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source: trunk/LMDZ.COMMON/makelmdz_fcm @ 1793

Last change on this file since 1793 was 1793, checked in by jvatant, 7 years ago

Making Titan's hazy again, part I
+ Added the source folder libf/muphytitan which contains

YAMMS ( Titan's microphysical model ) from J. Burgalat

+ Modif. compilation files linked to this change
JVO

File size: 22.2 KB

Line
1	#!/bin/bash
2	# $Id: makelmdz_fcm 1615 2012-02-10 15:42:26Z emillour $
3	# This is a script in Bash.
4
5	# FH : on ne crée plus le fichier arch.mk qui est supposé exister par
6	# FH : ailleurs.
7	# FH : ulterieurement, ce fichier sera pré-existant pour une série
8	# FH : de configurations en versions optimisées et debug qui seront
9	# FH : liés (ln -s) avec arch.mk en fonction de l'architecture.
10	# FH : Pour le moment, cette version est en test et on peut créer les
11	# FH : arch.mk en lançant une première fois makegcm.
12	#
13	##set -x
14	########################################################################
15	# options par defaut pour la commande make
16	########################################################################
17
18	dim="96x72x19"
19	physique=lmd
20	filtre=filtrez
21	grille=reg
22	couple=false
23	veget=false
24	sisvat=false
25	rrtm=false
26	dust=false
27	strataer=false
28	chimie=false
29	chemistry=false
30	parallel=none
31	paramem="par"
32	compil_mod=prod
33	io=ioipsl
34	LIBPREFIX=""
35	cosp=false
36	bands=""
37	scatterers=""
38	job=1
39	full=''
40	libphy=false
41
42	arch_defined="FALSE"
43	arch_path="arch"
44	arch_default_path="arch"
45
46	LMDGCM=`/bin/pwd`
47	LIBOGCM=$LMDGCM/libo
48	LIBFGCM=$LMDGCM/libf
49	DYN_COMMON_PATH=$LIBFGCM/dyn3d_common
50	# path for optional packages, but default set to ".void_dir"
51	FILTRE_PATH=$LMDGCM/.void_dir
52	DYN_PHYS_PATH=$LMDGCM/.void_dir
53	DYN_PHYS_SUB_PATH=$LMDGCM/.void_dir
54	PHY_COMMON_PATH=$LMDGCM/.void_dir
55	RRTM_PATH=$LMDGCM/.void_dir
56	DUST_PATH=$LMDGCM/.void_dir
57	STRATAER_PATH=$LMDGCM/.void_dir
58	SISVAT_PATH=$LMDGCM/.void_dir
59	COSP_PATH=$LMDGCM/.void_dir
60	CHEM_PATH=$LMDGCM/.void_dir
61	CLOUD_PATH=$LMDGCM/.void_dir
62	MUPHY_PATH=$LMDGCM/.void_dir
63	AERONO_PATH=$LMDGCM/.void_dir
64	# Path to fcm utility:
65	##fcm_path=$LMDGCM/tools/fcm/bin
66	fcm_path=$(dirname $(which fcm))
67
68	########################################################################
69	# Quelques initialisations de variables du shell.
70	########################################################################
71
72	CPP_KEY=""
73	INCLUDE=""
74	LIB=""
75	adjnt=""
76	COMPIL_FFLAGS="%PROD_FFLAGS"
77	PARA_FFLAGS=""
78	PARA_LD=""
79	EXT_SRC=""
80
81	########################################################################
82	# lecture des options de mymake
83	########################################################################
84
85	while (($# > 0))
86	do
87	case $1 in
88	"-h") cat <<fin
89	Usage :
90	makegcm [options] -arch arch exec
91	[-h] : brief help
92	[-d [[IMx]JMx]LM] : IM, JM, LM are the dimensions in x, y, z (default: $dim)
93	[-s nscat] : (Generic) Number of radiatively active scatterers
94	[-b IRxVIS] : (Generic) Number of infrared (IR) and visible (VIS) bands for radiative transfer
95	[-p PHYS] : set of physical parametrizations (in libf/phyPHYS), (default: lmd)
96	[-prod / -dev / -debug] : compilation mode production (default) / developement / debug .
