source: BOL/script_install/install.sh @ 1800

Last change on this file since 1800 was 1800, checked in by Laurent Fairhead, 11 years ago

Updates and cleanup on install.sh script.
FH
File size: 22.4 KB
Line 
1#!/bin/bash
2
3###########################################################################
4# Author : Frédéric Hourdin/LMD/hourdin@lmd.jussieu.fr
5# Usage  : install.sh
6#
7# bash installation script of the LMDZ model on a Linux PC.
8# the model is downloaded in the following direcory tree
9# $MODEL/modipsl/modeles/...
10# using the "modipsl" infrastructure created by the "IPSL"
11# for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling
12# activities.
13# Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE)
14# components.
15#
16# The sources of the models can be found in the "modeles" directory.
17# In the present case, LMDZ5, ORCHIDEE and IOIPSL (handling of input-outputs
18# using the NetCDF library.
19#
20# The script downloads various source files (including a version of NetCDF)
21# and utilities, compiles the model, and runs a test simulation in a
22# munimal configuration.
23#
24# Prerequisites : g95/pgf90/gfortran, ksh, wget , gunzip, tar, ...
25#
26# Modif 18/11/2011
27#    changes for option real 8.
28#      We comopile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM
29#      but with -r4 for netcdf. Variable real must be set to
30#      r4 or r8 at the beginning of the script below.
31#
32###########################################################################
33
34echo '################################################################'
35echo  Choice of installation options
36echo '################################################################'
37
38
39#real=r4
40real=r8
41
42# WARNING !!!! For versions before october 2009, use
43# install.v2.sh instead of install.sh
44
45version=20130716.trunk
46version=testing
47
48#Chemin pour placer le modele
49MODEL=./LMDZ$version
50
51getlmdzor=1
52netcdf=1   #  1 for automatic installation
53           #  0 for no installation
54           #  /.../../netcdf-4.0.1 if wanting to link with an already
55           #  compiled netcdf library (implies to check option compatibility)
56check_linux=1
57ioipsl=1
58veget=1
59bench=1
60pclinux=1
61compilo=gfortran # compilo=pgf90 or g95 or gfortran or ifort sur PC linux
62
63
64#####################################################################
65# Test for old gfortran compilers
66if [ $compilo = gfortran ] ; then
67   gfortranv=`gfortran --version | \
68   head -1 | awk ' { print $NF } ' | awk -F. ' { print $1 * 10 + $2 } '`
69   if [ $gfortranv -le 43 ] ; then
70       echo ERROR : Your gfortran compiler is too old
71       echo 'Please choose a new one (g95, ifort) and change the line'
72       echo compilo=xxx
73       echo in the install.sh script and rerun it
74       exit
75   fi
76fi
77#####################################################################
78
79
80
81## compile_with_fcm=1 : use makelmdz_fcm, possible a of version 20111103.trunk (LMDZ5/trunk rev 1578)
82## compile_with_fcm=0 : use makelmdz
83compile_with_fcm=0
84
85OPTPREC=""
86echo '################################################################'
87echo  Choix des options de compilation
88echo '################################################################'
89
90if [ $compilo = g95 ] ; then
91   if [ $real = r8 ] ; then OPTPREC="-r8 -DNC_DOUBLE" ; fi
92   OPTIM='-i4 -O3'
93elif [ $compilo = gfortran ] ; then
94   if [ $real = r8 ] ; then OPTPREC="-fdefault-real-8 -DNC_DOUBLE" ; fi
95   OPTIM='-O3'
96elif [ $compilo = pgf90 ] ; then
