#! /bin/bash
####
#### A. Spiga -- 2010 -- 
####


\rm -rf WRFV2


#
## WRF modeling system software Version 3.0.1.1 (August 22, 2008)
#

wget --no-check-certificate http://www2.mmm.ucar.edu/wrf/src/WRFV3.0.1.1.TAR.gz
tar xzvf WRFV3.0.1.1.TAR.gz
\rm WRFV3.0.1.1.TAR.gz
#mv WRFV3/* .
#rmdir WRFV3

  #### faking stuff for copy_model script
  mv WRFV3 WRFV2
  touch in_reality_this_is_WRFV3_but_is_named_WRFV2_for_continuity
  cd WRFV2
  ln -sf ../../WRFV2/mars_lmd .
  ln -sf ../../WRFV2/mars_lmd_new .
  ln -sf ../../WRFV2/venus_lmd_new .
  ln -sf ../../WRFV2/generic_lmd_new .
  ln -sf ../../WRFV2/titan_lmd_new .
  ln -sf ../modif_mars .
  ln -sf ../../WRFV2/*.h .
  ln -sf ../../WRFV2/physics.sed .
  cp ../../WRFV2/call_meso_inifis?.inc .
  cp ../../WRFV2/call_meso_physiq?.inc .
  touch configure.defaults.dummy
  touch mars.sed.dummy
  mkdir external/RSL
  mkdir external/RSL/RSL
  touch external/RSL/RSL.dummy
  touch external/RSL/RSL/RSL.dummy

#
## Replacing Mars files
#

#tar xzvf LMD_LES_MARS_patches.tar.gz 
#mv LMD_LES_MARS_patches LMD_LES_MARS/modif_mars
#cd LMD_LES_MARS
#ln -sf ../LMD_LES_MARS_patches modif_mars

#cd modif_mars
#ln -sf ../../LMD_MM_MARS/SRC/WRFV2/phys/module_lmd_driver.F
#cd ..
cd arch
ln -sf ../modif_mars/configure_new.defaults .
cd ..

cd dyn_em
ln -sf ../modif_mars/module_big_step_utilities_em.F .
ln -sf ../modif_mars/module_first_rk_step_part1.F . 
ln -sf ../modif_mars/module_first_rk_step_part2.F .
ln -sf ../modif_mars/module_initialize_les.F .
ln -sf ../modif_mars/solve_em.F .
ln -sf ../modif_mars/module_em.F .
ln -sf ../modif_mars/module_diffusion_em.F .
ln -sf ../modif_mars/Makefile_dyn_em Makefile
ln -sf ../modif_mars/module_init_utilities.F .
cd ..

cd frame
ln -sf ../modif_mars/module_driver_constants.F .
cd ..

cd Registry
ln -sf ../modif_mars/Registry.EM .
ln -sf ../modif_mars/Registry.EM.newphys .
ln -sf ../modif_mars/Registry.bash .
cd ..

cd phys
ln -sf ../modif_mars/Makefile .
ln -sf ../modif_mars/module_lmd_driver.F .
ln -sf ../modif_mars/module_physics_addtendc.F .
ln -sf ../modif_mars/module_physics_init.F .
ln -sf ../modif_mars/module_lmd_driver.F.new .
ln -sf ../modif_mars/dynphy_wrf_* .
cd ..

cd share
ln -sf ../modif_mars/module_model_constants.F .
cd ..


ln -sf modif_mars/makeles .


### create a fake directory
mkdir -p mars_lmd/libf/phymars



# M Lefevre: option -C makes things bad in some OS
cd external
sed 's/-C//g' esmf_time_f90/Makefile > zolbxs ; mv zolbxs esmf_time_f90/Makefile
sed 's/-C//g' ioapi_share/makefile > zolbxs ; mv zolbxs ioapi_share/makefile
sed 's/-C//g' io_esmf/makefile > zolbxs ; mv zolbxs io_esmf/makefile
sed 's/-C//g' io_grib1/Makefile > zolbxs ; mv zolbxs io_grib1/Makefile
sed 's/-C//g' io_grib2/Makefile > zolbxs ; mv zolbxs io_grib2/Makefile
sed 's/-C//g' io_grib_share/Makefile > zolbxs ; mv zolbxs io_grib_share/Makefile
sed 's/-C//g' io_int/makefile > zolbxs ; mv zolbxs io_int/makefile
sed 's/-C//g' io_mcel/makefile > zolbxs ; mv zolbxs io_mcel/makefile
sed 's/-C//g' io_netcdf/makefile > zolbxs ; mv zolbxs io_netcdf/makefile
sed 's/-C//g' io_phdf5/Makefile > zolbxs ; mv zolbxs io_phdf5/Makefile
sed 's/-C//g' io_pnetcdf/makefile > zolbxs ; mv zolbxs io_pnetcdf/makefile
sed 's/-C//g' RSL_LITE/makefile > zolbxs ; mv zolbxs RSL_LITE/makefile
cd ..