Changeset 4871 for BOL/script_install_amaury/install_xios.bash
- Timestamp:
- Mar 25, 2024, 10:27:44 AM (8 weeks ago)
- File:
-
- 1 edited
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BOL/script_install_amaury/install_xios.bash (modified) (1 diff)
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BOL/script_install_amaury/install_xios.bash
r4782 r4871 1 #!/bin/bash 2 ######################################################################### 3 # Defaults 4 ######################################################################### 5 hostname=`hostname` 6 install_dir=$(pwd) 7 netcdf_home="/usr/local/netcdf" 8 hdf5_home="/usr/local/hdf5" 9 if [ -d /usr/lib64/openmpi ] ; then 10 mpi_home="/usr/lib64/openmpi" 11 else 12 mpi_home="/usr" 13 fi 14 arch="local" 15 #xios_branch="trunk" 16 xios_branch="2.6" 17 #xios_rev="HEAD" 18 xios_rev="2568" 1 #!/bin/bash 2 set -e -u # exit on most (not all!) error codes, and error on unset variables 19 3 20 ######################################################################### 21 # Options 22 ######################################################################### 23 while (($# > 0)) 24 do 25 case $1 in 26 "-h") cat <<........fin 27 $0 [ -prefix path ] where (path) to install 28 (default: $install_dir) 29 [ -netcdf path ] top directory of the netcdf library 30 (default: $netcdf_home) 31 [ -hdf5 path ] top directory of the hdf5 library 32 (default: $hdf5_home) 33 [ -MPI path ] top directory of the MPI library 34 (default: $mpi_home) 35 [ -branch branch] XIOS branch trunk|2.5|2.6 36 (default: $xios_branch) 37 [ -rev number ] XIOS revision 38 (default: $xios_rev) 39 [ -arch ARCH ] Use ARCH file (provided by XIOS) 40 (default: make/use a local arch file) 41 ........fin 42 exit ;; 43 "-prefix") install_dir=$2 ; shift ; shift ;; 44 "-netcdf") netcdf_home=$2 ; shift ; shift ;; 45 "-hdf5" ) hdf5_home=$2 ; shift ; shift ;; 46 "-MPI") mpi_home=$2 ; shift ; shift ;; 47 "-branch") xios_branch=$2 ; shift ; shift ;; 48 "-rev") xios_rev=$2 ; shift ; shift ;; 49 "-arch") arch=$2 ; shift ; shift ;; 50 *) echo "Error, bad argument $1" ; $0 -h ; exit 51 esac 52 done 4 # Installs xios 5 # Rewritten 02/2024 A. Barral 53 6 54 # Install directory (get full path) 55 mkdir -p $install_dir 56 install_dir=$(cd $install_dir ; pwd -P)7 function read_args { 8 ## Defaults 9 install_dir=$(pwd) 57 10 58 # Download XIOS 59 case $xios_branch in 60 "trunk") 61 xios_http="http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/trunk" ;; 62 "2.5") 63 xios_http="http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-2.5" ;; 64 "2.6") 65 xios_http="http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS2/branches/xios-2.6" ;; 66 *) 67 echo "Error, bad argument for -branch ! Did not expect $xios_branch" ; exit ;; 68 esac 11 xios_branch="2.6" 12 xios_rev="2568" 13 arch="local" 14 make_j="8" 15 # Not inputs 16 hdf5_home=$(dirname "$(dirname "$(readlink -f "$(which