| 1 | #!/bin/bash |
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| 2 | |
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| 3 | ########################################################################### |
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| 4 | # Author : Frédéric Hourdin/LMD/hourdin@lmd.jussieu.fr |
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| 5 | # Usage : install.sh |
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| 6 | # |
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| 7 | # bash installation script of the LMDZ model on a Linux PC. |
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| 8 | # the model is downloaded in the following direcory tree |
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| 9 | # $MODEL/modipsl/modeles/... |
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| 10 | # using the "modipsl" infrastructure created by the "IPSL" |
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| 11 | # for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling |
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| 12 | # activities. |
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| 13 | # Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE) |
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| 14 | # components. |
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| 15 | # |
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| 16 | # The sources of the models can be found in the "modeles" directory. |
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| 17 | # In the present case, LMDZ5, ORCHIDEE and IOIPSL (handling of input-outputs |
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| 18 | # using the NetCDF library. |
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| 19 | # |
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| 20 | # The script downloads various source files (including a version of NetCDF) |
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| 21 | # and utilities, compiles the model, and runs a test simulation in a |
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| 22 | # munimal configuration. |
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| 23 | # |
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| 24 | # Prerequisites : g95/pgf90/gfortran, ksh, wget , gunzip, tar, ... |
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| 25 | # |
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| 26 | # Modif 18/11/2011 |
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| 27 | # changes for option real 8. |
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| 28 | # We comopile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM |
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| 29 | # but with -r4 for netcdf. Variable real must be set to |
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| 30 | # r4 or r8 at the beginning of the script below. |
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| 31 | # |
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| 32 | ########################################################################### |
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| 33 | |
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| 34 | echo '################################################################' |
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| 35 | echo Choice of installation options |
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| 36 | echo '################################################################' |
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| 37 | |
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| 38 | |
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| 39 | #real=r4 |
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| 40 | real=r8 |
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| 41 | |
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| 42 | # WARNING !!!! For versions before october 2009, use |
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| 43 | # install.v2.sh instead of install.sh |
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| 44 | |
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| 45 | #version=20110921.trunk |
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| 46 | version=testing |
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| 47 | |
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| 48 | #Chemin pour placer le modele |
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| 49 | MODEL=./LMDZ$version |
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| 50 | |
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| 51 | getlmdzor=1 |
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| 52 | netcdf=1 # 1 for automatic installation |
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| 53 | # 0 for no installation |
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| 54 | # /.../../netcdf-4.0.1 if wanting to link with an already |
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| 55 | # compiled netcdf library (implies to check option compatibility) |
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| 56 | check_linux=1 |
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| 57 | ioipsl=1 |
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| 58 | veget=1 |
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| 59 | bench=1 |
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| 60 | pclinux=1 |
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| 61 | compilo=gfortran # compilo=pgf90 or g95 or gfortran or ifort sur PC linux |
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| 62 | |
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| 63 | |
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| 64 | ##################################################################### |
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| 65 | # Test for old gfortran compilers |
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| 66 | if [ $compilo = gfortran ] ; then |
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| 67 | gfortranv=`gfortran --version | \ |
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| 68 | head -1 | awk ' { print $NF } ' | awk -F. ' { print $1 * 10 + $2 } '` |
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| 69 | if [ $gfortranv -le 43 ] ; then |
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| 70 | echo ERROR : Your gfortran compiler is too old |
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| 71 | echo 'Please choose a new one (g95, ifort) and change the line' |
