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physiq_mod.F90 @ 1877

Last change on this file since 1877 was 1877, checked in by aslmd, 7 years ago
addition of the omega velocity in physiq_mod (awaiting improvements by JL)
Property svn:executable set to ``*
File size: 91.9 KB

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1	module physiq_mod
2
3	implicit none
4
5	contains
6
7	subroutine physiq(ngrid,nlayer,nq, &
8	nametrac, &
9	firstcall,lastcall, &
10	pday,ptime,ptimestep, &
11	pplev,pplay,pphi, &
12	pu,pv,pt,pq, &
13	flxw, &
14	pdu,pdv,pdt,pdq,pdpsrf)
15
16	use radinc_h, only : L_NSPECTI,L_NSPECTV,naerkind
17	use watercommon_h, only : RLVTT, Psat_water,epsi
18	use gases_h, only: gnom, gfrac
19	use radcommon_h, only: sigma, glat, grav, BWNV
20	use radii_mod, only: h2o_reffrad, co2_reffrad
21	use aerosol_mod, only: iaero_co2, iaero_h2o
22	use surfdat_h, only: phisfi, zmea, zstd, zsig, zgam, zthe, &
23	dryness, watercaptag
24	use comdiurn_h, only: coslat, sinlat, coslon, sinlon
25	use comsaison_h, only: mu0, fract, dist_star, declin, right_ascen
26	use comsoil_h, only: nsoilmx, layer, mlayer, inertiedat
27	use geometry_mod, only: latitude, longitude, cell_area
28	USE comgeomfi_h, only: totarea, totarea_planet
29	USE tracer_h, only: noms, mmol, radius, rho_q, qext, &
30	alpha_lift, alpha_devil, qextrhor, &
31	igcm_h2o_ice, igcm_h2o_vap, igcm_dustbin, &
32	igcm_co2_ice
33	use time_phylmdz_mod, only: ecritphy, iphysiq, nday
34	use phyetat0_mod, only: phyetat0
35	use phyredem, only: physdem0, physdem1
36	use slab_ice_h, only: capcalocean, capcalseaice,capcalsno, &
37	noceanmx
38	use ocean_slab_mod, only :ocean_slab_init, ocean_slab_ice, &
39	ini_surf_heat_transp_mod, &
40	ocean_slab_get_vars,ocean_slab_final
41	use surf_heat_transp_mod,only :init_masquv
42	use planetwide_mod, only: planetwide_minval,planetwide_maxval,planetwide_sumval
43	use mod_phys_lmdz_para, only : is_master
44	use planete_mod, only: apoastr, periastr, year_day, peri_day, &
45	obliquit, nres, z0
46	use comcstfi_mod, only: pi, g, rcp, r, rad, mugaz, cpp
47	use time_phylmdz_mod, only: daysec
48	use callkeys_mod
49	use conc_mod
50	use phys_state_var_mod
51	use turb_mod, only : q2,sensibFlux,turb_resolved
52	#ifndef MESOSCALE
53	use vertical_layers_mod, only: presnivs, pseudoalt
54	use mod_phys_lmdz_omp_data, ONLY: is_omp_master
55	#else
56	use comm_wrf, only : comm_HR_SW, comm_HR_LW, &
57	comm_CLOUDFRAC,comm_TOTCLOUDFRAC,&
58	comm_RAIN,comm_SNOW,comm_ALBEQ,&
59	comm_FLUXTOP_DN,comm_FLUXABS_SW,&
60	comm_FLUXTOP_LW,comm_FLUXSURF_SW,&
61	comm_FLUXSURF_LW,comm_FLXGRD,&
62	comm_LSCEZ,comm_H2OICE_REFF
63	#endif
64
65	#ifdef CPP_XIOS
66	use xios_output_mod, only: initialize_xios_output, &
67	update_xios_timestep, &
68	send_xios_field
69	use wxios, only: wxios_context_init, xios_context_finalize
70	#endif
71
72	implicit none
73
74
75	!==================================================================
76	!
77	! Purpose
78	! -------
79	! Central subroutine for all the physics parameterisations in the
80	! universal model. Originally adapted from the Mars LMDZ model.
81	!
82	! The model can be run without or with tracer transport
83	! depending on the value of "tracer" in file "callphys.def".
84	!
85	!
86	! It includes:
87	!
88	! I. Initialization :
89	! I.1 Firstcall initializations.
90	! I.2 Initialization for every call to physiq.
91	!
92	! II. Compute radiative transfer tendencies (longwave and shortwave) :
93	! II.a Option 1 : Call correlated-k radiative transfer scheme.
94	! II.b Option 2 : Call Newtonian cooling scheme.
95	! II.c Option 3 : Atmosphere has no radiative effect.
96	!
97	! III. Vertical diffusion (turbulent mixing) :
98	!
99	! IV. Dry Convective adjustment :
100	!
101	! V. Condensation and sublimation of gases (currently just CO2).
102	!
103	! VI. Tracers
104	! VI.1. Water and water ice.
105	! VI.2 Photochemistry
106	! VI.3. Aerosols and particles.
107	! VI.4. Updates (pressure variations, surface budget).
108	! VI.5. Slab Ocean.
109	! VI.6. Surface Tracer Update.
110	!
111	! VII. Surface and sub-surface soil temperature.
112	!
113	! VIII. Perform diagnostics and write output files.
114	!
115	!
116	! arguments
117	! ---------
118	!
119	! INPUT
120	! -----
121	!
122	! ngrid Size of the horizontal grid.
123	! nlayer Number of vertical layers.
124	! nq Number of advected fields.
125	! nametrac Name of corresponding advected fields.
126	!
127	! firstcall True at the first call.
128	! lastcall True at the last call.
129	!
130	! pday Number of days counted from the North. Spring equinoxe.
131	! ptime Universal time (0<ptime<1): ptime=0.5 at 12:00 UT.
132	! ptimestep timestep (s).
133	!
134	! pplay(ngrid,nlayer) Pressure at the middle of the layers (Pa).
135	! pplev(ngrid,nlayer+1) Intermediate pressure levels (Pa).
136	! pphi(ngrid,nlayer) Geopotential at the middle of the layers (m2.s-2).
137	!
138	! pu(ngrid,nlayer) u, zonal component of the wind (ms-1).
139	! pv(ngrid,nlayer) v, meridional component of the wind (ms-1).
140	!
141	! pt(ngrid,nlayer) Temperature (K).
142	!
143	! pq(ngrid,nlayer,nq) Advected fields.
144	!
145	! pudyn(ngrid,nlayer) \
146	! pvdyn(ngrid,nlayer) \ Dynamical temporal derivative for the
147	! ptdyn(ngrid,nlayer) / corresponding variables.
148	! pqdyn(ngrid,nlayer,nq) /
149	! flxw(ngrid,nlayer) vertical mass flux (kg/s) at layer lower boundary
150	!
151	! OUTPUT
152	! ------
153	!
154	! pdu(ngrid,nlayer) \
155	! pdv(ngrid,nlayer) \ Temporal derivative of the corresponding
156	! pdt(ngrid,nlayer) / variables due to physical processes.
157	! pdq(ngrid,nlayer) /
158	! pdpsrf(ngrid) /
159	!
160	!
161	! Authors
162	! -------
163	! Frederic Hourdin 15/10/93
164	! Francois Forget 1994
165	! Christophe Hourdin 02/1997
166	! Subroutine completely rewritten by F. Forget (01/2000)
167	! Water ice clouds: Franck Montmessin (update 06/2003)
168	! Radiatively active tracers: J.-B. Madeleine (10/2008-06/2009)
169	! New correlated-k radiative scheme: R. Wordsworth (2009)
170	! Many specifically Martian subroutines removed: R. Wordsworth (2009)
171	! Improved water cycle: R. Wordsworth / B. Charnay (2010)
172	! To F90: R. Wordsworth (2010)
173	! New turbulent diffusion scheme: J. Leconte (2012)
174	! Loops converted to F90 matrix format: J. Leconte (2012)
175	! No more ngridmx/nqmx, F90 commons and adaptation to parallel: A. Spiga (2012)
176	! Purge of the code : M. Turbet (2015)
177	! Photochemical core developped by F. Lefevre: B. Charnay (2017)
178	!==================================================================
179
180
181	! 0. Declarations :
182	! ------------------
183
184	include "netcdf.inc"
185
186	! Arguments :
187	! -----------
188
189	! INPUTS:
190	! -------
191
192	integer,intent(in) :: ngrid ! Number of atmospheric columns.
193	integer,intent(in) :: nlayer ! Number of atmospheric layers.
194	integer,intent(in) :: nq ! Number of tracers.
195	character*20,intent(in) :: nametrac(nq) ! Names of the tracers taken from dynamics.
196
197	logical,intent(in) :: firstcall ! Signals first call to physics.
198	logical,intent(in) :: lastcall ! Signals last call to physics.
199
200	real,intent(in) :: pday ! Number of elapsed sols since reference Ls=0.
201	real,intent(in) :: ptime ! "Universal time", given as fraction of sol (e.g.: 0.5 for noon).
202	real,intent(in) :: ptimestep ! Physics timestep (s).
203	real,intent(in) :: pplev(ngrid,nlayer+1) ! Inter-layer pressure (Pa).
204	real,intent(in) :: pplay(ngrid,nlayer) ! Mid-layer pressure (Pa).
205	real,intent(in) :: pphi(ngrid,nlayer) ! Geopotential at mid-layer (m2s-2).
206	real,intent(in) :: pu(ngrid,nlayer) ! Zonal wind component (m/s).
207	real,intent(in) :: pv(ngrid,nlayer) ! Meridional wind component (m/s).
208	real,intent(in) :: pt(ngrid,nlayer) ! Temperature (K).
209	real,intent(in) :: pq(ngrid,nlayer,nq) ! Tracers (kg/kg_of_air).
210	real,intent(in) :: flxw(ngrid,nlayer) ! Vertical mass flux (ks/s) at lower boundary of layer
211
212	! OUTPUTS:
213	! --------
214
215	! Physical tendencies :
216
217	real,intent(out) :: pdu(ngrid,nlayer) ! Zonal wind tendencies (m/s/s).
218	real,intent(out) :: pdv(ngrid,nlayer) ! Meridional wind tendencies (m/s/s).
219	real,intent(out) :: pdt(ngrid,nlayer) ! Temperature tendencies (K/s).
220	real,intent(out) :: pdq(ngrid,nlayer,nq) ! Tracer tendencies (kg/kg_of_air/s).
221	real,intent(out) :: pdpsrf(ngrid) ! Surface pressure tendency (Pa/s).
222
223	! Local saved variables:
224	! ----------------------
225	integer,save :: day_ini ! Initial date of the run (sol since Ls=0).
226	integer,save :: icount ! Counter of calls to physiq during the run.
227	!$OMP THREADPRIVATE(day_ini,icount)
228
229	! Local variables :
230	! -----------------
231
232	! Aerosol (dust or ice) extinction optical depth at reference wavelength
233	! for the "naerkind" optically active aerosols:
234
235	real aerosol(ngrid,nlayer,naerkind) ! Aerosols.
236	real zh(ngrid,nlayer) ! Potential temperature (K).
237	real pw(ngrid,nlayer) ! Vertical velocity (m/s). (NOTE : >0 WHEN DOWNWARDS !!)
238	real omega(ngrid,nlayer) ! omega velocity (Pa/s, >0 when downward)
239
240	integer l,ig,ierr,iq,nw,isoil
241
242	real zls ! Solar longitude (radians).
243	real zlss ! Sub solar point longitude (radians).
244	real zday ! Date (time since Ls=0, calculated in sols).
245	real zzlay(ngrid,nlayer) ! Altitude at the middle of the atmospheric layers.
246	real zzlev(ngrid,nlayer+1) ! Altitude at the atmospheric layer boundaries.
247
248	! TENDENCIES due to various processes :
249
250	! For Surface Temperature : (K/s)
251	real zdtsurf(ngrid) ! Cumulated tendencies.
252	real zdtsurfmr(ngrid) ! Mass_redistribution routine.
253	real zdtsurfc(ngrid) ! Condense_co2 routine.
254	real zdtsdif(ngrid) ! Turbdiff/vdifc routines.
255	real zdtsurf_hyd(ngrid) ! Hydrol routine.
256
257	! For Atmospheric Temperatures : (K/s)
258	real dtlscale(ngrid,nlayer) ! Largescale routine.
259	real zdtc(ngrid,nlayer) ! Condense_co2 routine.
260	real zdtdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
261	real zdtmr(ngrid,nlayer) ! Mass_redistribution routine.
262	real zdtrain(ngrid,nlayer) ! Rain routine.
263	real dtmoist(ngrid,nlayer) ! Moistadj routine.
264	real dt_ekman(ngrid,noceanmx), dt_hdiff(ngrid,noceanmx) ! Slab_ocean routine.
265	real zdtsw1(ngrid,nlayer), zdtlw1(ngrid,nlayer) ! Callcorrk routine.
266
267	! For Surface Tracers : (kg/m2/s)
268	real dqsurf(ngrid,nq) ! Cumulated tendencies.
269	real zdqsurfc(ngrid) ! Condense_co2 routine.
270	real zdqsdif(ngrid,nq) ! Turbdiff/vdifc routines.
271	real zdqssed(ngrid,nq) ! Callsedim routine.
