) + ptimestep*dqsurf(1:ngrid,1:nq)
[253]	1514
[1477]	1515	! Test energy conservation
[253]	1516	if(enertest)then
[1542]	1517	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf_hyd(:)/totarea_planet,dEtots)
[1524]	1518	if (is_master) print*,'In hydrol surface energy change =',dEtots,' W m-2'
[253]	1519	endif
	1520
	1521	! test water conservation
	1522	if(watertest)then
[1542]	1523	call planetwide_sumval(dqs_hyd(:,igcm_h2o_ice)cell_area(:)ptimestep/totarea_planet,dWtots)
[1524]	1524	if (is_master) print*,'In hydrol surface ice change =',dWtots,' kg m-2'
[1542]	1525	call planetwide_sumval(dqs_hyd(:,igcm_h2o_vap)cell_area(:)ptimestep/totarea_planet,dWtots)
[1524]	1526	if (is_master) then
[1477]	1527	print*,'In hydrol surface water change =',dWtots,' kg m-2'
	1528	print*,'---------------------------------------------------------------'
[1524]	1529	endif
[253]	1530	endif
	1531
[1477]	1532	else ! of if (hydrology)
[253]	1533
[1484]	1534	qsurf(1:ngrid,1:nq) = qsurf(1:ngrid,1:nq) + ptimestep*dqsurf(1:ngrid,1:nq)
[253]	1535
[1477]	1536	end if ! of if (hydrology)
[253]	1537
[1477]	1538	! Add qsurf to qsurf_hist, which is what we save in diagfi.nc. At the same time, we set the water
	1539	! content of ocean gridpoints back to zero, in order to avoid rounding errors in vdifc, rain.
[622]	1540	qsurf_hist(:,:) = qsurf(:,:)
[253]	1541
	1542	if(ice_update)then
[787]	1543	ice_min(1:ngrid)=min(ice_min(1:ngrid),qsurf(1:ngrid,igcm_h2o_ice))
[253]	1544	endif
	1545
[1477]	1546	endif! end of if 'tracer'
[253]	1547
	1548
[1477]	1549	!------------------------------------------------
	1550	! VII. Surface and sub-surface soil temperature
	1551	!------------------------------------------------
[253]	1552
[1477]	1553
	1554	! Increment surface temperature
[1297]	1555	if(ok_slab_ocean)then
	1556	do ig=1,ngrid
	1557	if (nint(rnat(ig)).eq.0)then
	1558	zdtsurf(ig)= (tslab(ig,1) &
	1559	+ pctsrf_sic(ig)*(tsea_ice(ig)-tslab(ig,1))-tsurf(ig))/ptimestep
	1560	endif
	1561	tsurf(ig)=tsurf(ig)+ptimestep*zdtsurf(ig)
	1562	enddo
	1563
	1564	else
	1565	tsurf(1:ngrid)=tsurf(1:ngrid)+ptimestep*zdtsurf(1:ngrid)
[1477]	1566	endif ! end of 'ok_slab_ocean'
[1297]	1567
[1477]	1568
	1569	! Compute soil temperatures and subsurface heat flux.
[253]	1570	if (callsoil) then
[787]	1571	call soil(ngrid,nsoilmx,.false.,lastcall,inertiedat, &
[1477]	1572	ptimestep,tsurf,tsoil,capcal,fluxgrd)
[253]	1573	endif
	1574
[1297]	1575
	1576	if (ok_slab_ocean) then
[1477]	1577
	1578	do ig=1,ngrid
	1579
	1580	fluxgrdocean(ig)=fluxgrd(ig)
	1581	if (nint(rnat(ig)).eq.0) then
[1297]	1582	capcal(ig)=capcalocean
	1583	fluxgrd(ig)=0.
	1584	fluxgrdocean(ig)=pctsrf_sic(ig)flux_g(ig)+(1-pctsrf_sic(ig))(dt_hdiff(ig,1)+dt_ekman(ig,1))
[1477]	1585	do iq=1,nsoilmx
	1586	tsoil(ig,iq)=tsurf(ig)
	1587	enddo
	1588	if (pctsrf_sic(ig).gt.0.5) then
	1589	capcal(ig)=capcalseaice
	1590	if (qsurf(ig,igcm_h2o_ice).gt.0.) then
	1591	capcal(ig)=capcalsno
	1592	endif
	1593	endif
	1594	endif
	1595
	1596	enddo
	1597
	1598	endif !end of 'ok_slab_ocean'
[1297]	1599
[1477]	1600
	1601	! Test energy conservation
[253]	1602	if(enertest)then
[1542]	1603	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf(:)/totarea_planet,dEtots)
[1524]	1604	if (is_master) print*,'Surface energy change =',dEtots,' W m-2'
[253]	1605	endif
	1606
	1607
[1477]	1608	!---------------------------------------------------
	1609	! VIII. Perform diagnostics and write output files
	1610	!---------------------------------------------------
	1611
	1612	! Note : For output only: the actual model integration is performed in the dynamics.
	1613
	1614
[253]	1615
[1477]	1616	! Temperature, zonal and meridional winds.