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| 72 | echo compilo=xxx |
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| 73 | echo in the install.sh script and rerun it |
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| 74 | exit |
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| 75 | fi |
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| 76 | fi |
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| 77 | ##################################################################### |
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| 78 | |
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| 79 | |
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| 80 | |
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| 81 | ## compile_with_fcm=1 : use makelmdz_fcm, possible a of version 20111103.trunk (LMDZ5/trunk rev 1578) |
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| 82 | ## compile_with_fcm=0 : use makegcm |
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| 83 | compile_with_fcm=1 |
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| 84 | |
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| 85 | OPTPREC="" |
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| 86 | echo '################################################################' |
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| 87 | echo Choix des options de compilation |
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| 88 | echo '################################################################' |
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| 89 | |
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| 90 | if [ $compilo = g95 ] ; then |
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| 91 | if [ $real = r8 ] ; then OPTPREC="-r8 -DNC_DOUBLE" ; fi |
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| 92 | OPTIM='-i4 -O3' |
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| 93 | elif [ $compilo = gfortran ] ; then |
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| 94 | if [ $real = r8 ] ; then OPTPREC="-fdefault-real-8 -DNC_DOUBLE" ; fi |
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| 95 | OPTIM='-O3' |
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| 96 | elif [ $compilo = pgf90 ] ; then |
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| 97 | if [ $real = r8 ] ; then OPTPREC="-r8 -DNC_DOUBLE" ; fi |
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| 98 | OPTIM='-O2 -Munroll -Mnoframe -Mautoinline -Mcache_align' |
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| 99 | # with pgf90, compile with fcm |
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| 100 | compile_with_fcm=1 |
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| 101 | else |
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| 102 | # ifort |
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| 103 | if [ $real = r8 ] ; then OPTPREC="-real-size 64 -DNC_DOUBLE" ; fi |
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| 104 | OPTIM="-O2 -fp-model strict -ip -align all " |
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| 105 | # with ifort, compile with fcm |
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| 106 | compile_with_fcm=1 |
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| 107 | fi |
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| 108 | OPTIMGCM="$OPTIM $OPTPREC" |
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| 109 | |
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| 110 | # choose the resolution for the bench runs |
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| 111 | # grid_resolution= 32x24x11 or 48x36x19 for tests (test without ORCHIDEE) |
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| 112 | # 96x71x19 standard configuration |
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| 113 | grid_resolution=48x36x19 |
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| 114 | |
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| 115 | hostname=`hostname` |
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| 116 | |
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| 117 | ########################################################################## |
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| 118 | # If installing on know machines such as IBM x3750 (Ada) |
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| 119 | # at IDRIS, don't check for available software and don"t install netcdf |
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| 120 | if [ ${hostname:0:5} = ada33 ] ; then |
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| 121 | netcdf=0 # no need to recompile netcdf, alreday available |
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| 122 | check_linux=0 |
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| 123 | pclinux=0 |
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| 124 | ioipsl=0 # no need to recompile ioipsl, already available |
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| 125 | #netcdf="/smplocal/pub/NetCDF/4.1.3" |
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| 126 | compilo="ifort" |
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| 127 | fmod='module ' |
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| 128 | if [ $real = r8 ] ; then OPTPREC="-real-size 64 -DNC_DOUBLE" ; fi |
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| 129 | OPTIM="-O2 -fp-model strict -ip -axAVX,SSE4.2 -align all " |
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| 130 | OPTIMGCM="$OPTIM $OPTPREC" |
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| 131 | fi |
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| 132 | ########################################################################## |
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| 133 | |
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| 134 | |
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| 135 | mkdir -p $MODEL |
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| 136 | echo $MODEL |
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| 137 | MODEL=`( cd $MODEL ; pwd )` # to get absolute path, if necessary |
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| 138 | |
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| 139 | |
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| 140 | |
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| 141 | # Option -fendian=big is only to be used with ARPEGE1D. |
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| 142 | # The -r8 should probably be avoided if running on 32 bit machines |
