#! /bin/bash ################################## # makemeso allows you to compile # # WRF with modified LMD physics # ################################## ############################## # Author: A. Spiga # # New version : October 2008 # # Last update : January 2009 # # November 09 # # January 11 # ############################## ############################### #### Type makemeso -h for help ############################### ###path to compiled version of ioipsl on your system for generic physics pathioipsl='/home/leconte/script/ioipsl/modipsl/lib' ############################################################################################## ############################################################################################## ############################################################################################## ############################################################################################## donotcompile=0 donotallow=0 config='real' donotcompilephys=0 justphys=0 debug=0 fresh_start=0 phys="mars_lmd" scenario="" from_scratch=0 while getopts "drc:njhgp:fs:xe" options; do case $options in d ) donotcompile=1;donotcompilephys=1;justphys=1;; ## just to check the compile folder r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last') c ) config="${OPTARG}";; ## idealized cases n ) donotcompilephys=1;; ## do not recompile physics j ) justphys=1;; ## just compile LMD physics g ) debug=1;; ## debug mode p ) phys="${OPTARG}";; ## choose physics f ) fresh_start=1;; ## a fresh start e ) from_scratch=1;; ## a fresh start with a completely new folder s ) scenario="${OPTARG}";; ## a specific scenario (with precompiling flags) x ) donotcompile=1;phys="void_lmd_new";donotcompilephys=1;; ## a case with no LMD physics included h ) echo " # Use: # # makemeso ## basic use (real-case configuration) # # makemeso -d ## no compilation, just check the name of the compile folder # # makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...) # makemeso -c les ## large-eddy simulations mode based on WRFV3 # # makemeso -n ## do not recompile LMD physics (must have been compiled before) # # makemeso < last ## basic use + skip questions [! script must have been executed at least once] # makemeso -r < last ## basic use + skip questions + only known config # makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile # # makemeso -j ## just compile the LMD physics # # makemeso -g ## debug mode # # makemeso -h ## display options # # makemeso -p mars_lmd_new ## choose physics # venus_lmd_new # generic_lmd_new # titan_lmd_new # # makemeso -f ## fresh start [clean -a] # # makemeso -e ## a completely new recompile with erasing the WHOLE compiling folder # # makemeso -s DUSTSTORM ## a specific scenario (with precompiling flags) # # makemeso -x ## a case with no LMD physics included " ; exit ;; esac done #-------------- # talk w/ user #-------------- echo '****************************************' echo ' LMD Mesoscale Model Compiler. Welcome.' echo '****************************************' if [[ "${phys}" == *"new"* ]] then echo '*********** PHYSICS: ' ${phys} echo '****************************************' fi # computer uname -a | grep x86_64 > /dev/null if [[ "$?" == 0 ]] then machine='64' else machine='32' fi # compiler echo "Supported compiler options are " echo " <1> pgf90" echo " <2> g95" echo " <3> pgf90 + mpi" echo " <4> ifort" echo " <5> ifort + mpi" echo " <7> xlf + mpi (IBM AIX)" echo " <8> gfortran" echo " <9> gfortran + openmpi" echo "Your choice ?" ; read reply case ${reply} in 1) compilo='pgf' ; numproc=1 ;; 2) compilo='g95' ; numproc=1 ;; 3) compilo='mpi' if [[ "${WHERE_MPI}" = "" ]] then echo Please initialize the variable WHERE_MPI in your environnement exit fi ;; 4) compilo='ifort' ; numproc=1 ;; 5) compilo='mpifort' ;; 7) compilo='mpixlf' ;; 8) compilo='gnu' ; numproc=1 ;; 9) compilo='openmpi';; *) echo not supported by this script ; exit ;; esac # number of processors if [[ "${phys}" == *"new"* ]] then numproc=999 else case ${reply} in 3) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;; 5) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;; 7) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;; esac