97	[-c false/MPI1/OMCT] : (Earth) coupling with ocean model : MPI1/OMCT/false (default: false)
98	[-v false/orchidee2.0/orchidee1.9/true] : (Earth) version of the vegetation model to include (default: false)
99	false : no vegetation model
100	orchidee2.0 : compile using ORCHIDEE 2.0 (or more recent version)
101	orchidee1.9 : compile using ORCHIDEE up to the version including OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6
102	true : (obsolete; for backward compatibility) use ORCHIDEE tag 1.9-1.9.6
103	[-chimie INCA/false] : (Earth) with INCA chemistry model or without (default: false)
104	[-cosp cosp/false] : (Earth) add the cosp model (default: false)
105	[-sisvat true/false] : (Earth) compile with/without sisvat package (default: false)
106	[-rrtm true/false] : (Earth) compile with/without rrtm package (default: false)
107	[-dust true/false] : (Earth) compile with/without the dust package by Boucher and co (default: false)
108	[-strataer true/false] : (Earth) compile with/without the strat aer package by Boucher and co (default: false)
109	[-parallel none/mpi/omp/mpi_omp] : parallelism (default: none) : mpi, openmp or mixted mpi_openmp
110	[-g GRI] : grid configuration in dyn3d/GRI_xy.h (default: reg, inclues a zoom)
111	[-io ioipsl/mix/xios] : Input/Output library (default: ioipsl)
112	[-include INCLUDES] : extra include path to add
113	[-cpp CPP_KEY] : additional preprocessing definitions
114	[-adjnt] : adjoint model, not operational ...
115	[-mem] : reduced memory dynamics (if in parallel mode)
116	[-filtre NOMFILTRE] : use filtre from libf/NOMFILTRE (default: filtrez)
117	[-link LINKS] : additional links with other libraries
118	[-j n] : active parallel compiling on ntask
119	[-full] : full (re-)compilation (from scratch)
120	[-fcm_path path] : path to the fcm tool (default: tools/fcm/bin)
121	[-ext_src path] : path to an additional set of routines to compile with the model
122	[-arch_path path] : path to architecture files (default: $arch_default_path)
123	-arch arch : target architecture
124	exec : executable to build
125	fin
126	exit;;
127
128	"-d")
129	dim=$2 ; shift ; shift ;;
130
131	"-p")
132	physique="$2" ; shift ; shift ;;
133
134	"-s")
135	scatterers=$2 ; shift ; shift ;;
136
137	"-b")
138	bands=$2 ; shift ; shift ;;
139
140	"-g")
141	grille="$2" ; shift ; shift ;;
142
143	"-c")
144	couple="$2" ; shift ; shift ;;
145
146	"-prod")
147	compil_mod="prod" ; shift ;;
148
149	"-dev")
150	compil_mod="dev" ; shift ;;
151
152	"-debug")
153	compil_mod="debug" ; shift ;;
154
155	"-io")
156	io="$2" ; shift ; shift ;;
157
158	"-v")
159	veget="$2" ; shift ; shift ;;
160
161	"-sisvat")
162	sisvat="$2" ; shift ; shift ;;
163
164	"-rrtm")
165	rrtm="$2" ; shift ; shift ;;
166
167	"-dust")
168	dust="$2" ; shift ; shift ;;
169
170	"-strataer")
171	strataer="$2" ; shift ; shift ;;
172
173	"-chimie")
174	chimie="$2" ; shift ; shift ;;
175
176	"-parallel")
177	parallel="$2" ; shift ; shift ;;
178
179	"-include")
180	INCLUDE="$INCLUDE -I$2" ; shift ; shift ;;
