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source: trunk/LMDZ.COMMON/makelmdz_fcm @ 1818

Last change on this file since 1818 was 1793, checked in by jvatant, 8 years ago

Making Titan's hazy again, part I
+ Added the source folder libf/muphytitan which contains

YAMMS ( Titan's microphysical model ) from J. Burgalat

+ Modif. compilation files linked to this change
JVO

File size: 22.2 KB

Rev	Line
[1]	1	#!/bin/bash
[847]	2	# $Id: makelmdz_fcm 1615 2012-02-10 15:42:26Z emillour $
[1]	3	# This is a script in Bash.
	4
	5	# FH : on ne crée plus le fichier arch.mk qui est supposé exister par
	6	# FH : ailleurs.
	7	# FH : ulterieurement, ce fichier sera pré-existant pour une série
	8	# FH : de configurations en versions optimisées et debug qui seront
	9	# FH : liés (ln -s) avec arch.mk en fonction de l'architecture.
	10	# FH : Pour le moment, cette version est en test et on peut créer les
	11	# FH : arch.mk en lançant une première fois makegcm.
	12	#
	13	##set -x
	14	########################################################################
	15	# options par defaut pour la commande make
	16	########################################################################
	17
	18	dim="96x72x19"
	19	physique=lmd
	20	filtre=filtrez
	21	grille=reg
	22	couple=false
	23	veget=false
[1300]	24	sisvat=false
[1302]	25	rrtm=false
[1650]	26	dust=false
	27	strataer=false
[1]	28	chimie=false
[895]	29	chemistry=false
[1]	30	parallel=none
[979]	31	paramem="par"
[1]	32	compil_mod=prod
	33	io=ioipsl
	34	LIBPREFIX=""
	35	cosp=false
[957]	36	bands=""
	37	scatterers=""
[1019]	38	job=1
	39	full=''
[1540]	40	libphy=false
[1]	41
[1650]	42	arch_defined="FALSE"
	43	arch_path="arch"
	44	arch_default_path="arch"
	45
[1]	46	LMDGCM=`/bin/pwd`
	47	LIBOGCM=$LMDGCM/libo
	48	LIBFGCM=$LMDGCM/libf
[1403]	49	DYN_COMMON_PATH=$LIBFGCM/dyn3d_common
[895]	50	# path for optional packages, but default set to ".void_dir"
[1403]	51	FILTRE_PATH=$LMDGCM/.void_dir
	52	DYN_PHYS_PATH=$LMDGCM/.void_dir
	53	DYN_PHYS_SUB_PATH=$LMDGCM/.void_dir
[1521]	54	PHY_COMMON_PATH=$LMDGCM/.void_dir
[1302]	55	RRTM_PATH=$LMDGCM/.void_dir
[1650]	56	DUST_PATH=$LMDGCM/.void_dir
	57	STRATAER_PATH=$LMDGCM/.void_dir
[1302]	58	SISVAT_PATH=$LMDGCM/.void_dir
[1]	59	COSP_PATH=$LMDGCM/.void_dir
[895]	60	CHEM_PATH=$LMDGCM/.void_dir
[1661]	61	CLOUD_PATH=$LMDGCM/.void_dir
[1793]	62	MUPHY_PATH=$LMDGCM/.void_dir
[1107]	63	AERONO_PATH=$LMDGCM/.void_dir
[895]	64	# Path to fcm utility:
[1019]	65	##fcm_path=$LMDGCM/tools/fcm/bin
	66	fcm_path=$(dirname $(which fcm))
[1]	67
	68	########################################################################
	69	# Quelques initialisations de variables du shell.
	70	########################################################################
	71
	72	CPP_KEY=""
	73	INCLUDE=""
	74	LIB=""
	75	adjnt=""
	76	COMPIL_FFLAGS="%PROD_FFLAGS"
	77	PARA_FFLAGS=""
	78	PARA_LD=""
	79	EXT_SRC=""
	80
	81	########################################################################
	82	# lecture des options de mymake
	83	########################################################################
	84
	85	while (($# > 0))
	86	do
	87	case $1 in
	88	"-h") cat <<fin
	89	Usage :
[957]	90	makegcm [options] -arch arch exec
	91	[-h] : brief help
	92	[-d [[IMx]JMx]LM] : IM, JM, LM are the dimensions in x, y, z (default: $dim)
	93	[-s nscat] : (Generic) Number of radiatively active scatterers
	94	[-b IRxVIS] : (Generic) Number of infrared (IR) and visible (VIS) bands for radiative transfer
	95	[-p PHYS] : set of physical parametrizations (in libf/phyPHYS), (default: lmd)
	96	[-prod / -dev / -debug] : compilation mode production (default) / developement / debug .