272	real zdqsurfmr(ngrid,nq) ! Mass_redistribution routine.
273	real zdqsrain(ngrid), zdqssnow(ngrid) ! Rain routine.
274	real dqs_hyd(ngrid,nq) ! Hydrol routine.
275	real reevap_precip(ngrid) ! re-evaporation flux of precipitation (integrated over the atmospheric column)
276
277	! For Tracers : (kg/kg_of_air/s)
278	real zdqc(ngrid,nlayer,nq) ! Condense_co2 routine.
279	real zdqadj(ngrid,nlayer,nq) ! Convadj routine.
280	real zdqdif(ngrid,nlayer,nq) ! Turbdiff/vdifc routines.
281	real zdqevap(ngrid,nlayer) ! Turbdiff routine.
282	real zdqsed(ngrid,nlayer,nq) ! Callsedim routine.
283	real zdqmr(ngrid,nlayer,nq) ! Mass_redistribution routine.
284	real zdqrain(ngrid,nlayer,nq) ! Rain routine.
285	real dqmoist(ngrid,nlayer,nq) ! Moistadj routine.
286	real dqvaplscale(ngrid,nlayer) ! Largescale routine.
287	real dqcldlscale(ngrid,nlayer) ! Largescale routine.
288	REAL zdqchim(ngrid,nlayer,nq) ! Calchim_asis routine
289	REAL zdqschim(ngrid,nq) ! Calchim_asis routine
290
291	REAL array_zero1(ngrid)
292	REAL array_zero2(ngrid,nlayer)
293
294	! For Winds : (m/s/s)
295	real zdvadj(ngrid,nlayer),zduadj(ngrid,nlayer) ! Convadj routine.
296	real zdumr(ngrid,nlayer),zdvmr(ngrid,nlayer) ! Mass_redistribution routine.
297	real zdvdif(ngrid,nlayer),zdudif(ngrid,nlayer) ! Turbdiff/vdifc routines.
298	real zdhdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
299	real zdhadj(ngrid,nlayer) ! Convadj routine.
300
301	! For Pressure and Mass :
302	real zdmassmr(ngrid,nlayer) ! Atmospheric Mass tendency for mass_redistribution (kg_of_air/m2/s).
303	real zdmassmr_col(ngrid) ! Atmospheric Column Mass tendency for mass_redistribution (kg_of_air/m2/s).
304	real zdpsrfmr(ngrid) ! Pressure tendency for mass_redistribution routine (Pa/s).
305
306
307
308	! Local variables for LOCAL CALCULATIONS:
309	! ---------------------------------------
310	real zflubid(ngrid)
311	real zplanck(ngrid),zpopsk(ngrid,nlayer)
312	real ztim1,ztim2,ztim3, z1,z2
313	real ztime_fin
314	real zdh(ngrid,nlayer)
315	real gmplanet
316	real taux(ngrid),tauy(ngrid)
317
318
319	! local variables for DIAGNOSTICS : (diagfi & stat)
320	! -------------------------------------------------
321	real ps(ngrid) ! Surface Pressure.
322	real zt(ngrid,nlayer) ! Atmospheric Temperature.
323	real zu(ngrid,nlayer),zv(ngrid,nlayer) ! Zonal and Meridional Winds.
324	real zq(ngrid,nlayer,nq) ! Atmospheric Tracers.
325	real zdtadj(ngrid,nlayer) ! Convadj Diagnostic.
326	real zdtdyn(ngrid,nlayer) ! Dynamical Heating (K/s).
327	real zdudyn(ngrid,nlayer) ! Dynamical Zonal Wind tendency (m.s-2).
328
329	real reff(ngrid,nlayer) ! Effective dust radius (used if doubleq=T).
330	real vmr(ngrid,nlayer) ! volume mixing ratio
331	real time_phys
332
333	real ISR,ASR,OLR,GND,DYN,GSR,Ts1,Ts2,Ts3,TsS ! for Diagnostic.
334
335	real qcol(ngrid,nq) ! Tracer Column Mass (kg/m2).
336
337	! included by RW for H2O Manabe scheme
338	real rneb_man(ngrid,nlayer) ! H2O cloud fraction (moistadj).
339	real rneb_lsc(ngrid,nlayer) ! H2O cloud fraction (large scale).
340
341
342	! to test energy conservation (RW+JL)
343	real mass(ngrid,nlayer),massarea(ngrid,nlayer)
344	real dEtot, dEtots, AtmToSurf_TurbFlux
345	real,save :: dEtotSW, dEtotsSW, dEtotLW, dEtotsLW
346	!$OMP THREADPRIVATE(dEtotSW, dEtotsSW, dEtotLW, dEtotsLW)
347	real dEzRadsw(ngrid,nlayer),dEzRadlw(ngrid,nlayer),dEzdiff(ngrid,nlayer)
348	real dEdiffs(ngrid),dEdiff(ngrid)
349	real madjdE(ngrid), lscaledE(ngrid),madjdEz(ngrid,nlayer), lscaledEz(ngrid,nlayer)
350
351	!JL12 conservation test for mean flow kinetic energy has been disabled temporarily
352
353	real dtmoist_max,dtmoist_min
354	real dItot, dItot_tmp, dVtot, dVtot_tmp
355
356
357	real h2otot ! Total Amount of water. For diagnostic.
358	real icesrf,liqsrf,icecol,vapcol ! Total Amounts of water (ice,liq,vap). For diagnostic.
359	real dWtot, dWtot_tmp, dWtots, dWtots_tmp
360	logical,save :: watertest
361	!$OMP THREADPRIVATE(watertest)
362
363	real qsat(ngrid,nlayer) ! Water Vapor Volume Mixing Ratio at saturation (kg/kg_of_air).
364	real RH(ngrid,nlayer) ! Relative humidity.
365	real H2Omaxcol(ngrid) ! Maximum possible H2O column amount (at 100% saturation) (kg/m2).
366	real psat_tmp
367
368	logical clearsky ! For double radiative transfer call. By BC
369
370	! For Clear Sky Case.
371	real fluxsurf_lw1(ngrid), fluxsurf_sw1(ngrid), fluxsurfabs_sw1(ngrid) ! For SW/LW flux.
372	real fluxtop_lw1(ngrid), fluxabs_sw1(ngrid) ! For SW/LW flux.
373	real albedo_equivalent1(ngrid) ! For Equivalent albedo calculation.
374	real tau_col1(ngrid) ! For aerosol optical depth diagnostic.
375	real OLR_nu1(ngrid,L_NSPECTI), OSR_nu1(ngrid,L_NSPECTV) ! For Outgoing Radiation diagnostics.
376	real tf, ntf
377
378	real nconsMAX, vdifcncons(ngrid), cadjncons(ngrid) ! Vdfic water conservation test. By RW
379
380	real muvar(ngrid,nlayer+1) ! For Runaway Greenhouse 1D study. By RW
381
382	real reffcol(ngrid,naerkind)
383
384	! Sourceevol for 'accelerated ice evolution'. By RW
385	real delta_ice,ice_tot
386	integer num_run
387	logical,save :: ice_update
388
389
390	real :: tsurf2(ngrid)
391	real :: flux_o(ngrid),flux_g(ngrid),fluxgrdocean(ngrid)
392	real :: flux_sens_lat(ngrid)
393	real :: qsurfint(ngrid,nq)
394
395
396	!==================================================================================================
397
398	! -----------------
399	! I. INITIALISATION
400	! -----------------
401
402	! --------------------------------
403	! I.1 First Call Initialisation.
404	! --------------------------------
405	if (firstcall) then
406	! Allocate saved arrays.
407	call phys_state_var_init(nq)
408
409	! Variables set to 0
410	! ~~~~~~~~~~~~~~~~~~
411	dtrad(:,:) = 0.0
412	fluxrad(:) = 0.0
413	tau_col(:) = 0.0
414	zdtsw(:,:) = 0.0
415	zdtlw(:,:) = 0.0
416
417
418	! Initialize aerosol indexes.
419	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~
420	call iniaerosol()
421
422
423	! Initialize tracer names, indexes and properties.
424	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
425	IF (.NOT.ALLOCATED(noms)) ALLOCATE(noms(nq)) ! (because noms is an argument of physdem1 whether or not tracer is on)
426	if (tracer) then
427	call initracer(ngrid,nq,nametrac)
428	if(photochem) then
429	call ini_conc_mod(ngrid,nlayer)
430	endif
431	endif
432
433	#ifdef CPP_XIOS
434	! Initialize XIOS context
435	write(,) "physiq: call wxios_context_init"
436	CALL wxios_context_init
437	#endif
438
439	! Read 'startfi.nc' file.
440	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441	#ifndef MESOSCALE
442	call phyetat0(startphy_file, &
443	ngrid,nlayer,"startfi.nc",0,0,nsoilmx,nq, &
444	day_ini,time_phys,tsurf,tsoil,emis,q2,qsurf, &
445	cloudfrac,totcloudfrac,hice, &
446	rnat,pctsrf_sic,tslab, tsea_ice,sea_ice)
447	#else
448	emis(:)=0.0
449	q2(:,:)=0.0
450	qsurf(:,:)=0.0
451	day_ini = pday
452	#endif
453
454	#ifndef MESOSCALE
455	if (.not.startphy_file) then
456	! additionnal "academic" initialization of physics
457	if (is_master) write(,) "Physiq: initializing tsurf(:) to pt(:,1) !!"
458	tsurf(:)=pt(:,1)
459	if (is_master) write(,) "Physiq: initializing tsoil(:) to pt(:,1) !!"
460	do isoil=1,nsoilmx
461	tsoil(1:ngrid,isoil)=tsurf(1:ngrid)
462	enddo
463	if (is_master) write(,) "Physiq: initializing day_ini to pdat !"
464	day_ini=pday
465	endif
466	#endif
467
468	if (pday.ne.day_ini) then
469	write(,) "ERROR in physiq.F90:"
470	write(,) "bad synchronization between physics and dynamics"
471	write(,) "dynamics day: ",pday
472	write(,) "physics day: ",day_ini
473	stop
474	endif
475
476	write (,) 'In physiq day_ini =', day_ini
477
478	! Initialize albedo calculation.
479	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
480	albedo(:,:)=0.0
481	albedo_bareground(:)=0.0
482	albedo_snow_SPECTV(:)=0.0
483	albedo_co2_ice_SPECTV(:)=0.0
484	call surfini(ngrid,nq,qsurf,albedo,albedo_bareground,albedo_snow_SPECTV,albedo_co2_ice_SPECTV)
485
486	! Initialize orbital calculation.
487	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
488	call iniorbit(apoastr,periastr,year_day,peri_day,obliquit)
489
490
491	if(tlocked)then
492	print*,'Planet is tidally locked at resonance n=',nres
493	print*,'Make sure you have the right rotation rate!!!'
494	endif
495
496	! Initialize oceanic variables.
497	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
498
499	if (ok_slab_ocean)then
500
501	call ocean_slab_init(ngrid,ptimestep, tslab, &
502	sea_ice, pctsrf_sic)
503
504	call ini_surf_heat_transp_mod()
505
506	knindex(:) = 0
507
508	do ig=1,ngrid
509	zmasq(ig)=1
510	knindex(ig) = ig
511	if (nint(rnat(ig)).eq.0) then
512	zmasq(ig)=0
513	endif
514	enddo
515
516	CALL init_masquv(ngrid,zmasq)
517
518	endif ! end of 'ok_slab_ocean'.
519
520
521	! Initialize soil.
522	! ~~~~~~~~~~~~~~~~
523	if (callsoil) then
524
525	call soil(ngrid,nsoilmx,firstcall,lastcall,inertiedat, &
526	ptimestep,tsurf,tsoil,capcal,fluxgrd)
527
528	if (ok_slab_ocean) then
529	do ig=1,ngrid
530	if (nint(rnat(ig)).eq.2) then
531	capcal(ig)=capcalocean
532	if (pctsrf_sic(ig).gt.0.5) then
533	capcal(ig)=capcalseaice
534	if (qsurf(ig,igcm_h2o_ice).gt.0.) then
535	capcal(ig)=capcalsno
536	endif
537	endif
538	endif
539	enddo
540	endif ! end of 'ok_slab_ocean'.
541
542	else ! else of 'callsoil'.
543
544	print*,'WARNING! Thermal conduction in the soil turned off'
545	capcal(:)=1.e6
546	fluxgrd(:)=intheat
547	print*,'Flux from ground = ',intheat,' W m^-2'
548
549	endif ! end of 'callsoil'.
550
551	icount=1
552
553	! Decide whether to update ice at end of run.
554	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
555	ice_update=.false.
556	if(sourceevol)then
557	!$OMP MASTER
558	open(128,file='num_run',form='formatted', &
559	status="old",iostat=ierr)
560	if (ierr.ne.0) then
561	write(,) "physiq: Error! No num_run file!"
562	write(,) " (which is needed for sourceevol option)"
563	stop
564	endif
565	read(128,*) num_run
566	close(128)
567	!$OMP END MASTER
568	!$OMP BARRIER
569
570	if(num_run.ne.0.and.mod(num_run,2).eq.0)then
571	print*,'Updating ice at end of this year!'
572	ice_update=.true.
573	ice_min(:)=1.e4
574	endif
575
576	endif ! end of 'sourceevol'.
577
578
579	! Here is defined the type of the surface : Continent or Ocean.