97   if [ $real = r8 ] ; then OPTPREC="-r8 -DNC_DOUBLE" ; fi
98   OPTIM='-O2 -Munroll -Mnoframe -Mautoinline -Mcache_align'
99   # with pgf90, compile with fcm
100   compile_with_fcm=1
101else 
102   # ifort
103   if [ $real = r8 ] ; then OPTPREC="-real-size 64 -DNC_DOUBLE" ; fi
104   OPTIM="-O2 -fp-model strict -ip -align all "
105   # with ifort, compile with fcm
106   compile_with_fcm=1
107fi
108OPTIMGCM="$OPTIM $OPTPREC"
109
110# choose the resolution for the bench runs
111# grid_resolution= 32x24x11 or 48x36x19 for tests (test without ORCHIDEE)
112#                  96x71x19  standard configuration
113grid_resolution=48x36x19
114
115hostname=`hostname`
116
117##########################################################################
118# If installing on know machines such as IBM x3750 (Ada)
119# at IDRIS, don't check for available software and don"t install netcdf
120if [ ${hostname:0:5} = ada33 ] ; then
121  netcdf=0 # no need to recompile netcdf, alreday available
122  check_linux=0
123  pclinux=0
124  ioipsl=0 # no need to recompile ioipsl, already available
125  #netcdf="/smplocal/pub/NetCDF/4.1.3"
126  compilo="ifort"
127  fmod='module '
128  if [ $real = r8 ] ; then OPTPREC="-real-size 64 -DNC_DOUBLE" ; fi
129  OPTIM="-O2 -fp-model strict -ip -axAVX,SSE4.2 -align all "
130  OPTIMGCM="$OPTIM $OPTPREC"
131fi
132##########################################################################
133
134
135mkdir -p $MODEL
136echo $MODEL
137MODEL=`( cd $MODEL ; pwd )` # to get absolute path, if necessary
138
139
140
141# Option -fendian=big is only to be used with ARPEGE1D.
142# The -r8 should probably be avoided if running on 32 bit machines
143# Option r8 is not mandatory and generates larger executables.
144# It is however mandatory if using ARPEGE1D
145# Better optimization options might be a better choice (e.g. -O3)
146
147
148echo '################################################################'
149if [ "$check_linux" = 1 ] ; then
150echo   Check if required software is available
151echo '################################################################'
152
153#### Ehouarn: test if ksh and/or bash are available
154use_shell="ksh" # default: use ksh
155if [ "`which ksh`" = "" ] ; then
156  echo "no ksh ... we will use bash"
157  use_shell="bash"
158  if [ "`which bash`" = "" ] ; then
159    echo "ksh (or bash) needed!! Install it!"
160  fi
161fi
162
163
164for logiciel in csh wget tar gzip make $compilo gcc ; do
165if [ "`which $logiciel`" = "" ] ; then
166echo You must first install $logiciel on your system
167exit
168fi
169done
170
171if [ $pclinux = 1 ] ; then
172cd $MODEL
173cat <<eod> tt.f90
174print*,'coucou'
175end
176eod
177$compilo tt.f90 -o a.out
178./a.out >| tt
179if [ "`cat tt | sed -e 's/ //g' `" != "coucou" ] ; then
180echo problem installing with compiler $compilo ; exit ; fi
181\rm tt a.out tt.f90
182fi
183fi
184
185###########################################################################
186
187
188
189if [ $getlmdzor = 1 ] ; then
190echo '##########################################################'
191echo  Download a slightly modified version of  LMDZ
192echo '##########################################################'
193cd $MODEL
194wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/modipsl.$version.tar.gz
195gunzip modipsl.$version.tar.gz
196tar xvf modipsl.$version.tar
197\rm modipsl.$version.tar
198
199# We download LMDZ and make some modifications to make it
200#compatible with $compilo
201# and we use an old stable but robust and well tested version of ORCHIDEE
202# That version of ORCHIDEE can be obtained using
203# wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/getlmdzor.x
204fi
205
206echo OK1
207
208if [ $netcdf = 1 ] ; then
209echo '##########################################################'
210echo Compiling the Netcdf library
211echo '##########################################################'
212cd $MODEL
213wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/netcdf-4.0.1.tar.gz
214gunzip netcdf-4.0.1.tar.gz
215tar xvf netcdf-4.0.1.tar
216\rm -f netcdf-4.0.1.tar
217
218cd netcdf-4.0.1
219
220OPTIMNC=$OPTIM
221if [ $compilo = g95 ] ; then
222# Set the appropriate compilation options
223   export FC=g95
224   export F90=g95
225   export F90FLAGS=" -cpp -ffree-form $OPTIMNC"
226   export FFLAGS=" -cpp $OPTIMNC"
227   export CPPFLAGS=-Df2cFortran
228   export CC=gcc
229   export CXX=g++
230elif [ $compilo = gfortran ] ; then
231   export FC=gfortran
232   export F90=gfortran
233   export F90FLAGS=" -ffree-form $OPTIMNC"
234   export FFLAGS=" $OPTIMNC"
235   export CPPFLAGS=
236   export CC=gcc
237   export CXX=g++
238elif [ $compilo = pgf90 ] ; then
239   export CPPFLAGS="-DNDEBUG -DpgiFortran"
240   export CC=pgcc
241   export CFLAGS="-Msignextend"
242   export CXX=pgCC
243   export CXXFLAGS="-Msignextend"
244   export FC=pgf90
245   export FFLAGS="$OPTIMNC"
246   export F90=pgf90
247   export F90FLAGS="$OPTIMNC"
248elif [ $compilo = ifort ] ; then
249   export CPP="icc -E"
250   export F77=ifort
251   export FFLAGS="-O2 -ip -fpic -mcmodel=large"
252   export F90=ifort
253   export FCFLAGS="-O2 -ip -fpic -mcmodel=large"
254   export CC=icc
255   export CFLAGS="-O2 -ip -fpic -mcmodel=large"
256   export CXX=icpc
257   export CXXFLAGS="-O2 -ip -fpic -mcmodel=large"
258else
259   echo unexpected compiler $compilo ; exit
260fi
261
262localdir=`pwd -P`
263./configure --prefix=$localdir
264make check
265make install
266fi # of if [ $netcdf = 1 ]
267
268#=======================================================================================
269echo OK2 ioipsl=$ioipsl
270echo '##########################################################'
271echo 'Installing MODIPSL, the installation package manager for the '
272echo 'IPSL models and tools'
273echo '##########################################################'
274
275if [ $netcdf = 0 -o $netcdf = 1 ] ; then
276ncdfdir=$MODEL/netcdf-4.0.1
277else
278ncdfdir=$netcdf
279fi
280
281if [ $ioipsl = 1 ] ; then
282  cd $MODEL/modipsl
283  \rm -r lib/*
284
285  cd util
286
287  if [ $compilo = pgf90 ] ; then 
288    fmod='module '
289  elif [ $compilo = g95 ] ; then
290    fmod='fmod='
291  elif [ $compilo = ifort ] ; then
292    fmod='module '
293  else # gfortran
294    fmod='I '
295  fi
296  cp AA_make.gdef AA_make.orig
297  F_C="$compilo -c " ; if [ $compilo = gfortran ] ; then F_C="$compilo -c -cpp " ; fi
298  sed -e 's/^\#.*.g95.*.\#.*.$/\#/' AA_make.gdef > tmp
299  sed -e "s:F_L = g95:F_L = $compilo:" -e "s:F_C = g95 -c:F_C = $F_C": \
300  -e 's/g95.*.w_w.*.(F_D)/g95      w_w = '"$OPTIMGCM"'/' \
301  -e 's:g95.*.NCDF_INC.*.$:g95      NCDF_INC= '"$ncdfdir"'/include:' \
302  -e 's:g95.*.NCDF_LIB.*.$:g95      NCDF_LIB= -L'"$ncdfdir"'/lib -lnetcdf:' \
303  -e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \
304  -e 's:#-Q- g95      M_K = gmake:#-Q- g95      M_K = make:' \
305  tmp >| AA_make.gdef
306
307
308  if [ "$use_shell" = "ksh" ] ; then
309    if [ "$pclinux" = 1 ] ; then
310       ./ins_make -t g95 # We use lines for g95 even for the other compilers
311    fi
312  else # bash
313    sed -e s:/bin/ksh:/bin/bash:g ins_make > ins_make.bash
314    chmod u=rwx ins_make.bash
315    if [ "$pclinux" = 1 ] ; then