[1650]	97	[-c false/MPI1/OMCT] : (Earth) coupling with ocean model : MPI1/OMCT/false (default: false)
	98	[-v false/orchidee2.0/orchidee1.9/true] : (Earth) version of the vegetation model to include (default: false)
[1019]	99	false : no vegetation model
	100	orchidee2.0 : compile using ORCHIDEE 2.0 (or more recent version)
	101	orchidee1.9 : compile using ORCHIDEE up to the version including OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6
	102	true : (obsolete; for backward compatibility) use ORCHIDEE tag 1.9-1.9.6
[957]	103	[-chimie INCA/false] : (Earth) with INCA chemistry model or without (default: false)
	104	[-cosp cosp/false] : (Earth) add the cosp model (default: false)
[1403]	105	[-sisvat true/false] : (Earth) compile with/without sisvat package (default: false)
	106	[-rrtm true/false] : (Earth) compile with/without rrtm package (default: false)
[1650]	107	[-dust true/false] : (Earth) compile with/without the dust package by Boucher and co (default: false)
	108	[-strataer true/false] : (Earth) compile with/without the strat aer package by Boucher and co (default: false)
[957]	109	[-parallel none/mpi/omp/mpi_omp] : parallelism (default: none) : mpi, openmp or mixted mpi_openmp
	110	[-g GRI] : grid configuration in dyn3d/GRI_xy.h (default: reg, inclues a zoom)
[1391]	111	[-io ioipsl/mix/xios] : Input/Output library (default: ioipsl)
[957]	112	[-include INCLUDES] : extra include path to add
	113	[-cpp CPP_KEY] : additional preprocessing definitions
	114	[-adjnt] : adjoint model, not operational ...
[979]	115	[-mem] : reduced memory dynamics (if in parallel mode)
[957]	116	[-filtre NOMFILTRE] : use filtre from libf/NOMFILTRE (default: filtrez)
	117	[-link LINKS] : additional links with other libraries
[1019]	118	[-j n] : active parallel compiling on ntask
[1107]	119	[-full] : full (re-)compilation (from scratch)
[957]	120	[-fcm_path path] : path to the fcm tool (default: tools/fcm/bin)
	121	[-ext_src path] : path to an additional set of routines to compile with the model
[1650]	122	[-arch_path path] : path to architecture files (default: $arch_default_path)
[957]	123	-arch arch : target architecture
	124	exec : executable to build
[1]	125	fin
	126	exit;;
	127
	128	"-d")
	129	dim=$2 ; shift ; shift ;;
	130
	131	"-p")
	132	physique="$2" ; shift ; shift ;;
	133
[957]	134	"-s")
	135	scatterers=$2 ; shift ; shift ;;
	136
	137	"-b")
	138	bands=$2 ; shift ; shift ;;
	139
[1]	140	"-g")
	141	grille="$2" ; shift ; shift ;;
	142
	143	"-c")
	144	couple="$2" ; shift ; shift ;;
	145
	146	"-prod")
	147	compil_mod="prod" ; shift ;;
	148
	149	"-dev")
	150	compil_mod="dev" ; shift ;;
	151
	152	"-debug")
	153	compil_mod="debug" ; shift ;;
	154
	155	"-io")
	156	io="$2" ; shift ; shift ;;
	157
	158	"-v")
	159	veget="$2" ; shift ; shift ;;
	160
[1300]	161	"-sisvat")
	162	sisvat="$2" ; shift ; shift ;;
	163
[1302]	164	"-rrtm")
	165	rrtm="$2" ; shift ; shift ;;
	166
[1650]	167	"-dust")
	168	dust="$2" ; shift ; shift ;;
	169
	170	"-strataer")
	171	strataer="$2" ; shift ; shift ;;
	172
[1]	173	"-chimie")
	174	chimie="$2" ; shift ; shift ;;
	175
	176	"-parallel")
	177	parallel="$2" ; shift ; shift ;;
	178
	179	"-include")
	180	INCLUDE="$INCLUDE -I$2" ; shift ; shift ;;