fi # dimensions if [ ${donotcompile} -eq 0 ] then # ngrid: now dynamically set in newphys 03/2014 if [[ "${phys}" == *"new"* ]] then lon=999 lat=999 level=999 else echo Grid points in longitude ? ; read lon echo Grid points in latitude ? ; read lat echo Number of vertical levels ? ; read level fi fi echo Number of domains ? ; read dom ###PB lecture dom si < last case ${dom} in 1) single='_single' ;; *) single='_nest' ;; esac if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ] then single='' fi testflag='' #### #testflag='_test' #### conf_wrf="${phys}_${config}${scenario}_${compilo}_${machine}${single}${testflag}" if [ ${debug} -eq 1 ] then conf_wrf="debug_${conf_wrf}" fi \rm what_folder 2> /dev/null echo ${conf_wrf} > what_folder if [ ${donotcompile} -eq 0 ] then ##\rm what_folder 2> /dev/null ##echo '**********************' ##echo '*** Your folder is ...' ##echo '**********************' ##echo ${conf_wrf} | tee what_folder ##cat what_folder ##echo ${conf_wrf} > what_folder ##echo ${reply} > what_compilo ##echo ${numproc} > what_numproc #if [[ "${phys}" != "nophys_" ]] #then # exit #fi #else # tracers: now dynamically set in newphys 09/2013 if [[ "${phys}" == *"new"* ]] then tra=999 else echo Number of tracers ? ; read tra if [ ${tra} -eq 0 ] then tra=1 fi fi fi # 'from scratch' case if [ ${from_scratch} -eq 1 ] then echo "***** I ERASE THE FOLDER "${conf_wrf} \rm -rf ${conf_wrf} fi # folder mkdir ${conf_wrf} 2> /dev/null if [[ "$?" == 0 ]] then echo new folder ... link sources ############################################### echo ${phys} ./SRC/SCRIPTS/copy_model -p ${phys} -c ${config} mv zeWRFV2 ${conf_wrf}/WRFV2 ############################################### if [[ "${phys}" == *"new"* ]] then cd ${conf_wrf}/WRFV2 if [[ "${config}" != "les" ]] then cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM else cp -L ../../SRC/LES/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM fi cd phys ln -sf module_lmd_driver.F.new module_lmd_driver.F cd .. else cd ${conf_wrf}/WRFV2 cd Registry ; ./Registry.bash ; cd .. fi #### sparadrap consequent a l'utilisation de copy_model pour les liens #### -- car alors il manque fftpack if [[ "${config}" == "les" ]] then cp ../../SRC/LES/correcfft ./ ./correcfft \rm correcfft fi else cd ${conf_wrf}/WRFV2 if [ ${fresh_start} -eq 1 ] then echo '*** FRESH START, I clean everything' ### clean the whole place clean -a > /dev/null 2> /dev/null ### get a possibly modified registry ! if [[ "${phys}" == *"new"* ]] then cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM else cp ../../SRC/WRFV2/Registry/Registry.EM Registry/ fi if [[ "${config}" == "les" ]] then cp ../../SRC/LES/WRFV2/Registry/Registry.EM Registry/ fi ### ensure the model will be recompiled from scratch with correct registry cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. # answer='y' ## a voir... pas si sur # else # if [[ "${phys}" != "nophys_" ]] # then # echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer # case ${answer} in # y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;; # *) answer='no' ;; # esac # fi fi fi # summary echo '**********************' echo '*** Your folder is ...' echo '**********************' echo ${conf_wrf} echo '**********************' echo '****************************************' echo so ... echo your computer is ${machine} bits echo ${compilo} is your compiler if [[ "${compilo}" = "mpi" ]] then echo MPICH is in ${WHERE_MPI} fi echo you have ${dom} domains if [[ "${phys}" == *"new"* ]] then echo number of processors can be changed without recompiling echo x points can be changed without recompiling echo y points can be changed without recompiling echo z points can be changed without recompiling echo number of tracers can be changed without recompiling else echo you will use ${numproc} processors echo you have ${lon} x points echo ' '${lat} y points echo ' '${level} z points echo ' '${tra} tracers fi echo '****************************************' # save answer \rm last 2> /dev/null touch last echo ${reply} >> last if [[ "${phys}" != *"new"* ]] then if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ] then echo ${numproc} >> last fi