580	! BC2014 : This is now already done in newstart.
581	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
582	if (.not.ok_slab_ocean) then
583
584	rnat(:)=1.
585	do ig=1,ngrid
586	if(inertiedat(ig,1).gt.1.E4)then
587	rnat(ig)=0
588	endif
589	enddo
590
591	print*,'WARNING! Surface type currently decided by surface inertia'
592	print*,'This should be improved e.g. in newstart.F'
593
594	endif ! end of 'ok_slab_ocean'.
595
596
597	! Initialize surface history variable.
598	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
599	qsurf_hist(:,:)=qsurf(:,:)
600
601	! Initialize variable for dynamical heating and zonal wind tendency diagnostic
602	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
603	ztprevious(:,:)=pt(:,:)
604	zuprevious(:,:)=pu(:,:)
605
606	! Set temperature just above condensation temperature (for Early Mars)
607	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
608	if(nearco2cond) then
609	write(,)' WARNING! Starting at Tcond+1K'
610	do l=1, nlayer
611	do ig=1,ngrid
612	pdt(ig,l)= ((-3167.8)/(log(.01*pplay(ig,l))-23.23)+4 &
613	-pt(ig,l)) / ptimestep
614	enddo
615	enddo
616	endif
617
618	if(meanOLR)then
619	call system('rm -f rad_bal.out') ! to record global radiative balance.
620	call system('rm -f tem_bal.out') ! to record global mean/max/min temperatures.
621	call system('rm -f h2o_bal.out') ! to record global hydrological balance.
622	endif
623
624
625	watertest=.false.
626	if(water)then ! Initialize variables for water cycle
627
628	if(enertest)then
629	watertest = .true.
630	endif
631
632	if(ice_update)then
633	ice_initial(:)=qsurf(:,igcm_h2o_ice)
634	endif
635
636	endif
637
638	call su_watercycle ! even if we don't have a water cycle, we might
639	! need epsi for the wvp definitions in callcorrk.F
640	#ifndef MESOSCALE
641	if (ngrid.ne.1) then ! Note : no need to create a restart file in 1d.
642	call physdem0("restartfi.nc",longitude,latitude,nsoilmx,ngrid,nlayer,nq, &
643	ptimestep,pday+nday,time_phys,cell_area, &
644	albedo_bareground,inertiedat,zmea,zstd,zsig,zgam,zthe)
645	endif
646	#endif
647
648	! XIOS outputs
649	#ifdef CPP_XIOS
650
651	write(,) "physiq: call initialize_xios_output"
652	call initialize_xios_output(pday,ptime,ptimestep,daysec, &
653	presnivs,pseudoalt)
654	#endif
655	write(,) "physiq: end of firstcall"
656	endif ! end of 'firstcall'
657
658	! ------------------------------------------------------
659	! I.2 Initializations done at every physical timestep:
660	! ------------------------------------------------------
661
662	#ifdef CPP_XIOS
663	! update XIOS time/calendar
664	call update_xios_timestep
665	#endif
666
667	! Initialize various variables
668	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
669
670	if ( .not.nearco2cond ) then
671	pdt(1:ngrid,1:nlayer) = 0.0
672	endif
673	zdtsurf(1:ngrid) = 0.0
674	pdq(1:ngrid,1:nlayer,1:nq) = 0.0
675	dqsurf(1:ngrid,1:nq)= 0.0
676	pdu(1:ngrid,1:nlayer) = 0.0
677	pdv(1:ngrid,1:nlayer) = 0.0
678	pdpsrf(1:ngrid) = 0.0
679	zflubid(1:ngrid) = 0.0
680	flux_sens_lat(1:ngrid) = 0.0
681	taux(1:ngrid) = 0.0
682	tauy(1:ngrid) = 0.0
683
684	zday=pday+ptime ! Compute time, in sols (and fraction thereof).
685
686	! Compute Stellar Longitude (Ls), and orbital parameters.
687	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
688	if (season) then
689	call stellarlong(zday,zls)
690	else
691	call stellarlong(float(day_ini),zls)
692	end if
693
694	call orbite(zls,dist_star,declin,right_ascen)
695
696	if (tlocked) then
697	zlss=Mod(-(2.pi(zday/year_day)nres - right_ascen),2.pi)
698	elseif (diurnal) then
699	zlss=-2.pi(zday-.5)
700	else if(diurnal .eqv. .false.) then
701	zlss=9999.
702	endif
703
704
705	! Compute variations of g with latitude (oblate case).
706	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
707	if (oblate .eqv. .false.) then
708	glat(:) = g
709	else if (flatten .eq. 0.0 .or. J2 .eq. 0.0 .or. Rmean .eq. 0.0 .or. MassPlanet .eq. 0.0) then
710	print*,'I need values for flatten, J2, Rmean and MassPlanet to compute glat (else set oblate=.false.)'
711	call abort
712	else
713	gmplanet = MassPlanetgrav1e24
714	do ig=1,ngrid
715	glat(ig)= gmplanet/(Rmean*2) (1.D0 + 0.75 J2 - 2.0flatten/3. + (2.flatten - 15./4. J2) * cos(2. * (pi/2. - latitude(ig))))
716	end do
717	endif
718
719	! Compute geopotential between layers.
720	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
721	zzlay(1:ngrid,1:nlayer)=pphi(1:ngrid,1:nlayer)
722	do l=1,nlayer
723	zzlay(1:ngrid,l)= zzlay(1:ngrid,l)/glat(1:ngrid)
724	enddo
725
726	zzlev(1:ngrid,1)=0.
727	zzlev(1:ngrid,nlayer+1)=1.e7 ! Dummy top of last layer above 10000 km...
728
729	do l=2,nlayer
730	do ig=1,ngrid
731	z1=(pplay(ig,l-1)+pplev(ig,l))/(pplay(ig,l-1)-pplev(ig,l))
732	z2=(pplev(ig,l)+pplay(ig,l))/(pplev(ig,l)-pplay(ig,l))
733	zzlev(ig,l)=(z1zzlay(ig,l-1)+z2zzlay(ig,l))/(z1+z2)
734	enddo
735	enddo
736
737	! Compute potential temperature
738	! Note : Potential temperature calculation may not be the same in physiq and dynamic...
739	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
740	do l=1,nlayer
741	do ig=1,ngrid
742	zpopsk(ig,l)=(pplay(ig,l)/pplev(ig,1))**rcp
743	zh(ig,l)=pt(ig,l)/zpopsk(ig,l)
744	mass(ig,l) = (pplev(ig,l) - pplev(ig,l+1))/glat(ig)
745	massarea(ig,l)=mass(ig,l)*cell_area(ig)
746	enddo
747	enddo
748
749	! Compute vertical velocity (m/s) from vertical mass flux
750	! w = F / (rhoarea) and rho = P/(rT)
751	! But first linearly interpolate mass flux to mid-layers
752	do l=1,nlayer-1
753	pw(1:ngrid,l)=0.5*(flxw(1:ngrid,l)+flxw(1:ngrid,l+1))
754	enddo
755	pw(1:ngrid,nlayer)=0.5*flxw(1:ngrid,nlayer) ! since flxw(nlayer+1)=0
756	do l=1,nlayer
757	pw(1:ngrid,l)=(pw(1:ngrid,l)rpt(1:ngrid,l)) / &
758	(pplay(1:ngrid,l)*cell_area(1:ngrid))
759	enddo
760	! omega in Pa/s
761	do l=1,nlayer-1
762	omega(1:ngrid,l)=0.5*(flxw(1:ngrid,l)+flxw(1:ngrid,l+1))
763	enddo
764	omega(1:ngrid,nlayer)=0.5*flxw(1:ngrid,nlayer) ! since flxw(nlayer+1)=0
765	do l=1,nlayer
766	omega(1:ngrid,l)=g*omega(1:ngrid,l)/cell_area(1:ngrid)
767	enddo
768
769	! ----------------------------------------------------------------
770	! Compute mean mass, cp, and R
771	! --------------------------------
772
773	if(photochem) then
774	call concentrations(ngrid,nlayer,nq,pplay,pt,pdt,pq,pdq,ptimestep)
775	endif
776
777	!---------------------------------
778	! II. Compute radiative tendencies
779	!---------------------------------
780
781	if (callrad) then
782	if( mod(icount-1,iradia).eq.0.or.lastcall) then
783
784	! Compute local stellar zenith angles
785	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
786	if (tlocked) then
787	! JL14 corrects tidally resonant (and inclined) cases. nres=omega_rot/omega_orb
788	ztim1=SIN(declin)
789	ztim2=COS(declin)*COS(zlss)
790	ztim3=COS(declin)*SIN(zlss)
791
792	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
793	ztim1,ztim2,ztim3,mu0,fract, flatten)
794
795	elseif (diurnal) then
796	ztim1=SIN(declin)
797	ztim2=COS(declin)COS(2.pi*(zday-.5))
798	ztim3=-COS(declin)SIN(2.pi*(zday-.5))
799
800	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
801	ztim1,ztim2,ztim3,mu0,fract, flatten)
802	else if(diurnal .eqv. .false.) then
803
804	call mucorr(ngrid,declin,latitude,mu0,fract,10000.,rad,flatten)
805	! WARNING: this function appears not to work in 1D
806
807	endif
808
809	! Eclipse incoming sunlight (e.g. Saturn ring shadowing).
810	if(rings_shadow) then
811	call call_rings(ngrid, ptime, pday, diurnal)
812	endif
813
814
815	if (corrk) then
816
817	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
818	! II.a Call correlated-k radiative transfer scheme
819	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
820	if(kastprof)then
821	print*,'kastprof should not = true here'
822	call abort
823	endif
824	if(water) then
825	muvar(1:ngrid,1:nlayer)=mugaz/(1.e0+(1.e0/epsi-1.e0)*pq(1:ngrid,1:nlayer,igcm_h2o_vap))
826	muvar(1:ngrid,nlayer+1)=mugaz/(1.e0+(1.e0/epsi-1.e0)*pq(1:ngrid,nlayer,igcm_h2o_vap))
827	! take into account water effect on mean molecular weight
828	else
829	muvar(1:ngrid,1:nlayer+1)=mugaz
830	endif
831
832
833	if(ok_slab_ocean) then
834	tsurf2(:)=tsurf(:)
835	do ig=1,ngrid
836	if (nint(rnat(ig))==0) then
837	tsurf(ig)=((1.-pctsrf_sic(ig))tslab(ig,1)4+pctsrf_sic(ig)tsea_ice(ig)4)0.25
838	endif
839	enddo
840	endif !(ok_slab_ocean)
841
842	! standard callcorrk
843	clearsky=.false.
844	call callcorrk(ngrid,nlayer,pq,nq,qsurf, &
845	albedo,albedo_equivalent,emis,mu0,pplev,pplay,pt, &
846	tsurf,fract,dist_star,aerosol,muvar, &
847	zdtlw,zdtsw,fluxsurf_lw,fluxsurf_sw, &
848	fluxsurfabs_sw,fluxtop_lw, &
849	fluxabs_sw,fluxtop_dn,OLR_nu,OSR_nu, &
850	tau_col,cloudfrac,totcloudfrac, &
851	clearsky,firstcall,lastcall)
852
853	! Option to call scheme once more for clear regions
854	if(CLFvarying)then
855
856	! ---> PROBLEMS WITH ALLOCATED ARRAYS : temporary solution in callcorrk: do not deallocate if CLFvarying ...
857	clearsky=.true.
858	call callcorrk(ngrid,nlayer,pq,nq,qsurf, &
859	albedo,albedo_equivalent1,emis,mu0,pplev,pplay,pt, &
860	tsurf,fract,dist_star,aerosol,muvar, &
861	zdtlw1,zdtsw1,fluxsurf_lw1,fluxsurf_sw1, &
862	fluxsurfabs_sw1,fluxtop_lw1, &
863	fluxabs_sw1,fluxtop_dn,OLR_nu1,OSR_nu1, &
864	tau_col1,cloudfrac,totcloudfrac, &
865	clearsky,firstcall,lastcall)
866	clearsky = .false. ! just in case.
867
868	! Sum the fluxes and heating rates from cloudy/clear cases
869	do ig=1,ngrid
870	tf=totcloudfrac(ig)
871	ntf=1.-tf
872	fluxsurf_lw(ig) = ntffluxsurf_lw1(ig) + tffluxsurf_lw(ig)
873	fluxsurf_sw(ig) = ntffluxsurf_sw1(ig) + tffluxsurf_sw(ig)
874	albedo_equivalent(ig) = ntfalbedo_equivalent1(ig) + tfalbedo_equivalent(ig)
875	fluxsurfabs_sw(ig) = ntffluxsurfabs_sw1(ig) + tffluxsurfabs_sw(ig)
876	fluxtop_lw(ig) = ntffluxtop_lw1(ig) + tffluxtop_lw(ig)
877	fluxabs_sw(ig) = ntffluxabs_sw1(ig) + tffluxabs_sw(ig)
878	tau_col(ig) = ntftau_col1(ig) + tftau_col(ig)
879
880	zdtlw(ig,1:nlayer) = ntfzdtlw1(ig,1:nlayer) + tfzdtlw(ig,1:nlayer)
881	zdtsw(ig,1:nlayer) = ntfzdtsw1(ig,1:nlayer) + tfzdtsw(ig,1:nlayer)
882
883	OSR_nu(ig,1:L_NSPECTV) = ntfOSR_nu1(ig,1:L_NSPECTV) + tfOSR_nu(ig,1:L_NSPECTV)
884	OLR_nu(ig,1:L_NSPECTI) = ntfOLR_nu1(ig,1:L_NSPECTI) + tfOLR_nu(ig,1:L_NSPECTI)
885	enddo
886
887	endif ! end of CLFvarying.