	181
	182	"-cpp")
	183	CPP_KEY="$CPP_KEY $2" ; shift ; shift ;;
	184
	185	"-adjnt")
[957]	186	echo "not operational ... work to be done here ";exit
[1]	187	opt_dep="$opt_dep adjnt" ; adjnt="-ladjnt -ldyn3d "
	188	optim="$optim -Dadj" ; shift ;;
	189
	190	"-cosp")
	191	cosp="$2" ; shift ; shift ;;
	192
[979]	193	"-mem")
	194	paramem="mem" ; shift ;;
[1]	195
	196	"-filtre")
	197	filtre=$2 ; shift ; shift ;;
	198
	199	"-link")
	200	LIB="$LIB $2" ; shift ; shift ;;
	201
	202	"-fcm_path")
	203	fcm_path=$2 ; shift ; shift ;;
	204
	205	"-ext_src")
	206	EXT_SRC=$2 ; shift ; shift ;;
	207
[1019]	208	"-j")
	209	job=$2 ; shift ; shift ;;
	210
	211	"-full")
	212	full="-full" ; shift ;;
	213
[1540]	214	"-libphy")
	215	libphy="true" ; shift ;;
	216
[1]	217	"-arch")
[1650]	218	arch=$2 ; arch_defined="TRUE" ; shift ; shift ;;
[1]	219
[1650]	220	"-arch_path")
	221	arch_path=$2 ; arch_path_defined="TRUE"; shift ; shift ;;
	222
[1]	223	*)
	224	code="$1" ; shift ;;
	225	esac
	226	done
	227
	228	###############################################################
[979]	229	# path to fcm
[1]	230	###############################################################
[979]	231	# handle case when provided path to fcm was given as a relative
	232	# path (from makelmdz_fcm script directory) and not an absolute path
	233	if [[ ${fcm_path:0:1} != "/" ]] ; then
	234	# prepend with makelmdz_fcm location
	235	fcm_path=$(cd $(dirname $0) ; pwd)"/"${fcm_path}
	236	fi
	237
	238	# add fcm_path to PATH
[847]	239	export PATH=${fcm_path}:${PATH}
[1]	240
[979]	241	echo "Path to fcm:"
	242	echo ${fcm_path}
[1]	243
	244	###############################################################
	245	# lecture des chemins propres à l'architecture de la machine #
	246	###############################################################
	247	rm -f .void_file
	248	echo > .void_file
	249	rm -rf .void_dir
	250	mkdir .void_dir
	251
[1650]	252	if [[ "$arch_defined" == "TRUE" ]]
	253	then
	254	rm -f arch.path
	255	rm -f arch.fcm
	256	rm -f arch.env
	257
	258	if test -f $arch_path/arch-${arch}.path
	259	then
	260	ln -s $arch_path/arch-${arch}.path arch.path
	261	elif test -f $arch_default_path/arch-${arch}.path
	262	then
	263	ln -s $arch_default_path/arch-${arch}.path arch.path
	264	fi
	265
	266	if test -f $arch_path/arch-${arch}.fcm
	267	then
	268	ln -s $arch_path/arch-${arch}.fcm arch.fcm
	269	elif test -f $arch_default_path/arch-${arch}.fcm
	270	then
	271	ln -s $arch_default_path/arch-${arch}.fcm arch.fcm
	272	fi
	273
	274	if test -f $arch_path/arch-${arch}.env
	275	then
	276	ln -s $arch_path/arch-${arch}.env arch.env
	277	elif test -f $arch_default_path/arch-${arch}.env
	278	then
	279	ln -s $arch_default_path/arch-${arch}.env arch.env
	280	else
	281	ln -s .void_file arch.env
	282	fi
	283	# source architecture PATH and ENV files
	284	source arch.env
	285	source arch.path
	286	else
	287	echo "You must define a target architecture"
	288	exit 1
	289	fi
	290
[1]	291	########################################################################
	292	# Definition des clefs CPP, des chemins des includes et modules
	293	# et des libraries
	294	########################################################################