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| 143 | # Option r8 is not mandatory and generates larger executables. |
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| 144 | # It is however mandatory if using ARPEGE1D |
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| 145 | # Better optimization options might be a better choice (e.g. -O3) |
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| 146 | |
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| 147 | |
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| 148 | echo '################################################################' |
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| 149 | if [ "$check_linux" = 1 ] ; then |
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| 150 | echo Check if required software is available |
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| 151 | echo '################################################################' |
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| 152 | |
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| 153 | #### Ehouarn: test if ksh and/or bash are available |
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| 154 | use_shell="ksh" # default: use ksh |
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| 155 | if [ "`which ksh`" = "" ] ; then |
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| 156 | echo "no ksh ... we will use bash" |
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| 157 | use_shell="bash" |
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| 158 | if [ "`which bash`" = "" ] ; then |
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| 159 | echo "ksh (or bash) needed!! Install it!" |
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| 160 | fi |
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| 161 | fi |
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| 162 | |
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| 163 | |
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| 164 | for logiciel in csh wget tar gzip make $compilo gcc ; do |
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| 165 | if [ "`which $logiciel`" = "" ] ; then |
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| 166 | echo You must first install $logiciel on your system |
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| 167 | exit |
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| 168 | fi |
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| 169 | done |
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| 170 | |
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| 171 | if [ $pclinux = 1 ] ; then |
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| 172 | cd $MODEL |
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| 173 | cat <<eod> tt.f90 |
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| 174 | print*,'coucou' |
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| 175 | end |
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| 176 | eod |
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| 177 | $compilo tt.f90 -o a.out |
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| 178 | ./a.out >| tt |
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| 179 | if [ "`cat tt | sed -e 's/ //g' `" != "coucou" ] ; then |
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| 180 | echo problem installing with compiler $compilo ; exit ; fi |
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| 181 | \rm tt a.out tt.f90 |
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| 182 | fi |
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| 183 | fi |
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| 184 | |
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| 185 | ########################################################################### |
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| 186 | |
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| 187 | |
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| 188 | |
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| 189 | if [ $getlmdzor = 1 ] ; then |
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| 190 | echo '##########################################################' |
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| 191 | echo Download a slightly modified version of LMDZ |
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| 192 | echo '##########################################################' |
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| 193 | cd $MODEL |
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| 194 | wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/modipsl.$version.tar.gz |
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| 195 | gunzip modipsl.$version.tar.gz |
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| 196 | tar xvf modipsl.$version.tar |
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| 197 | \rm modipsl.$version.tar |
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| 198 | |
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| 199 | # We download LMDZ and make some modifications to make it |
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| 200 | #compatible with $compilo |
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| 201 | # and we use an old stable but robust and well tested version of ORCHIDEE |
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| 202 | # That version of ORCHIDEE can be obtained using |
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| 203 | # wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/getlmdzor.x |
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| 204 | fi |
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| 205 | |
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| 206 | echo OK1 |
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| 207 | |
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| 208 | if [ $netcdf = 1 ] ; then |
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| 209 | echo '##########################################################' |
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| 210 | echo Compiling the Netcdf library |
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| 211 | echo '##########################################################' |
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| 212 | cd $MODEL |
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| 213 | wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/netcdf-4.0.1.tar.gz |
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| 214 | gunzip netcdf-4.0.1.tar.gz |