181
182	"-cpp")
183	CPP_KEY="$CPP_KEY $2" ; shift ; shift ;;
184
185	"-adjnt")
186	echo "not operational ... work to be done here ";exit
187	opt_dep="$opt_dep adjnt" ; adjnt="-ladjnt -ldyn3d "
188	optim="$optim -Dadj" ; shift ;;
189
190	"-cosp")
191	cosp="$2" ; shift ; shift ;;
192
193	"-mem")
194	paramem="mem" ; shift ;;
195
196	"-filtre")
197	filtre=$2 ; shift ; shift ;;
198
199	"-link")
200	LIB="$LIB $2" ; shift ; shift ;;
201
202	"-fcm_path")
203	fcm_path=$2 ; shift ; shift ;;
204
205	"-ext_src")
206	EXT_SRC=$2 ; shift ; shift ;;
207
208	"-j")
209	job=$2 ; shift ; shift ;;
210
211	"-full")
212	full="-full" ; shift ;;
213
214	"-libphy")
215	libphy="true" ; shift ;;
216
217	"-arch")
218	arch=$2 ; arch_defined="TRUE" ; shift ; shift ;;
219
220	"-arch_path")
221	arch_path=$2 ; arch_path_defined="TRUE"; shift ; shift ;;
222
223	*)
224	code="$1" ; shift ;;
225	esac
226	done
227
228	###############################################################
229	# path to fcm
230	###############################################################
231	# handle case when provided path to fcm was given as a relative
232	# path (from makelmdz_fcm script directory) and not an absolute path
233	if [[ ${fcm_path:0:1} != "/" ]] ; then
234	# prepend with makelmdz_fcm location
235	fcm_path=$(cd $(dirname $0) ; pwd)"/"${fcm_path}
236	fi
237
238	# add fcm_path to PATH
239	export PATH=${fcm_path}:${PATH}
240
241	echo "Path to fcm:"
242	echo ${fcm_path}
243
244	###############################################################
245	# lecture des chemins propres à l'architecture de la machine #
246	###############################################################
247	rm -f .void_file
248	echo > .void_file
249	rm -rf .void_dir
250	mkdir .void_dir
251
252	if [[ "$arch_defined" == "TRUE" ]]
253	then
254	rm -f arch.path
255	rm -f arch.fcm
256	rm -f arch.env
257
258	if test -f $arch_path/arch-${arch}.path
259	then
260	ln -s $arch_path/arch-${arch}.path arch.path
261	elif test -f $arch_default_path/arch-${arch}.path
262	then
263	ln -s $arch_default_path/arch-${arch}.path arch.path
264	fi
265
266	if test -f $arch_path/arch-${arch}.fcm
267	then
268	ln -s $arch_path/arch-${arch}.fcm arch.fcm
269	elif test -f $arch_default_path/arch-${arch}.fcm
270	then
271	ln -s $arch_default_path/arch-${arch}.fcm arch.fcm
272	fi
273
274	if test -f $arch_path/arch-${arch}.env
275	then
276	ln -s $arch_path/arch-${arch}.env arch.env
277	elif test -f $arch_default_path/arch-${arch}.env
278	then
279	ln -s $arch_default_path/arch-${arch}.env arch.env
280	else
281	ln -s .void_file arch.env
282	fi
283	# source architecture PATH and ENV files
284	source arch.env
285	source arch.path
286	else
287	echo "You must define a target architecture"
288	exit 1
289	fi
290
291	########################################################################
292	# Definition des clefs CPP, des chemins des includes et modules
293	# et des libraries
294	########################################################################