	295
	296	if [[ "$compil_mod" == "prod" ]]
	297	then
	298	COMPIL_FFLAGS="%PROD_FFLAGS"
	299	elif [[ "$compil_mod" == "dev" ]]
	300	then
	301	COMPIL_FFLAGS="%DEV_FFLAGS"
	302	elif [[ "$compil_mod" == "debug" ]]
	303	then
	304	COMPIL_FFLAGS="%DEBUG_FFLAGS"
	305	fi
	306
[1403]	307	phys_root=$physique
	308	if [[ "${physique:0:3}" == "lmd" ]] ; then phys_root=lmd ; fi
	309	if [[ "${physique:0:3}" == "mar" ]] ; then phys_root=mar ; fi
	310	if [[ "${physique:0:4}" == "mars" ]] ; then phys_root=mars ; fi
	311	if [[ "${physique:0:3}" == "std" ]] ; then phys_root=std ; fi
	312	if [[ "${physique:0:5}" == "venus" ]] ; then phys_root=venus ; fi
	313	if [[ "${physique:0:5}" == "titan" ]] ; then phys_root=titan ; fi
	314	if [[ "${physique:0:3}" == "dev" ]] ; then phys_root=dev ; fi
	315
[1]	316	if [[ "$physique" != "nophys" ]]
	317	then
[847]	318	#We'll use some physics
[37]	319	CPP_KEY="$CPP_KEY CPP_PHYS"
[1403]	320	if [[ "${phys_root}" == "lmd" ]]
[847]	321	then
	322	#For lmd physics, default planet type is Earth
[1]	323	CPP_KEY="$CPP_KEY CPP_EARTH"
[847]	324	fi
[1521]	325	# set physics common utilities path
	326	PHY_COMMON_PATH="${LIBFGCM}/phy_common"
[1403]	327	# set the dyn/phys interface path
[1540]	328	DYN_PHYS_PATH="${LIBFGCM}/dynphy_lonlat"
	329	DYN_PHYS_SUB_PATH="${LIBFGCM}/dynphy_lonlat/phy${phys_root}"
[1]	330	fi
	331
[1403]	332	if [[ "$filtre" == "filtrez" ]]
	333	then
	334	FILTRE_PATH=${LIBFGCM}/$filtre
	335	fi
	336
[1]	337	if [[ "$chimie" == "INCA" ]]
	338	then
	339	CPP_KEY="$CPP_KEY INCA"
	340	INCLUDE="$INCLUDE -I${INCA_INCDIR}"
[1695]	341	LIB="$LIB -L${INCA_LIBDIR} ${INCA_LIB}"
[1]	342	fi
	343
	344	if [[ "$couple" != "false" ]]
	345	then
[1302]	346	if [[ "$couple" == "MPI1" ]]
	347	then
	348	CPP_KEY="$CPP_KEY CPP_COUPLE"
	349	export OASIS_INCDIR=$LMDGCM/../../prism/X64/build/lib/psmile.MPI1
	350	export OASIS_LIBDIR=$LMDGCM/../../prism/X64/lib
	351	INCLUDE="$INCLUDE -I${OASIS_INCDIR}"
[1695]	352	LIB="$LIB -L${OASIS_LIBDIR} ${OASIS_LIB}"
[1302]	353	else
	354	CPP_KEY="$CPP_KEY CPP_COUPLE CPP_OMCT"
	355	INCLUDE="$INCLUDE -I${OASIS_INCDIR}"
[1695]	356	LIB="$LIB -L${OASIS_LIBDIR} ${OASIS_LIB}"
[1302]	357	fi
[1]	358	fi
	359
[1530]	360	if [[ "$parallel" != "none" && \
	361	( "$code" == "newstart" \|\| "$code" == "start2archive" ) ]]
	362	then
	363	echo "newstart or start2archive utilities should be run in serial!"
	364	echo " Compile without -parallel [mpi\|omp\|mpi_omp] option!"
	365	exit
	366	fi
	367
[1]	368	if [[ "$parallel" == "mpi" ]]
	369	then
	370	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI"
	371	PARA_FFLAGS="%MPI_FFLAGS"
	372	PARA_LD="%MPI_LD"
	373	elif [[ "$parallel" == "omp" ]]
	374	then
	375	CPP_KEY="$CPP_KEY CPP_PARA CPP_OMP"
	376	PARA_FFLAGS="%OMP_FFLAGS"
	377	PARA_LD="%OMP_LD"
	378	elif [[ "$parallel" == "mpi_omp" ]]
	379	then
	380	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI CPP_OMP"
	381	PARA_FFLAGS="%MPI_FFLAGS %OMP_FFLAGS"
	382	PARA_LD="%MPI_LD %OMP_LD"
	383	fi
	384
	385	if [[ ( "$parallel" == "omp" \|\| "$parallel" == "mpi_omp" ) \
	386	&& "$compil_mod" == "debug" ]]
	387	then
	388	echo "Usually, parallelization with OpenMP requires some optimization."
	389	echo "We suggest switching to \"-dev\"."