echo ${lon} >> last echo ${lat} >> last echo ${level} >> last fi echo ${dom} >> last if [[ "${phys}" != **"new"* ]] then echo ${tra} >> last fi #------------ # log files #------------ \rm log_compile 2> /dev/null \rm log_error 2> /dev/null #----------------- # configure WRF #----------------- mv configure.wrf configure.wrf.bak 2> /dev/null ######################## conf_wrf_forall="${compilo}_${machine}${single}${testflag}" #### in this case options are different because for LES, WRFV3 is used if [[ "${config}" == "les" ]] then conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}" fi case ${conf_wrf_forall} in #######LES-specific (WRFV3-based) -- previously in 'makeles' ####### lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP] \rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf \rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null sed s+"-lnetcdf"+"-lnetcdf -L../$phys/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]] then echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS." #sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf #sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf else #sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf #sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf #### OPENMPI sed s+"mpif90 -f90=\$(SFC)"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"mpicc -cc=\$(SCC)"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf fi sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pas forcement necessaire ici mais OK sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf \rm conf > /dev/null ;; lesmpifort_64) ## MPI (dm) 64 bits IFORT \rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf \rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null if [[ "${phys}" != *"void"* ]] then sed s+"-lnetcdff"+"TOZTOZ"+g configure.wrf > yeah ; mv -f yeah configure.wrf # ... in case there is netcdff save it in TOZTOZ so that it is not impacted in the following sed sed s+"-lnetcdf"+"-lnetcdf -L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"TOZTOZ"+"-lnetcdff"+g configure.wrf > yeah ; mv -f yeah configure.wrf else sed s+"-lnetcdf"+"-lnetcdf $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf fi sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"O3"+"O3 -mcmodel=large -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf #sed s+"-lnetcdf -lnetcdff"+"-lnetcdf -lnetcdff -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf if [ ${debug} -ne 0 ] # not working for xlf! then echo 'DEBUG DEBUG DEBUG DEBUG' sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah mv -f yeah configure.wrf fi \rm conf > /dev/null ;; lesopenmpi_64_single) echo Special option... \rm conf > /dev/null 2> /dev/null ; touch conf ; echo 13 >> conf ; echo 0 >> conf configure < conf > log_compile 2> log_error sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"-lnetcdff"+'-lnetcdff -I$(WRF_SRC_ROOT_DIR)/inc'+g configure.wrf > yeah ; mv -f yeah configure.wrf ;; lesgnu_64_single) echo Special option... \rm conf > /dev/null 2> /dev/null ; touch conf ; echo 11 >> conf ; echo 0 >> conf configure < conf > log_compile 2> log_error sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"-lnetcdff"+'-lnetcdff -I$(WRF_SRC_ROOT_DIR)/inc'+g configure.wrf > yeah ; mv -f yeah configure.wrf ;; ####### #######LES-specific (WRFV3-based) -- previously in 'makeles' # GFORTRAN, 64 bits, no nesting gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd .. echo 15 | configure > log_compile 2> log_error sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"-L../$phys/libo -llmd"+"-lnetcdf -lnetcdff -L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;; # PGF90, 32 bits, no nesting pgf_32_single) echo 1 | configure > log_compile 2> log_error sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;; # PGF90, 32 bits, nesting pgf_32_nest) echo 2 | configure > log_compile 2> log_error sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;; # PGF90, 64 bits, no nesting pgf_64_single) echo 1 | configure > log_compile 2> log_error #### the following line is necessary because readtesassim has a line "use netcdf" in it! #sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;; # PGF90, 