295
296	if [[ "$compil_mod" == "prod" ]]
297	then
298	COMPIL_FFLAGS="%PROD_FFLAGS"
299	elif [[ "$compil_mod" == "dev" ]]
300	then
301	COMPIL_FFLAGS="%DEV_FFLAGS"
302	elif [[ "$compil_mod" == "debug" ]]
303	then
304	COMPIL_FFLAGS="%DEBUG_FFLAGS"
305	fi
306
307	phys_root=$physique
308	if [[ "${physique:0:3}" == "lmd" ]] ; then phys_root=lmd ; fi
309	if [[ "${physique:0:3}" == "mar" ]] ; then phys_root=mar ; fi
310	if [[ "${physique:0:4}" == "mars" ]] ; then phys_root=mars ; fi
311	if [[ "${physique:0:3}" == "std" ]] ; then phys_root=std ; fi
312	if [[ "${physique:0:5}" == "venus" ]] ; then phys_root=venus ; fi
313	if [[ "${physique:0:5}" == "titan" ]] ; then phys_root=titan ; fi
314	if [[ "${physique:0:3}" == "dev" ]] ; then phys_root=dev ; fi
315
316	if [[ "$physique" != "nophys" ]]
317	then
318	#We'll use some physics
319	CPP_KEY="$CPP_KEY CPP_PHYS"
320	if [[ "${phys_root}" == "lmd" ]]
321	then
322	#For lmd physics, default planet type is Earth
323	CPP_KEY="$CPP_KEY CPP_EARTH"
324	fi
325	# set physics common utilities path
326	PHY_COMMON_PATH="${LIBFGCM}/phy_common"
327	# set the dyn/phys interface path
328	DYN_PHYS_PATH="${LIBFGCM}/dynphy_lonlat"
329	DYN_PHYS_SUB_PATH="${LIBFGCM}/dynphy_lonlat/phy${phys_root}"
330	fi
331
332	if [[ "$filtre" == "filtrez" ]]
333	then
334	FILTRE_PATH=${LIBFGCM}/$filtre
335	fi
336
337	if [[ "$chimie" == "INCA" ]]
338	then
339	CPP_KEY="$CPP_KEY INCA"
340	INCLUDE="$INCLUDE -I${INCA_INCDIR}"
341	LIB="$LIB -L${INCA_LIBDIR} ${INCA_LIB}"
342	fi
343
344	if [[ "$couple" != "false" ]]
345	then
346	if [[ "$couple" == "MPI1" ]]
347	then
348	CPP_KEY="$CPP_KEY CPP_COUPLE"
349	export OASIS_INCDIR=$LMDGCM/../../prism/X64/build/lib/psmile.MPI1
350	export OASIS_LIBDIR=$LMDGCM/../../prism/X64/lib
351	INCLUDE="$INCLUDE -I${OASIS_INCDIR}"
352	LIB="$LIB -L${OASIS_LIBDIR} ${OASIS_LIB}"
353	else
354	CPP_KEY="$CPP_KEY CPP_COUPLE CPP_OMCT"
355	INCLUDE="$INCLUDE -I${OASIS_INCDIR}"
356	LIB="$LIB -L${OASIS_LIBDIR} ${OASIS_LIB}"
357	fi
358	fi
359
360	if [[ "$parallel" != "none" && \
361	( "$code" == "newstart" \|\| "$code" == "start2archive" ) ]]
362	then
363	echo "newstart or start2archive utilities should be run in serial!"
364	echo " Compile without -parallel [mpi\|omp\|mpi_omp] option!"
365	exit
366	fi
367
368	if [[ "$parallel" == "mpi" ]]
369	then
370	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI"
371	PARA_FFLAGS="%MPI_FFLAGS"
372	PARA_LD="%MPI_LD"
373	elif [[ "$parallel" == "omp" ]]
374	then
375	CPP_KEY="$CPP_KEY CPP_PARA CPP_OMP"
376	PARA_FFLAGS="%OMP_FFLAGS"
377	PARA_LD="%OMP_LD"
378	elif [[ "$parallel" == "mpi_omp" ]]
379	then
380	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI CPP_OMP"
381	PARA_FFLAGS="%MPI_FFLAGS %OMP_FFLAGS"
382	PARA_LD="%MPI_LD %OMP_LD"
383	fi
384
385	if [[ ( "$parallel" == "omp" \|\| "$parallel" == "mpi_omp" ) \
386	&& "$compil_mod" == "debug" ]]
387	then
388	echo "Usually, parallelization with OpenMP requires some optimization."
389	echo "We suggest switching to \"-dev\"."