888
889	if(ok_slab_ocean) then
890	tsurf(:)=tsurf2(:)
891	endif
892
893
894	! Radiative flux from the sky absorbed by the surface (W.m-2).
895	GSR=0.0
896	fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)+fluxsurfabs_sw(1:ngrid)
897
898	!if(noradsurf)then ! no lower surface; SW flux just disappears
899	! GSR = SUM(fluxsurf_sw(1:ngrid)*cell_area(1:ngrid))/totarea
900	! fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)
901	! print*,'SW lost in deep atmosphere = ',GSR,' W m^-2'
902	!endif
903
904	! Net atmospheric radiative heating rate (K.s-1)
905	dtrad(1:ngrid,1:nlayer)=zdtsw(1:ngrid,1:nlayer)+zdtlw(1:ngrid,1:nlayer)
906
907	! Late initialization of the Ice Spectral Albedo. We needed the visible bands to do that !
908	if (firstcall .and. albedo_spectral_mode) then
909	call spectral_albedo_calc(albedo_snow_SPECTV)
910	endif
911
912	elseif(newtonian)then
913
914	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
915	! II.b Call Newtonian cooling scheme
916	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
917	call newtrelax(ngrid,nlayer,mu0,sinlat,zpopsk,pt,pplay,pplev,dtrad,firstcall)
918
919	zdtsurf(1:ngrid) = +(pt(1:ngrid,1)-tsurf(1:ngrid))/ptimestep
920	! e.g. surface becomes proxy for 1st atmospheric layer ?
921
922	else
923
924	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
925	! II.c Atmosphere has no radiative effect
926	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
927	fluxtop_dn(1:ngrid) = fract(1:ngrid)mu0(1:ngrid)Fat1AU/dist_star**2
928	if(ngrid.eq.1)then ! / by 4 globally in 1D case...
929	fluxtop_dn(1) = fract(1)Fat1AU/dist_star*2/2.0
930	endif
931	fluxsurf_sw(1:ngrid) = fluxtop_dn(1:ngrid)
932	print*,'------------WARNING---WARNING------------' ! by MT2015.
933	print*,'You are in corrk=false mode, '
934	print*,'and the surface albedo is taken equal to the first visible spectral value'
935
936	fluxsurfabs_sw(1:ngrid) = fluxtop_dn(1:ngrid)*(1.-albedo(1:ngrid,1))
937	fluxrad_sky(1:ngrid) = fluxsurfabs_sw(1:ngrid)
938	fluxtop_lw(1:ngrid) = emis(1:ngrid)sigmatsurf(1:ngrid)**4
939
940	dtrad(1:ngrid,1:nlayer)=0.0 ! no atmospheric radiative heating
941
942	endif ! end of corrk
943
944	endif ! of if(mod(icount-1,iradia).eq.0)
945
946
947	! Transformation of the radiative tendencies
948	! ------------------------------------------
949	zplanck(1:ngrid)=tsurf(1:ngrid)*tsurf(1:ngrid)
950	zplanck(1:ngrid)=emis(1:ngrid)sigmazplanck(1:ngrid)*zplanck(1:ngrid)
951	fluxrad(1:ngrid)=fluxrad_sky(1:ngrid)-zplanck(1:ngrid)
952	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+dtrad(1:ngrid,1:nlayer)
953
954	! Test of energy conservation
955	!----------------------------
956	if(enertest)then
957	call planetwide_sumval(cppmassarea(:,:)zdtsw(:,:)/totarea_planet,dEtotSW)
958	call planetwide_sumval(cppmassarea(:,:)zdtlw(:,:)/totarea_planet,dEtotLW)
959	!call planetwide_sumval(fluxsurf_sw(:)(1.-albedo_equivalent(:))cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
960	call planetwide_sumval(fluxsurfabs_sw(:)*cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
961	call planetwide_sumval((fluxsurf_lw(:)emis(:)-zplanck(:))cell_area(:)/totarea_planet,dEtotsLW)
962	dEzRadsw(:,:)=cppmass(:,:)zdtsw(:,:)
963	dEzRadlw(:,:)=cppmass(:,:)zdtlw(:,:)
964	if (is_master) then
965	print*,'---------------------------------------------------------------'
966	print*,'In corrk SW atmospheric heating =',dEtotSW,' W m-2'
967	print*,'In corrk LW atmospheric heating =',dEtotLW,' W m-2'
968	print*,'atmospheric net rad heating (SW+LW) =',dEtotLW+dEtotSW,' W m-2'
969	print*,'In corrk SW surface heating =',dEtotsSW,' W m-2'
970	print*,'In corrk LW surface heating =',dEtotsLW,' W m-2'
971	print*,'surface net rad heating (SW+LW) =',dEtotsLW+dEtotsSW,' W m-2'
972	endif
973	endif ! end of 'enertest'
974
975	endif ! of if (callrad)
976
977
978
979	! --------------------------------------------
980	! III. Vertical diffusion (turbulent mixing) :
981	! --------------------------------------------
982
983	if (calldifv) then
984
985	zflubid(1:ngrid)=fluxrad(1:ngrid)+fluxgrd(1:ngrid)
986
987	! JL12 the following if test is temporarily there to allow us to compare the old vdifc with turbdiff.
988	if (UseTurbDiff) then
989
990	call turbdiff(ngrid,nlayer,nq,rnat, &
991	ptimestep,capcal,lwrite, &
992	pplay,pplev,zzlay,zzlev,z0, &
993	pu,pv,pt,zpopsk,pq,tsurf,emis,qsurf, &
994	pdt,pdq,zflubid, &
995	zdudif,zdvdif,zdtdif,zdtsdif, &
996	sensibFlux,q2,zdqdif,zdqevap,zdqsdif, &
997	taux,tauy,lastcall)
998
999	else
1000
1001	zdh(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
1002
1003	call vdifc(ngrid,nlayer,nq,rnat,zpopsk, &
1004	ptimestep,capcal,lwrite, &
1005	pplay,pplev,zzlay,zzlev,z0, &
1006	pu,pv,zh,pq,tsurf,emis,qsurf, &
1007	zdh,pdq,zflubid, &
1008	zdudif,zdvdif,zdhdif,zdtsdif, &
1009	sensibFlux,q2,zdqdif,zdqsdif, &
1010	taux,tauy,lastcall)
1011
1012	zdtdif(1:ngrid,1:nlayer)=zdhdif(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
1013	zdqevap(1:ngrid,1:nlayer)=0.
1014
1015	end if !end of 'UseTurbDiff'
1016
1017	!!! this is always done, except for turbulence-resolving simulations
1018	if (.not. turb_resolved) then
1019	pdv(1:ngrid,1:nlayer)=pdv(1:ngrid,1:nlayer)+zdvdif(1:ngrid,1:nlayer)
1020	pdu(1:ngrid,1:nlayer)=pdu(1:ngrid,1:nlayer)+zdudif(1:ngrid,1:nlayer)
1021	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+zdtdif(1:ngrid,1:nlayer)
1022	zdtsurf(1:ngrid)=zdtsurf(1:ngrid)+zdtsdif(1:ngrid)
1023	endif
1024
1025	if(ok_slab_ocean)then
1026	flux_sens_lat(1:ngrid)=(zdtsdif(1:ngrid)*capcal(1:ngrid)-fluxrad(1:ngrid))
1027	endif
1028
1029
1030	if (tracer) then
1031	pdq(1:ngrid,1:nlayer,1:nq)=pdq(1:ngrid,1:nlayer,1:nq)+ zdqdif(1:ngrid,1:nlayer,1:nq)
1032	dqsurf(1:ngrid,1:nq)=dqsurf(1:ngrid,1:nq) + zdqsdif(1:ngrid,1:nq)
1033	end if ! of if (tracer)
1034
1035
1036	! test energy conservation
1037	!-------------------------
1038	if(enertest)then
1039
1040	dEzdiff(:,:)=cppmass(:,:)zdtdif(:,:)
1041	do ig = 1, ngrid
1042	dEdiff(ig)=SUM(dEzdiff (ig,:))+ sensibFlux(ig)! subtract flux to the ground
1043	dEzdiff(ig,1)= dEzdiff(ig,1)+ sensibFlux(ig)! subtract flux to the ground
1044	enddo
1045
1046	call planetwide_sumval(dEdiff(:)*cell_area(:)/totarea_planet,dEtot)
1047	dEdiffs(:)=capcal(:)*zdtsdif(:)-zflubid(:)-sensibFlux(:)
1048	call planetwide_sumval(dEdiffs(:)*cell_area(:)/totarea_planet,dEtots)
1049	call planetwide_sumval(sensibFlux(:)*cell_area(:)/totarea_planet,AtmToSurf_TurbFlux)
1050
1051	if (is_master) then
1052
1053	if (UseTurbDiff) then
1054	print*,'In TurbDiff sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
1055	print*,'In TurbDiff non-cons atm nrj change =',dEtot,' W m-2'
1056	print*,'In TurbDiff (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1057	else
1058	print*,'In vdifc sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
1059	print*,'In vdifc non-cons atm nrj change =',dEtot,' W m-2'
1060	print*,'In vdifc (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1061	end if
1062	endif ! end of 'is_master'
1063
1064	! JL12 : note that the black body radiative flux emitted by the surface has been updated by the implicit scheme but not given back elsewhere.
1065	endif ! end of 'enertest'
1066
1067
1068	! Test water conservation.
1069	if(watertest.and.water)then
1070
1071	call planetwide_sumval(massarea(:,:)zdqdif(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dWtot_tmp)
1072	call planetwide_sumval(zdqsdif(:,igcm_h2o_vap)cell_area(:)ptimestep/totarea_planet,dWtots_tmp)
1073	do ig = 1, ngrid
1074	vdifcncons(ig)=SUM(mass(ig,:)*zdqdif(ig,:,igcm_h2o_vap))
1075	enddo
1076	call planetwide_sumval(massarea(:,:)zdqdif(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1077	call planetwide_sumval(zdqsdif(:,igcm_h2o_ice)cell_area(:)ptimestep/totarea_planet,dWtots)
1078	dWtot = dWtot + dWtot_tmp
1079	dWtots = dWtots + dWtots_tmp
1080	do ig = 1, ngrid
1081	vdifcncons(ig)=vdifcncons(ig) + SUM(mass(ig,:)*zdqdif(ig,:,igcm_h2o_ice))
1082	enddo
1083	call planetwide_maxval(vdifcncons(:),nconsMAX)
1084
1085	if (is_master) then
1086	print*,'---------------------------------------------------------------'
1087	print*,'In difv atmospheric water change =',dWtot,' kg m-2'
1088	print*,'In difv surface water change =',dWtots,' kg m-2'
1089	print*,'In difv non-cons factor =',dWtot+dWtots,' kg m-2'
1090	print*,'In difv MAX non-cons factor =',nconsMAX,' kg m-2 s-1'
1091	endif
1092
1093	endif ! end of 'watertest'
1094	!-------------------------
1095
1096	else ! calldifv
1097
1098	if(.not.newtonian)then
1099
1100	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + (fluxrad(1:ngrid) + fluxgrd(1:ngrid))/capcal(1:ngrid)
1101
1102	endif
1103
1104	endif ! end of 'calldifv'
1105
1106
1107	!----------------------------------
1108	! IV. Dry convective adjustment :
1109	!----------------------------------
1110
1111	if(calladj) then
1112
1113	zdh(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
1114	zduadj(1:ngrid,1:nlayer)=0.0
1115	zdvadj(1:ngrid,1:nlayer)=0.0
1116	zdhadj(1:ngrid,1:nlayer)=0.0
1117
1118
1119	call convadj(ngrid,nlayer,nq,ptimestep, &
1120	pplay,pplev,zpopsk, &
1121	pu,pv,zh,pq, &
1122	pdu,pdv,zdh,pdq, &
1123	zduadj,zdvadj,zdhadj, &
1124	zdqadj)
1125
1126	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zduadj(1:ngrid,1:nlayer)
1127	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvadj(1:ngrid,1:nlayer)
1128	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer)
1129	zdtadj(1:ngrid,1:nlayer) = zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
1130
1131	if(tracer) then
1132	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqadj(1:ngrid,1:nlayer,1:nq)
1133	end if
1134
1135	! Test energy conservation
1136	if(enertest)then
1137	call planetwide_sumval(cppmassarea(:,:)zdtadj(:,:)/totarea_planet,dEtot)
1138	if (is_master) print*,'In convadj atmospheric energy change =',dEtot,' W m-2'
1139	endif
1140
1141	! Test water conservation
1142	if(watertest)then
1143	call planetwide_sumval(massarea(:,:)zdqadj(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dWtot_tmp)
1144	do ig = 1, ngrid
1145	cadjncons(ig)=SUM(mass(ig,:)*zdqadj(ig,:,igcm_h2o_vap))
1146	enddo
1147	call planetwide_sumval(massarea(:,:)zdqadj(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1148	dWtot = dWtot + dWtot_tmp
1149	do ig = 1, ngrid
1150	cadjncons(ig)=cadjncons(ig) + SUM(mass(ig,:)*zdqadj(ig,:,igcm_h2o_ice))
1151	enddo
1152	call planetwide_maxval(cadjncons(:),nconsMAX)
1153
1154	if (is_master) then
1155	print*,'In convadj atmospheric water change =',dWtot,' kg m-2'
1156	print*,'In convadj MAX non-cons factor =',nconsMAX,' kg m-2 s-1'
1157	endif
1158
1159	endif ! end of 'watertest'
1160
1161	endif ! end of 'calladj'
1162
1163	!-----------------------------------------------
1164	! V. Carbon dioxide condensation-sublimation :
1165	!-----------------------------------------------
1166
1167	if (co2cond) then
1168
1169	if (.not.tracer) then
1170	print*,'We need a CO2 ice tracer to condense CO2'
1171	call abort
1172	endif
1173	call condense_co2(ngrid,nlayer,nq,ptimestep, &
1174	capcal,pplay,pplev,tsurf,pt, &
1175	pdt,zdtsurf,pq,pdq, &
1176	qsurf,zdqsurfc,albedo,emis, &
1177	albedo_bareground,albedo_co2_ice_SPECTV, &
1178	zdtc,zdtsurfc,pdpsrf,zdqc)
1179
1180	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtc(1:ngrid,1:nlayer)
1181	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfc(1:ngrid)
1182
1183	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+ zdqc(1:ngrid,1:nlayer,1:nq)
1184	dqsurf(1:ngrid,igcm_co2_ice) = dqsurf(1:ngrid,igcm_co2_ice) + zdqsurfc(1:ngrid)
1185
1186	! test energy conservation
1187	if(enertest)then
1188	call planetwide_sumval(cppmassarea(:,:)zdtc(:,:)/totarea_planet,dEtot)
1189	call planetwide_sumval(capcal(:)zdtsurfc(:)cell_area(:)/totarea_planet,dEtots)
1190	if (is_master) then
1191	print*,'In co2cloud atmospheric energy change =',dEtot,' W m-2'
1192	print*,'In co2cloud surface energy change =',dEtots,' W m-2'
1193	endif
1194	endif
1195
1196	endif ! end of 'co2cond'
1197
1198
1199	!---------------------------------------------
1200	! VI. Specific parameterizations for tracers
1201	!---------------------------------------------
1202
1203	if (tracer) then
1204
1205	! ---------------------
1206	! VI.1. Water and ice
1207	! ---------------------
1208	if (water) then
1209
1210	! Water ice condensation in the atmosphere
1211	if(watercond.and.(RLVTT.gt.1.e-8))then
1212
1213	dqmoist(1:ngrid,1:nlayer,1:nq)=0.