	390	fi
	391
[1019]	392	if [ "$veget" = "true" -o "$veget" = "orchidee1.9" -o "$veget" = "orchidee2.0" ]
[1]	393	then
[1019]	394	#NB: option 'true': for backward compatibility. To be used with ORCHIDEE tag 1.9-1.9.6
	395	# For this case, cpp flag ORCHIDEE_NOOPENMP must be added to the makelmdz_fcm arguments
	396	# option orchidee1.9 : Compile with ORCHIDEE version up to the inclusion of OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6
[1695]	397	INCLUDE="${INCLUDE} ${ORCHIDEE_INCDIR}"
[1]	398	CPP_KEY="$CPP_KEY CPP_VEGET"
[1019]	399	# temporary, for Orchidee versions 1.9.* (before openmp activation)
	400	if [[ "$veget" == "orchidee1.9" ]] ; then
	401	CPP_KEY="$CPP_KEY ORCHIDEE_NOOPENMP"
	402	fi
	403	if [[ "$veget" == "orchidee2.0" ]] ; then
[1300]	404	orch_libs="sechiba parameters stomate parallel orglob orchidee"
[1019]	405	else
	406	orch_libs="sechiba parameters stomate parallel orglob"
	407	fi
[1695]	408	LIB="${LIB} -L${ORCHIDEE_LIBDIR} ${ORCHIDEE_LIB}"
[1019]	409	elif [[ "$veget" != "false" ]] ; then
	410	echo "Option -v $veget does not exist"
	411	echo "Use ./makelmdz_fcm -h for more information"
	412	exit
[1]	413	fi
	414
[1300]	415	if [[ "$sisvat" == "true" ]]
	416	then
	417	CPP_KEY="$CPP_KEY CPP_SISVAT"
[1302]	418	SISVAT_PATH="$LIBFGCM/%PHYS/sisvat"
[1300]	419	fi
	420
[1302]	421	if [[ "$rrtm" == "true" ]]
	422	then
	423	CPP_KEY="$CPP_KEY CPP_RRTM"
	424	RRTM_PATH="$LIBFGCM/%PHYS/rrtm"
	425	fi
	426
[1650]	427	if [[ "$dust" == "true" ]]
	428	then
	429	CPP_KEY="$CPP_KEY CPP_Dust"
	430	DUST_PATH="$LIBFGCM/%PHYS/Dust"
	431	fi
	432
	433	if [[ "$strataer" == "true" ]]
	434	then
	435	CPP_KEY="$CPP_KEY CPP_StratAer"
	436	STRATAER_PATH="$LIBFGCM/%PHYS/StratAer"
	437	fi
	438
[1]	439	if [[ $io == ioipsl ]]
	440	then
	441	CPP_KEY="$CPP_KEY CPP_IOIPSL"
[1695]	442	INCLUDE="$INCLUDE ${IOIPSL_INCDIR}"
	443	LIB="$LIB ${IOIPSL_LIBDIR} ${IOIPSL_LIB}"
[1391]	444	elif [[ $io == mix ]]
[1300]	445	then
	446	# For now, xios implies also using ioipsl
	447	CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS"
[1695]	448	INCLUDE="$INCLUDE ${IOIPSL_INCDIR} ${XIOS_INCDIR}"
	449	LIB="$LIB ${IOIPSL_LIBDIR} ${IOIPSL_LIB} ${XIOS_LIBDIR} ${XIOS_LIB}"
[1391]	450	elif [[ $io == xios ]]
	451	then
	452	# For now, xios implies also using ioipsl
	453	CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS CPP_IOIPSL_NO_OUTPUT"
[1695]	454	INCLUDE="$INCLUDE ${IOIPSL_INCDIR} ${XIOS_INCDIR}"
	455	LIB="$LIB ${IOIPSL_LIBDIR} ${IOIPSL_LIB} ${XIOS_LIBDIR} ${XIOS_LIB}"
[1]	456	fi
[895]	457
[1]	458	if [[ "$cosp" == "true" ]]
	459	then
	460	CPP_KEY="$CPP_KEY CPP_COSP"
	461	COSP_PATH="$LIBFGCM/cosp"
	462	# LIB="${LIB} -l${LIBPREFIX}cosp"
	463	fi
	464
[1403]	465	# for Titan (but could be used by others as well), there is also "chimtitan"
	466	if [[ -d ${LIBFGCM}/chim${physique} ]]
[895]	467	then
	468	CHEM_PATH="${LIBFGCM}/chim${physique}"
	469	INCLUDE="$INCLUDE -I${LIBFGCM}/chim${physique}"
	470	fi
	471
[1793]	472	# for Titan add microphysics dependencies
	473	if [[ -d ${LIBFGCM}/muphy${physique} ]] ; then
	474
	475	# add muphy{physique} to the list of files to compile.