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| 215 | tar xvf netcdf-4.0.1.tar |
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| 216 | \rm -f netcdf-4.0.1.tar |
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| 217 | |
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| 218 | cd netcdf-4.0.1 |
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| 219 | |
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| 220 | OPTIMNC=$OPTIM |
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| 221 | if [ $compilo = g95 ] ; then |
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| 222 | # Set the appropriate compilation options |
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| 223 | export FC=g95 |
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| 224 | export F90=g95 |
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| 225 | export F90FLAGS=" -cpp -ffree-form $OPTIMNC" |
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| 226 | export FFLAGS=" -cpp $OPTIMNC" |
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| 227 | export CPPFLAGS=-Df2cFortran |
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| 228 | export CC=gcc |
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| 229 | export CXX=g++ |
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| 230 | elif [ $compilo = gfortran ] ; then |
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| 231 | export FC=gfortran |
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| 232 | export F90=gfortran |
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| 233 | export F90FLAGS=" -ffree-form $OPTIMNC" |
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| 234 | export FFLAGS=" $OPTIMNC" |
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| 235 | export CPPFLAGS= |
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| 236 | export CC=gcc |
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| 237 | export CXX=g++ |
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| 238 | elif [ $compilo = pgf90 ] ; then |
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| 239 | export CPPFLAGS="-DNDEBUG -DpgiFortran" |
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| 240 | export CC=pgcc |
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| 241 | export CFLAGS="-Msignextend" |
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| 242 | export CXX=pgCC |
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| 243 | export CXXFLAGS="-Msignextend" |
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| 244 | export FC=pgf90 |
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| 245 | export FFLAGS="$OPTIMNC" |
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| 246 | export F90=pgf90 |
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| 247 | export F90FLAGS="$OPTIMNC" |
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| 248 | elif [ $compilo = ifort ] ; then |
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| 249 | export CPP="icc -E" |
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| 250 | export F77=ifort |
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| 251 | export FFLAGS="-O2 -ip -fpic -mcmodel=large" |
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| 252 | export F90=ifort |
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| 253 | export FCFLAGS="-O2 -ip -fpic -mcmodel=large" |
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| 254 | export CC=icc |
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| 255 | export CFLAGS="-O2 -ip -fpic -mcmodel=large" |
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| 256 | export CXX=icpc |
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| 257 | export CXXFLAGS="-O2 -ip -fpic -mcmodel=large" |
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| 258 | else |
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| 259 | echo unexpected compiler $compilo ; exit |
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| 260 | fi |
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| 261 | ## end of if [ $netcdf = 1 ] |
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| 262 | #cd src |
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| 263 | |
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| 264 | ### Correction d'un petit probleme de netcdf |
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| 265 | ##sed -e '83s/^$/\#define f2cFortran/' cfortran.h >| tmp ; \mv tmp cfortran.h |
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| 266 | |
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| 267 | # Compilation |
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| 268 | # Modif du 6 juillet 2009. Plantage quand on essaie de compiler netcdf avec |
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| 269 | # gcc plutôt que c++ |
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| 270 | ##sed -e 's/ c++/ gcc/g' configure >| tmp ; mv -f tmp configure ; chmod +x configure |
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| 271 | localdir=`pwd -P` |
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| 272 | ./configure --prefix=$localdir |
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| 273 | make check |
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| 274 | make install |
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| 275 | fi # of if [ $netcdf = 1 ] |
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| 276 | |
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| 277 | echo OK2 ioipsl=$ioipsl |
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| 278 | echo '##########################################################' |
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| 279 | echo 'Installing MODIPSL, the installation package manager for the ' |
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| 280 | echo 'IPSL models and tools' |
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| 281 | echo '##########################################################' |
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| 282 | |
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| 283 | if [ $netcdf = 0 -o $netcdf = 1 ] ; then |
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| 284 | ncdfdir=$MODEL/netcdf-4.0.1 |
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| 285 | else |
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| 286 | ncdfdir=$netcdf |
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| 287 | fi |
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| 288 | |
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| 289 | if [ $ioipsl = 1 ] ; then |
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| 290 | cd $MODEL/modipsl |