[1308]	1617	zt(1:ngrid,1:nlayer) = pt(1:ngrid,1:nlayer) + pdt(1:ngrid,1:nlayer)*ptimestep
	1618	zu(1:ngrid,1:nlayer) = pu(1:ngrid,1:nlayer) + pdu(1:ngrid,1:nlayer)*ptimestep
	1619	zv(1:ngrid,1:nlayer) = pv(1:ngrid,1:nlayer) + pdv(1:ngrid,1:nlayer)*ptimestep
[253]	1620
[1477]	1621	! Diagnostic.
[1637]	1622	zdtdyn(1:ngrid,1:nlayer) = (pt(1:ngrid,1:nlayer)-ztprevious(1:ngrid,1:nlayer)) / ptimestep
[1308]	1623	ztprevious(1:ngrid,1:nlayer) = zt(1:ngrid,1:nlayer)
[253]	1624
[1637]	1625	zdudyn(1:ngrid,1:nlayer) = (pu(1:ngrid,1:nlayer)-zuprevious(1:ngrid,1:nlayer)) / ptimestep
	1626	zuprevious(1:ngrid,1:nlayer) = zu(1:ngrid,1:nlayer)
	1627
[253]	1628	if(firstcall)then
[1308]	1629	zdtdyn(1:ngrid,1:nlayer)=0.0
[1637]	1630	zdudyn(1:ngrid,1:nlayer)=0.0
[253]	1631	endif
	1632
[1477]	1633	! Dynamical heating diagnostic.
[253]	1634	do ig=1,ngrid
[1637]	1635	fluxdyn(ig)= SUM(zdtdyn(ig,:) mass(ig,:))cpp
[253]	1636	enddo
	1637
[1477]	1638	! Tracers.
[1308]	1639	zq(1:ngrid,1:nlayer,1:nq) = pq(1:ngrid,1:nlayer,1:nq) + pdq(1:ngrid,1:nlayer,1:nq)*ptimestep
[253]	1640
[1477]	1641	! Surface pressure.
[787]	1642	ps(1:ngrid) = pplev(1:ngrid,1) + pdpsrf(1:ngrid)*ptimestep
[253]	1643
	1644
	1645
[1477]	1646	! Surface and soil temperature information
[1542]	1647	call planetwide_sumval(cell_area(:)*tsurf(:)/totarea_planet,Ts1)
[1295]	1648	call planetwide_minval(tsurf(:),Ts2)
	1649	call planetwide_maxval(tsurf(:),Ts3)
[253]	1650	if(callsoil)then
[1542]	1651	TsS = SUM(cell_area(:)*tsoil(:,nsoilmx))/totarea ! mean temperature at bottom soil layer
[1699]	1652	if (is_master) then
	1653	print*,' ave[Tsurf] min[Tsurf] max[Tsurf] ave[Tdeep]'
	1654	print*,Ts1,Ts2,Ts3,TsS
	1655	end if
[959]	1656	else
[1699]	1657	if (is_master) then
	1658	print*,' ave[Tsurf] min[Tsurf] max[Tsurf]'
[1477]	1659	print*,Ts1,Ts2,Ts3
[1524]	1660	endif
[959]	1661	end if
[253]	1662
	1663
[1477]	1664	! Check the energy balance of the simulation during the run
[253]	1665	if(corrk)then
	1666
[1542]	1667	call planetwide_sumval(cell_area(:)*fluxtop_dn(:)/totarea_planet,ISR)
	1668	call planetwide_sumval(cell_area(:)*fluxabs_sw(:)/totarea_planet,ASR)
	1669	call planetwide_sumval(cell_area(:)*fluxtop_lw(:)/totarea_planet,OLR)
	1670	call planetwide_sumval(cell_area(:)*fluxgrd(:)/totarea_planet,GND)
	1671	call planetwide_sumval(cell_area(:)*fluxdyn(:)/totarea_planet,DYN)
[787]	1672	do ig=1,ngrid
[253]	1673	if(fluxtop_dn(ig).lt.0.0)then
	1674	print*,'fluxtop_dn has gone crazy'
	1675	print*,'fluxtop_dn=',fluxtop_dn(ig)
	1676	print*,'tau_col=',tau_col(ig)
	1677	print*,'aerosol=',aerosol(ig,:,:)
	1678	print*,'temp= ',pt(ig,:)
	1679	print*,'pplay= ',pplay(ig,:)
	1680	call abort
	1681	endif
	1682	end do
	1683
[787]	1684	if(ngrid.eq.1)then
[253]	1685	DYN=0.0
	1686	endif
[1524]	1687
	1688	if (is_master) then
[1477]	1689	print*,' ISR ASR OLR GND DYN [W m^-2]'
	1690	print*, ISR,ASR,OLR,GND,DYN
[1524]	1691	endif
[253]	1692
[1295]	1693	if(enertest .and. is_master)then
[651]	1694	print*,'SW flux/heating difference SW++ - ASR = ',dEtotSW+dEtotsSW-ASR,' W m-2'
	1695	print*,'LW flux/heating difference LW++ - OLR = ',dEtotLW+dEtotsLW+OLR,' W m-2'
	1696	print*,'LW energy balance LW++ + ASR = ',dEtotLW+dEtotsLW+ASR,' W m-2'
[253]	1697	endif
	1698
[1295]	1699	if(meanOLR .and. is_master)then
[1216]	1700	if((ngrid.gt.1) .or. (mod(icount-1,ecritphy).eq.0))then
[253]	1701	! to record global radiative balance
[588]	1702	open(92,file="rad_bal.out",form='formatted',position='append')
[651]	1703	write(92,*) zday,ISR,ASR,OLR
[253]	1704	close(92)
[588]	1705	open(93,file="tem_bal.out",form='formatted',position='append')
[1295]	1706	if(callsoil)then
[1524]	1707	write(93,*) zday,Ts1,Ts2,Ts3,TsS
	1708	else
	1709	write(93,*) zday,Ts1,Ts2,Ts3
	1710	endif
[253]	1711	close(93)
	1712	endif
	1713	endif
	1714
[1477]	1715	endif ! end of 'corrk'
[253]	1716
[651]	1717
[1477]	1718	! Diagnostic to test radiative-convective timescales in code.