390	fi
391
392	if [ "$veget" = "true" -o "$veget" = "orchidee1.9" -o "$veget" = "orchidee2.0" ]
393	then
394	#NB: option 'true': for backward compatibility. To be used with ORCHIDEE tag 1.9-1.9.6
395	# For this case, cpp flag ORCHIDEE_NOOPENMP must be added to the makelmdz_fcm arguments
396	# option orchidee1.9 : Compile with ORCHIDEE version up to the inclusion of OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6
397	INCLUDE="${INCLUDE} ${ORCHIDEE_INCDIR}"
398	CPP_KEY="$CPP_KEY CPP_VEGET"
399	# temporary, for Orchidee versions 1.9.* (before openmp activation)
400	if [[ "$veget" == "orchidee1.9" ]] ; then
401	CPP_KEY="$CPP_KEY ORCHIDEE_NOOPENMP"
402	fi
403	if [[ "$veget" == "orchidee2.0" ]] ; then
404	orch_libs="sechiba parameters stomate parallel orglob orchidee"
405	else
406	orch_libs="sechiba parameters stomate parallel orglob"
407	fi
408	LIB="${LIB} -L${ORCHIDEE_LIBDIR} ${ORCHIDEE_LIB}"
409	elif [[ "$veget" != "false" ]] ; then
410	echo "Option -v $veget does not exist"
411	echo "Use ./makelmdz_fcm -h for more information"
412	exit
413	fi
414
415	if [[ "$sisvat" == "true" ]]
416	then
417	CPP_KEY="$CPP_KEY CPP_SISVAT"
418	SISVAT_PATH="$LIBFGCM/%PHYS/sisvat"
419	fi
420
421	if [[ "$rrtm" == "true" ]]
422	then
423	CPP_KEY="$CPP_KEY CPP_RRTM"
424	RRTM_PATH="$LIBFGCM/%PHYS/rrtm"
425	fi
426
427	if [[ "$dust" == "true" ]]
428	then
429	CPP_KEY="$CPP_KEY CPP_Dust"
430	DUST_PATH="$LIBFGCM/%PHYS/Dust"
431	fi
432
433	if [[ "$strataer" == "true" ]]
434	then
435	CPP_KEY="$CPP_KEY CPP_StratAer"
436	STRATAER_PATH="$LIBFGCM/%PHYS/StratAer"
437	fi
438
439	if [[ $io == ioipsl ]]
440	then
441	CPP_KEY="$CPP_KEY CPP_IOIPSL"
442	INCLUDE="$INCLUDE ${IOIPSL_INCDIR}"
443	LIB="$LIB ${IOIPSL_LIBDIR} ${IOIPSL_LIB}"
444	elif [[ $io == mix ]]
445	then
446	# For now, xios implies also using ioipsl
447	CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS"
448	INCLUDE="$INCLUDE ${IOIPSL_INCDIR} ${XIOS_INCDIR}"
449	LIB="$LIB ${IOIPSL_LIBDIR} ${IOIPSL_LIB} ${XIOS_LIBDIR} ${XIOS_LIB}"
450	elif [[ $io == xios ]]
451	then
452	# For now, xios implies also using ioipsl
453	CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS CPP_IOIPSL_NO_OUTPUT"
454	INCLUDE="$INCLUDE ${IOIPSL_INCDIR} ${XIOS_INCDIR}"
455	LIB="$LIB ${IOIPSL_LIBDIR} ${IOIPSL_LIB} ${XIOS_LIBDIR} ${XIOS_LIB}"
456	fi
457
458	if [[ "$cosp" == "true" ]]
459	then
460	CPP_KEY="$CPP_KEY CPP_COSP"
461	COSP_PATH="$LIBFGCM/cosp"
462	# LIB="${LIB} -l${LIBPREFIX}cosp"
463	fi
464
465	# for Titan (but could be used by others as well), there is also "chimtitan"
466	if [[ -d ${LIBFGCM}/chim${physique} ]]
467	then
468	CHEM_PATH="${LIBFGCM}/chim${physique}"
469	INCLUDE="$INCLUDE -I${LIBFGCM}/chim${physique}"
470	fi
471
472	# for Titan add microphysics dependencies
473	if [[ -d ${LIBFGCM}/muphy${physique} ]] ; then
474
475	# add muphy{physique} to the list of files to compile.