h5pcc)")")") 17 mpi_home=$(dirname "$(dirname "$(readlink -f "$(which mpif90)")")") 69 18 70 cd $install_dir 71 svn co --revision $xios_rev $xios_http XIOS 19 while (($# > 0)); do 20 case $1 in 21 "-h") cat <<eof 22 $0 [ -prefix path ] where (path) to install (default: $install_dir) 23 [ -branch branch] XIOS branch trunk|2.5|2.6 (default: $xios_branch) 24 [ -rev number ] XIOS revision (default: $xios_rev) 25 [ -arch ARCH ] Use ARCH file (provided by XIOS) (default: make/use a local arch file) 26 [ -make_j N ] Number of procs for compilation 27 eof 28 exit;; 29 "-prefix") install_dir=$2; shift; shift;; 30 "-branch") xios_branch=$2; shift; shift;; 31 "-rev") xios_rev=$2; shift; shift;; 32 "-arch") arch=$2; shift; shift;; 33 "-make_j") make_j=$2; shift; shift;; 34 *) echo "Error, bad argument $1"; $0 -h; exit 35 esac 36 done 37 } 72 38 73 # Make arch files, if necesary: 74 if [ "$arch" = "local" ] ; then 75 cd $install_dir/XIOS/arch 76 # arch-local.env 77 echo 'export MPI_LIB="-L'${mpi_home}'/lib -lmpi"' > arch-local.env 78 echo '' >> arch-local.env 79 echo 'export NETCDFC='${netcdf_home} >> arch-local.env 80 echo 'export NETCDFC_LIB=$NETCDFC/lib' >> arch-local.env 81 echo 'export NETCDFC_INC=$NETCDFC/include' >> arch-local.env 82 echo '' >> arch-local.env 83 echo 'export NETCDFF='${netcdf_home} >> arch-local.env 84 echo 'export NETCDFF_LIB=$NETCDFF/lib' >> arch-local.env 85 echo 'export NETCDFF_INC=$NETCDFF/include' >> arch-local.env 86 echo '' >> arch-local.env 87 echo 'export NETCDFCXX='${netcdf_home} >> arch-local.env 88 echo 'export NETCDFCXX_LIB=$NETCDFCXX/lib' >> arch-local.env 89 echo 'export NETCDFCXX_INC=$NETCDFCXX/include' >> arch-local.env 39 function download_xios { 40 # Install directory (get full path) 41 mkdir -p "$install_dir" 42 install_dir=$(cd "$install_dir" || exit 1; pwd -P) 90 43 91 # arch-local.fcm 92 echo '%CCOMPILER '${mpi_home}'/bin/mpicc' > arch-local.fcm 93 echo '%FCOMPILER '${mpi_home}'/bin/mpif90' >> arch-local.fcm 94 echo '%LINKER '${mpi_home}'/bin/mpif90' >> arch-local.fcm 95 echo '' >> arch-local.fcm 96 if [ ${hostname:0:5} = cicla ] ; then 97 echo '%BASE_CFLAGS -w -ansi' >> arch-local.fcm 98 else 99 echo '%BASE_CFLAGS -w -std=c++11 -D__XIOS_EXCEPTION' >> arch-local.fcm 100 fi 101 echo '%PROD_CFLAGS -O3 -D BOOST_DISABLE_ASSERTS' >> arch-local.fcm 102 echo '%DEV_CFLAGS -g -O2' >> arch-local.fcm 103 echo '%DEBUG_CFLAGS -g -DBZ_DEBUG' >> arch-local.fcm 104 echo '' >> arch-local.fcm 105 echo '%BASE_FFLAGS -D__NONE__ -ffree-line-length-none' >> arch-local.fcm 106 echo '%PROD_FFLAGS -O3' >> arch-local.fcm 107 echo '%DEV_FFLAGS -g -O2' >> arch-local.fcm 108 echo '%DEBUG_FFLAGS -g' >> arch-local.fcm 109 echo '' >> arch-local.fcm 110 echo '%BASE_INC -D__NONE__' >> arch-local.fcm 111 echo '%BASE_LD -lstdc++ -Wl,-rpath='${mpi_home}'/lib' >> arch-local.fcm 112 echo '' >> arch-local.fcm 113 echo '%CPP '${mpi_home}'/bin/mpicc -EP' >> arch-local.fcm 114 echo '%FPP