1214	dtmoist(1:ngrid,1:nlayer)=0.
1215
1216	! Moist Convective Adjustment.
1217	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1218	call moistadj(ngrid,nlayer,nq,pt,pq,pdq,pplev,pplay,dtmoist,dqmoist,ptimestep,rneb_man)
1219
1220	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap) &
1221	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_vap)
1222	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice) &
1223	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_ice)
1224	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtmoist(1:ngrid,1:nlayer)
1225
1226	! Test energy conservation.
1227	if(enertest)then
1228
1229	call planetwide_sumval(cppmassarea(:,:)dtmoist(:,:)/totarea_planet,dEtot)
1230	call planetwide_maxval(dtmoist(:,:),dtmoist_max)
1231	call planetwide_minval(dtmoist(:,:),dtmoist_min)
1232	madjdEz(:,:)=cppmass(:,:)dtmoist(:,:)
1233	do ig=1,ngrid
1234	madjdE(ig) = cppSUM(mass(:,:)dtmoist(:,:))
1235	enddo
1236
1237	if (is_master) then
1238	print*,'In moistadj atmospheric energy change =',dEtot,' W m-2'
1239	print,'In moistadj MAX atmospheric energy change =',dtmoist_maxptimestep,'K/step'
1240	print,'In moistadj MIN atmospheric energy change =',dtmoist_minptimestep,'K/step'
1241	endif
1242
1243	call planetwide_sumval(massarea(:,:)dqmoist(:,:,igcm_h2o_vap)ptimestep/totarea_planet+ &
1244	massarea(:,:)dqmoist(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1245	if (is_master) print*,'In moistadj atmospheric water change =',dWtot,' kg m-2'
1246
1247	endif ! end of 'enertest'
1248
1249
1250	! Large scale condensation/evaporation.
1251	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1252	call largescale(ngrid,nlayer,nq,ptimestep,pplev,pplay,pt,pq,pdt,pdq,dtlscale,dqvaplscale,dqcldlscale,rneb_lsc)
1253
1254	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtlscale(1:ngrid,1:nlayer)
1255	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap)+dqvaplscale(1:ngrid,1:nlayer)
1256	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice)+dqcldlscale(1:ngrid,1:nlayer)
1257
1258	! Test energy conservation.
1259	if(enertest)then
1260	lscaledEz(:,:) = cppmass(:,:)dtlscale(:,:)
1261	do ig=1,ngrid
1262	lscaledE(ig) = cppSUM(mass(:,:)dtlscale(:,:))
1263	enddo
1264	call planetwide_sumval(cppmassarea(:,:)dtlscale(:,:)/totarea_planet,dEtot)
1265
1266	if (is_master) print*,'In largescale atmospheric energy change =',dEtot,' W m-2'
1267
1268	! Test water conservation.
1269	call planetwide_sumval(massarea(:,:)dqvaplscale(:,:)ptimestep/totarea_planet+ &
1270	SUM(massarea(:,:)dqcldlscale(:,:))ptimestep/totarea_planet,dWtot)
1271
1272	if (is_master) print*,'In largescale atmospheric water change =',dWtot,' kg m-2'
1273	endif ! end of 'enertest'
1274
1275	! Compute cloud fraction.
1276	do l = 1, nlayer
1277	do ig=1,ngrid
1278	cloudfrac(ig,l)=MAX(rneb_lsc(ig,l),rneb_man(ig,l))
1279	enddo
1280	enddo
1281
1282	endif ! end of 'watercond'
1283
1284	! Water ice / liquid precipitation.
1285	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1286	if(waterrain)then
1287
1288	zdqrain(1:ngrid,1:nlayer,1:nq) = 0.0
1289	zdqsrain(1:ngrid) = 0.0
1290	zdqssnow(1:ngrid) = 0.0
1291
1292	call rain(ngrid,nlayer,nq,ptimestep,pplev,pplay,pt,pdt,pq,pdq, &
1293	zdtrain,zdqrain,zdqsrain,zdqssnow,reevap_precip,cloudfrac)
1294
1295	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap) &
1296	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap)
1297	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice) &
1298	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_ice)
1299	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtrain(1:ngrid,1:nlayer)
1300
1301	dqsurf(1:ngrid,igcm_h2o_vap) = dqsurf(1:ngrid,igcm_h2o_vap)+zdqsrain(1:ngrid)
1302	dqsurf(1:ngrid,igcm_h2o_ice) = dqsurf(1:ngrid,igcm_h2o_ice)+zdqssnow(1:ngrid)
1303
1304	! Test energy conservation.
1305	if(enertest)then
1306
1307	call planetwide_sumval(cppmassarea(:,:)zdtrain(:,:)/totarea_planet,dEtot)
1308	if (is_master) print*,'In rain atmospheric T energy change =',dEtot,' W m-2'
1309	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_ice)/totarea_planetRLVTT/cpp,dItot_tmp)
1310	call planetwide_sumval(cell_area(:)zdqssnow(:)/totarea_planetRLVTT/cpp,dItot)
1311	dItot = dItot + dItot_tmp
1312	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dVtot_tmp)
1313	call planetwide_sumval(cell_area(:)zdqsrain(:)/totarea_planetRLVTT/cpp,dVtot)
1314	dVtot = dVtot + dVtot_tmp
1315	dEtot = dItot + dVtot
1316
1317	if (is_master) then
1318	print*,'In rain dItot =',dItot,' W m-2'
1319	print*,'In rain dVtot =',dVtot,' W m-2'
1320	print*,'In rain atmospheric L energy change =',dEtot,' W m-2'
1321	endif
1322
1323	! Test water conservation
1324	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_vap)ptimestep/totarea_planet+ &
1325	massarea(:,:)zdqrain(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1326	call planetwide_sumval((zdqsrain(:)+zdqssnow(:))cell_area(:)ptimestep/totarea_planet,dWtots)
1327
1328	if (is_master) then
1329	print*,'In rain atmospheric water change =',dWtot,' kg m-2'
1330	print*,'In rain surface water change =',dWtots,' kg m-2'
1331	print*,'In rain non-cons factor =',dWtot+dWtots,' kg m-2'
1332	endif
1333
1334	endif ! end of 'enertest'
1335
1336	end if ! enf of 'waterrain'
1337
1338	end if ! end of 'water'
1339
1340	! -------------------------
1341	! VI.2. Photochemistry
1342	! -------------------------
1343
1344	IF (photochem) then
1345
1346	DO ig=1,ngrid
1347	array_zero1(ig)=0.0
1348	DO l=1,nlayer
1349	array_zero2(ig,l)=0.
1350	ENDDO
1351	ENDDO
1352
1353	call calchim_asis(ngrid,nlayer,nq, &
1354	ptimestep,pplay,pplev,pt,pdt,dist_star,mu0, &
1355	fract,zzlev,zzlay,zday,pq,pdq,zdqchim,zdqschim, &
1356	array_zero1,array_zero1, &
1357	pu,pdu,pv,pdv,array_zero2,array_zero2)
1358
1359	! increment values of tracers:
1360	DO iq=1,nq ! loop on all tracers; tendencies for non-chemistry
1361	! tracers is zero anyways
1362	DO l=1,nlayer
1363	DO ig=1,ngrid
1364	pdq(ig,l,iq)=pdq(ig,l,iq)+zdqchim(ig,l,iq)
1365	ENDDO
1366	ENDDO
1367	ENDDO ! of DO iq=1,nq
1368
1369
1370	! increment surface values of tracers:
1371	DO iq=1,nq ! loop on all tracers; tendencies for non-chemistry
1372	! tracers is zero anyways
1373	DO ig=1,ngrid
1374	! dqsurf(ig,iq)=dqsurf(ig,iq)+zdqschim(ig,iq)
1375	ENDDO
1376	ENDDO ! of DO iq=1,nq
1377
1378	END IF ! of IF (photochem)
1379
1380
1381
1382	! -------------------------
1383	! VI.3. Aerosol particles
1384	! -------------------------
1385
1386	! Sedimentation.
1387	if (sedimentation) then
1388
1389	zdqsed(1:ngrid,1:nlayer,1:nq) = 0.0
1390	zdqssed(1:ngrid,1:nq) = 0.0
1391
1392	if(watertest)then
1393
1394	iq=igcm_h2o_ice
1395	call planetwide_sumval(massarea(:,:)pq(:,:,iq)ptimestep/totarea_planet,dWtot)
1396	call planetwide_sumval(massarea(:,:)pdq(:,:,iq)ptimestep/totarea_planet,dWtots)
1397	if (is_master) then
1398	print*,'Before sedim pq =',dWtot,' kg m-2'
1399	print*,'Before sedim pdq =',dWtots,' kg m-2'
1400	endif
1401	endif
1402
1403	call callsedim(ngrid,nlayer,ptimestep, &
1404	pplev,zzlev,pt,pdt,pq,pdq, &
1405	zdqsed,zdqssed,nq)
1406
1407	if(watertest)then
1408	iq=igcm_h2o_ice
1409	call planetwide_sumval(massarea(:,:)pq(:,:,iq)ptimestep/totarea_planet,dWtot)
1410	call planetwide_sumval(massarea(:,:)pdq(:,:,iq)ptimestep/totarea_planet,dWtots)
1411	if (is_master) then
1412	print*,'After sedim pq =',dWtot,' kg m-2'
1413	print*,'After sedim pdq =',dWtots,' kg m-2'
1414	endif
1415	endif
1416
1417	! Whether it falls as rain or snow depends only on the surface temperature
1418	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqsed(1:ngrid,1:nlayer,1:nq)
1419	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqssed(1:ngrid,1:nq)
1420
1421	! Test water conservation
1422	if(watertest)then
1423	call planetwide_sumval(massarea(:,:)(zdqsed(:,:,igcm_h2o_vap)+zdqsed(:,:,igcm_h2o_ice))ptimestep/totarea_planet,dWtot)
1424	call planetwide_sumval((zdqssed(:,igcm_h2o_vap)+zdqssed(:,igcm_h2o_ice))cell_area(:)ptimestep/totarea_planet,dWtots)
1425	if (is_master) then
1426	print*,'In sedim atmospheric ice change =',dWtot,' kg m-2'
1427	print*,'In sedim surface ice change =',dWtots,' kg m-2'
1428	print*,'In sedim non-cons factor =',dWtot+dWtots,' kg m-2'
1429	endif
1430	endif
1431
1432	end if ! end of 'sedimentation'
1433
1434
1435	! ---------------
1436	! VI.4. Updates
1437	! ---------------
1438
1439	! Updating Atmospheric Mass and Tracers budgets.