476	MUPHY_PATH="${LIBFGCM}/muphy${physique}"
477	# For Titan as we embbed some libraries with CPP keys, we define them:
478	# -DPREC={32\|64\|80} real kind precision (32: simple, 64: double, 80: extended double)
479	# -DHAVE_NC_FTN=1 (mandatory: for support of NetCDF in lintnd).
480	CPP_KEY="$CPP_KEY PREC=64 HAVE_NC_FTN=1"
481	if [[ "${physique}" == "titan" ]] ; then
482	echo "Yaahh you're about to use YAMMS in a GCM..."
483	fi
484	fi
485
486	# for Venus (but could be used by others as well), there is also "phyvenus/cloudvenus"
487	if [[ -d ${LIBFGCM}/phy${physique}/cloud${physique} ]]
488	then
489	CLOUD_PATH="${LIBFGCM}/phy${physique}/cloud${physique}"
490	INCLUDE="$INCLUDE -I${LIBFGCM}/phy${physique}/cloud${physique}"
491	fi
492
493	# for Mars (but could be used by others as well), there is also "aeronomars"
494	if [[ -d ${LIBFGCM}/aerono${physique} ]]
495	then
496	AERONO_PATH="${LIBFGCM}/aerono${physique}"
497	INCLUDE="$INCLUDE -I${LIBFGCM}/aerono${physique}"
498	fi
499
500	# NETCDF library include/library paths
501	INCLUDE="$INCLUDE ${NETCDF_INCDIR}"
502	LIB="$LIB ${NETCDF_LIBDIR} ${NETCDF_LIB}"
503
504	########################################################################
505	# calcul du nombre de dimensions
506	########################################################################
507
508
509	dim_full=$dim
510	dim=`echo $dim \| sed -e 's/[^0-9]/ /g'`
511	set $dim
512	dimc=$#
513	echo calcul de la dimension
514	echo dim $dim
515	echo dimc $dimc
516
517
518	########################################################################
519	# Gestion des dimensions du modele.
520	# on cree ou remplace le fichier des dimensions
521	########################################################################
522
523	cd $LIBFGCM/grid
524	if [[ -f dimensions.h ]]
525	then
526	echo 'ATTENTION: vous etes sans doute en train de compiler le modele par ailleurs'
527	echo "Attendez que la premiere compilation soit terminee pour relancer la suivante."
528	echo "Si vous etes sur que vous ne compilez pas le modele par ailleurs,"
529	echo vous pouvez continuer en repondant oui.
530	echo "Voulez-vous vraiment continuer?"
531	echo ""
532	echo "WARNING: you are probably already compiling the model somewhere else."
533	echo "Wait until the first compilation is finished before launching this one."
534	echo "If you are sure that you are not compiling elsewhere, just answer "
535	echo "yes (or 'oui') to the question below to proceed."
536	echo "Do you wish to continue?"
537	read reponse
538	if [[ $reponse == "oui" \|\| $reponse == "yes" ]]
539	then
540	\rm -f $LIBFGCM/grid/dimensions.h
541	else
542	exit
543	fi
544	fi
545
546
547	cd $LIBFGCM/grid/dimension
548	./makdim $dim
549	if (($? != 0))
550	then
551	exit 1
552	fi
553
554	cat $LIBFGCM/grid/dimensions.h
555	cd $LMDGCM
556
557	if [[ "$bands" != "" ]]
558	then
559	# Generic model, recreate bands.h (IR & VIS bands for radiative transfer)
560	bands=$(echo $bands \| sed -e 's/[^0-9]/ /g')
561	cd $LIBFGCM/phy$physique/bands
562	./makbands $bands
563	cat $LIBFGCM/phy$physique/bands.h
564	cd $LMDGCM
565	fi
566
567	if [[ "$scatterers" != "" ]]
568	then
569	# Generic model, recreate scatterers.h
570	cd $LIBFGCM/phy$physique/scatterers
571	./make_scatterers $scatterers
572	cat $LIBFGCM/phy$physique/scatterers.h
573	cd $LMDGCM
574	fi
575
576
577	########################################################################
578	# Differentes dynamiques (3d, 2d, 1d)
579	########################################################################
580
581	dimension=`echo $dim \| wc -w`
582	echo dimension $dimension
583
584	if (( $dimension == 3 ))
585	then
586	cd $LIBFGCM/grid
587	\rm fxyprim.h
588	cp -p fxy_${grille}.h fxyprim.h
589	#else
590	# echo "Probleme dans les dimensions de la dynamique !!"
