Changeset 4079 for dynamico_lmdz/aquaplanet/CMIP5a/RUN_AQUAPLANET_DYNAMICO_LMDZ5/prepare.sh

Timestamp:

Oct 23, 2017, 5:53:34 PM (7 years ago)

Author:

dubos

Message:

aquaplanet : common output grid definitions for LMDZ and DYNAMICO + CE0L in server mode + output flux diagnostics monthly

File:

• dynamico_lmdz/aquaplanet/CMIP5a/RUN_AQUAPLANET_DYNAMICO_LMDZ5/prepare.sh (modified) (6 diffs)

dynamico_lmdz/aquaplanet/CMIP5a/RUN_AQUAPLANET_DYNAMICO_LMDZ5/prepare.sh

@@ -66 +66 @@
 
 function sed_ce0l() {
-    def USING_SERVER false
+    def USING_SERVER true
     def CE0L yes
     def READ_START no
@@ -102 +102 @@
 cd ${MYDIR}
 rm -rf gcm.log *.nc xios_*.err xios_*.out gcm.log logs
-ln -s ../FILES_LMDZ/*.nc .
+
+symlink() { if [ -e \$1 ] ; then ln -s \$1 \$2 ; fi ; }
+
+for x in ../FILES_LMDZ/*.nc ; do ln -s \$x . ; done
 
 cat <<END  > killme.sh
@@ -116 +119 @@
 }
 
+function prologue_ce0l() {
+echo
+}
+
 function prologue_first() {
 cat <<EOF 
-ln -s store0/limit.nc store0/climoz_LMDZ.nc store0/startphy.nc .
+symlink store0/limit.nc .
+symlink store0/climoz_LMDZ.nc .
+symlink store0/startphy.nc .
 EOF
 }
@@ -124 +133 @@
 function prologue_next() {
 cat <<EOF 
-ln -s store0/limit.nc store0/climoz_LMDZ.nc .
-ln -s store_prev/restartphy.nc startphy.nc
-ln -s store_prev/restart.nc start.nc
+symlink store0/limit.nc .
+symlink store0/climoz_LMDZ.nc .
+symlink store_prev/restartphy.nc startphy.nc
+symlink store_prev/restart.nc start.nc
 EOF
 }
@@ -166 +176 @@
 
 function batch_X64_CURIE_ce0l() {
-cat <<EOF
-#!/bin/bash
-## Request name
-#MSUB -r ${EXPERIMENT}_ce0l_mpi
-#MSUB -q standard 
-#MSUB -A gen7548
-#MSUB -x
-## Number of tasks (=MPI processes) to use
-#MSUB -n $NB_MPI_CE0L
-## Elapsed time limit in seconds
-#MSUB -T 600
-## Quality of Service required (long [3 days], normal [1 day], test [30 min])
-#MSUB -Q normal
-
-$( prologue_all )
-date > gcm.log
-export OMP_NUM_THREADS=1
-ccc_mprun $ICOSA_LMDZ >> gcm.log
-date >> gcm.log
-$( epilogue_ce0l )
-$( epilogue_all )
-EOF
+batch_X64_CURIE ce0l $WALLTIME_CE0L
 }
 
 function batch_X64_CURIE_first() {
-batch_X64_CURIE first
+batch_X64_CURIE first $WALLTIME_JOB
 }
 
 function batch_X64_CURIE_next() {
-batch_X64_CURIE next
-}
-
-function batch_X64_CURIE() { # $1 = first or next
+batch_X64_CURIE next $WALLTIME_JOB
+}
+
+function batch_X64_CURIE() { # $1 = first or next $2 = walltime
 NB_MPI_TOTAL=$(( $NB_MPI_DYNAMICO + $NB_MPI_XIOS ))
 cat <<EOF
@@ -210 +199 @@
 #MSUB -n $NB_MPI_TOTAL
 ## Elapsed time limit in seconds
-#MSUB -T $JOB_WALLTIME
+#MSUB -T $2
 ## Quality of Service required (long [3 days], normal [1 day], test [30 min])
 #MSUB -Q normal