316    ./ins_make.bash -t g95 # We use lines for g95 even for the other compilers
317    else
318    ./ins_make.bash
319    fi
320  fi # of if [ "$use_shell" = "ksh" ]
321
322  echo '##########################################################'
323  echo 'Compiling IOIPSL, the interface library with Netcdf'
324  echo '##########################################################'
325
326  cd $MODEL/modipsl/modeles/IOIPSL/src
327  if [ "$use_shell" = "bash" ] ; then
328    cp Makefile Makefile.ksh
329    sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
330  fi
331  if [ "$pclinux" = 1 ] ; then
332    # Build IOIPSL modules and library
333    if [ $compilo = g95 ] ; then
334       cp restcom.f90 restcom.f90.orig
335       sed -e 's:cmode=or(NF90_NOCLOBBER,NF90_64BIT_OFFSET):cmode=NF90_NOCLOBBER:' restcom.f90.orig > restcom.f90 
336    fi
337    make clean
338    make
339    if [ $compilo = gfortran ] ; then # copy module files to lib
340      cp -f *.mod ../../../lib
341    fi
342    # Build IOIPSL tools (ie: "rebuild", if present)
343    if [ -f $MODEL/modipsl/modeles/IOIPSL/tools/rebuild ] ; then
344      cd $MODEL/modipsl/modeles/IOIPSL/tools
345      # adapt Makefile & rebuild script if in bash
346      if [ "$use_shell" = "bash" ] ; then
347        cp Makefile Makefile.ksh
348        sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
349        cp rebuild rebuild.ksh
350        sed -e 's:/bin/ksh:/bin/bash:g' \
351            -e 's:print -u2:echo:g' \
352            -e 's:print:echo:g' rebuild.ksh > rebuild
353      fi
354      make clean
355      make
356    fi
357  fi # of if [ "$pclinux" = 1 ]
358
359else # of if [ $ioipsl = 1 ]
360  if [ ${hostname:0:5} = ada33 ] ; then
361    cd $MODEL/modipsl
362    cd util
363
364    cp AA_make.gdef AA_make.orig
365    sed -e 's/^\#.*.g95.*.\#.*.$/\#/' AA_make.gdef > tmp
366    sed -e "s:F_L = g95:F_L = $compilo:" -e "s:F_C = g95 -c:F_C = $compilo -c": \
367    -e 's/g95.*.w_w.*.(F_D)/g95      w_w = '"$OPTIMGCM"'/' \
368    -e 's:g95.*.NCDF_INC.*.$:g95      NCDF_INC= -I/smplocal/pub/HDF5/1.8.9/seq/include -I/smplocal/pub/NetCDF/4.1.3/include:' \
369    -e 's:g95.*.NCDF_LIB.*.$:g95      NCDF_LIB= -L/smplocal/pub/NetCDF/4.1.3/lib -lnetcdff -lnetcdf:' \
370    -e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \
371    -e 's:#-Q- g95      M_K = gmake:#-Q- g95      M_K = make:' \
372    tmp >| AA_make.gdef
373
374    ./ins_make -t g95 # We use lines for g95 even for the other compilers
375
376    # on Ada, IOIPSL is already installed in ~rpsl035/IOIPSL_PLUS
377    # so link it to current settings
378    cd $MODEL/modipsl/modeles/
379    \rm -r -f IOIPSL
380    ln -s ~rpsl035/IOIPSL_PLUS IOIPSL
381    cd ..
382    ln -s ~rpsl035/IOIPSL_PLUS/modipsl/bin/* bin/
383    ln -s ~rpsl035/IOIPSL_PLUS/modipsl/lib/* lib/
384
385  fi # of if [ ${hostname:0:5} = ada33 ]
386fi # of if [ $ioipsl = 1 ]
387
388#============================================================================
389if [ "$veget" = 1 ] ; then
390  echo '########################################################'
391  echo 'Compiling ORCHIDEE, the continental surfaces model '
392  echo '########################################################'
393  cd $MODEL/modipsl/modeles/ORCHIDEE
394  echo OKpwd ; pwd
395  if [ -d src_parallel ] ; then
396     liste_src="parallel parameters global stomate sechiba driver"
397  else
398     # Obsolete, for ORCHIDEE_beton only
399     liste_src="parameters stomate sechiba "
400     # A trick to compile ORCHIDEE depending on if we are using real*4 or real*8
401     cd src_parameters ; \cp reqdprec.$real reqdprec.f90 ; cd ..