64 bits, nesting pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd .. echo 4 | configure > log_compile 2> log_error sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;; # G95, 32 bits, no nesting g95_32_single) echo 13 | configure > log_compile 2> log_error sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;; # G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd .. echo 14 | configure > log_compile 2> log_error ##### marche pas .... #sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf #sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf #sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;; sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;; #sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;; # IFORT, 64 bits, no nesting ifort_64_single) echo 5 | configure > log_compile 2> log_error sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf if [ ${debug} -ne 0 ] # not working for xlf! then echo 'DEBUG DEBUG DEBUG DEBUG' sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah mv -f yeah configure.wrf fi ## !!! NETCDF must be defined sed s+"lio_grib_share"+"lio_grib_share -L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah mv -f yeah configure.wrf ;; mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting echo 9 | ./configure > log_compile 2> log_error sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"-O1"+"-O1 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"-O2"+"-O2 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"-O3"+"-O3 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf if [ ${debug} -ne 0 ] # not working for xlf! then echo 'DEBUG DEBUG DEBUG DEBUG' sed s+"#-g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah mv -f yeah configure.wrf fi sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf #sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide #-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3 #http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/ #### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf ### necessary even if mpi-selector is used (no need in makegcm though) sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf | sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf ## !!! NETCDF must be defined if [[ "${phys}" != *"void"* ]] then sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah else sed s+"-lesmf_time"+"-lesmf_time $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah fi mv -f yeah configure.wrf #### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver] sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah mv -f yeah configure.wrf ;; # MPICH, 64 bits, no nesting / nesting mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd .. echo 3 | configure > log_compile 2> log_error sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ### the following line is necessary because readtesassim has a line "use netcdf" in it! sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf | sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g | sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah #sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf | sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g | sed s+"mpicc"+"mpicc -DMPI2_SUPPORT -w -O3"+g > yeah #| sed s+"fastsse"+"fast"+g > yeah mv -f yeah configure.wrf ;; # #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah # ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem # ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem #sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah #sed s+"-fastsse"+""+g configure.wrf > yeah #sed s+"-fastsse"+"-fast"+g configure.wrf > yeah #sed s+"-fastsse"+"-Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8 -Mfprelaxed"+g configure.wrf > yeah #mv -f yeah configure.wrf ;; # MPICH, 64 bits, OK with periodic BC but no positive definite mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd .. echo 2 | configure > log_compile 2> log_error sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf | sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g | sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah mv -f yeah configure.wrf ;; # XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd .. echo 3 | configure > log_compile 2> log_error sed -f physics.sed configure.wrf > yeah mv -f yeah configure.wrf ;; # ANYTHING ELSE *) echo NO PRESETS ... if [ ${donotallow} -eq 0 ] then configure else # problem when an input file is used echo 'please cd to '$PWD' and type ./configure' exit fi ;; esac ######################## ### here a case structure would be great if [[ "${phys}" == *"new"* ]] then if [[ "${config}" == "les" ]] ### LES is different because of WRFV3 then sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah else sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah fi mv -f yeah configure.wrf fi ### SCENARIO SCENARIO SCENARIO if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment? then # precompiling flag in WRF part sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah mv -f yeah configure.wrf # precompiling flag in LMD part cd $phys cp -Lrf makegcm_${compilo} yeah \rm makegcm_${compilo} sed s+"-DMESOSCALE"+"-D${scenario} -DMESOSCALE"+ yeah > makegcm_${compilo} chmod 755 makegcm_${compilo} \rm yeah cd .. fi ################ #if [[ "${phys}" == "nophys_" ]] #then # if [[ "${config}" == "les" ]] ### LES is different because of WRFV3 # then # sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf # sed s+"-L../$phys/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf # else # ### not tested yet but should be working # echo CAUTION CAUTION CAUTION NOT FULLY TESTED # sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf # sed s+"-L../$phys/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf # fi #fi ################ if [[ "${phys}" == *"venus"* ]] then sed s+"LIB_BUNDLED = "+"LIB_BUNDLED = /usr/lib64/liblapack.so \ "+g configure.wrf > yeah ; mv -f yeah configure.wrf fi if [ ${debug} -ne 0 ] # not working for xlf! then echo 'DEBUG DEBUG DEBUG DEBUG' sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah #sed s+"# -g"+"-g -Ktrap=fp -Mbounds"+g configure.wrf > yeah #sed s+"# -g"+"-g"+g configure.wrf > yeah mv -f yeah configure.wrf fi if [[ "${phys}" == *"prescribed"* ]] then donotcompilephys=1 fi # some compiler and environment mess things up when using -C sed s+"-C"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf #exit ################################################## # compile physics ################################################## if [ ${donotcompilephys} -eq 0 ] #|| [[ "${phys}" != *"prescribed"* ]] then cd $phys/ if [[ "${phys}" == *"new"* ]] then divx=1 divy=1 else # required size #---------------- case ${numproc} in 1) divx=1 ; divy=1 ;; 2) divx=1 ; divy=2 ;; 4) divx=2 ; divy=2 ;; 6) divx=2 ; divy=3 ;; 8) divx=2 ; divy=4 ;; 12) divx=3 ; divy=4 ;; 16) divx=4 ; divy=4 ;; 20) divx=4 ; divy=5 ;; 24) divx=4 ; divy=6 ;; 32) divx=4 ; divy=8 ;; 64) divx=8 ; divy=8 ;; 128) divx=8 ; divy=16 ;; *) echo not yet supported ; exit ;; esac fi physx=$(expr ${lon} - 1) restex=$(expr ${physx} \% ${divx}) physy=$(expr ${lat} - 1) restey=$(expr ${physy} \% ${divy}) if [[ ${restex} != 0 || ${restey} != 0 ]] then echo nx-1 shall be divided by ${divx} echo ny-1 shall be divided by ${divy} exit fi physx=$(expr ${physx} \/ ${divx}) physy=$(expr ${physy} \/ ${divy}) physz=$(expr ${level} - 1) # change this if you change num_soil_layers in WRF # -- default is 10 if [[ "${phys}" == *"new"* ]] then soilsize=18 ## nouvelle physique. ne sert a rien ici. voir comsoil. else soilsize=10 fi # GCM environment variables #-------------------------- export LMDGCM=$PWD export LIBOGCM=$PWD/libo # generate the appropriate dimphys #--------------------------------- if [[ "${phys}" == *"mars"* ]] then cd libf/phymars elif [[ "${phys}" == *"venus"* ]] then cd libf/phyvenus elif [[ "${phys}" == *"generic"* ]] then cd libf/phystd elif [[ "${phys}" == *"titan"* ]] then cd libf/phytitan fi \rm dimphys.h 2> /dev/null # if [[ "${phys}" == "newphys_" ]] # then # ln -sf ../../meso_dimphys.h_ref . ## ne sert plus !! # else if [[ "${phys}" == "mars_lmd" ]] then physize=$(expr ${physx} \* ${physy}) sed s/--xsize--/${physx}/g meso_dimphys.h_ref | sed s/--ysize--/${physy}/g | sed s/--physize--/${physize}/g | sed s/--zsize--/${physz}/g | sed s/--soilsize--/${soilsize}/g > dimphys.h head -15 