591	# echo "Non reactive pour l'instant !!!"
592	fi
593
594	if (( $dimension == 1 ))
595	then
596	## Sanity check: 1D models should be used in serial
597	if [[ $parallel != "none" ]]
598	then
599	echo "Error: a 1D model should not be compiled with "
600	echo " -parallel [mpi\|omp\|mpi_omp] option!"
601	exit
602	fi
603	CPP_KEY="$CPP_KEY CPP_1D"
604	##in 1D, add dyn3d to include path (because main prog is in physics)
605	INCLUDE="$INCLUDE -Ilibf/dyn3d -Ilibf/dyn3d_common"
606	## no filtre in 1d:
607	FILTRE_PATH=$LMDGCM/.void_dir
608	## no need to compile all routines in dyn3d_common either:
609	DYN_COMMON_PATH=$LMDGCM/.void_dir
610	## no need to compile all routines in dynlmdz_phy... ;
611	## (because key ones are included in 1D main program)
612	DYN_PHYS_PATH=$LMDGCM/.void_dir
613	DYN_PHYS_SUB_PATH=$LMDGCM/.void_dir
614	fi
615
616	######################################################################
617	# Traitement special pour le nouveau rayonnement de Laurent Li.
618	# ---> YM desactive pour le traitemement en parallele
619	######################################################################
620
621	#if [[ -f $libf/phy$physique/raddim.h ]]
622	#then
623	# if [[ -f $libf/phy$physique/raddim.$dimh.h ]]
624	#then
625	# \rm -f $libf/phy$physique/raddim.h
626	# cp -p $libf/phy$physique/raddim.$dimh.h $libf/phy$physique/raddim.h
627	# echo $libf/phy$physique/raddim.$dimh.h
628	# cat $libf/phy$physique/raddim.h
629	# else
630	# echo On peut diminuer la taille de l executable en creant
631	# echo le fichier $libf/phy$physique/raddim.$dimh.h
632	# \cp -p $libf/phy$physique/raddim.defaut.h $libf/phy$physique/raddim.h
633	# fi
634	#fi
635
636	######################################################################
637	# Gestion du filtre qui n'existe qu'en 3d.
638	######################################################################
639
640	if (( `expr $dimc \> 2` == 1 ))
641	then
642	filtre="FILTRE=$filtre"
643	else
644	filtre="FILTRE= L_FILTRE= "
645	fi
646	echo MACRO FILTRE $filtre
647
648	echo $dimc
649
650
651
652	######################################################################
653	# Creation du suffixe de la configuration
654	######################################################################
655
656
657	SUFF_NAME=_${dim_full}
658	SUFF_NAME=${SUFF_NAME}_phy${physique}
659
660	if [[ "$parallel" != "none" ]]
661	then
662	SUFF_NAME=${SUFF_NAME}_para
663	DYN=dyn${dimc}d${paramem}
664	if [[ "$paramem" == "mem" ]]
665	then
666	SUFF_NAME=${SUFF_NAME}_${paramem}
667	fi
668	else
669	SUFF_NAME=${SUFF_NAME}_seq
670	if (( $dimension == 1 ))
671	then
672	# dynamics-related routines in"dyn1d" subdirectory of phy${physique}
673	DYN=phy${physique}/dyn1d
674	else
675	DYN=dyn${dimc}d
676	fi
677	fi
678
679	if [[ $veget != "false" ]]