	476	MUPHY_PATH="${LIBFGCM}/muphy${physique}"
	477	# For Titan as we embbed some libraries with CPP keys, we define them:
	478	# -DPREC={32\|64\|80} real kind precision (32: simple, 64: double, 80: extended double)
	479	# -DHAVE_NC_FTN=1 (mandatory: for support of NetCDF in lintnd).
	480	CPP_KEY="$CPP_KEY PREC=64 HAVE_NC_FTN=1"
	481	if [[ "${physique}" == "titan" ]] ; then
	482	echo "Yaahh you're about to use YAMMS in a GCM..."
	483	fi
	484	fi
	485
[1661]	486	# for Venus (but could be used by others as well), there is also "phyvenus/cloudvenus"
	487	if [[ -d ${LIBFGCM}/phy${physique}/cloud${physique} ]]
	488	then
	489	CLOUD_PATH="${LIBFGCM}/phy${physique}/cloud${physique}"
	490	INCLUDE="$INCLUDE -I${LIBFGCM}/phy${physique}/cloud${physique}"
	491	fi
	492
[1107]	493	# for Mars (but could be used by others as well), there is also "aeronomars"
	494	if [[ -d ${LIBFGCM}/aerono${physique} ]]
	495	then
	496	AERONO_PATH="${LIBFGCM}/aerono${physique}"
	497	INCLUDE="$INCLUDE -I${LIBFGCM}/aerono${physique}"
	498	fi
	499
[1695]	500	# NETCDF library include/library paths
[270]	501	INCLUDE="$INCLUDE ${NETCDF_INCDIR}"
[1695]	502	LIB="$LIB ${NETCDF_LIBDIR} ${NETCDF_LIB}"
[270]	503
[1]	504	########################################################################
	505	# calcul du nombre de dimensions
	506	########################################################################
	507
	508
	509	dim_full=$dim
	510	dim=`echo $dim \| sed -e 's/[^0-9]/ /g'`
	511	set $dim
	512	dimc=$#
	513	echo calcul de la dimension
	514	echo dim $dim
	515	echo dimc $dimc
	516
	517
	518	########################################################################
	519	# Gestion des dimensions du modele.
	520	# on cree ou remplace le fichier des dimensions
	521	########################################################################
	522
[979]	523	cd $LIBFGCM/grid
	524	if [[ -f dimensions.h ]]
	525	then
	526	echo 'ATTENTION: vous etes sans doute en train de compiler le modele par ailleurs'
	527	echo "Attendez que la premiere compilation soit terminee pour relancer la suivante."
	528	echo "Si vous etes sur que vous ne compilez pas le modele par ailleurs,"
	529	echo vous pouvez continuer en repondant oui.
	530	echo "Voulez-vous vraiment continuer?"
	531	echo ""
	532	echo "WARNING: you are probably already compiling the model somewhere else."
	533	echo "Wait until the first compilation is finished before launching this one."
	534	echo "If you are sure that you are not compiling elsewhere, just answer "
	535	echo "yes (or 'oui') to the question below to proceed."
	536	echo "Do you wish to continue?"
	537	read reponse
	538	if [[ $reponse == "oui" \|\| $reponse == "yes" ]]
	539	then
	540	\rm -f $LIBFGCM/grid/dimensions.h
	541	else
	542	exit
	543	fi
	544	fi
	545
	546
[1]	547	cd $LIBFGCM/grid/dimension
	548	./makdim $dim
[1441]	549	if (($? != 0))
	550	then
	551	exit 1
	552	fi
	553
[1]	554	cat $LIBFGCM/grid/dimensions.h
	555	cd $LMDGCM
	556
[957]	557	if [[ "$bands" != "" ]]
[847]	558	then
[957]	559	# Generic model, recreate bands.h (IR & VIS bands for radiative transfer)
	560	bands=$(echo $bands \| sed -e 's/[^0-9]/ /g')
	561	cd $LIBFGCM/phy$physique/bands
	562	./makbands $bands
	563	cat $LIBFGCM/phy$physique/bands.h
	564	cd $LMDGCM
[847]	565	fi
[1]	566
[957]	567	if [[ "$scatterers" != "" ]]
	568	then
	569	# Generic model, recreate scatterers.h
	570	cd $LIBFGCM/phy$physique/scatterers
	571	./make_scatterers $scatterers
	572	cat $LIBFGCM/phy$physique/scatterers.h
	573	cd $LMDGCM
	574	fi
	575
	576
[1]	577	########################################################################
	578	# Differentes dynamiques (3d, 2d, 1d)
	579	########################################################################
	580
	581	dimension=`echo $dim \| wc -w`
	582	echo dimension $dimension
	583
	584	if (( $dimension == 3 ))
	585	then
	586	cd $LIBFGCM/grid
	587	\rm fxyprim.h
	588	cp -p fxy_${grille}.h fxyprim.h
[895]	589	#else
	590	# echo "Probleme dans les dimensions de la dynamique !!"