1440	if(mass_redistrib) then
1441
1442	zdmassmr(1:ngrid,1:nlayer) = mass(1:ngrid,1:nlayer) * &
1443	( zdqevap(1:ngrid,1:nlayer) &
1444	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap) &
1445	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_vap) &
1446	+ dqvaplscale(1:ngrid,1:nlayer) )
1447
1448	do ig = 1, ngrid
1449	zdmassmr_col(ig)=SUM(zdmassmr(ig,1:nlayer))
1450	enddo
1451
1452	call writediagfi(ngrid,"mass_evap","mass gain"," ",3,zdmassmr)
1453	call writediagfi(ngrid,"mass_evap_col","mass gain col"," ",2,zdmassmr_col)
1454	call writediagfi(ngrid,"mass","mass","kg/m2",3,mass)
1455
1456	call mass_redistribution(ngrid,nlayer,nq,ptimestep, &
1457	rnat,capcal,pplay,pplev,pt,tsurf,pq,qsurf, &
1458	pu,pv,pdt,zdtsurf,pdq,pdu,pdv,zdmassmr, &
1459	zdtmr,zdtsurfmr,zdpsrfmr,zdumr,zdvmr,zdqmr,zdqsurfmr)
1460
1461	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqmr(1:ngrid,1:nlayer,1:nq)
1462	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqsurfmr(1:ngrid,1:nq)
1463	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdtmr(1:ngrid,1:nlayer)
1464	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zdumr(1:ngrid,1:nlayer)
1465	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvmr(1:ngrid,1:nlayer)
1466	pdpsrf(1:ngrid) = pdpsrf(1:ngrid) + zdpsrfmr(1:ngrid)
1467	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfmr(1:ngrid)
1468
1469	endif
1470
1471	! ------------------
1472	! VI.5. Slab Ocean
1473	! ------------------
1474
1475	if (ok_slab_ocean)then
1476
1477	do ig=1,ngrid
1478	qsurfint(:,igcm_h2o_ice)=qsurf(:,igcm_h2o_ice)
1479	enddo
1480
1481	call ocean_slab_ice(ptimestep, &
1482	ngrid, knindex, tsea_ice, fluxrad, &
1483	zdqssnow, qsurf(:,igcm_h2o_ice), &
1484	- zdqsdif(:,igcm_h2o_vap), &
1485	flux_sens_lat,tsea_ice, pctsrf_sic, &
1486	taux,tauy,icount)
1487
1488
1489	call ocean_slab_get_vars(ngrid,tslab, &
1490	sea_ice, flux_o, &
1491	flux_g, dt_hdiff, &
1492	dt_ekman)
1493
1494	do ig=1,ngrid
1495	if (nint(rnat(ig)).eq.1)then
1496	tslab(ig,1) = 0.
1497	tslab(ig,2) = 0.
1498	tsea_ice(ig) = 0.
1499	sea_ice(ig) = 0.
1500	pctsrf_sic(ig) = 0.
1501	qsurf(ig,igcm_h2o_ice) = qsurfint(ig,igcm_h2o_ice)
1502	endif
1503	enddo
1504
1505	endif ! end of 'ok_slab_ocean'
1506
1507	! -----------------------------
1508	! VI.6. Surface Tracer Update
1509	! -----------------------------
1510
1511	if(hydrology)then
1512
1513	call hydrol(ngrid,nq,ptimestep,rnat,tsurf,qsurf,dqsurf,dqs_hyd, &
1514	capcal,albedo,albedo_bareground, &
1515	albedo_snow_SPECTV,albedo_co2_ice_SPECTV, &
1516	mu0,zdtsurf,zdtsurf_hyd,hice,pctsrf_sic, &
1517	sea_ice)
1518
1519	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurf_hyd(1:ngrid)
1520	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + dqs_hyd(1:ngrid,1:nq)
1521
1522	qsurf(1:ngrid,1:nq) = qsurf(1:ngrid,1:nq) + ptimestep*dqsurf(1:ngrid,1:nq)
1523
1524	! Test energy conservation
1525	if(enertest)then
1526	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf_hyd(:)/totarea_planet,dEtots)
1527	if (is_master) print*,'In hydrol surface energy change =',dEtots,' W m-2'
1528	endif
1529
1530	! test water conservation
1531	if(watertest)then
1532	call planetwide_sumval(dqs_hyd(:,igcm_h2o_ice)cell_area(:)ptimestep/totarea_planet,dWtots)
1533	if (is_master) print*,'In hydrol surface ice change =',dWtots,' kg m-2'
1534	call planetwide_sumval(dqs_hyd(:,igcm_h2o_vap)cell_area(:)ptimestep/totarea_planet,dWtots)
1535	if (is_master) then
1536	print*,'In hydrol surface water change =',dWtots,' kg m-2'
1537	print*,'---------------------------------------------------------------'
1538	endif
1539	endif
1540
1541	else ! of if (hydrology)
1542
1543	qsurf(1:ngrid,1:nq) = qsurf(1:ngrid,1:nq) + ptimestep*dqsurf(1:ngrid,1:nq)
1544
1545	end if ! of if (hydrology)
1546
1547	! Add qsurf to qsurf_hist, which is what we save in diagfi.nc. At the same time, we set the water
1548	! content of ocean gridpoints back to zero, in order to avoid rounding errors in vdifc, rain.
1549	qsurf_hist(:,:) = qsurf(:,:)
1550
1551	if(ice_update)then
1552	ice_min(1:ngrid)=min(ice_min(1:ngrid),qsurf(1:ngrid,igcm_h2o_ice))
1553	endif
1554
1555	endif! end of if 'tracer'
1556
1557
1558	!------------------------------------------------
1559	! VII. Surface and sub-surface soil temperature
1560	!------------------------------------------------
1561
1562
1563	! Increment surface temperature
1564	if(ok_slab_ocean)then
1565	do ig=1,ngrid
1566	if (nint(rnat(ig)).eq.0)then
1567	zdtsurf(ig)= (tslab(ig,1) &
1568	+ pctsrf_sic(ig)*(tsea_ice(ig)-tslab(ig,1))-tsurf(ig))/ptimestep
1569	endif
1570	tsurf(ig)=tsurf(ig)+ptimestep*zdtsurf(ig)
1571	enddo
1572
1573	else
1574	tsurf(1:ngrid)=tsurf(1:ngrid)+ptimestep*zdtsurf(1:ngrid)
1575	endif ! end of 'ok_slab_ocean'
1576
1577
1578	! Compute soil temperatures and subsurface heat flux.
1579	if (callsoil) then
1580	call soil(ngrid,nsoilmx,.false.,lastcall,inertiedat, &
1581	ptimestep,tsurf,tsoil,capcal,fluxgrd)
1582	endif
1583
1584
1585	if (ok_slab_ocean) then
1586
1587	do ig=1,ngrid
1588
1589	fluxgrdocean(ig)=fluxgrd(ig)
1590	if (nint(rnat(ig)).eq.0) then
1591	capcal(ig)=capcalocean
1592	fluxgrd(ig)=0.
1593	fluxgrdocean(ig)=pctsrf_sic(ig)flux_g(ig)+(1-pctsrf_sic(ig))(dt_hdiff(ig,1)+dt_ekman(ig,1))
1594	do iq=1,nsoilmx
1595	tsoil(ig,iq)=tsurf(ig)
1596	enddo
1597	if (pctsrf_sic(ig).gt.0.5) then
1598	capcal(ig)=capcalseaice
1599	if (qsurf(ig,igcm_h2o_ice).gt.0.) then
1600	capcal(ig)=capcalsno
1601	endif
1602	endif
1603	endif
1604
1605	enddo
1606
1607	endif !end of 'ok_slab_ocean'
1608
1609
1610	! Test energy conservation
1611	if(enertest)then
1612	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf(:)/totarea_planet,dEtots)
1613	if (is_master) print*,'Surface energy change =',dEtots,' W m-2'
1614	endif
1615
1616
1617	!---------------------------------------------------
1618	! VIII. Perform diagnostics and write output files
1619	!---------------------------------------------------
1620
1621	! Note : For output only: the actual model integration is performed in the dynamics.
1622
1623
1624
1625	! Temperature, zonal and meridional winds.
1626	zt(1:ngrid,1:nlayer) = pt(1:ngrid,1:nlayer) + pdt(1:ngrid,1:nlayer)*ptimestep
1627	zu(1:ngrid,1:nlayer) = pu(1:ngrid,1:nlayer) + pdu(1:ngrid,1:nlayer)*ptimestep
1628	zv(1:ngrid,1:nlayer) = pv(1:ngrid,1:nlayer) + pdv(1:ngrid,1:nlayer)*ptimestep
1629
1630	! Diagnostic.
1631	zdtdyn(1:ngrid,1:nlayer) = (pt(1:ngrid,1:nlayer)-ztprevious(1:ngrid,1:nlayer)) / ptimestep
1632	ztprevious(1:ngrid,1:nlayer) = zt(1:ngrid,1:nlayer)
1633
1634	zdudyn(1:ngrid,1:nlayer) = (pu(1:ngrid,1:nlayer)-zuprevious(1:ngrid,1:nlayer)) / ptimestep
1635	zuprevious(1:ngrid,1:nlayer) = zu(1:ngrid,1:nlayer)
1636
1637	if(firstcall)then
1638	zdtdyn(1:ngrid,1:nlayer)=0.0
1639	zdudyn(1:ngrid,1:nlayer)=0.0
1640	endif
1641
1642	! Dynamical heating diagnostic.
1643	do ig=1,ngrid
1644	fluxdyn(ig)= SUM(zdtdyn(ig,:) mass(ig,:))cpp
1645	enddo
1646
1647	! Tracers.
1648	zq(1:ngrid,1:nlayer,1:nq) = pq(1:ngrid,1:nlayer,1:nq) + pdq(1:ngrid,1:nlayer,1:nq)*ptimestep
1649
1650	! Surface pressure.
1651	ps(1:ngrid) = pplev(1:ngrid,1) + pdpsrf(1:ngrid)*ptimestep
1652
1653
1654
1655	! Surface and soil temperature information
1656	call planetwide_sumval(cell_area(:)*tsurf(:)/totarea_planet,Ts1)
1657	call planetwide_minval(tsurf(:),Ts2)
1658	call planetwide_maxval(tsurf(:),Ts3)
1659	if(callsoil)then
1660	TsS = SUM(cell_area(:)*tsoil(:,nsoilmx))/totarea ! mean temperature at bottom soil layer
1661	if (is_master) then
1662	print*,' ave[Tsurf] min[Tsurf] max[Tsurf] ave[Tdeep]'
1663	print*,Ts1,Ts2,Ts3,TsS
1664	end if
1665	else
1666	if (is_master) then
1667	print*,' ave[Tsurf] min[Tsurf] max[Tsurf]'
1668	print*,Ts1,Ts2,Ts3
1669	endif
1670	end if
1671
1672
1673	! Check the energy balance of the simulation during the run
1674	if(corrk)then
1675
1676	call planetwide_sumval(cell_area(:)*fluxtop_dn(:)/totarea_planet,ISR)
1677	call planetwide_sumval(cell_area(:)*fluxabs_sw(:)/totarea_planet,ASR)
1678	call planetwide_sumval(cell_area(:)*fluxtop_lw(:)/totarea_planet,OLR)
1679	call planetwide_sumval(cell_area(:)*fluxgrd(:)/totarea_planet,GND)
1680	call planetwide_sumval(cell_area(:)*fluxdyn(:)/totarea_planet,DYN)
1681	do ig=1,ngrid
1682	if(fluxtop_dn(ig).lt.0.0)then
1683	print*,'fluxtop_dn has gone crazy'
1684	print*,'fluxtop_dn=',fluxtop_dn(ig)
1685	print*,'tau_col=',tau_col(ig)
1686	print*,'aerosol=',aerosol(ig,:,:)
1687	print*,'temp= ',pt(ig,:)
1688	print*,'pplay= ',pplay(ig,:)
1689	call abort
1690	endif
1691	end do
1692
1693	if(ngrid.eq.1)then
1694	DYN=0.0
1695	endif
1696
1697	if (is_master) then
1698	print*,' ISR ASR OLR GND DYN [W m^-2]'
1699	print*, ISR,ASR,OLR,GND,DYN
1700	endif
1701
1702	if(enertest .and. is_master)then
1703	print*,'SW flux/heating difference SW++ - ASR = ',dEtotSW+dEtotsSW-ASR,' W m-2'
1704	print*,'LW flux/heating difference LW++ - OLR = ',dEtotLW+dEtotsLW+OLR,' W m-2'
1705	print*,'LW energy balance LW++ + ASR = ',dEtotLW+dEtotsLW+ASR,' W m-2'
1706	endif
1707
1708	if(meanOLR .and. is_master)then
1709	if((ngrid.gt.1) .or. (mod(icount-1,ecritphy).eq.0))then
1710	! to record global radiative balance
1711	open(92,file="rad_bal.out",form='formatted',position='append')
1712	write(92,*) zday,ISR,ASR,OLR
1713	close(92)
1714	open(93,file="tem_bal.out",form='formatted',position='append')
1715	if(callsoil)then
1716	write(93,*) zday,Ts1,Ts2,Ts3,TsS
1717	else
1718	write(93,*) zday,Ts1,Ts2,Ts3
1719	endif
1720	close(93)
1721	endif
1722	endif
1723
1724	endif ! end of 'corrk'
1725
1726
1727	! Diagnostic to test radiative-convective timescales in code.