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| 291 | \rm -r lib/* |
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| 292 | |
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| 293 | cd util |
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| 294 | |
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| 295 | if [ $compilo = pgf90 ] ; then |
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| 296 | fmod='module ' |
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| 297 | elif [ $compilo = g95 ] ; then |
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| 298 | fmod='fmod=' |
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| 299 | elif [ $compilo = ifort ] ; then |
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| 300 | fmod='module ' |
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| 301 | else # gfortran |
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| 302 | fmod='I ' |
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| 303 | fi |
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| 304 | cp AA_make.gdef AA_make.orig |
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| 305 | sed -e 's/^\#.*.g95.*.\#.*.$/\#/' AA_make.gdef > tmp |
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| 306 | sed -e "s:F_L = g95:F_L = $compilo:" -e "s:F_C = g95 -c:F_C = $compilo -c": \ |
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| 307 | -e 's/g95.*.w_w.*.(F_D)/g95 w_w = '"$OPTIMGCM"'/' \ |
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| 308 | -e 's:g95.*.NCDF_INC.*.$:g95 NCDF_INC= '"$ncdfdir"'/include:' \ |
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| 309 | -e 's:g95.*.NCDF_LIB.*.$:g95 NCDF_LIB= -L'"$ncdfdir"'/lib -lnetcdf:' \ |
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| 310 | -e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \ |
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| 311 | -e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \ |
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| 312 | tmp >| AA_make.gdef |
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| 313 | |
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| 314 | |
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| 315 | if [ "$use_shell" = "ksh" ] ; then |
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| 316 | if [ "$pclinux" = 1 ] ; then |
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| 317 | ./ins_make -t g95 # We use lines for g95 even for the other compilers |
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| 318 | fi |
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| 319 | else # bash |
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| 320 | sed -e s:/bin/ksh:/bin/bash:g ins_make > ins_make.bash |
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| 321 | chmod u=rwx ins_make.bash |
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| 322 | if [ "$pclinux" = 1 ] ; then |
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| 323 | ./ins_make.bash -t g95 # We use lines for g95 even for the other compilers |
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| 324 | else |
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| 325 | ./ins_make.bash |
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| 326 | fi |
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| 327 | fi # of if [ "$use_shell" = "ksh" ] |
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| 328 | |
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| 329 | echo '##########################################################' |
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| 330 | echo 'Compiling IOIPSL, the interface library with Netcdf' |
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| 331 | echo '##########################################################' |
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| 332 | |
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| 333 | cd $MODEL/modipsl/modeles/IOIPSL/src |
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| 334 | if [ "$use_shell" = "bash" ] ; then |
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| 335 | cp Makefile Makefile.ksh |
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| 336 | sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile |
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| 337 | fi |
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| 338 | if [ "$pclinux" = 1 ] ; then |
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| 339 | # Build IOIPSL modules and library |
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| 340 | make clean |
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| 341 | make |
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| 342 | if [ $compilo = gfortran ] ; then # copy module files to lib |
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| 343 | cp -f *.mod ../../../lib |
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| 344 | fi |
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| 345 | # Build IOIPSL tools (ie: "rebuild", if present) |
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| 346 | if [ -f $MODEL/modipsl/modeles/IOIPSL/tools/rebuild ] ; then |
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| 347 | cd $MODEL/modipsl/modeles/IOIPSL/tools |
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| 348 | # adapt Makefile & rebuild script if in bash |
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| 349 | if [ "$use_shell" = "bash" ] ; then |
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| 350 | cp Makefile Makefile.ksh |
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| 351 | sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile |
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| 352 | cp rebuild rebuild.ksh |
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| 353 | sed -e 's:/bin/ksh:/bin/bash:g' \ |
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| 354 | -e 's:print -u2:echo:g' \ |
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| 355 | -e 's:print:echo:g' rebuild.ksh > rebuild |
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| 356 | fi |
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| 357 | make clean |
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| 358 | make |
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| 359 | fi |
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| 360 | fi # of if [ "$pclinux" = 1 ] |
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| 361 | |
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| 362 | else # of if [ $ioipsl = 1 ] |