[253]	1719	if(testradtimes)then
[588]	1720	open(38,file="tau_phys.out",form='formatted',position='append')
[253]	1721	ig=1
	1722	do l=1,nlayer
	1723	write(38,*) -1./pdt(ig,l),pt(ig,l),pplay(ig,l)
	1724	enddo
	1725	close(38)
[726]	1726	print*,'As testradtimes enabled,'
	1727	print*,'exiting physics on first call'
[253]	1728	call abort
	1729	endif
	1730
[1477]	1731
	1732	! Compute column amounts (kg m-2) if tracers are enabled.
[253]	1733	if(tracer)then
[787]	1734	qcol(1:ngrid,1:nq)=0.0
[253]	1735	do iq=1,nq
[1477]	1736	do ig=1,ngrid
	1737	qcol(ig,iq) = SUM( zq(ig,1:nlayer,iq) * mass(ig,1:nlayer))
	1738	enddo
[253]	1739	enddo
	1740
[1477]	1741	! Generalised for arbitrary aerosols now. By LK
[787]	1742	reffcol(1:ngrid,1:naerkind)=0.0
[728]	1743	if(co2cond.and.(iaero_co2.ne.0))then
[1308]	1744	call co2_reffrad(ngrid,nlayer,nq,zq,reffrad(1,1,iaero_co2))
[787]	1745	do ig=1,ngrid
[1308]	1746	reffcol(ig,iaero_co2) = SUM(zq(ig,1:nlayer,igcm_co2_ice)reffrad(ig,1:nlayer,iaero_co2)mass(ig,1:nlayer))
[253]	1747	enddo
[728]	1748	endif
	1749	if(water.and.(iaero_h2o.ne.0))then
[1308]	1750	call h2o_reffrad(ngrid,nlayer,zq(1,1,igcm_h2o_ice),zt, &
[858]	1751	reffrad(1,1,iaero_h2o),nueffrad(1,1,iaero_h2o))
[787]	1752	do ig=1,ngrid
[1308]	1753	reffcol(ig,iaero_h2o) = SUM(zq(ig,1:nlayer,igcm_h2o_ice)reffrad(ig,1:nlayer,iaero_h2o)mass(ig,1:nlayer))
[728]	1754	enddo
	1755	endif
[253]	1756
[1477]	1757	endif ! end of 'tracer'
[253]	1758
	1759
[1477]	1760	! Test for water conservation.
[253]	1761	if(water)then
	1762
[1542]	1763	call planetwide_sumval(cell_area(:)*qsurf_hist(:,igcm_h2o_ice)/totarea_planet,icesrf)
	1764	call planetwide_sumval(cell_area(:)*qsurf_hist(:,igcm_h2o_vap)/totarea_planet,liqsrf)
	1765	call planetwide_sumval(cell_area(:)*qcol(:,igcm_h2o_ice)/totarea_planet,icecol)
	1766	call planetwide_sumval(cell_area(:)*qcol(:,igcm_h2o_vap)/totarea_planet,vapcol)
[253]	1767
[651]	1768	h2otot = icesrf + liqsrf + icecol + vapcol
[1524]	1769
	1770	if (is_master) then
[1477]	1771	print*,' Total water amount [kg m^-2]: ',h2otot
	1772	print*,' Surface ice Surface liq. Atmos. con. Atmos. vap. [kg m^-2] '
	1773	print*, icesrf,liqsrf,icecol,vapcol
[1524]	1774	endif
[253]	1775
[1295]	1776	if(meanOLR .and. is_master)then
[1216]	1777	if((ngrid.gt.1) .or. (mod(icount-1,ecritphy).eq.0))then
[253]	1778	! to record global water balance
[588]	1779	open(98,file="h2o_bal.out",form='formatted',position='append')
[651]	1780	write(98,*) zday,icesrf,liqsrf,icecol,vapcol
[253]	1781	close(98)
	1782	endif
	1783	endif
	1784
	1785	endif
	1786
	1787
[1477]	1788	! Calculate RH (Relative Humidity) for diagnostic.
