Changeset 4871 for BOL/script_install_amaury/install_lmdz.sh

Timestamp:

Mar 25, 2024, 10:27:44 AM (8 weeks ago)

Author:

abarral

Message:

(WIP)
fix IOIPSL fcm arch
refactor install_xios

File:

• BOL/script_install_amaury/install_lmdz.sh (modified) (7 diffs)

BOL/script_install_amaury/install_lmdz.sh

@@ -38 +38 @@
 ### Functions
 
-function myget {
-    # A function to fetch files either locally or on the internet
-
-    local file_name=$1
-    # Path on local computer where to look for the datafile
-    if [[ -f "/u/lmdz/WWW/LMDZ/pub/$file_name" ]]; then
-        \cp -f -p "/u/lmdz/WWW/LMDZ/pub/$file_name" .
-    elif [[ -f ~"/LMDZ/pub/$file_name" ]]; then
-        \cp -f -p ~"/LMDZ/pub/$file_name" .
-    else
-        wget --no-check-certificate -nv "http://lmdz.lmd.jussieu.fr/pub/$file_name"
-    fi
+function myget { # Get a file from LMDZ repository
+  local url=$1
+
+  local filename
+  filename=$(basename "$url")
+
+  wget --no-check-certificate -nv "http://lmdz.lmd.jussieu.fr/pub/$url"
+  if [[ $filename =~ .*\.(ba)?sh ]]; then chmod +x "$filename"; fi
 }
 
@@ -323 +319 @@
         \rm "modipsl.$version.tar"
     fi
+
+    if [[ $svn != "" ]]; then
+        mysvn=$svn
+    else
+        mysvn="$(grep 'Revision: [0-9]' "$MODEL"/Read*.md | awk ' { print $2 } ' 2>/dev/null)"
+    fi
+    echo "SVN revision used: $mysvn"
+}
+
+function setup_local_arch {
+    # Setup local arch, and correspondance between arch names accross different programs
+
+    case $arch in
+        local)
+            arch_ioipsl="gfortran"
+            arch_xios="local"
+
+            cat <<EOF >"$MODEL/modipsl/modeles/IOIPSL/arch/arch-${arch_ioipsl}.path"  # fix bad IOIPSL arch files...
+NETCDF_INCDIR="\$(nf-config --fflags)"
+NETCDF_LIBDIR="\$(nf-config --flibs)"
+EOF
+        ;;
+      *) arch_ioipsl=$arch
+         arch_xios=$arch
+  esac
 }
 
@@ -405 +426 @@
     echo "Compiling IOIPSL, the interface library with Netcdf $(date) (log: $ioipsllog)"
 
-    if ! ./makeioipsl_fcm -job 8 > "$ioipsllog" 2>&1; then
+    if ! ./makeioipsl_fcm -arch "$arch_ioipsl" -job 8 > "$ioipsllog" 2>&1; then
       echo "IOIPSL compile failed, exiting"; exit 1
     fi
@@ -413 +434 @@
 }
 
+function install_XIOS {
+    if [[ $with_xios = "y"  && ! -f "$MODEL/modipsl/modeles/XIOS/lib/libxios.a" ]]; then
+        cd "$MODEL/modipsl/modeles"
+        xioslog="$(pwd)/xios.log"
+        echo "##########################################################"
+        echo "Compiling XIOS (log $xioslog) $(date)"
+        echo "##########################################################"
+        myget script_install/install_xios.bash
+
+        if ! ./install_xios.bash -prefix "$MODEL/modipsl/modeles" -arch "$arch_xios" > "$xioslog" 2>&1; then
+            echo "XIOS compilation failed, exiting"; exit 1
+        fi
+
+        echo "Compiled XIOS $(date)"
+    fi
+}
+
 echo "install_lmdz.sh DEBUT $(date)"
 
@@ -419 +457 @@
 check_available_software
 download_model
+setup_local_arch
 install_netcdf
 install_IOIPSL
+install_XIOS
+
+exit 0
 
 
@@ -562 +604 @@
 
 
-if [[ "$with_xios" = "y" ]]; then
-    echo '##########################################################'
-    echo 'Compiling XIOS'
-    echo '##########################################################'
-    cd "$MODEL/modipsl/modeles"
-    xioslog="$(pwd)/xios.log"
-    #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/install_xios.bash
-    myget script_install/install_xios.bash
-    chmod u=rwx install_xios.bash
-# following will be recalculated later on once LMDZ is updated
-#    mysvn=`svnversion LMDZ | egrep || "[0-9]+" 2>/dev/null`
-    mysvn=$(grep 'Revision: [0-9]' "$MODEL"/Read*.md | awk ' { print $2 } ' 2>/dev/null)
-    if [[ $svn != "" ]]; then mysvn=$svn; fi
-    echo "mysvn $mysvn"
-
-    if [[ ${hostname:0:5} = jean- ]]; then
-        if [[ $mysvn -ge 4619 ]]; then
-            svn co http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS2/branches/xios-2.6 XIOS
-        else
-            svn co http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS2/branches/xios-2.5 XIOS
-        fi
-        cd XIOS/arch
-        svn update
-        cd ..
-        echo "Compiling XIOS, start $(date) (it takes about 20 min on Jean-Zay)"
-        echo "log file: $xioslog"
-        ./make_xios --prod --arch $arch --job 4 > xios.log 2>&1
-    else
-        ./install_xios.bash -prefix "$MODEL/modipsl/modeles" \
-                            -netcdf "$ncdfdir" -hdf5 "$ncdfdir" \
-                            -MPI "$root_mpi" -arch $arch > xios.log 2>&1
-    fi # of case Jean-Zay
-    if [[ -f XIOS/lib/libxios.a ]]; then
-        echo "XIOS library successfully generated"
-        echo install_lmdz.sh XIOS_OK "$(date)"
-    fi
-fi
-
 #============================================================================
 veget_version=false
-if [[ "$veget" != 'NONE' ]]; then
+if [[ $veget != 'NONE' ]]; then
     cd "$MODEL/modipsl/modeles/ORCHIDEE"
     set +e; svn upgrade; set -e
-    if [[ "$veget" = "CMIP6" ]]; then
+    if [[ $veget = "CMIP6" ]]; then
         veget_version=orchidee2.0
         orchidee_rev=6592
@@ -652 +656 @@
         # Pour les experts qui voudraient changer de version d'orchidee.
         # Attention : necessite d'avoir le password pour orchidee
-
-        # Correctif suite debug Jean-Zay
-        if [[ -f src_global/time.f90 ]]; then
-            sed -i -e 's/CALL tlen2itau/\!CALL tlen2itau/' src_global/time.f90
-        fi
         ###################################################################
         if [[ "$veget_version" == "false" ]]; then