dimphys.h fi #### TEST new new phys #if [[ "${phys}" == "newphys_" ]] #then # touch gr_fi_dyn.F.lien # ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger ################################ ################################ ################################ #fi #### #### cd ../.. # prepare for nesting #--------------------- cd libf duplicate${dom} 2> /dev/null cd .. # compile physics #-------------------------- \rm libf/grid/dimensions.h 2> /dev/null \rm -rf libo/* 2> /dev/null echo 1. compiling LMD physics ... echo compilation info in: echo $PWD/libo/log_compile_phys if [ ${debug} -ne 0 ] then if [[ "${phys}" == *"mars"* ]] then echo 'DEBUG DEBUG DEBUG DEBUG' nohup makegcm_${compilo} -debug -full -t ${tra} -p mars -d ${physz} testphys1d | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys nohup makegcm_${compilo} -debug -full -t ${tra} -p mars -d ${physz} testphys1d | tee libo/log_compile_phys2 | grep 'warnings' >> libo/log_compile_phys2 elif [[ "${phys}" == *"venus"* ]] then echo 'DEBUG DEBUG DEBUG DEBUG' nohup ./makelmdz -debug -full -p venus -d 51 rcm1d -arch linux-ifort -cpp MESOSCALE | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys # on /u/ and /planeto/ nohup ./makelmdz --debug p venus -d 51 rcm1d -arch linux-ifort -cpp MESOSCALE | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys elif [[ "${phys}" == *"generic"* ]] then echo 'DEBUG DEBUG DEBUG DEBUG' nohup ./makelmdz -debug -t ${tra} -p std -b 36x32 -s 1 -d 25 rcm1d -arch X64_MESU -cpp MESOSCALE | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys #Proxb elif [[ "${phys}" == *"titan"* ]] then echo 'DEBUG DEBUG DEBUG DEBUG' nohup makelmdz -debug -full -t ${tra} -p titan -b 23x23 -d 25 rcm1d -cpp MESOSCALE | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys fi else if [[ "${phys}" == *"mars"* ]] then nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d | tee libo/log_compile_phys2 | grep 'warnings' >> libo/log_compile_phys2 elif [[ "${phys}" == *"venus"* ]] then nohup ./makelmdz -full -p venus -d 51 rcm1d -arch linux-ifort_meso -cpp MESOSCALE | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys # on /u/ and /planeto/ nohup ./makelmdz -p venus -d 51 rcm1d -arch linux-ifort_meso -cpp MESOSCALE | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys #nohup ./makelmdz -full -p venus -d 51 rcm1d -arch CICLADifort -cpp MESOSCALE | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys # on CICLAD #nohup ./makelmdz -p venus -d 51 rcm1d -arch CICLADifort -cpp MESOSCALE | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys #nohup ./makelmdz -full -p venus -d 51 rcm1d -arch X64_MESU -cpp MESOSCALE | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys #on MESU #nohup ./makelmdz -p venus -d 51 rcm1d -arch X64_MESU -cpp MESOSCALE | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys #nohup makelmdz -full -p venus -d 51 rcm1d -arch X64_OCCIGEN -cpp MESOSCALE | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys #on OCCIGEN #nohup makelmdz -p venus -d 51 rcm1d -arch X64_OCCIGEN -cpp MESOSCALE | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys elif [[ "${phys}" == *"generic"* ]] then echo $PWD/libo/log_compile_phys2 nohup ./makelmdz -t 1 -p std -b 38x36 -full -s 1 -d 25 rcm1d -arch mascaret_gfortran_para -cpp MESOSCALE | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys #Proxb nohup ./makelmdz -t 1 -p std -b 38x36 -s 1 -d 25 rcm1d -arch mascaret_gfortran_para -cpp MESOSCALE | tee libo/log_compile_phys2 | grep 'warnings' >> libo/log_compile_phys2 #Proxb elif [[ "${phys}" == *"titan"* ]] then nohup makelmdz -full -t ${tra} -p titan -b 23x23 -d 25 rcm1d -cpp MESOSCALE | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys fi fi echo ... done # clean the duplicate routines cd libf duplicate1 2> /dev/null cd .. # merge LMD executables in one lib #-------------------------------------- cd libo mkdir temp if [[ "${phys}" == *"mars"* ]] then cp -f LINUX*/*.a temp else #VENUS and GENERIC # cp -f linux*/*.a temp/ # on /u/ and /planeto/ cp -f */*.a temp/ # on /u/ and /planeto/ #cp -f /home/mlefevre/modipsl/lib/libioipsl.a temp/ #on CICLAD #cp -f X64*/*.a temp #on MESU and OCCIGEN cp -f $pathioipsl/libioipsl.a temp/ fi