	591	# echo "Non reactive pour l'instant !!!"
[1]	592	fi
	593
[895]	594	if (( $dimension == 1 ))
	595	then
[1530]	596	## Sanity check: 1D models should be used in serial
	597	if [[ $parallel != "none" ]]
	598	then
	599	echo "Error: a 1D model should not be compiled with "
	600	echo " -parallel [mpi\|omp\|mpi_omp] option!"
	601	exit
	602	fi
[1403]	603	CPP_KEY="$CPP_KEY CPP_1D"
[895]	604	##in 1D, add dyn3d to include path (because main prog is in physics)
[1403]	605	INCLUDE="$INCLUDE -Ilibf/dyn3d -Ilibf/dyn3d_common"
	606	## no filtre in 1d:
	607	FILTRE_PATH=$LMDGCM/.void_dir
	608	## no need to compile all routines in dyn3d_common either:
	609	DYN_COMMON_PATH=$LMDGCM/.void_dir
	610	## no need to compile all routines in dynlmdz_phy... ;
	611	## (because key ones are included in 1D main program)
	612	DYN_PHYS_PATH=$LMDGCM/.void_dir
	613	DYN_PHYS_SUB_PATH=$LMDGCM/.void_dir
[895]	614	fi
	615
[1]	616	######################################################################
	617	# Traitement special pour le nouveau rayonnement de Laurent Li.
	618	# ---> YM desactive pour le traitemement en parallele
	619	######################################################################
	620
	621	#if [[ -f $libf/phy$physique/raddim.h ]]
	622	#then
	623	# if [[ -f $libf/phy$physique/raddim.$dimh.h ]]
	624	#then
	625	# \rm -f $libf/phy$physique/raddim.h
	626	# cp -p $libf/phy$physique/raddim.$dimh.h $libf/phy$physique/raddim.h
	627	# echo $libf/phy$physique/raddim.$dimh.h
	628	# cat $libf/phy$physique/raddim.h
	629	# else
	630	# echo On peut diminuer la taille de l executable en creant
	631	# echo le fichier $libf/phy$physique/raddim.$dimh.h
	632	# \cp -p $libf/phy$physique/raddim.defaut.h $libf/phy$physique/raddim.h
	633	# fi
	634	#fi
	635
	636	######################################################################
	637	# Gestion du filtre qui n'existe qu'en 3d.
	638	######################################################################
	639
	640	if (( `expr $dimc \> 2` == 1 ))
	641	then
	642	filtre="FILTRE=$filtre"
	643	else
	644	filtre="FILTRE= L_FILTRE= "
	645	fi
	646	echo MACRO FILTRE $filtre
	647
	648	echo $dimc
	649
	650
	651
	652	######################################################################
	653	# Creation du suffixe de la configuration
	654	######################################################################
	655
	656
	657	SUFF_NAME=_${dim_full}
	658	SUFF_NAME=${SUFF_NAME}_phy${physique}
	659
	660	if [[ "$parallel" != "none" ]]
	661	then
	662	SUFF_NAME=${SUFF_NAME}_para
[979]	663	DYN=dyn${dimc}d${paramem}
	664	if [[ "$paramem" == "mem" ]]
	665	then
	666	SUFF_NAME=${SUFF_NAME}_${paramem}
	667	fi
[1]	668	else
	669	SUFF_NAME=${SUFF_NAME}_seq
[1403]	670	if (( $dimension == 1 ))
	671	then
	672	# dynamics-related routines in"dyn1d" subdirectory of phy${physique}
	673	DYN=phy${physique}/dyn1d
	674	else
	675	DYN=dyn${dimc}d
[895]	676	fi
[1]	677	fi
	678
[1019]	679	if [[ $veget != "false" ]]
[1]	680	then
	681	SUFF_NAME=${SUFF_NAME}_orch