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| 363 | if [ ${hostname:0:5} = ada33 ] ; then |
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| 364 | cd $MODEL/modipsl |
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| 365 | cd util |
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| 366 | |
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| 367 | cp AA_make.gdef AA_make.orig |
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| 368 | sed -e 's/^\#.*.g95.*.\#.*.$/\#/' AA_make.gdef > tmp |
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| 369 | sed -e "s:F_L = g95:F_L = $compilo:" -e "s:F_C = g95 -c:F_C = $compilo -c": \ |
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| 370 | -e 's/g95.*.w_w.*.(F_D)/g95 w_w = '"$OPTIMGCM"'/' \ |
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| 371 | -e 's:g95.*.NCDF_INC.*.$:g95 NCDF_INC= -I/smplocal/pub/HDF5/1.8.9/seq/include -I/smplocal/pub/NetCDF/4.1.3/include:' \ |
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| 372 | -e 's:g95.*.NCDF_LIB.*.$:g95 NCDF_LIB= -L/smplocal/pub/NetCDF/4.1.3/lib -lnetcdff -lnetcdf:' \ |
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| 373 | -e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \ |
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| 374 | -e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \ |
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| 375 | tmp >| AA_make.gdef |
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| 376 | |
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| 377 | ./ins_make -t g95 # We use lines for g95 even for the other compilers |
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| 378 | |
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| 379 | # on Ada, IOIPSL is already installed in ~rpsl035/IOIPSL_PLUS |
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| 380 | # so link it to current settings |
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| 381 | cd $MODEL/modipsl/modeles/ |
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| 382 | \rm -r -f IOIPSL |
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| 383 | ln -s ~rpsl035/IOIPSL_PLUS IOIPSL |
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| 384 | cd .. |
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| 385 | ln -s ~rpsl035/IOIPSL_PLUS/modipsl/bin/* bin/ |
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| 386 | ln -s ~rpsl035/IOIPSL_PLUS/modipsl/lib/* lib/ |
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| 387 | |
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| 388 | fi # of if [ ${hostname:0:5} = ada33 ] |
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| 389 | fi # of if [ $ioipsl = 1 ] |
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| 390 | |
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| 391 | if [ "$veget" = 1 ] ; then |
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| 392 | echo '########################################################' |
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| 393 | echo 'Compiling ORCHIDEE, the continental surfaces model ' |
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| 394 | echo '########################################################' |
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| 395 | cd $MODEL/modipsl/modeles/ORCHIDEE |
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| 396 | cd src_parameters |
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| 397 | # A trick to compile ORCHIDEE depending on if we are using real*4 or real*8 |
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| 398 | |
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| 399 | \cp reqdprec.$real reqdprec.f90 |
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| 400 | make |
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| 401 | if [ $compilo = gfortran ] ; then # copy module files to lib |
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| 402 | cp -f *.mod ../../../lib |
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| 403 | fi |
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| 404 | cd ../src_stomate |
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| 405 | make |
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| 406 | if [ $compilo = gfortran ] ; then # copy module files to lib |
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| 407 | cp -f *.mod ../../../lib |
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| 408 | fi |
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| 409 | cd ../src_sechiba |
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| 410 | make |
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| 411 | if [ $compilo = gfortran ] ; then # copy module files to lib |
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| 412 | cp -f *.mod ../../../lib |
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| 413 | fi |
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| 414 | fi # of if [ "$veget" = 1 ] |
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| 415 | |
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| 416 | # Ehouarn: it may be directory LMDZ4 or LMDZ5 depending on tar file... |
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| 417 | if [[ -d $MODEL/modipsl/modeles/LMDZ4 ]] ; then |
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| 418 | echo '##########################################################' |
|---|
| 419 | echo 'Compiling LMDZ4' |
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| 420 | echo '##########################################################' |
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| 421 | cd $MODEL/modipsl/modeles/LMDZ4 |
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| 422 | else |
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| 423 | if [[ -d $MODEL/modipsl/modeles/LMDZ5 ]] ; then |
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| 424 | echo '##########################################################' |
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| 425 | echo 'Compiling LMDZ5' |
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| 426 | echo '##########################################################' |
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| 427 | cd $MODEL/modipsl/modeles/LMDZ5 |
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| 428 | else |
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| 429 | echo "ERROR: No LMDZ4 (or LMDZ5) directory !!!" |
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| 430 | exit |
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| 431 | fi |