cpp -P' >> arch-local.fcm 115 echo '%MAKE make' >> arch-local.fcm 44 local xios_http 45 case $xios_branch in 46 "trunk") xios_http="http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/trunk";; 47 "2.5") xios_http="http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-2.5";; 48 "2.6") xios_http="http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS2/branches/xios-2.6";; 49 *) echo "Error, bad argument for -branch ! Did not expect $xios_branch"; exit 1;; 50 esac 116 51 117 # arch-local.path 118 echo 'NETCDF_INCDIR="-I${NETCDFC_INC} -I${NETCDFF_INC} -I${NETCDFCXX_INC} "' > arch-local.path 119 echo 'NETCDF_LIBDIR="-L${NETCDFC_LIB} -L${NETCDFF_LIB} -L${NETCDFCXX_LIB} "' >> arch-local.path 120 echo 'NETCDF_LIB="-lnetcdf -lnetcdff -lnetcdf_c++4"' >> arch-local.path 121 echo 'HDF5_INCDIR="-I'${hdf5_home}'/include"' >> arch-local.path 122 echo 'HDF5_LIBDIR="-L'${hdf5_home}'/lib"' >> arch-local.path 123 echo 'HDF5_LIB="-lhdf5_hl -lhdf5 -lhdf5 -lz -lcurl"' >> arch-local.path 124 fi 52 cd "$install_dir" || exit 1 53 svn co --revision "$xios_rev" "$xios_http" XIOS 54 } 125 55 126 # make XIOS 127 cd $install_dir/XIOS 128 ./make_xios --arch $arch --job 8 2>&1 | tee make_xios.out 56 function create_local_arch { 57 cd "$install_dir/XIOS/arch" || exit 1 129 58 59 cat <<eof > arch-local.env 60 export MPI_LIB="-L${mpi_home}/lib -lmpi" 61 62 export NETCDFC_INC="\$(nc-config --includedir)" 63 export NETCDFC_LIB="\$(nc-config --libdir)" 64 65 export NETCDFF_INC="\$(nf-config --includedir)" 66 export NETCDFF_LIB="\$(nf-config --prefix)/lib" 67 68 export NETCDFCXX_INC="\$(ncxx4-config --includedir)" 69 export NETCDFCXX_LIB="\$(ncxx4-config --libdir)" 70 eof 71 72 cat <<eof > arch-local.fcm 73 %CCOMPILER "$(which mpicc)" 74 %FCOMPILER "$(which mpif90)" 75 %LINKER "$(which mpif90)" 76 77 %BASE_CFLAGS -w -std=c++11 -D__XIOS_EXCEPTION 78 %PROD_CFLAGS -O3 -D BOOST_DISABLE_ASSERTS 79 %DEV_CFLAGS -g -O2 80 %DEBUG_CFLAGS -g -DBZ_DEBUG 81 82 %BASE_FFLAGS -D__NONE__ -ffree-line-length-none 83 %PROD_FFLAGS -O3 84 %DEV_FFLAGS -g -O2 85 %DEBUG_FFLAGS -g 86 87 %BASE_INC -D__NONE__ 88 %BASE_LD -lstdc++ -Wl,-rpath=${mpi_home}/lib 89 90 %CPP $(which mpicc) -EP 91 %FPP cpp -P 92 %MAKE make 93 eof 94 cat <<eof > arch-local.path 95 NETCDF_INCDIR="-I\${NETCDFC_INC} -I\${NETCDFF_INC} -I\${NETCDFCXX_INC}" 96 NETCDF_LIBDIR="-L\${NETCDFC_LIB} -L\${NETCDFF_LIB} -L\${NETCDFCXX_LIB}" 97 NETCDF_LIB="-lnetcdf -lnetcdff -lnetcdf_c++4" 98 99 HDF5_INCDIR="-I${hdf5_home}/include" 100 HDF5_LIBDIR="-L${hdf5_home}/lib" 101 HDF5_LIB="-lhdf5_hl -lhdf5 -lz -lcurl" 102 eof 103 } 104 105 function make_xios { 106 cd "$install_dir/XIOS" 107 echo "Compiling xios, see $(pwd)/make_xios.out" 108 ./make_xios --arch "$arch" --job "$make_j" >make_xios.out 2>&1 109 } 110 111 read_args "$@" 112 download_xios 113 if [[ $arch = "local" ]]; then create_local_arch; fi 114 make_xios 115
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