402  fi
403  echo liste_strc $liste_src
404
405  for d in $liste_src ; do src_d=src_$d
406      echo src_d $src_d
407      echo ls ; ls
408      if [ ! -d $src_d ] ; then echo Problem orchidee : no $src_d ; exit ; fi
409      cd $src_d ; \rm -f *.mod make ; make clean
410      make ; if [ $compilo = gfortran ] ; then cp -f *.mod ../../../lib ; fi
411      cd ..
412  done
413fi # of if [ "$veget" = 1 ]
414
415#============================================================================
416# Ehouarn: it may be directory LMDZ4 or LMDZ5 depending on tar file...
417if [ -d $MODEL/modipsl/modeles/LMDZ[45] ] ; then
418  echo '##########################################################'
419  echo 'Compiling LMDZ'
420  echo '##########################################################'
421  cd $MODEL/modipsl/modeles/LMDZ[45]
422else
423  echo "ERROR: No LMDZ4 (or LMDZ5) directory !!!"
424  exit
425fi
426
427#============================================================================
428# Traitement momentanne a cause d'un bug dans makegcm
429cp create_make_gcm create_make_gcm.orig
430nl=`sed -n -e /PROGRAM/= create_make_gcm.orig | tail -1`
431sed -e "$nl s/      PROGRA/PROGRA/" create_make_gcm.orig >| create_make_gcm
432
433#mv -f tmp crea
434if [ "$pclinux" = 1 ] ; then
435  if [ $compilo = gfortran ] ; then
436sed \
437-e 's:\#setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
438-e 's:\#setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
439-e 's:setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
440-e 's:setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
441-e 's/set FC_LINUX.*.$/set FC_LINUX='$compilo'/' \
442-e 's/g95/gfortran/g' \
443-e 's/-fmod=/-I/g' \
444-e 's/-fno-second-underscore//' -e 's/-fstatic//' \
445-e 's/-lparallel//' \
446-e 's/-lnetcdff//g' \
447-e 's/-lorglob//' \
448-e 's/-ffixed-form//' -e 's/-ffree-form//' \
449-e 's/set OPT_LINUX.*.$/set OPT_LINUX=\"'"$OPTIMGCM"\"'/' makegcm.orig >| makegcm
450  elif [ $compilo = ifort ] ; then
451sed \
452-e 's:\#setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
453-e 's:\#setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
454-e 's:setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
455-e 's:setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
456-e 's/set FC_LINUX.*.$/set FC_LINUX='$compilo'/' \
457-e 's/g95/ifort/g' \
458-e 's/-fmod=/-module /g' \
459-e 's/-fno-second-underscore//' -e 's/-fstatic//' \
460-e 's/-lparallel//' \
461-e 's/-lnetcdff//g' \
462-e 's/-lorglob//' \
463-e 's/-ffixed-form//' -e 's/-ffree-form//' \
464-e 's/set OPT_LINUX.*.$/set OPT_LINUX=\"'"$OPTIMGCM"\"'/' makegcm.orig >| makegcm
465  else # g95 or pgf90
466sed \
467-e 's:\#setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
468-e 's:\#setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
469-e 's:setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
470-e 's:setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
471-e 's/set FC_LINUX.*.$/set FC_LINUX='$compilo'/' \
472-e 's/-fno-second-underscore//' -e 's/-fstatic//' \
473-e 's/-lparallel//' \
474-e 's/-lnetcdff//g' \
475-e 's/-lorglob//' \
476-e 's/-ffixed-form//' -e 's/-ffree-form//' \
477-e 's/set OPT_LINUX.*.$/set OPT_LINUX=\"'"$OPTIMGCM"\"'/' makegcm.orig >| makegcm
478  fi
479else
480sed \
481-e 's/-lparallel//' \
482-e 's/-lorglob//' \
483-e 's/-lsxorglob//' \
484-e 's/-lsxparallel//' \
485-e 's/-lsxioipsl/-lioipsl/g' \
486makegcm.orig >| makegcm
487fi
488
489chmod +x makegcm
490
491###########################################################
492# For those who want to use fcm to compile via :
493#  makelmdz_fcm -arch local .....