[253]	1789	if(water)then
[1477]	1790
[253]	1791	do l = 1, nlayer
[787]	1792	do ig=1,ngrid
[728]	1793	call Psat_water(zt(ig,l),pplay(ig,l),psat_tmp,qsat(ig,l))
[253]	1794	RH(ig,l) = zq(ig,l,igcm_h2o_vap) / qsat(ig,l)
	1795	enddo
	1796	enddo
	1797
[1477]	1798	! Compute maximum possible H2O column amount (100% saturation).
[253]	1799	do ig=1,ngrid
[1477]	1800	H2Omaxcol(ig) = SUM( qsat(ig,:) * mass(ig,:))
[253]	1801	enddo
	1802
[1477]	1803	endif ! end of 'water'
[253]	1804
[996]	1805
[1699]	1806	if (is_master) print,'--> Ls =',zls180./pi
[1477]	1807
	1808
	1809	!----------------------------------------------------------------------
[253]	1810	! Writing NetCDF file "RESTARTFI" at the end of the run
[1477]	1811	!----------------------------------------------------------------------
	1812
[253]	1813	! Note: 'restartfi' is stored just before dynamics are stored
	1814	! in 'restart'. Between now and the writting of 'restart',
	1815	! there will have been the itau=itau+1 instruction and
	1816	! a reset of 'time' (lastacll = .true. when itau+1= itaufin)
	1817	! thus we store for time=time+dtvr
	1818
	1819
	1820
[1477]	1821	if(lastcall) then
	1822	ztime_fin = ptime + ptimestep/(float(iphysiq)*daysec)
[305]	1823
[1477]	1824	! Update surface ice distribution to iterate to steady state if requested
	1825	if(ice_update)then
[253]	1826
[1477]	1827	do ig=1,ngrid
[305]	1828
[1477]	1829	delta_ice = (qsurf(ig,igcm_h2o_ice)-ice_initial(ig))
	1830
	1831	! add multiple years of evolution
	1832	qsurf_hist(ig,igcm_h2o_ice) = qsurf_hist(ig,igcm_h2o_ice) + delta_ice*icetstep
[305]	1833
[1477]	1834	! if ice has gone -ve, set to zero
	1835	if(qsurf_hist(ig,igcm_h2o_ice).lt.0.0)then
	1836	qsurf_hist(ig,igcm_h2o_ice) = 0.0
	1837	endif
[305]	1838
[1477]	1839	! if ice is seasonal, set to zero (NEW)
	1840	if(ice_min(ig).lt.0.01)then
	1841	qsurf_hist(ig,igcm_h2o_ice) = 0.0
	1842	endif
[253]	1843
[1477]	1844	enddo
[305]	1845
[1477]	1846	! enforce ice conservation
[1542]	1847	ice_tot= SUM(qsurf_hist(:,igcm_h2o_ice)*cell_area(:) )/SUM(cell_area(:))
[1477]	1848	qsurf_hist(:,igcm_h2o_ice) = qsurf_hist(:,igcm_h2o_ice)*(icesrf/ice_tot)
[305]	1849
[1477]	1850	endif
[1836]	1851	#ifndef MESOSCALE
	1852
[1477]	1853	if (ngrid.ne.1) then
	1854	write(,)'PHYSIQ: for physdem ztime_fin =',ztime_fin
	1855
	1856	call physdem1("restartfi.nc",nsoilmx,ngrid,nlayer,nq, &
	1857	ptimestep,ztime_fin, &
	1858	tsurf,tsoil,emis,q2,qsurf_hist, &
	1859	cloudfrac,totcloudfrac,hice, &
	1860	rnat,pctsrf_sic,tslab,tsea_ice,sea_ice)
	1861	endif
[1836]	1862	#endif
[1477]	1863	if(ok_slab_ocean) then
	1864	call ocean_slab_final!(tslab, seaice)
	1865	end if
[1297]	1866
[1682]	1867	endif ! end of 'lastcall'
[253]	1868
[861]	1869
[1477]	1870	!-----------------------------------
[253]	1871	! Saving statistics :
[1477]	1872	!-----------------------------------
[253]	1873
[1477]	1874	! Note :("stats" stores and accumulates 8 key variables in file "stats.nc"
	1875	! which can later be used to make the statistic files of the run:
	1876	! "stats") only possible in 3D runs !!!
