Changeset 3735 for BOL/script_install/install_lmdz.sh

Timestamp:

Jun 25, 2020, 11:15:04 AM (4 years ago)

Author:

idelkadi

Message:

Updating install_lmdz.sh in order to run with Cospv2
Cospv2 only runs with XIOS.
To run with Cospv2 :
./install_lmdz.sh -parallel mpi_omp -xios -cospv2

File:

• BOL/script_install/install_lmdz.sh (modified) (9 diffs)

BOL/script_install/install_lmdz.sh

@@ -112 +112 @@
 cosp=0 ; opt_cosp1=""
 cosp=0 ; opt_cosp2=""
+cosp=0 ; opt_cospv2=""
 opt_cosp=""
 
@@ -168 +169 @@
     -cosp      to compile with cosp(v1)
  
-    -cosp2      to compile with cosp(v2)
+    -cosp2      to compile with cosp(1v2)
+
+    -cospv2      to compile with cosp(v2)
 
     -nofcm     to compile without fcm
@@ -197 +200 @@
      "-cosp") cosp=1 ; opt_cosp1="-cosp true" ; shift ;;
      "-cosp2") cosp2=1 ; opt_cosp2="-cosp2 true" ; shift ;;
+     "-cospv2") cospv2=1 ; opt_cospv2="-cospv2 true" ; shift ;;
      "-orchidee_rev") orchidee_rev=$2 ; shift ; shift ;;
      "-nofcm") compile_with_fcm=0 ; shift ;;
@@ -366 +370 @@
    opt_cosp="$opt_cosp2"
 fi
+if [ "$cospv2" = 1 ] ; then
+   opt_cosp="$opt_cospv2"
+fi
 
 ## if also compiling XIOS, cosp must be activate to define axis in *.xml
 if [ "$with_xios" = "y" ] ; then
-  if [ ! "$cosp" = 1 -o "$cosp2" = 1 ] ; then
+  if [ "$cosp" = 0 -a  "$cosp2" = 0 -a "$cospv2" = 0 ] ; then
    echo "Error, you must use -cosp option when compiling with -xios"
    echo "You need to call Cosp in physical first step to define axis variables"
@@ -375 +382 @@
   fi
   opt_makelmdz_xios="-io xios"
+fi
+
+if [ "$cospv2" = 1 -a "$with_xios" = "n" ] ; then
+  echo "Error, Cospv2 cannot run without Xios"
+  exit
 fi
 
@@ -1037 +1049 @@
 tar xvf $bench.tar.gz
 
-if [ "$cosp" = 1 -o "$cosp2" = 1 ] ; then
+if [ "$cosp" = 1 -o "$cosp2" = 1 -o "$cospv2" = 1 ] ; then
   cd BENCH${grid_resolution}
 # copier les fichiers namelist input et output our COSP
-  cp ../DefLists/cosp_input_nl.txt .
-  cp ../DefLists/cosp_output_nl.txt .
+  cp ../DefLists/cosp*_input_nl.txt .
+  cp ../DefLists/cosp*_output_nl.txt .
 # Activer la cles ok_cosp pour tourner avec COSP
   sed -e 's@ok_cosp=n@ok_cosp=y@' config.def > tmp
@@ -1089 +1101 @@
 
   #activer les sorties pour Cosp
-  if [ "$cosp" = 1 ] ; then 
+  if [ "$cosp" = 1 -o "$cosp2" = 1 ] ; then 
    histfile=file_def_histdayCOSP_lmdz.xml
    sed -e 's@enabled=".FALSE."@enabled=".TRUE."@' $histfile > tmp ; \mv -f tmp $histfile
@@ -1095 +1107 @@
    sed -e 's@compression_level="2"@compression_level="0"@' $histfile > tmp ; \mv -f tmp $histfile
   fi
+  if [ "$cospv2" = 1 ] ; then
+   histfile=file_def_histdayCOSPv2_lmdz.xml
+   sed -e 's@compression_level="2"@compression_level="0"@' $histfile > tmp ; \mv -f tmp $histfile
+   contextfile=context_lmdz.xml
+   sed -e 's@src="./file_def_histdayCOSP_lmdz.xml"@src="./file_def_histdayCOSPv2_lmdz.xml"@' $contextfile > tmp ; \mv -f tmp $contextfile
+   fieldfile=field_def_lmdz.xml
+   sed -e 's@field_def_cosp1.xml@field_def_cospv2.xml@' $fieldfile > tmp ; \mv -f tmp $fieldfile
+  fi
+
   cd ..
 fi
@@ -1116 +1137 @@
      echo "export OMP_NUM_THREADS=2" >> bench.sh
    fi
-   echo "ulimit -s unlimited" >> bench.sh
+   if [ "$cospv2" = 1 -o "$cosp" = 1 -o "$cosp2" = 1 ] ; then 
+      echo "ulimit -s 200000" >> bench.sh
+   else
+      echo "ulimit -s unlimited" >> bench.sh
+   fi
    if [ ${hostname:0:5} = jean- ] ; then
      echo "srun -n 2 -A $idris_acct@cpu gcm.e > listing  2>&1" >> bench.sh