680	then
681	SUFF_NAME=${SUFF_NAME}_orch
682	fi
683
684	if [[ $couple != "false" ]]
685	then
686	SUFF_NAME=${SUFF_NAME}_couple
687	fi
688
689	if [[ $chimie == "INCA" ]]
690	then
691	SUFF_NAME=${SUFF_NAME}_inca
692	fi
693
694	if [[ $libphy == "true" ]]
695	then
696	# special case where we compile only the physics
697	DYN=$LMDGCM/.void_dir
698	DYN_COMMON_PATH=$LMDGCM/.void_dir
699	FILTRE_PATH=$LMDGCM/.void_dir
700	DYN_PHYS_PATH=$LMDGCM/.void_dir
701	DYN_PHYS_SUB_PATH=$LMDGCM/.void_dir
702	#and there is no main program to generate
703	code=""
704	SUFF_NAME=""
705	else
706	SUFF_NAME=${SUFF_NAME}.e
707	fi
708
709	cd $LMDGCM
710	config_fcm="config.fcm"
711	rm -f $config_fcm
712	touch $config_fcm
713	rm -f bin/${code}${SUFF_NAME}.e
714	rm -f arch.fcm
715	rm -f arch.opt
716
717	echo "%ARCH $arch" >> $config_fcm
718	echo "%INCDIR $INCLUDE" >> $config_fcm
719	echo "%LIB $LIB" >> $config_fcm
720	echo "%ROOT_PATH $PWD" >> $config_fcm
721	echo "%LIBF $LIBFGCM" >> $config_fcm
722	echo "%LIBO $LIBOGCM" >> $config_fcm
723	echo "%DYN $DYN" >> $config_fcm
724	echo "%DYN_COMMON $DYN_COMMON_PATH" >> $config_fcm
725	echo "%PHY_COMMON $PHY_COMMON_PATH" >> $config_fcm
726	echo "%FILTRE $FILTRE_PATH" >> $config_fcm
727	echo "%PHYS phy${physique}" >> $config_fcm
728	echo "%DYN_PHYS $DYN_PHYS_PATH" >> $config_fcm
729	echo "%DYN_PHYS_SUB $DYN_PHYS_SUB_PATH" >> $config_fcm
730	echo "%RRTM $RRTM_PATH" >> $config_fcm
731	echo "%DUST $DUST_PATH" >> $config_fcm
732	echo "%STRATAER $STRATAER_PATH" >> $config_fcm
733	echo "%SISVAT $SISVAT_PATH" >> $config_fcm
734	echo "%COSP $COSP_PATH" >> $config_fcm
735	echo "%CHEM $CHEM_PATH" >> $config_fcm
736	echo "%CLOUD $CLOUD_PATH" >> $config_fcm
737	echo "%MUPHY $MUPHY_PATH" >> $config_fcm
738	echo "%AERONO $AERONO_PATH" >> $config_fcm
739	echo "%CPP_KEY $CPP_KEY" >> $config_fcm
740	echo "%EXEC $code" >> $config_fcm
741	echo "%SUFF_NAME $SUFF_NAME" >> $config_fcm
742	echo "%COMPIL_FFLAGS $COMPIL_FFLAGS" >> $config_fcm
743	echo "%PARA_FFLAGS $PARA_FFLAGS" >> $config_fcm
744	echo "%PARA_LD $PARA_LD" >> $config_fcm
745	echo "%EXT_SRC $EXT_SRC" >> $config_fcm
746
747
748
749	ln -s arch/arch-${arch}.fcm arch.fcm
750	if test -f arch/arch-${arch}.opt && [ $compil_mod = "prod" ]
751	then
752	ln -s arch/arch-${arch}.opt arch.opt
753	else
754	ln -s .void_file arch.opt
755	fi
756
757
758	rm -f $LIBOGCM/${arch}${SUFF_NAME}/.config/fcm.bld.lock
759	./build_gcm ${fcm_path} -j $job $full
760
761	rm -rf tmp_src
762	rm -rf config
763	ln -s $LIBOGCM/${arch}${SUFF_NAME}/.config config
764	ln -s $LIBOGCM/${arch}${SUFF_NAME}/.config/ppsrc tmp_src
765
766
767	if [[ -r $LIBFGCM/grid/dimensions.h ]]
768	then
769	# Cleanup: remove dimension.h file
770	\rm -f $LIBFGCM/grid/dimensions.h
771	fi

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