	682	fi
	683
	684	if [[ $couple != "false" ]]
	685	then
	686	SUFF_NAME=${SUFF_NAME}_couple
	687	fi
	688
	689	if [[ $chimie == "INCA" ]]
	690	then
	691	SUFF_NAME=${SUFF_NAME}_inca
	692	fi
	693
[1540]	694	if [[ $libphy == "true" ]]
	695	then
	696	# special case where we compile only the physics
	697	DYN=$LMDGCM/.void_dir
	698	DYN_COMMON_PATH=$LMDGCM/.void_dir
	699	FILTRE_PATH=$LMDGCM/.void_dir
	700	DYN_PHYS_PATH=$LMDGCM/.void_dir
	701	DYN_PHYS_SUB_PATH=$LMDGCM/.void_dir
	702	#and there is no main program to generate
	703	code=""
	704	SUFF_NAME=""
	705	else
	706	SUFF_NAME=${SUFF_NAME}.e
	707	fi
	708
[1]	709	cd $LMDGCM
	710	config_fcm="config.fcm"
	711	rm -f $config_fcm
	712	touch $config_fcm
	713	rm -f bin/${code}${SUFF_NAME}.e
	714	rm -f arch.fcm
	715	rm -f arch.opt
	716
	717	echo "%ARCH $arch" >> $config_fcm
	718	echo "%INCDIR $INCLUDE" >> $config_fcm
	719	echo "%LIB $LIB" >> $config_fcm
	720	echo "%ROOT_PATH $PWD" >> $config_fcm
	721	echo "%LIBF $LIBFGCM" >> $config_fcm
	722	echo "%LIBO $LIBOGCM" >> $config_fcm
	723	echo "%DYN $DYN" >> $config_fcm
[1403]	724	echo "%DYN_COMMON $DYN_COMMON_PATH" >> $config_fcm
[1521]	725	echo "%PHY_COMMON $PHY_COMMON_PATH" >> $config_fcm
[1403]	726	echo "%FILTRE $FILTRE_PATH" >> $config_fcm
[1]	727	echo "%PHYS phy${physique}" >> $config_fcm
[1403]	728	echo "%DYN_PHYS $DYN_PHYS_PATH" >> $config_fcm
	729	echo "%DYN_PHYS_SUB $DYN_PHYS_SUB_PATH" >> $config_fcm
[1302]	730	echo "%RRTM $RRTM_PATH" >> $config_fcm
[1650]	731	echo "%DUST $DUST_PATH" >> $config_fcm
	732	echo "%STRATAER $STRATAER_PATH" >> $config_fcm
[1302]	733	echo "%SISVAT $SISVAT_PATH" >> $config_fcm
[1]	734	echo "%COSP $COSP_PATH" >> $config_fcm
[895]	735	echo "%CHEM $CHEM_PATH" >> $config_fcm
[1661]	736	echo "%CLOUD $CLOUD_PATH" >> $config_fcm
[1793]	737	echo "%MUPHY $MUPHY_PATH" >> $config_fcm
[1107]	738	echo "%AERONO $AERONO_PATH" >> $config_fcm
[1]	739	echo "%CPP_KEY $CPP_KEY" >> $config_fcm
	740	echo "%EXEC $code" >> $config_fcm
	741	echo "%SUFF_NAME $SUFF_NAME" >> $config_fcm
	742	echo "%COMPIL_FFLAGS $COMPIL_FFLAGS" >> $config_fcm
	743	echo "%PARA_FFLAGS $PARA_FFLAGS" >> $config_fcm
	744	echo "%PARA_LD $PARA_LD" >> $config_fcm
	745	echo "%EXT_SRC $EXT_SRC" >> $config_fcm
	746
	747
	748
	749	ln -s arch/arch-${arch}.fcm arch.fcm
	750	if test -f arch/arch-${arch}.opt && [ $compil_mod = "prod" ]
	751	then
	752	ln -s arch/arch-${arch}.opt arch.opt
	753	else
	754	ln -s .void_file arch.opt
	755	fi
	756
	757
	758	rm -f $LIBOGCM/${arch}${SUFF_NAME}/.config/fcm.bld.lock
[1019]	759	./build_gcm ${fcm_path} -j $job $full
[1]	760
	761	rm -rf tmp_src
	762	rm -rf config
	763	ln -s $LIBOGCM/${arch}${SUFF_NAME}/.config config
[1540]	764	ln -s $LIBOGCM/${arch}${SUFF_NAME}/.config/ppsrc tmp_src
[979]	765
[1300]	766
[979]	767	if [[ -r $LIBFGCM/grid/dimensions.h ]]
	768	then
	769	# Cleanup: remove dimension.h file
	770	\rm -f $LIBFGCM/grid/dimensions.h
	771	fi

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