####
#### A. Spiga -- 2010 -- 
####


#
## WRF modeling system software Version 3.0.1.1 (August 22, 2008)
#

wget http://www.mmm.ucar.edu/wrf/src/WRFV3.0.1.1.TAR.gz .
tar xzvf WRFV3.0.1.1.TAR.gz
\rm WRFV3.0.1.1.TAR.gz
mv WRFV3/* .
rmdir WRFV3

#
## Replacing Mars files
#

#tar xzvf LMD_LES_MARS_patches.tar.gz 
#mv LMD_LES_MARS_patches LMD_LES_MARS/modif_mars
#cd LMD_LES_MARS
#ln -sf ../LMD_LES_MARS_patches modif_mars

cd modif_mars
ln -sf ../../LMD_MM_MARS/SRC/WRFV2/phys/module_lmd_driver.F
cd ..

cd dyn_em
ln -sf ../modif_mars/module_big_step_utilities_em.F .
ln -sf ../modif_mars/module_first_rk_step_part1.F . 
ln -sf ../modif_mars/module_first_rk_step_part2.F .
ln -sf ../modif_mars/module_initialize_les.F .
ln -sf ../modif_mars/solve_em.F .
ln -sf ../modif_mars/module_em.F .
ln -sf ../modif_mars/module_diffusion_em.F .
ln -sf ../modif_mars/Makefile_dyn_em Makefile
cd ..

cd frame
ln -sf ../modif_mars/module_driver_constants.F .
cd ..

cd Registry
ln -sf ../modif_mars/Registry.EM .
#ln -sf ../modif_mars/Registry.bash .
cd ..

cd phys
ln -sf ../modif_mars/Makefile .
ln -sf ../modif_mars/module_lmd_driver.F .
ln -sf ../modif_mars/module_physics_addtendc.F .
ln -sf ../modif_mars/module_physics_init.F .
cd ..

cd share
ln -sf ../modif_mars/module_model_constants.F .
cd ..


ln -sf modif_mars/makeles .


### create a fake directory
mkdir -p mars_lmd/libf/phymars