	1877
[253]	1878
[1477]	1879	if (callstats) then
[253]	1880
[1477]	1881	call wstats(ngrid,"ps","Surface pressure","Pa",2,ps)
	1882	call wstats(ngrid,"tsurf","Surface temperature","K",2,tsurf)
	1883	call wstats(ngrid,"fluxsurf_lw", &
	1884	"Thermal IR radiative flux to surface","W.m-2",2, &
	1885	fluxsurf_lw)
	1886	call wstats(ngrid,"fluxtop_lw", &
	1887	"Thermal IR radiative flux to space","W.m-2",2, &
	1888	fluxtop_lw)
	1889
[253]	1890	! call wstats(ngrid,"fluxsurf_sw", &
	1891	! "Solar radiative flux to surface","W.m-2",2, &
[1477]	1892	! fluxsurf_sw_tot)
[253]	1893	! call wstats(ngrid,"fluxtop_sw", &
	1894	! "Solar radiative flux to space","W.m-2",2, &
	1895	! fluxtop_sw_tot)
[526]	1896
[253]	1897
[1477]	1898	call wstats(ngrid,"ISR","incoming stellar rad.","W m-2",2,fluxtop_dn)
	1899	call wstats(ngrid,"ASR","absorbed stellar rad.","W m-2",2,fluxabs_sw)
	1900	call wstats(ngrid,"OLR","outgoing longwave rad.","W m-2",2,fluxtop_lw)
[1482]	1901	!call wstats(ngrid,"ALB","Surface albedo"," ",2,albedo_equivalent)
	1902	!call wstats(ngrid,"ALB_1st","First Band Surface albedo"," ",2,albedo(:,1))
[1477]	1903	call wstats(ngrid,"p","Pressure","Pa",3,pplay)
	1904	call wstats(ngrid,"temp","Atmospheric temperature","K",3,zt)
	1905	call wstats(ngrid,"u","Zonal (East-West) wind","m.s-1",3,zu)
	1906	call wstats(ngrid,"v","Meridional (North-South) wind","m.s-1",3,zv)
	1907	call wstats(ngrid,"w","Vertical (down-up) wind","m.s-1",3,pw)
	1908	call wstats(ngrid,"q2","Boundary layer eddy kinetic energy","m2.s-2",3,q2)
[526]	1909
[1477]	1910	if (tracer) then
	1911	do iq=1,nq
	1912	call wstats(ngrid,noms(iq),noms(iq),'kg/kg',3,zq(1,1,iq))
	1913	call wstats(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
	1914	'kg m^-2',2,qsurf(1,iq) )
	1915	call wstats(ngrid,trim(noms(iq))//'_col',trim(noms(iq))//'_col', &
[526]	1916	'kg m^-2',2,qcol(1,iq) )
[1477]	1917
	1918	! call wstats(ngrid,trim(noms(iq))//'_reff', &
[726]	1919	! trim(noms(iq))//'_reff', &
	1920	! 'm',3,reffrad(1,1,iq))
[1477]	1921
	1922	end do
	1923
[253]	1924	if (water) then
[1308]	1925	vmr=zq(1:ngrid,1:nlayer,igcm_h2o_vap)*mugaz/mmol(igcm_h2o_vap)
[1477]	1926	call wstats(ngrid,"vmr_h2ovapor", &
	1927	"H2O vapour volume mixing ratio","mol/mol", &
	1928	3,vmr)
	1929	endif
[253]	1930
[1477]	1931	endif ! end of 'tracer'
[253]	1932
[1477]	1933	if(watercond.and.CLFvarying)then
	1934	call wstats(ngrid,"rneb_man","H2O cloud fraction (conv)"," ",3,rneb_man)
	1935	call wstats(ngrid,"rneb_lsc","H2O cloud fraction (large scale)"," ",3,rneb_lsc)
	1936	call wstats(ngrid,"CLF","H2O cloud fraction"," ",3,cloudfrac)
	1937	call wstats(ngrid,"CLFt","H2O column cloud fraction"," ",2,totcloudfrac)
	1938	call wstats(ngrid,"RH","relative humidity"," ",3,RH)
	1939	endif
[1297]	1940
[1477]	1941	if (ok_slab_ocean) then
[1297]	1942	call wstats(ngrid,"dt_hdiff1","dt_hdiff1","K/s",2,dt_hdiff(:,1))
	1943	call wstats(ngrid,"dt_hdiff2","dt_hdiff2","K/s",2,dt_hdiff(:,2))
	1944	call wstats(ngrid,"dt_ekman1","dt_ekman1","K/s",2,dt_ekman(:,1))
	1945	call wstats(ngrid,"dt_ekman2","dt_ekman2","K/s",2,dt_ekman(:,2))
	1946	call wstats(ngrid,"tslab1","tslab1","K",2,tslab(:,1))
	1947	call wstats(ngrid,"tslab2","tslab2","K",2,tslab(:,2))
	1948	call wstats(ngrid,"pctsrf_sic","pct ice/sea","",2,pctsrf_sic)
	1949	call wstats(ngrid,"tsea_ice","tsea_ice","K",2,tsea_ice)
	1950	call wstats(ngrid,"sea_ice","sea ice","kg/m2",2,sea_ice)
	1951	call wstats(ngrid,"rnat","nature of the surface","",2,rnat)
[1477]	1952	endif
[1297]	1953
[1477]	1954	if(lastcall) then
	1955	write (,) "Writing stats..."
	1956	call mkstats(ierr)
	1957	endif
	1958
	1959	endif ! end of 'callstats'
[253]	1960
[1836]	1961	#ifndef MESOSCALE
	1962
[1477]	1963	!-----------------------------------------------------------------------------------------------------
	1964	! OUTPUT in netcdf file "DIAGFI.NC", containing any variable for diagnostic
	1965	!
	1966	! Note 1 : output with period "ecritphy", set in "run.def"
	1967	!
	1968	! Note 2 : writediagfi can also be called from any other subroutine for any variable,
	1969	! but its preferable to keep all the calls in one place ...