494############################################################
495
496if [ "$pclinux" = 1 ] ; then
497# create local 'arch' files (if on Linux PC):
498cd arch
499# arch-local.path file
500echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdf\"" > arch-local.path
501echo "NETCDF_INCDIR=-I${ncdfdir}/include" >> arch-local.path
502echo 'IOIPSL_INCDIR=$LMDGCM/../../lib' >> arch-local.path
503echo 'IOIPSL_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
504echo 'ORCH_INCDIR=$LMDGCM/../../lib' >> arch-local.path
505echo 'ORCH_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
506# arch-local.fcm file (adapted from arch-linux-32bit.fcm)
507if [ $compilo = g95 ] ; then
508sed -e s:"%COMPILER            pgf95":"%COMPILER            g95":1 \
509    -e s:"%LINK                pgf95":"%LINK                g95":1 \
510    -e s:"%PROD_FFLAGS         -fast":"%PROD_FFLAGS         $OPTIM":1 \
511    -e s:"%DEV_FFLAGS          -g -O1":"%DEV_FFLAGS          -g -O1 -Wall":1 \
512    -e s:"%DEBUG_FFLAGS        -g -O0 -Kieee -Ktrap=fp -Mbounds":"%DEBUG_FFLAGS        -g -O0 -Wall -ftrace=full -fbounds-check -freal=nan":1 \
513    -e s:"%BASE_FFLAGS         ":"%BASE_FFLAGS         $OPTPREC":1 \
514   arch-linux-32bit.fcm > arch-local.fcm
515   if [ $real = r8 ] ; then
516     sed -e s:"%FPP_DEF             ":"%FPP_DEF             NC_DOUBLE":1 \
517     arch-local.fcm > arch-local.fcm.new
518     mv -f arch-local.fcm.new arch-local.fcm
519   fi
520elif [ $compilo = gfortran ] ; then
521sed -e s:"%COMPILER            pgf95":"%COMPILER            gfortran":1 \
522    -e s:"%LINK                pgf95":"%LINK                gfortran":1 \
523    -e s:"%PROD_FFLAGS         -fast":"%PROD_FFLAGS         $OPTIM":1 \
524    -e s:"%DEV_FFLAGS          -g -O1":"%DEV_FFLAGS          -Wall -fbounds-check":1 \
525    -e s:"%DEBUG_FFLAGS        -g -O0 -Kieee -Ktrap=fp -Mbounds":"%DEBUG_FFLAGS        -g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all":1 \
526    -e s:"%BASE_FFLAGS         ":"%BASE_FFLAGS         $OPTPREC":1 \
527   arch-linux-32bit.fcm > arch-local.fcm
528   if [ $real = r8 ] ; then
529     sed -e s:"%FPP_DEF             ":"%FPP_DEF             NC_DOUBLE":1 \
530     arch-local.fcm > arch-local.fcm.new
531     mv -f arch-local.fcm.new arch-local.fcm
532   fi
533elif [ $compilo = pgf90 ] ; then
534sed -e s:"-Wl,-Bstatic -L/usr/lib/gcc-lib/i386-linux/2.95.2":" ":1 \
535    -e s:"%PROD_FFLAGS         -fast":"%PROD_FFLAGS         $OPTIM":1 \
536    -e s:"%BASE_FFLAGS         ":"%BASE_FFLAGS         $OPTPREC":1 \
537   arch-linux-32bit.fcm > arch-local.fcm
538   if [ $real = r8 ] ; then
539     sed -e s:"%FPP_DEF             ":"%FPP_DEF             NC_DOUBLE":1 \
540     arch-local.fcm > arch-local.fcm.new
541     mv -f arch-local.fcm.new arch-local.fcm
542   fi
543elif [ $compilo = ifort ] ; then
544sed -e s:"%COMPILER            pgf95":"%COMPILER            ifort":1 \
545    -e s:"%LINK                pgf95":"%LINK                ifort":1 \
546    -e s:"-Wl,-Bstatic -L/usr/lib/gcc-lib/i386-linux/2.95.2":" ":1 \
547    -e s:"%PROD_FFLAGS         -fast":"%PROD_FFLAGS         $OPTIM":1 \
548    -e s:"%BASE_FFLAGS         ":"%BASE_FFLAGS         $OPTPREC":1 \
549    -e s:"%DEV_FFLAGS          -g -O1":"%DEV_FFLAGS          -p -g -O2 -traceback -fp-stack-check -ftrapuv -check":1 \
550    -e s:"%DEBUG_FFLAGS        -g -O0 -Kieee -Ktrap=fp -Mbounds":"%DEBUG_FFLAGS        -g -no-ftz -traceback -ftrapuv -fp-stack-check -check":1 \
551   arch-linux-32bit.fcm > arch-local.fcm
552   if [ $real = r8 ] ; then
553     sed -e s:"%FPP_DEF             ":"%FPP_DEF             NC_DOUBLE":1 \
554     arch-local.fcm > arch-local.fcm.new
555     mv -f arch-local.fcm.new arch-local.fcm
556   fi
557else
558   echo Unexpected compiler $compilo ; exit
559fi # of if [ $compilo = g95 ] elif [ $compilo = pgf90 ]
560cd ..