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| 432 | fi |
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| 433 | |
|---|
| 434 | ########################################################## |
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| 435 | # Traitement momentanne a cause d'un bug dans makegcm |
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| 436 | cp create_make_gcm create_make_gcm.orig |
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| 437 | nl=`sed -n -e /PROGRAM/= create_make_gcm.orig | tail -1` |
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| 438 | sed -e "$nl s/ PROGRA/PROGRA/" create_make_gcm.orig >| create_make_gcm |
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| 439 | |
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| 440 | #mv -f tmp crea |
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| 441 | if [ "$pclinux" = 1 ] ; then |
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| 442 | if [ $compilo = gfortran ] ; then |
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| 443 | sed \ |
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| 444 | -e 's:\#setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \ |
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| 445 | -e 's:\#setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \ |
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| 446 | -e 's:setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \ |
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| 447 | -e 's:setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \ |
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| 448 | -e 's/set FC_LINUX.*.$/set FC_LINUX='$compilo'/' \ |
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| 449 | -e 's/g95/gfortran/g' \ |
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| 450 | -e 's/-fmod=/-I/g' \ |
|---|
| 451 | -e 's/-fno-second-underscore//' -e 's/-fstatic//' \ |
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| 452 | -e 's/-lparallel//' \ |
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| 453 | -e 's/-lnetcdff//g' \ |
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| 454 | -e 's/-lorglob//' \ |
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| 455 | -e 's/-ffixed-form//' -e 's/-ffree-form//' \ |
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| 456 | -e 's/set OPT_LINUX.*.$/set OPT_LINUX=\"'"$OPTIMGCM"\"'/' makegcm.orig >| makegcm |
|---|
| 457 | elif [ $compilo = ifort ] ; then |
|---|
| 458 | sed \ |
|---|
| 459 | -e 's:\#setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \ |
|---|
| 460 | -e 's:\#setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \ |
|---|
| 461 | -e 's:setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \ |
|---|
| 462 | -e 's:setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \ |
|---|
| 463 | -e 's/set FC_LINUX.*.$/set FC_LINUX='$compilo'/' \ |
|---|
| 464 | -e 's/g95/ifort/g' \ |
|---|
| 465 | -e 's/-fmod=/-module /g' \ |
|---|
| 466 | -e 's/-fno-second-underscore//' -e 's/-fstatic//' \ |
|---|
| 467 | -e 's/-lparallel//' \ |
|---|
| 468 | -e 's/-lnetcdff//g' \ |
|---|
| 469 | -e 's/-lorglob//' \ |
|---|
| 470 | -e 's/-ffixed-form//' -e 's/-ffree-form//' \ |
|---|
| 471 | -e 's/set OPT_LINUX.*.$/set OPT_LINUX=\"'"$OPTIMGCM"\"'/' makegcm.orig >| makegcm |
|---|
| 472 | else # g95 or pgf90 |
|---|
| 473 | sed \ |
|---|
| 474 | -e 's:\#setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \ |
|---|
| 475 | -e 's:\#setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \ |
|---|
| 476 | -e 's:setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \ |
|---|
| 477 | -e 's:setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \ |
|---|
| 478 | -e 's/set FC_LINUX.*.$/set FC_LINUX='$compilo'/' \ |
|---|
| 479 | -e 's/-fno-second-underscore//' -e 's/-fstatic//' \ |
|---|
| 480 | -e 's/-lparallel//' \ |
|---|
| 481 | -e 's/-lnetcdff//g' \ |
|---|
| 482 | -e 's/-lorglob//' \ |
|---|
| 483 | -e 's/-ffixed-form//' -e 's/-ffree-form//' \ |
|---|
| 484 | -e 's/set OPT_LINUX.*.$/set OPT_LINUX=\"'"$OPTIMGCM"\"'/' makegcm.orig >| makegcm |
|---|
| 485 | fi |
|---|
| 486 | else |
|---|
| 487 | sed \ |
|---|
| 488 | -e 's/-lparallel//' \ |
|---|
| 489 | -e 's/-lorglob//' \ |
|---|
| 490 | -e 's/-lsxorglob//' \ |
|---|
| 491 | -e 's/-lsxparallel//' \ |
|---|
| 492 | -e 's/-lsxioipsl/-lioipsl/g' \ |
|---|
| 493 | makegcm.orig >| makegcm |
|---|
| 494 | fi |
|---|
| 495 | |
|---|
| 496 | chmod +x makegcm |
|---|
| 497 | |
|---|
| 498 | ########################################################### |
|---|
| 499 | # For those who want to use fcm to compile via : |
|---|
| 500 | # makelmdz_fcm -arch local ..... |
|---|
| 501 | ############################################################ |
|---|
| 502 | |
|---|
| 503 | if [ "$pclinux" = 1 ] ; then |
|---|
| 504 | # create local 'arch' files (if on Linux PC): |
|---|
| 505 | cd arch |
|---|
| 506 | # arch-local.path file |
|---|
| 507 | echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdf\"" > arch-local.path |
|---|
| 508 | echo "NETCDF_INCDIR=-I${ncdfdir}/include" >> arch-local.path |
|---|
| 509 | echo 'IOIPSL_INCDIR=$LMDGCM/../../lib' >> arch-local.path |
|---|
| 510 | echo 'IOIPSL_LIBDIR=$LMDGCM/../../lib' >> arch-local.path |
|---|
| 511 | echo 'ORCH_INCDIR=$LMDGCM/../../lib' >> arch-local.path |
|---|
| 512 | echo 'ORCH_LIBDIR=$LMDGCM/../../lib' >> arch-local.path |
|---|
| 513 | # arch-local.fcm file (adapted from arch-linux-32bit.fcm) |
|---|
| 514 | if [ $compilo = g95 ] ; then |
|---|
| 515 | sed -e s:"%COMPILER pgf95":"%COMPILER g95":1 \ |
|---|
| 516 | -e s:"%LINK pgf95":"%LINK g95":1 \ |
|---|
| 517 | -e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \ |
|---|
| 518 | -e s:"%DEV_FFLAGS -g -O1":"%DEV_FFLAGS -g -O1 -Wall":1 \ |
|---|
| 519 | -e s:"%DEBUG_FFLAGS -g -O0 -Kieee -Ktrap=fp -Mbounds":"%DEBUG_FFLAGS -g -O0 -Wall -ftrace=full -fbounds-check -freal=nan":1 \ |
|---|
| 520 | -e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \ |
|---|
| 521 | arch-linux-32bit.fcm > arch-local.fcm |
|---|
| 522 | if [ $real = r8 ] ; then |
|---|
| 523 | sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \ |
|---|
| 524 | arch-local.fcm > arch-local.fcm.new |
|---|
| 525 | mv -f arch-local.fcm.new arch-local.fcm |
|---|
| 526 | fi |
|---|
| 527 | elif [ $compilo = gfortran ] ; then |
|---|
| 528 | sed -e s:"%COMPILER pgf95":"%COMPILER gfortran":1 \ |
|---|
| 529 | -e s:"%LINK pgf95":"%LINK gfortran":1 \ |
|---|
| 530 | -e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \ |
|---|
| 531 | -e s:"%DEV_FFLAGS -g -O1":"%DEV_FFLAGS -Wall -fbounds-check":1 \ |
|---|