	1970	!-----------------------------------------------------------------------------------------------------
[253]	1971
[1477]	1972	call writediagfi(ngrid,"Ls","solar longitude","deg",0,zls*180./pi)
	1973	call writediagfi(ngrid,"Lss","sub solar longitude","deg",0,zlss*180./pi)
	1974	call writediagfi(ngrid,"RA","right ascension","deg",0,right_ascen*180./pi)
	1975	call writediagfi(ngrid,"Declin","solar declination","deg",0,declin*180./pi)
	1976	call writediagfi(ngrid,"tsurf","Surface temperature","K",2,tsurf)
	1977	call writediagfi(ngrid,"ps","Surface pressure","Pa",2,ps)
	1978	call writediagfi(ngrid,"temp","temperature","K",3,zt)
	1979	call writediagfi(ngrid,"teta","potential temperature","K",3,zh)
	1980	call writediagfi(ngrid,"u","Zonal wind","m.s-1",3,zu)
	1981	call writediagfi(ngrid,"v","Meridional wind","m.s-1",3,zv)
	1982	call writediagfi(ngrid,"w","Vertical wind","m.s-1",3,pw)
	1983	call writediagfi(ngrid,"p","Pressure","Pa",3,pplay)
	1984
[965]	1985	! Subsurface temperatures
[969]	1986	! call writediagsoil(ngrid,"tsurf","Surface temperature","K",2,tsurf)
	1987	! call writediagsoil(ngrid,"temp","temperature","K",3,tsoil)
[965]	1988
[1477]	1989	! Oceanic layers
	1990	if(ok_slab_ocean) then
	1991	call writediagfi(ngrid,"pctsrf_sic","pct ice/sea","",2,pctsrf_sic)
	1992	call writediagfi(ngrid,"tsea_ice","tsea_ice","K",2,tsea_ice)
	1993	call writediagfi(ngrid,"sea_ice","sea ice","kg/m2",2,sea_ice)
	1994	call writediagfi(ngrid,"tslab1","tslab1","K",2,tslab(:,1))
	1995	call writediagfi(ngrid,"tslab2","tslab2","K",2,tslab(:,2))
	1996	call writediagfi(ngrid,"dt_hdiff1","dt_hdiff1","K/s",2,dt_hdiff(:,1))
	1997	call writediagfi(ngrid,"dt_hdiff2","dt_hdiff2","K/s",2,dt_hdiff(:,2))
	1998	call writediagfi(ngrid,"dt_ekman1","dt_ekman1","K/s",2,dt_ekman(:,1))
	1999	call writediagfi(ngrid,"dt_ekman2","dt_ekman2","K/s",2,dt_ekman(:,2))
	2000	call writediagfi(ngrid,"rnat","nature of the surface","",2,rnat)
	2001	call writediagfi(ngrid,"sensibFlux","sensible heat flux","w.m^-2",2,sensibFlux)
	2002	call writediagfi(ngrid,"latentFlux","latent heat flux","w.m^-2",2,zdqsdif(:,igcm_h2o_vap)*RLVTT)
	2003	endif
	2004
[1297]	2005
[1477]	2006	! Total energy balance diagnostics
	2007	if(callrad.and.(.not.newtonian))then
	2008
[1482]	2009	!call writediagfi(ngrid,"ALB","Surface albedo"," ",2,albedo_equivalent)
	2010	!call writediagfi(ngrid,"ALB_1st","First Band Surface albedo"," ",2,albedo(:,1))
[1477]	2011	call writediagfi(ngrid,"ISR","incoming stellar rad.","W m-2",2,fluxtop_dn)
	2012	call writediagfi(ngrid,"ASR","absorbed stellar rad.","W m-2",2,fluxabs_sw)
	2013	call writediagfi(ngrid,"OLR","outgoing longwave rad.","W m-2",2,fluxtop_lw)
	2014	call writediagfi(ngrid,"shad","rings"," ", 2, fract)
	2015
[1016]	2016	! call writediagfi(ngrid,"ASRcs","absorbed stellar rad (cs).","W m-2",2,fluxabs_sw1)
	2017	! call writediagfi(ngrid,"OLRcs","outgoing longwave rad (cs).","W m-2",2,fluxtop_lw1)
	2018	! call writediagfi(ngrid,"fluxsurfsw","sw surface flux.","W m-2",2,fluxsurf_sw)
	2019	! call writediagfi(ngrid,"fluxsurflw","lw back radiation.","W m-2",2,fluxsurf_lw)
	2020	! call writediagfi(ngrid,"fluxsurfswcs","sw surface flux (cs).","W m-2",2,fluxsurf_sw1)