561### Adapt "bld.cfg" (add the shell):
562whereisthatshell=$(which ${use_shell})
563echo "bld::tool::SHELL   $whereisthatshell" >> bld.cfg
564
565fi # of if [ "$pclinux" = 1 ]
566
567
568cd $MODEL/modipsl/modeles/LMDZ?
569
570### Modify makelmdz_fcm and makelmdz to use ORCHIDEE in the bench:
571### remove liborglob.a and libparallel.a
572cp makelmdz_fcm makelmdz_fcm.orig
573sed -e "s/-l\${LIBPREFIX}parallel//g" \
574sed -e "s/-l\${LIBPREFIX}orglob//g" \
575    makelmdz_fcm.orig > makelmdz_fcm
576cp makelmdz makelmdz.orig
577sed -e "s/-l\${LIBPREFIX}parallel//g" \
578sed -e "s/-l\${LIBPREFIX}orglob//g" \
579    makelmdz.orig > makelmdz
580
581
582##################################################################
583# Compile LMDZ
584##################################################################
585ok_veget=false
586if [ "$veget" = 1 ] ; then $ok_veget = true ; fi
587if [ $compile_with_fcm = 1 ] ; then makelmdz=makelmdz_fcm ; else makelmdz=makelmdz ; fi
588if [ "$pclinux" = 1 ] ; then
589        ./$makelmdz -d ${grid_resolution} -arch local -v $ok_veget gcm
590else
591   # we are on Ada
592    ./$makelmdz -d ${grid_resolution} -arch X64_ADA -v $ok_veget gcm
593fi
594
595if [ -f gcm.e ] || [ -f bin/gcm_${grid_resolution}_phylmd_seq_orch.e ] || [ -f bin/gcm_${grid_resolution}_phylmd_seq.e ] ; then
596echo '##########################################################'
597echo 'Compilation successfull !! '
598echo '##########################################################'
599else
600echo 'Compilation failed !!'
601exit
602fi
603
604##################################################################
605# Below, we run a benchmark test (if bench=0)
606##################################################################
607if [ $bench = 0 ] ; then
608                exit
609fi
610
611echo '##########################################################'
612echo ' Running a test run '
613echo '##########################################################'
614
615\rm -r BENCH${grid_resolution}
616bench=bench_lmdz_${grid_resolution}
617wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/$bench.tar.gz
618gunzip $bench.tar.gz
619tar xvf $bench.tar
620
621if [ -f gcm.e ] ; then 
622    cp gcm.e BENCH${grid_resolution}/
623elif [ -f bin/gcm_${grid_resolution}_phylmd_seq_orch.e ] ; then
624    cp bin/gcm_${grid_resolution}_phylmd_seq_orch.e  BENCH${grid_resolution}/gcm.e
625elif [ -f bin/gcm_${grid_resolution}_phylmd_seq.e ] ; then
626    cp bin/gcm_${grid_resolution}_phylmd_seq.e  BENCH${grid_resolution}/gcm.e
627else
628    echo "No gcm.e found"
629    exit
630fi
631
632cd BENCH${grid_resolution}
633./bench.sh > bench.out  2>&1
634
635echo '##########################################################'
636echo ' Bench results '
637echo '##########################################################'
638
639cat ./bench.out
640
641echo '##########################################################'
642echo 'Simulation finished in' `pwd`
643echo 'You may re-run it with : cd ' `pwd` ' ; gcm.e'
644echo 'or ./bench.sh'
645echo '##########################################################'
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