| 532 | -e s:"%DEBUG_FFLAGS -g -O0 -Kieee -Ktrap=fp -Mbounds":"%DEBUG_FFLAGS -g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all":1 \ |
|---|
| 533 | -e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \ |
|---|
| 534 | arch-linux-32bit.fcm > arch-local.fcm |
|---|
| 535 | if [ $real = r8 ] ; then |
|---|
| 536 | sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \ |
|---|
| 537 | arch-local.fcm > arch-local.fcm.new |
|---|
| 538 | mv -f arch-local.fcm.new arch-local.fcm |
|---|
| 539 | fi |
|---|
| 540 | elif [ $compilo = pgf90 ] ; then |
|---|
| 541 | sed -e s:"-Wl,-Bstatic -L/usr/lib/gcc-lib/i386-linux/2.95.2":" ":1 \ |
|---|
| 542 | -e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \ |
|---|
| 543 | -e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \ |
|---|
| 544 | arch-linux-32bit.fcm > arch-local.fcm |
|---|
| 545 | if [ $real = r8 ] ; then |
|---|
| 546 | sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \ |
|---|
| 547 | arch-local.fcm > arch-local.fcm.new |
|---|
| 548 | mv -f arch-local.fcm.new arch-local.fcm |
|---|
| 549 | fi |
|---|
| 550 | elif [ $compilo = ifort ] ; then |
|---|
| 551 | sed -e s:"%COMPILER pgf95":"%COMPILER ifort":1 \ |
|---|
| 552 | -e s:"%LINK pgf95":"%LINK ifort":1 \ |
|---|
| 553 | -e s:"-Wl,-Bstatic -L/usr/lib/gcc-lib/i386-linux/2.95.2":" ":1 \ |
|---|
| 554 | -e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \ |
|---|
| 555 | -e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \ |
|---|
| 556 | -e s:"%DEV_FFLAGS -g -O1":"%DEV_FFLAGS -p -g -O2 -traceback -fp-stack-check -ftrapuv -check":1 \ |
|---|
| 557 | -e s:"%DEBUG_FFLAGS -g -O0 -Kieee -Ktrap=fp -Mbounds":"%DEBUG_FFLAGS -g -no-ftz -traceback -ftrapuv -fp-stack-check -check":1 \ |
|---|
| 558 | arch-linux-32bit.fcm > arch-local.fcm |
|---|
| 559 | if [ $real = r8 ] ; then |
|---|
| 560 | sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \ |
|---|
| 561 | arch-local.fcm > arch-local.fcm.new |
|---|
| 562 | mv -f arch-local.fcm.new arch-local.fcm |
|---|
| 563 | fi |
|---|
| 564 | else |
|---|
| 565 | echo Unexpected compiler $compilo ; exit |
|---|
| 566 | fi # of if [ $compilo = g95 ] elif [ $compilo = pgf90 ] |
|---|
| 567 | cd .. |
|---|
| 568 | ### Adapt "bld.cfg" (add the shell): |
|---|
| 569 | whereisthatshell=$(which ${use_shell}) |
|---|
| 570 | echo "bld::tool::SHELL $whereisthatshell" >> bld.cfg |
|---|
| 571 | |
|---|
| 572 | fi # of if [ "$pclinux" = 1 ] |
|---|
| 573 | |
|---|
| 574 | |
|---|
| 575 | cd $MODEL/modipsl/modeles/LMDZ? |
|---|
| 576 | |
|---|
| 577 | ### Modify makelmdz_fcm and makelmdz to use ORCHIDEE in the bench: |
|---|
| 578 | ### remove liborglob.a and libparallel.a |
|---|
| 579 | cp makelmdz_fcm makelmdz_fcm.orig |
|---|
| 580 | sed -e "s/-l\${LIBPREFIX}parallel//g" \ |
|---|
| 581 | sed -e "s/-l\${LIBPREFIX}orglob//g" \ |
|---|
| 582 | makelmdz_fcm.orig > makelmdz_fcm |
|---|
| 583 | cp makelmdz makelmdz.orig |
|---|
| 584 | sed -e "s/-l\${LIBPREFIX}parallel//g" \ |
|---|
| 585 | sed -e "s/-l\${LIBPREFIX}orglob//g" \ |
|---|
| 586 | makelmdz.orig > makelmdz |
|---|
| 587 | |
|---|
| 588 | |
|---|
| 589 | ################################################################## |
|---|
| 590 | # Compile LMDZ |
|---|
| 591 | ################################################################## |
|---|
| 592 | ok_veget=false |
|---|
| 593 | if [ "$veget" = 1 ] ; then $ok_veget = true ; fi |
|---|
| 594 | if [ $compile_with_fcm = 1 ] ; then |
|---|
| 595 | # Compile with makelmdz_fcm |
|---|
| 596 | if [ "$pclinux" = 1 ] ; then |
|---|
| 597 | ./makelmdz_fcm -d ${grid_resolution} -arch local -v $ok_veget gcm |
|---|
| 598 | else |
|---|
| 599 | # we are on Ada |
|---|
| 600 | ./makelmdz_fcm -d ${grid_resolution} -arch X64_ADA -v $ok_veget gcm |
|---|
| 601 | fi |
|---|
| 602 | else |
|---|
| 603 | # Comple with makegcm: |
|---|
| 604 | # 3 times! because some dependecies are not well resolved with makegcm |
|---|
| 605 | ./makegcm -d ${grid_resolution} -v $ok_veget gcm |
|---|
| 606 | ./makegcm -d ${grid_resolution} -v $ok_veget gcm |
|---|
| 607 | ./makegcm -d ${grid_resolution} -v $ok_veget gcm |
|---|
| 608 | fi |
|---|
| 609 | |
|---|
| 610 | if [ -f gcm.e ] || [ -f bin/gcm_${grid_resolution}_phylmd_seq_orch.e ] || [ -f bin/gcm_${grid_resolution}_phylmd_seq.e ] ; then |
|---|
| 611 | echo '##########################################################' |
|---|
| 612 | echo 'Compilation successfull !! ' |
|---|
| 613 | echo '##########################################################' |
|---|
| 614 | else |
|---|
| 615 | echo 'Compilation failed !!' |
|---|
| 616 | exit |
|---|
| 617 | fi |
|---|
| 618 | |
|---|
| 619 | ################################################################## |
|---|
| 620 | # Below, we run a benchmark test (if bench=0) |
|---|
| 621 | ################################################################## |
|---|
| 622 | if [ $bench = 0 ] ; then |
|---|
| 623 | exit |
|---|
| 624 | fi |
|---|
| 625 | |
|---|
| 626 | echo '##########################################################' |
|---|
| 627 | echo ' Running a test run ' |
|---|
| 628 | echo '##########################################################' |
|---|
| 629 | |
|---|
| 630 | \rm -r BENCH${grid_resolution} |
|---|
| 631 | bench=bench_lmdz_${grid_resolution} |
|---|
| 632 | wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/$bench.tar.gz |
|---|
| 633 | gunzip $bench.tar.gz |
|---|
| 634 | tar xvf $bench.tar |
|---|
| 635 | |
|---|
| 636 | if [ -f gcm.e ] ; then |
|---|
| 637 | cp gcm.e BENCH${grid_resolution}/ |
|---|
| 638 | elif [ -f bin/gcm_${grid_resolution}_phylmd_seq_orch.e ] ; then |
|---|
| 639 | cp bin/gcm_${grid_resolution}_phylmd_seq_orch.e BENCH${grid_resolution}/gcm.e |
|---|
| 640 | elif [ -f bin/gcm_${grid_resolution}_phylmd_seq.e ] ; then |
|---|
| 641 | cp bin/gcm_${grid_resolution}_phylmd_seq.e BENCH${grid_resolution}/gcm.e |
|---|
| 642 | else |
|---|
| 643 | echo "No gcm.e found" |
|---|
| 644 | exit |
|---|
| 645 | fi |
|---|
| 646 | |
|---|
| 647 | cd BENCH${grid_resolution} |
|---|
| 648 | ./bench.sh > bench.out 2>&1 |
|---|
| 649 | |
|---|
| 650 | echo '##########################################################' |
|---|
| 651 | echo ' Bench results ' |
|---|
| 652 | echo '##########################################################' |
|---|
| 653 | |
|---|
| 654 | cat ./bench.out |
|---|
| 655 | |
|---|
| 656 | echo '##########################################################' |
|---|
| 657 | echo 'Simulation finished in' `pwd` |
|---|
| 658 | echo 'You may re-run it with : cd ' `pwd` ' ; gcm.e' |
|---|
| 659 | echo 'or ./bench.sh' |
|---|
| 660 | echo '##########################################################' |
|---|
| 661 | |
|---|