	2021	! call writediagfi(ngrid,"fluxsurflwcs","lw back radiation (cs).","W m-2",2,fluxsurf_lw1)
[1477]	2022
	2023	if(ok_slab_ocean) then
	2024	call writediagfi(ngrid,"GND","heat flux from ground","W m-2",2,fluxgrdocean)
	2025	else
	2026	call writediagfi(ngrid,"GND","heat flux from ground","W m-2",2,fluxgrd)
	2027	endif
	2028
	2029	call writediagfi(ngrid,"DYN","dynamical heat input","W m-2",2,fluxdyn)
	2030
	2031	endif ! end of 'callrad'
[1524]	2032
[1477]	2033	if(enertest) then
	2034
[1524]	2035	if (calldifv) then
[1477]	2036
[1524]	2037	call writediagfi(ngrid,"q2","turbulent kinetic energy","J.kg^-1",3,q2)
[1477]	2038	call writediagfi(ngrid,"sensibFlux","sensible heat flux","w.m^-2",2,sensibFlux)
	2039
[1524]	2040	! call writediagfi(ngrid,"dEzdiff","turbulent diffusion heating (-sensible flux)","w.m^-2",3,dEzdiff)
	2041	! call writediagfi(ngrid,"dEdiff","integrated turbulent diffusion heating (-sensible flux)","w.m^-2",2,dEdiff)
	2042	! call writediagfi(ngrid,"dEdiffs","In TurbDiff (correc rad+latent heat) surf nrj change","w.m^-2",2,dEdiffs)
	2043
	2044	endif
[1477]	2045
[1524]	2046	if (corrk) then
	2047	call writediagfi(ngrid,"dEzradsw","radiative heating","w.m^-2",3,dEzradsw)
	2048	call writediagfi(ngrid,"dEzradlw","radiative heating","w.m^-2",3,dEzradlw)
	2049	endif
[1477]	2050
	2051	if(watercond) then
	2052
[1524]	2053	call writediagfi(ngrid,"lscaledE","heat from largescale","W m-2",2,lscaledE)
	2054	call writediagfi(ngrid,"madjdE","heat from moistadj","W m-2",2,madjdE)
	2055	call writediagfi(ngrid,"qsatatm","atm qsat"," ",3,qsat)
[1477]	2056
[1524]	2057	! call writediagfi(ngrid,"lscaledEz","heat from largescale","W m-2",3,lscaledEz)
	2058	! call writediagfi(ngrid,"madjdEz","heat from moistadj","W m-2",3,madjdEz)
	2059	! call writediagfi(ngrid,"h2o_max_col","maximum H2O column amount","kg.m^-2",2,H2Omaxcol)
[253]	2060
[1477]	2061	endif
	2062
	2063	endif ! end of 'enertest'
[253]	2064
[1477]	2065
	2066	! Temporary inclusions for heating diagnostics.
	2067	!call writediagfi(ngrid,"zdtsw","SW heating","T s-1",3,zdtsw)
	2068	!call writediagfi(ngrid,"zdtlw","LW heating","T s-1",3,zdtlw)
	2069	!call writediagfi(ngrid,"dtrad","radiative heating","K s-1",3,dtrad)
	2070	! call writediagfi(ngrid,"zdtdyn","Dyn. heating","T s-1",3,zdtdyn)
	2071
	2072	! For Debugging.
[368]	2073	!call writediagfi(ngrid,'rnat','Terrain type',' ',2,real(rnat))
[253]	2074	!call writediagfi(ngrid,'pphi','Geopotential',' ',3,pphi)
[1477]	2075
[253]	2076
[1477]	2077	! Output aerosols.
	2078	if (igcm_co2_ice.ne.0.and.iaero_co2.ne.0) &
[1524]	2079	call writediagfi(ngrid,'CO2ice_reff','CO2ice_reff','m',3,reffrad(1,1,iaero_co2))
[1477]	2080	if (igcm_h2o_ice.ne.0.and.iaero_h2o.ne.0) &
[1524]	2081	call writediagfi(ngrid,'H2Oice_reff','H2Oice_reff','m',3,reffrad(:,:,iaero_h2o))
[1477]	2082	if (igcm_co2_ice.ne.0.and.iaero_co2.ne.0) &
[1524]	2083	call writediagfi(ngrid,'CO2ice_reffcol','CO2ice_reffcol','um kg m^-2',2,reffcol(1,iaero_co2))
[1477]	2084	if (igcm_h2o_ice.ne.0.and.iaero_h2o.ne.0) &
[1524]	2085	call writediagfi(ngrid,'H2Oice_reffcol','H2Oice_reffcol','um kg m^-2',2,reffcol(1,iaero_h2o))
[253]	2086
[1477]	2087	! Output tracers.