1728	if(testradtimes)then
1729	open(38,file="tau_phys.out",form='formatted',position='append')
1730	ig=1
1731	do l=1,nlayer
1732	write(38,*) -1./pdt(ig,l),pt(ig,l),pplay(ig,l)
1733	enddo
1734	close(38)
1735	print*,'As testradtimes enabled,'
1736	print*,'exiting physics on first call'
1737	call abort
1738	endif
1739
1740
1741	! Compute column amounts (kg m-2) if tracers are enabled.
1742	if(tracer)then
1743	qcol(1:ngrid,1:nq)=0.0
1744	do iq=1,nq
1745	do ig=1,ngrid
1746	qcol(ig,iq) = SUM( zq(ig,1:nlayer,iq) * mass(ig,1:nlayer))
1747	enddo
1748	enddo
1749
1750	! Generalised for arbitrary aerosols now. By LK
1751	reffcol(1:ngrid,1:naerkind)=0.0
1752	if(co2cond.and.(iaero_co2.ne.0))then
1753	call co2_reffrad(ngrid,nlayer,nq,zq,reffrad(1,1,iaero_co2))
1754	do ig=1,ngrid
1755	reffcol(ig,iaero_co2) = SUM(zq(ig,1:nlayer,igcm_co2_ice)reffrad(ig,1:nlayer,iaero_co2)mass(ig,1:nlayer))
1756	enddo
1757	endif
1758	if(water.and.(iaero_h2o.ne.0))then
1759	call h2o_reffrad(ngrid,nlayer,zq(1,1,igcm_h2o_ice),zt, &
1760	reffrad(1,1,iaero_h2o),nueffrad(1,1,iaero_h2o))
1761	do ig=1,ngrid
1762	reffcol(ig,iaero_h2o) = SUM(zq(ig,1:nlayer,igcm_h2o_ice)reffrad(ig,1:nlayer,iaero_h2o)mass(ig,1:nlayer))
1763	enddo
1764	endif
1765
1766	endif ! end of 'tracer'
1767
1768
1769	! Test for water conservation.
1770	if(water)then
1771
1772	call planetwide_sumval(cell_area(:)*qsurf_hist(:,igcm_h2o_ice)/totarea_planet,icesrf)
1773	call planetwide_sumval(cell_area(:)*qsurf_hist(:,igcm_h2o_vap)/totarea_planet,liqsrf)
1774	call planetwide_sumval(cell_area(:)*qcol(:,igcm_h2o_ice)/totarea_planet,icecol)
1775	call planetwide_sumval(cell_area(:)*qcol(:,igcm_h2o_vap)/totarea_planet,vapcol)
1776
1777	h2otot = icesrf + liqsrf + icecol + vapcol
1778
1779	if (is_master) then
1780	print*,' Total water amount [kg m^-2]: ',h2otot
1781	print*,' Surface ice Surface liq. Atmos. con. Atmos. vap. [kg m^-2] '
1782	print*, icesrf,liqsrf,icecol,vapcol
1783	endif
1784
1785	if(meanOLR .and. is_master)then
1786	if((ngrid.gt.1) .or. (mod(icount-1,ecritphy).eq.0))then
1787	! to record global water balance
1788	open(98,file="h2o_bal.out",form='formatted',position='append')
1789	write(98,*) zday,icesrf,liqsrf,icecol,vapcol
1790	close(98)
1791	endif
1792	endif
1793
1794	endif
1795
1796
1797	! Calculate RH (Relative Humidity) for diagnostic.
1798	if(water)then
1799
1800	do l = 1, nlayer
1801	do ig=1,ngrid
1802	call Psat_water(zt(ig,l),pplay(ig,l),psat_tmp,qsat(ig,l))
1803	RH(ig,l) = zq(ig,l,igcm_h2o_vap) / qsat(ig,l)
1804	enddo
1805	enddo
1806
1807	! Compute maximum possible H2O column amount (100% saturation).
1808	do ig=1,ngrid
1809	H2Omaxcol(ig) = SUM( qsat(ig,:) * mass(ig,:))
1810	enddo
1811
1812	endif ! end of 'water'
1813
1814
1815	if (is_master) print,'--> Ls =',zls180./pi
1816
1817
1818	!----------------------------------------------------------------------
1819	! Writing NetCDF file "RESTARTFI" at the end of the run
1820	!----------------------------------------------------------------------
1821
1822	! Note: 'restartfi' is stored just before dynamics are stored
1823	! in 'restart'. Between now and the writting of 'restart',
1824	! there will have been the itau=itau+1 instruction and
1825	! a reset of 'time' (lastacll = .true. when itau+1= itaufin)
1826	! thus we store for time=time+dtvr
1827
1828
1829
1830	if(lastcall) then
1831	ztime_fin = ptime + ptimestep/(float(iphysiq)*daysec)
1832
1833	! Update surface ice distribution to iterate to steady state if requested
1834	if(ice_update)then
1835
1836	do ig=1,ngrid
1837
1838	delta_ice = (qsurf(ig,igcm_h2o_ice)-ice_initial(ig))
1839
1840	! add multiple years of evolution
1841	qsurf_hist(ig,igcm_h2o_ice) = qsurf_hist(ig,igcm_h2o_ice) + delta_ice*icetstep
1842
1843	! if ice has gone -ve, set to zero
1844	if(qsurf_hist(ig,igcm_h2o_ice).lt.0.0)then
1845	qsurf_hist(ig,igcm_h2o_ice) = 0.0
1846	endif
1847
1848	! if ice is seasonal, set to zero (NEW)
1849	if(ice_min(ig).lt.0.01)then
1850	qsurf_hist(ig,igcm_h2o_ice) = 0.0
1851	endif
1852
1853	enddo
1854
1855	! enforce ice conservation
1856	ice_tot= SUM(qsurf_hist(:,igcm_h2o_ice)*cell_area(:) )/SUM(cell_area(:))
1857	qsurf_hist(:,igcm_h2o_ice) = qsurf_hist(:,igcm_h2o_ice)*(icesrf/ice_tot)
1858
1859	endif
1860	#ifndef MESOSCALE
1861
1862	if (ngrid.ne.1) then
1863	write(,)'PHYSIQ: for physdem ztime_fin =',ztime_fin
1864
1865	call physdem1("restartfi.nc",nsoilmx,ngrid,nlayer,nq, &
1866	ptimestep,ztime_fin, &
1867	tsurf,tsoil,emis,q2,qsurf_hist, &
1868	cloudfrac,totcloudfrac,hice, &
1869	rnat,pctsrf_sic,tslab,tsea_ice,sea_ice)
1870	endif
1871	#endif
1872	if(ok_slab_ocean) then
1873	call ocean_slab_final!(tslab, seaice)
1874	end if
1875
1876	endif ! end of 'lastcall'
1877
1878
1879	!-----------------------------------
1880	! Saving statistics :
1881	!-----------------------------------
1882
1883	! Note :("stats" stores and accumulates 8 key variables in file "stats.nc"
1884	! which can later be used to make the statistic files of the run:
1885	! "stats") only possible in 3D runs !!!
1886
1887
1888	if (callstats) then
1889
1890	call wstats(ngrid,"ps","Surface pressure","Pa",2,ps)
1891	call wstats(ngrid,"tsurf","Surface temperature","K",2,tsurf)
1892	call wstats(ngrid,"fluxsurf_lw", &
1893	"Thermal IR radiative flux to surface","W.m-2",2, &
1894	fluxsurf_lw)
1895	call wstats(ngrid,"fluxtop_lw", &
1896	"Thermal IR radiative flux to space","W.m-2",2, &
1897	fluxtop_lw)
1898
1899	! call wstats(ngrid,"fluxsurf_sw", &
1900	! "Solar radiative flux to surface","W.m-2",2, &
1901	! fluxsurf_sw_tot)
1902	! call wstats(ngrid,"fluxtop_sw", &
1903	! "Solar radiative flux to space","W.m-2",2, &
1904	! fluxtop_sw_tot)
1905
1906
1907	call wstats(ngrid,"ISR","incoming stellar rad.","W m-2",2,fluxtop_dn)
1908	call wstats(ngrid,"ASR","absorbed stellar rad.","W m-2",2,fluxabs_sw)
1909	call wstats(ngrid,"OLR","outgoing longwave rad.","W m-2",2,fluxtop_lw)
1910	!call wstats(ngrid,"ALB","Surface albedo"," ",2,albedo_equivalent)
1911	!call wstats(ngrid,"ALB_1st","First Band Surface albedo"," ",2,albedo(:,1))
1912	call wstats(ngrid,"p","Pressure","Pa",3,pplay)
1913	call wstats(ngrid,"temp","Atmospheric temperature","K",3,zt)
1914	call wstats(ngrid,"u","Zonal (East-West) wind","m.s-1",3,zu)
1915	call wstats(ngrid,"v","Meridional (North-South) wind","m.s-1",3,zv)
1916	call wstats(ngrid,"w","Vertical (down-up) wind","m.s-1",3,pw)
1917	call wstats(ngrid,"q2","Boundary layer eddy kinetic energy","m2.s-2",3,q2)
1918
1919	if (tracer) then
1920	do iq=1,nq
1921	call wstats(ngrid,noms(iq),noms(iq),'kg/kg',3,zq(1,1,iq))
1922	call wstats(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
1923	'kg m^-2',2,qsurf(1,iq) )
1924	call wstats(ngrid,trim(noms(iq))//'_col',trim(noms(iq))//'_col', &
1925	'kg m^-2',2,qcol(1,iq) )
1926
1927	! call wstats(ngrid,trim(noms(iq))//'_reff', &
1928	! trim(noms(iq))//'_reff', &
1929	! 'm',3,reffrad(1,1,iq))
1930
1931	end do
1932
1933	if (water) then
1934	vmr=zq(1:ngrid,1:nlayer,igcm_h2o_vap)*mugaz/mmol(igcm_h2o_vap)
1935	call wstats(ngrid,"vmr_h2ovapor", &
1936	"H2O vapour volume mixing ratio","mol/mol", &
1937	3,vmr)
1938	endif
1939
1940	endif ! end of 'tracer'
1941
1942	if(watercond.and.CLFvarying)then
1943	call wstats(ngrid,"rneb_man","H2O cloud fraction (conv)"," ",3,rneb_man)
1944	call wstats(ngrid,"rneb_lsc","H2O cloud fraction (large scale)"," ",3,rneb_lsc)
1945	call wstats(ngrid,"CLF","H2O cloud fraction"," ",3,cloudfrac)
1946	call wstats(ngrid,"CLFt","H2O column cloud fraction"," ",2,totcloudfrac)
1947	call wstats(ngrid,"RH","relative humidity"," ",3,RH)
1948	endif
1949
1950	if (ok_slab_ocean) then
1951	call wstats(ngrid,"dt_hdiff1","dt_hdiff1","K/s",2,dt_hdiff(:,1))
1952	call wstats(ngrid,"dt_hdiff2","dt_hdiff2","K/s",2,dt_hdiff(:,2))
1953	call wstats(ngrid,"dt_ekman1","dt_ekman1","K/s",2,dt_ekman(:,1))
1954	call wstats(ngrid,"dt_ekman2","dt_ekman2","K/s",2,dt_ekman(:,2))
1955	call wstats(ngrid,"tslab1","tslab1","K",2,tslab(:,1))
1956	call wstats(ngrid,"tslab2","tslab2","K",2,tslab(:,2))
1957	call wstats(ngrid,"pctsrf_sic","pct ice/sea","",2,pctsrf_sic)
1958	call wstats(ngrid,"tsea_ice","tsea_ice","K",2,tsea_ice)
1959	call wstats(ngrid,"sea_ice","sea ice","kg/m2",2,sea_ice)
1960	call wstats(ngrid,"rnat","nature of the surface","",2,rnat)
1961	endif
1962
1963	if(lastcall) then
1964	write (,) "Writing stats..."
1965	call mkstats(ierr)
1966	endif
1967
1968	endif ! end of 'callstats'
1969
1970	#ifndef MESOSCALE
1971
1972	!-----------------------------------------------------------------------------------------------------
1973	! OUTPUT in netcdf file "DIAGFI.NC", containing any variable for diagnostic
1974	!
1975	! Note 1 : output with period "ecritphy", set in "run.def"
1976	!
1977	! Note 2 : writediagfi can also be called from any other subroutine for any variable,
1978	! but its preferable to keep all the calls in one place ...