cd temp if [[ "${phys}" == *"mars"* ]] then ar x libbibio.a ar x libphymars.a ar x libaeronomars.a elif [[ "${phys}" == *"venus"* ]] then ar x libphyvenus.a ar x libmisc.a ar x libphy_common.a ar x libioipsl.a elif [[ "${phys}" == *"generic"* ]] then ar x libphystd.a ar x libmisc.a ar x libphy_common.a ar x libioipsl.a elif [[ "${phys}" == *"titan"* ]] then ar x libchimtitan.a ar x libphytitan.a ar x libmisc.a ar x libphy_common.a ar x libioipsl.a fi \rm *.a ar r liblmd.a * cp -f liblmd.a .. cd .. \rm -r temp nm liblmd.a > liblmd_content # finish merge cd .. if [[ "${phys}" == *"new"* ]] then if [[ "${phys}" == *"mars"* ]] then # include modules for interfacing mv *.mod ../inc/ else # mv ./libo/linux*/*.mod ../inc/ # on /u/ and /planeto/ mv ./libo/*/*.mod ../inc/ # on /u/ and /planeto/ #mv ./libo/CICLAD*/*.mod ../inc/ # on CICLAD #mv ./libo/X64*/*.mod ../inc/ # on MESU and OCCIGEN cp -f $pathioipsl/*.mod ../inc/ fi fi # save a copy #-------------- cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra} echo '****************************************' # ok #---- cd .. # manage nest includes in module_lmd_driver.F #---- cp call_meso_inifis$dom.inc call_meso_inifis.inc cp call_meso_physiq$dom.inc call_meso_physiq.inc fi ################################################## # END compile physics ################################################## #------------------ # compile WRF #------------------ if [ ${justphys} -eq 0 ] then echo 2. compiling WRF dynamical core ... #if [[ "${phys}" == "nophys_" ]] #then # echo 'NO LMD PHYSICS included' #else # if [[ ! ( -f "call_meso_physiq.inc" ) ]] # then # echo 'did you compile the physics ? no call_meso_physiq.inc !' # exit # fi #fi # be sure to compile with the most recent physics touch phys/module_lmd_driver.F # talk to user echo '>>> compiling ... this may be long ... <<<' echo check progress in: echo $PWD/log_compile echo check possible errors in: echo $PWD/log_error # compile ... echo '>>> YOUR CONFIG IS : '${config} case ${config} in 'real') ./compile em_real > log_compile 2> log_error # save executables cd main if [[ -f real.exe ]] then echo 'Looks good ! real.exe is here...' fi if [[ -f wrf.exe ]] then echo 'Looks good ! wrf.exe is here...' fi cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe cd .. ;; 'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null #echo '>>> YOUR CONFIG IS : '${config} ./compile em_quarter_ss > log_compile 2> log_error # save executables cd main if [[ -f ideal.exe ]] then echo 'Looks good ! ideal.exe is here...' fi if [[ -f wrf.exe ]] then echo 'Looks good ! wrf.exe is here...' fi cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe cd .. ;; 'les') #echo '>>> YOUR CONFIG IS : '${config} mkdir 'test/em_les' 2> /dev/null ./compile em_les ###> log_compile 2> log_error # save executables cd main if [[ -f ideal.exe ]] then echo 'Looks good ! ideal.exe is here...' fi if [[ -f wrf.exe ]] then echo 'Looks good ! wrf.exe is here...' fi cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe cd .. ;; *) echo not supported... please use ; echo ideal les ; exit ;; esac echo '*******last lines from log_error*********' tail -n 20 log_error fi # the end echo '****************************************' echo 'done.' echo '****************************************' cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc} mv last ../../ svn info ../../ > ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.svn.info # link latest compiled folder as LATEST cd ../../ rm -rf LATEST ln -sf ${conf_wrf} LATEST # link latest compiled exec cd LATEST case ${config} in 'real') ln -sf real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe real.exe ;; 'ideal') ln -sf ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe ideal.exe ;; 'les') ln -sf ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe ideal.exe ;; esac ln -sf wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe wrf.exe cd .. # add here specific messages if [[ "${dom}" != "1" ]] then nest=$(expr ${lon} + 4) echo NB: in namelist.input, please set: echo ' max_dom = '$dom' s_we = 1,1, e_we = '$lon','$nest', s_sn = 1,1, e_sn = '$lat','$nest', s_vert = 1,1, e_vert = '$level','$level',' fi