	2088	if (tracer) then
	2089
	2090	do iq=1,nq
	2091	call writediagfi(ngrid,noms(iq),noms(iq),'kg/kg',3,zq(1,1,iq))
	2092	call writediagfi(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
	2093	'kg m^-2',2,qsurf_hist(1,iq) )
	2094	call writediagfi(ngrid,trim(noms(iq))//'_col',trim(noms(iq))//'_col', &
	2095	'kg m^-2',2,qcol(1,iq) )
	2096
[787]	2097	! call writediagfi(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
[1477]	2098	! 'kg m^-2',2,qsurf(1,iq) )
[253]	2099
[1477]	2100	if(watercond.or.CLFvarying)then
	2101	call writediagfi(ngrid,"rneb_man","H2O cloud fraction (conv)"," ",3,rneb_man)
	2102	call writediagfi(ngrid,"rneb_lsc","H2O cloud fraction (large scale)"," ",3,rneb_lsc)
	2103	call writediagfi(ngrid,"CLF","H2O cloud fraction"," ",3,cloudfrac)
	2104	call writediagfi(ngrid,"CLFt","H2O column cloud fraction"," ",2,totcloudfrac)
[1524]	2105	call writediagfi(ngrid,"RH","relative humidity"," ",3,RH)
[1477]	2106	endif
[253]	2107
[1477]	2108	if(waterrain)then
	2109	call writediagfi(ngrid,"rain","rainfall","kg m-2 s-1",2,zdqsrain)
	2110	call writediagfi(ngrid,"snow","snowfall","kg m-2 s-1",2,zdqssnow)
[1859]	2111	call writediagfi(ngrid,"reevap","reevaporation of precipitation","kg m-2 s-1",2,reevap_precip)
[1477]	2112	endif
[253]	2113
[1477]	2114	if((hydrology).and.(.not.ok_slab_ocean))then
	2115	call writediagfi(ngrid,"hice","oceanic ice height","m",2,hice)
	2116	endif
[253]	2117
[1477]	2118	if(ice_update)then
	2119	call writediagfi(ngrid,"ice_min","min annual ice","m",2,ice_min)
	2120	call writediagfi(ngrid,"ice_ini","initial annual ice","m",2,ice_initial)
	2121	endif
[253]	2122
[1477]	2123	do ig=1,ngrid
	2124	if(tau_col(ig).gt.1.e3)then
	2125	print*,'WARNING: tau_col=',tau_col(ig)
	2126	print*,'at ig=',ig,'in PHYSIQ'
	2127	endif
	2128	end do
[253]	2129
[1477]	2130	call writediagfi(ngrid,"tau_col","Total aerosol optical depth","[]",2,tau_col)
[253]	2131
[1477]	2132	enddo ! end of 'nq' loop
	2133
	2134	endif ! end of 'tracer'
[253]	2135
[1477]	2136
	2137	! Output spectrum.
[526]	2138	if(specOLR.and.corrk)then
[728]	2139	call writediagspecIR(ngrid,"OLR3D","OLR(lon,lat,band)","W/m^2/cm^-1",3,OLR_nu)
	2140	call writediagspecVI(ngrid,"OSR3D","OSR(lon,lat,band)","W/m^2/cm^-1",3,OSR_nu)
[526]	2141	endif
[253]	2142
[1836]	2143	#else
	2144	comm_HR_SW(1:ngrid,1:nlayer) = zdtsw(1:ngrid,1:nlayer)
	2145	comm_HR_LW(1:ngrid,1:nlayer) = zdtlw(1:ngrid,1:nlayer)
	2146	comm_CLOUDFRAC(1:ngrid,1:nlayer)=cloudfrac(1:ngrid,1:nlayer)
	2147	comm_TOTCLOUDFRAC(1:ngrid)=totcloudfrac(1:ngrid)
	2148	comm_RAIN(1:ngrid,1:nlayer)=zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap)
	2149	comm_SNOW(1:ngrid,1:nlayer)=zdqrain(1:ngrid,1:nlayer,igcm_h2o_ice)
	2150	comm_ALBEQ(1:ngrid)=albedo_equivalent(1:ngrid)
	2151	comm_FLUXTOP_DN(1:ngrid)=fluxtop_dn(1:ngrid)
	2152	comm_FLUXABS_SW(1:ngrid)=fluxabs_sw(1:ngrid)
	2153	comm_FLUXTOP_LW(1:ngrid)=fluxtop_lw(1:ngrid)
	2154	comm_FLUXSURF_SW(1:ngrid)=fluxsurf_sw(1:ngrid)
	2155	comm_FLUXSURF_LW(1:ngrid)=fluxsurf_lw(1:ngrid)
	2156	comm_FLXGRD(1:ngrid)=fluxgrd(1:ngrid)
	2157	comm_LSCEZ(1:ngrid,1:nlayer)=lscaledEz(1:ngrid,1:nlayer)
	2158	comm_H2OICE_REFF(1:ngrid,1:nlayer)=reffrad(1:ngrid,1:nlayer,iaero_h2o)
	2159	sensibFlux(1:ngrid) = zflubid(1:ngrid) - capcal(1:ngrid)*zdtsdif(1:ngrid) !!! ????
	2160	#endif
	2161
[1622]	2162	! XIOS outputs
	2163	#ifdef CPP_XIOS
	2164	! Send fields to XIOS: (NB these fields must also be defined as
	2165	! <field id="..." /> in context_lmdz_physics.xml to be correctly used)
[1626]	2166	CALL send_xios_field("ls",zls)
	2167
[1622]	2168	CALL send_xios_field("ps",ps)
	2169	CALL send_xios_field("area",cell_area)
	2170
	2171	CALL send_xios_field("temperature",zt)
	2172	CALL send_xios_field("u",zu)
	2173	CALL send_xios_field("v",zv)
[1682]	2174
	2175	if (lastcall.and.is_omp_master) then
	2176	write(,) "physiq: call xios_context_finalize"
	2177	call xios_context_finalize
	2178	endif
[1622]	2179	#endif
	2180
[253]	2181	icount=icount+1
	2182
[751]	2183	end subroutine physiq
[1549]	2184
	2185	end module physiq_mod

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