1979	!-----------------------------------------------------------------------------------------------------
1980
1981	call writediagfi(ngrid,"Ls","solar longitude","deg",0,zls*180./pi)
1982	call writediagfi(ngrid,"Lss","sub solar longitude","deg",0,zlss*180./pi)
1983	call writediagfi(ngrid,"RA","right ascension","deg",0,right_ascen*180./pi)
1984	call writediagfi(ngrid,"Declin","solar declination","deg",0,declin*180./pi)
1985	call writediagfi(ngrid,"tsurf","Surface temperature","K",2,tsurf)
1986	call writediagfi(ngrid,"ps","Surface pressure","Pa",2,ps)
1987	call writediagfi(ngrid,"temp","temperature","K",3,zt)
1988	call writediagfi(ngrid,"teta","potential temperature","K",3,zh)
1989	call writediagfi(ngrid,"u","Zonal wind","m.s-1",3,zu)
1990	call writediagfi(ngrid,"v","Meridional wind","m.s-1",3,zv)
1991	call writediagfi(ngrid,"w","Vertical wind","m.s-1",3,pw)
1992	call writediagfi(ngrid,"p","Pressure","Pa",3,pplay)
1993
1994	! Subsurface temperatures
1995	! call writediagsoil(ngrid,"tsurf","Surface temperature","K",2,tsurf)
1996	! call writediagsoil(ngrid,"temp","temperature","K",3,tsoil)
1997
1998	! Oceanic layers
1999	if(ok_slab_ocean) then
2000	call writediagfi(ngrid,"pctsrf_sic","pct ice/sea","",2,pctsrf_sic)
2001	call writediagfi(ngrid,"tsea_ice","tsea_ice","K",2,tsea_ice)
2002	call writediagfi(ngrid,"sea_ice","sea ice","kg/m2",2,sea_ice)
2003	call writediagfi(ngrid,"tslab1","tslab1","K",2,tslab(:,1))
2004	call writediagfi(ngrid,"tslab2","tslab2","K",2,tslab(:,2))
2005	call writediagfi(ngrid,"dt_hdiff1","dt_hdiff1","K/s",2,dt_hdiff(:,1))
2006	call writediagfi(ngrid,"dt_hdiff2","dt_hdiff2","K/s",2,dt_hdiff(:,2))
2007	call writediagfi(ngrid,"dt_ekman1","dt_ekman1","K/s",2,dt_ekman(:,1))
2008	call writediagfi(ngrid,"dt_ekman2","dt_ekman2","K/s",2,dt_ekman(:,2))
2009	call writediagfi(ngrid,"rnat","nature of the surface","",2,rnat)
2010	call writediagfi(ngrid,"sensibFlux","sensible heat flux","w.m^-2",2,sensibFlux)
2011	call writediagfi(ngrid,"latentFlux","latent heat flux","w.m^-2",2,zdqsdif(:,igcm_h2o_vap)*RLVTT)
2012	endif
2013
2014
2015	! Total energy balance diagnostics
2016	if(callrad.and.(.not.newtonian))then
2017
2018	!call writediagfi(ngrid,"ALB","Surface albedo"," ",2,albedo_equivalent)
2019	!call writediagfi(ngrid,"ALB_1st","First Band Surface albedo"," ",2,albedo(:,1))
2020	call writediagfi(ngrid,"ISR","incoming stellar rad.","W m-2",2,fluxtop_dn)
2021	call writediagfi(ngrid,"ASR","absorbed stellar rad.","W m-2",2,fluxabs_sw)
2022	call writediagfi(ngrid,"OLR","outgoing longwave rad.","W m-2",2,fluxtop_lw)
2023	call writediagfi(ngrid,"shad","rings"," ", 2, fract)
2024
2025	! call writediagfi(ngrid,"ASRcs","absorbed stellar rad (cs).","W m-2",2,fluxabs_sw1)
2026	! call writediagfi(ngrid,"OLRcs","outgoing longwave rad (cs).","W m-2",2,fluxtop_lw1)
2027	! call writediagfi(ngrid,"fluxsurfsw","sw surface flux.","W m-2",2,fluxsurf_sw)
2028	! call writediagfi(ngrid,"fluxsurflw","lw back radiation.","W m-2",2,fluxsurf_lw)
2029	! call writediagfi(ngrid,"fluxsurfswcs","sw surface flux (cs).","W m-2",2,fluxsurf_sw1)
2030	! call writediagfi(ngrid,"fluxsurflwcs","lw back radiation (cs).","W m-2",2,fluxsurf_lw1)
2031
2032	if(ok_slab_ocean) then
2033	call writediagfi(ngrid,"GND","heat flux from ground","W m-2",2,fluxgrdocean)
2034	else
2035	call writediagfi(ngrid,"GND","heat flux from ground","W m-2",2,fluxgrd)
2036	endif
2037
2038	call writediagfi(ngrid,"DYN","dynamical heat input","W m-2",2,fluxdyn)
2039
2040	endif ! end of 'callrad'
2041
2042	if(enertest) then
2043
2044	if (calldifv) then
2045
2046	call writediagfi(ngrid,"q2","turbulent kinetic energy","J.kg^-1",3,q2)
2047	call writediagfi(ngrid,"sensibFlux","sensible heat flux","w.m^-2",2,sensibFlux)
2048
2049	! call writediagfi(ngrid,"dEzdiff","turbulent diffusion heating (-sensible flux)","w.m^-2",3,dEzdiff)
2050	! call writediagfi(ngrid,"dEdiff","integrated turbulent diffusion heating (-sensible flux)","w.m^-2",2,dEdiff)
2051	! call writediagfi(ngrid,"dEdiffs","In TurbDiff (correc rad+latent heat) surf nrj change","w.m^-2",2,dEdiffs)
2052
2053	endif
2054
2055	if (corrk) then
2056	call writediagfi(ngrid,"dEzradsw","radiative heating","w.m^-2",3,dEzradsw)
2057	call writediagfi(ngrid,"dEzradlw","radiative heating","w.m^-2",3,dEzradlw)
2058	endif
2059
2060	if(watercond) then
2061
2062	call writediagfi(ngrid,"lscaledE","heat from largescale","W m-2",2,lscaledE)
2063	call writediagfi(ngrid,"madjdE","heat from moistadj","W m-2",2,madjdE)
2064	call writediagfi(ngrid,"qsatatm","atm qsat"," ",3,qsat)
2065
2066	! call writediagfi(ngrid,"lscaledEz","heat from largescale","W m-2",3,lscaledEz)
2067	! call writediagfi(ngrid,"madjdEz","heat from moistadj","W m-2",3,madjdEz)
2068	! call writediagfi(ngrid,"h2o_max_col","maximum H2O column amount","kg.m^-2",2,H2Omaxcol)
2069
2070	endif
2071
2072	endif ! end of 'enertest'
2073
2074
2075	! Temporary inclusions for heating diagnostics.
2076	!call writediagfi(ngrid,"zdtsw","SW heating","T s-1",3,zdtsw)
2077	!call writediagfi(ngrid,"zdtlw","LW heating","T s-1",3,zdtlw)
2078	!call writediagfi(ngrid,"dtrad","radiative heating","K s-1",3,dtrad)
2079	! call writediagfi(ngrid,"zdtdyn","Dyn. heating","T s-1",3,zdtdyn)
2080
2081	! For Debugging.
2082	!call writediagfi(ngrid,'rnat','Terrain type',' ',2,real(rnat))
2083	!call writediagfi(ngrid,'pphi','Geopotential',' ',3,pphi)
2084
2085
2086	! Output aerosols.
2087	if (igcm_co2_ice.ne.0.and.iaero_co2.ne.0) &
2088	call writediagfi(ngrid,'CO2ice_reff','CO2ice_reff','m',3,reffrad(1,1,iaero_co2))
2089	if (igcm_h2o_ice.ne.0.and.iaero_h2o.ne.0) &
2090	call writediagfi(ngrid,'H2Oice_reff','H2Oice_reff','m',3,reffrad(:,:,iaero_h2o))
2091	if (igcm_co2_ice.ne.0.and.iaero_co2.ne.0) &
2092	call writediagfi(ngrid,'CO2ice_reffcol','CO2ice_reffcol','um kg m^-2',2,reffcol(1,iaero_co2))
2093	if (igcm_h2o_ice.ne.0.and.iaero_h2o.ne.0) &
2094	call writediagfi(ngrid,'H2Oice_reffcol','H2Oice_reffcol','um kg m^-2',2,reffcol(1,iaero_h2o))
2095
2096	! Output tracers.
2097	if (tracer) then
2098
2099	do iq=1,nq
2100	call writediagfi(ngrid,noms(iq),noms(iq),'kg/kg',3,zq(1,1,iq))
2101	call writediagfi(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
2102	'kg m^-2',2,qsurf_hist(1,iq) )
2103	call writediagfi(ngrid,trim(noms(iq))//'_col',trim(noms(iq))//'_col', &
2104	'kg m^-2',2,qcol(1,iq) )
2105
2106	! call writediagfi(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
2107	! 'kg m^-2',2,qsurf(1,iq) )
2108
2109	if(watercond.or.CLFvarying)then
2110	call writediagfi(ngrid,"rneb_man","H2O cloud fraction (conv)"," ",3,rneb_man)
2111	call writediagfi(ngrid,"rneb_lsc","H2O cloud fraction (large scale)"," ",3,rneb_lsc)
2112	call writediagfi(ngrid,"CLF","H2O cloud fraction"," ",3,cloudfrac)
2113	call writediagfi(ngrid,"CLFt","H2O column cloud fraction"," ",2,totcloudfrac)
2114	call writediagfi(ngrid,"RH","relative humidity"," ",3,RH)
2115	endif
2116
2117	if(waterrain)then
2118	call writediagfi(ngrid,"rain","rainfall","kg m-2 s-1",2,zdqsrain)
2119	call writediagfi(ngrid,"snow","snowfall","kg m-2 s-1",2,zdqssnow)
2120	call writediagfi(ngrid,"reevap","reevaporation of precipitation","kg m-2 s-1",2,reevap_precip)
2121	endif
2122
2123	if((hydrology).and.(.not.ok_slab_ocean))then
2124	call writediagfi(ngrid,"hice","oceanic ice height","m",2,hice)
2125	endif
2126
2127	if(ice_update)then
2128	call writediagfi(ngrid,"ice_min","min annual ice","m",2,ice_min)
2129	call writediagfi(ngrid,"ice_ini","initial annual ice","m",2,ice_initial)
2130	endif
2131
2132	do ig=1,ngrid
2133	if(tau_col(ig).gt.1.e3)then
2134	print*,'WARNING: tau_col=',tau_col(ig)
2135	print*,'at ig=',ig,'in PHYSIQ'
2136	endif
2137	end do
2138
2139	call writediagfi(ngrid,"tau_col","Total aerosol optical depth","[]",2,tau_col)
2140
2141	enddo ! end of 'nq' loop
2142
2143	endif ! end of 'tracer'
2144
2145
2146	! Output spectrum.
2147	if(specOLR.and.corrk)then
2148	call writediagspecIR(ngrid,"OLR3D","OLR(lon,lat,band)","W/m^2/cm^-1",3,OLR_nu)
2149	call writediagspecVI(ngrid,"OSR3D","OSR(lon,lat,band)","W/m^2/cm^-1",3,OSR_nu)
2150	endif
2151
2152	#else
2153	comm_HR_SW(1:ngrid,1:nlayer) = zdtsw(1:ngrid,1:nlayer)
2154	comm_HR_LW(1:ngrid,1:nlayer) = zdtlw(1:ngrid,1:nlayer)
2155	comm_CLOUDFRAC(1:ngrid,1:nlayer)=cloudfrac(1:ngrid,1:nlayer)
2156	comm_TOTCLOUDFRAC(1:ngrid)=totcloudfrac(1:ngrid)
2157	comm_RAIN(1:ngrid,1:nlayer)=zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap)
2158	comm_SNOW(1:ngrid,1:nlayer)=zdqrain(1:ngrid,1:nlayer,igcm_h2o_ice)
2159	comm_ALBEQ(1:ngrid)=albedo_equivalent(1:ngrid)
2160	comm_FLUXTOP_DN(1:ngrid)=fluxtop_dn(1:ngrid)
2161	comm_FLUXABS_SW(1:ngrid)=fluxabs_sw(1:ngrid)
2162	comm_FLUXTOP_LW(1:ngrid)=fluxtop_lw(1:ngrid)
2163	comm_FLUXSURF_SW(1:ngrid)=fluxsurf_sw(1:ngrid)
2164	comm_FLUXSURF_LW(1:ngrid)=fluxsurf_lw(1:ngrid)
2165	comm_FLXGRD(1:ngrid)=fluxgrd(1:ngrid)
2166	comm_LSCEZ(1:ngrid,1:nlayer)=lscaledEz(1:ngrid,1:nlayer)
2167	comm_H2OICE_REFF(1:ngrid,1:nlayer)=reffrad(1:ngrid,1:nlayer,iaero_h2o)
2168	sensibFlux(1:ngrid) = zflubid(1:ngrid) - capcal(1:ngrid)*zdtsdif(1:ngrid) !!! ????
2169	#endif
2170
2171	! XIOS outputs
2172	#ifdef CPP_XIOS
2173	! Send fields to XIOS: (NB these fields must also be defined as
2174	! <field id="..." /> in context_lmdz_physics.xml to be correctly used)
2175	CALL send_xios_field("ls",zls)
2176
2177	CALL send_xios_field("ps",ps)
2178	CALL send_xios_field("area",cell_area)
2179
2180	CALL send_xios_field("temperature",zt)
2181	CALL send_xios_field("u",zu)
2182	CALL send_xios_field("v",zv)
2183	CALL send_xios_field("omega",omega)
2184
2185	CALL send_xios_field("ISR",fluxtop_dn)
2186	CALL send_xios_field("OLR",fluxtop_lw)
2187
2188	if (lastcall.and.is_omp_master) then
2189	write(,) "physiq: call xios_context_finalize"
2190	call xios_context_finalize
2191	endif
2192	#endif
2193
2194	icount=icount+1
2195
2196	end subroutine physiq
2197
2198	end module physiq_mod

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