Changeset 3573 for BOL/script_install/install_lmdz.sh

Timestamp:

Oct 4, 2019, 4:01:59 PM (5 years ago)

Author:

Laurent Fairhead

Message:

Inclusion of jean-zay, the new idris machine
LF

File:

• BOL/script_install/install_lmdz.sh (modified) (11 diffs)

BOL/script_install/install_lmdz.sh

@@ -89 +89 @@
 ## parallel can take the values none/mpi/omp/mpi_omp
 parallel=mpi_omp
+idris_acct=lmd
 parallel=none
 OPT_GPROF=""
@@ -218 +219 @@
             module load intel/2017.2 ;
             arch=X64_ADA ;;
+
+   jean-)   compiler="mpiifort" ;
+            par_comp="mpiifort" ;
+            o_ins_make="-t jeanzay" ;
+            make=gmake ;
+            module load intel-compilers/19.0.4 ;
+            module load intel-mpi/19.0.4 ;
+            module load hdf5/1.10.5/intel-19.0.4-mpi ;
+            module load netcdf/4.7.0/intel-19.0.4-mpi ;
+            module load netcdf-fortran/4.4.5/intel-19.0.4-mpi ;
+            module load subversion/1.9.7/gcc-4.8.5 ;
+            module load intel-mkl/19.0.4 ;
+            export NETCDF_LIBDIR=./
+            export NETCDFFORTRAN_INCDIR=./
+            export NETCDFFORTRAN_LIBDIR=./
+            arch=X64_JEANZAY ;;
 
    cicla|camel)   compiler="gfortran" ;
@@ -412 +429 @@
    compile_with_fcm=1
 
+elif [ $compiler = mpiifort ] ; then
+   compile_with_fcm=1
+
 else
    echo unexpected compiler $compiler ; exit
@@ -433 +453 @@
   if [ $real = r8 ] ; then OPTPREC="$OPTPREC -real-size 64 -DNC_DOUBLE" ; fi
   OPTIM="-O2 -fp-model strict -ip -axAVX,SSE4.2 -align all "
+  OPTIMGCM="$OPTIM $OPTPREC"
+fi
+if [ ${hostname:0:5} = jean- ] ; then
+  netcdf=0 # no need to recompile netcdf, alreday available
+  check_linux=0
+  pclinux=0
+  ioipsl=0 # no need to recompile ioipsl, already available
+  #netcdf="/smplocal/pub/NetCDF/4.1.3"
+  compiler="mpiifort"
+  fmod='module '
+  if [ $real = r8 ] ; then OPTPREC="$OPTPREC -i4 -r8 -DNC_DOUBLE" ; fi
+  OPTIM="-auto -align all -O2 -fp-model strict -xHost "
   OPTIMGCM="$OPTIM $OPTPREC"
 fi
@@ -598 +630 @@
     if [ "`grep ada AA_make.gdef`" = "" ] ; then # Bidouille pour compiler sur ada des vieux modipsl.tar
         \cp -f ~rdzt401/bin/AA_make.gdef .
+    fi
+    if [ "`grep jeanzay AA_make.gdef`" = "" ] ; then # Bidouille pour compiler sur ada des vieux modipsl.tar
+        echo 'Warning jean-zay not in AA_make.gdef'
+        echo 'Think about updating'
+        exit 1
     fi
     
@@ -665 +702 @@
     ln -s ~rpsl035/IOIPSL_PLUS/modipsl_Tagv2_2_3/bin/* bin/
     ln -s ~rpsl035/IOIPSL_PLUS/modipsl_Tagv2_2_3/lib/* lib/
-
-  fi # of if [ ${hostname:0:5} = ada33 ]
+  elif [ ${hostname:0:5} = jean- ] ; then
+     cd $MODEL/modipsl
+     cd util
+       if [ "`grep jeanzay AA_make.gdef`" = "" ] ; then # Bidouille pour compiler sur ada des vieux modipsl.tar
+        echo 'Warning jean-zay not in AA_make.gdef'
+        echo 'Think about updating'
+        exit 1
+       fi
+       ./ins_make $o_ins_make
+# Compile IOIPSL on jean-zay
+       cd $MODEL/modipsl/modeles/IOIPSL/src
+       gmake
+   
+  fi # of if  [${hostname:0:5} = ada33 ]
   echo install.sh ioipsl_OK `date`
 fi # of if [ $ioipsl = 1 ]
@@ -690 +739 @@
     -MPI /smplocal/intel/compilers_and_libraries_2017.2.174/linux/mpi/intel64/ \
     -arch X64_ADA > xios.log 2>&1
+   elif [ ${hostname:0:5} = jean- ] ; then
+    echo 'Need to work on install_xios implementation for jean-zay'
+    exit
    else
      ./install_xios.bash -prefix $MODEL/modipsl/modeles \
@@ -921 +973 @@
   echo resol=${grid_resolution} >> compile.sh
   echo ./$makelmdz $OPT_MAKELMDZ -rrtm true $opt_cosp $opt_makelmdz_xios -d \$resol -v $veget_version -mem -parallel $parallel gcm >> compile.sh
+  echo ./$makelmdz $OPT_MAKELMDZ -rrtm true $opt_cosp $opt_makelmdz_xios -d \$resol -v $veget_version -mem -parallel $parallel gcm 
   chmod +x ./compile.sh
   if [ $bench != 0 ] ; then ./compile.sh > $lmdzlog 2>&1 ; fi
@@ -947 +1000 @@
 
 if [ "$gcm" = "" ] ; then
-   echo 'Compilation failed !!'
-   # Ehouarn : temporary, do not exit and let job finish (to set up bench case)
-   #exit
-   set +e
+  if [ $bench != 0 ] ; then
+    echo 'Compilation failed !! Cannot run the benchmark;'
+    exit
+  else
+    echo 'Compilation not done (only done when bench=1)'
+  fi
 else
    echo '##########################################################'
@@ -1034 +1089 @@
    fi
    echo "ulimit -s unlimited" >> bench.sh
-   echo "$mpirun -np 2 gcm.e > listing  2>&1" >> bench.sh
+   if [ ${hostname:0:5} = jean- ] ; then
+     echo "srun -n 2 -A $idris_acct@cpu gcm.e > listing  2>&1" >> bench.sh
+   else
+     echo "$mpirun -np 2 gcm.e > listing  2>&1" >> bench.sh
+   fi
 else
    echo "./gcm.e > listing  2>&1" > bench.sh
@@ -1055 +1114 @@
   echo 'You may re-run it with : '
   echo 'cd ' `pwd` '; ./bench.sh'
-  echo 'ulimit -s unlimited'
-  echo 'export OMP_NUM_THREADS=2'
-  echo 'export OMP_STACKSIZE=800M'
-  echo "$mpirun -np 2 gcm.e "
+#  echo 'ulimit -s unlimited'
+#  echo 'export OMP_NUM_THREADS=2'
+#  echo 'export OMP_STACKSIZE=800M'
+#  echo "$mpirun -np 2 gcm.e "
 fi
 echo '##########################################################'