#! /bin/bash


echo '*** linking sources from ...'
WRFSRC=$PWD/SRC/
echo $WRFSRC
echo '*** to ...'
HERE=$PWD
echo $HERE


#mkdir WPS
#cd WPS
#ln -sf $WRFSRC/WPS/wps_mars .
#ln -sf $WRFSRC/WPS/switch_WPS_Mars .
#cd ..

mkdir WRFV2
cd WRFV2 

echo '*** start defining folders and links'
ln -sf $WRFSRC/WRFV2/clean . 
ln -sf $WRFSRC/WRFV2/compile .
#ln -sf $WRFSRC/WRFV2/makemeso .
ln -sf $WRFSRC/WRFV2/configure .
ln -sf $WRFSRC/WRFV2/Makefile .
ln -sf $WRFSRC/WRFV2/mars.sed* .
ln -sf $WRFSRC/WRFV2/*.h .
ln -sf $WRFSRC/WRFV2/configure.defaults.* .
ln -sf $WRFSRC/WRFV2/call_meso_inifis?.inc .
ln -sf $WRFSRC/WRFV2/call_meso_physiq?.inc .

#\rm meso_dimphys.h
#cp $WRFSRC/WRFV2/meso_dimphys.h .
#cp $WRFSRC/WRFV2/call_*.inc .
#cp $WRFSRC/WRFV2/custom*.inc .
mkdir Registry
ln -sf $WRFSRC/WRFV2/Registry/* Registry/
mkdir arch
ln -sf $WRFSRC/WRFV2/arch/* arch/
mkdir dyn_em
ln -sf $WRFSRC/WRFV2/dyn_em/* dyn_em/
mkdir dyn_exp
ln -sf $WRFSRC/WRFV2/dyn_exp/* dyn_exp/
mkdir dyn_nmm
ln -sf $WRFSRC/WRFV2/dyn_nmm/* dyn_nmm/
mkdir frame
ln -sf $WRFSRC/WRFV2/frame/* frame/
mkdir inc
ln -sf $WRFSRC/WRFV2/inc/* inc/
mkdir main
ln -sf $WRFSRC/WRFV2/main/* main/
mkdir phys
ln -sf $WRFSRC/WRFV2/phys/* phys/
mkdir run
ln -sf $WRFSRC/WRFV2/run/* run/
mkdir share
ln -sf $WRFSRC/WRFV2/share/* share/
mkdir tools
ln -sf $WRFSRC/WRFV2/tools/* tools/
\rm tools/DOMAIN_TIME_TEST
\rm tools/CodeBase
mkdir tools/DOMAIN_TIME_TEST
ln -sf $WRFSRC/WRFV2/tools/DOMAIN_TIME_TEST/* tools/DOMAIN_TIME_TEST/
mkdir tools/CodeBase
ln -sf $WRFSRC/WRFV2/tools/CodeBase/* tools/CodeBase/
mkdir external
ln -sf $WRFSRC/WRFV2/external/Makefile external/
mkdir external/io_int
ln -sf $WRFSRC/WRFV2/external/io_int/* external/io_int/
mkdir external/esmf_time_f90
ln -sf $WRFSRC/WRFV2/external/esmf_time_f90/* external/esmf_time_f90/
mkdir external/io_netcdf
ln -sf $WRFSRC/WRFV2/external/io_netcdf/* external/io_netcdf/
mkdir external/io_grib1
ln -sf $WRFSRC/WRFV2/external/io_grib1/* external/io_grib1/
\rm external/io_grib1/MEL_grib1
\rm external/io_grib1/WGRIB
\rm external/io_grib1/build
\rm external/io_grib1/grib1_util
mkdir external/io_grib1/MEL_grib1
ln -sf $WRFSRC/WRFV2/external/io_grib1/MEL_grib1/* external/io_grib1/MEL_grib1/
mkdir external/io_grib1/WGRIB
ln -sf $WRFSRC/WRFV2/external/io_grib1/WGRIB/* external/io_grib1/WGRIB/
mkdir external/io_grib1/grib1_util
ln -sf $WRFSRC/WRFV2/external/io_grib1/grib1_util/* external/io_grib1/grib1_util/
mkdir external/io_grib1/build
mkdir external/io_grib_share
ln -sf $WRFSRC/WRFV2/external/io_grib_share/* external/io_grib_share/
\rm external/io_grib_share/build
mkdir external/io_grib_share/build
ln -sf $WRFSRC/WRFV2/external/io_grib_share/build/* external/io_grib_share/build/
mkdir external/ioapi_share
ln -sf $WRFSRC/WRFV2/external/ioapi_share/* external/ioapi_share/
mkdir external/io_phdf5
ln -sf $WRFSRC/WRFV2/external/io_phdf5/* external/io_phdf5/
mkdir external/RSL_LITE
ln -sf $WRFSRC/WRFV2/external/RSL_LITE/* external/RSL_LITE/
mkdir external/io_grib2
ln -sf $WRFSRC/WRFV2/external/io_grib2/* external/io_grib2/
\rm external/io_grib2/bacio-1.3
\rm external/io_grib2/g2lib
mkdir external/io_grib2/bacio-1.3
ln -sf $WRFSRC/WRFV2/external/io_grib2/bacio-1.3/* external/io_grib2/bacio-1.3/
mkdir external/io_grib2/g2lib
ln -sf $WRFSRC/WRFV2/external/io_grib2/g2lib/* external/io_grib2/g2lib/
mkdir external/io_pnetcdf
ln -sf $WRFSRC/WRFV2/external/io_pnetcdf/* external/io_pnetcdf/
mkdir external/RSL
ln -sf $WRFSRC/WRFV2/external/RSL/* external/RSL/
\rm external/RSL/RSL
mkdir external/RSL/RSL
ln -sf $WRFSRC/WRFV2/external/RSL/RSL/* external/RSL/RSL/
mkdir external/io_esmf
ln -sf $WRFSRC/WRFV2/external/io_esmf/* external/io_esmf/
mkdir external/io_mcel
ln -sf $WRFSRC/WRFV2/external/io_mcel/* external/io_mcel/
mkdir mars_lmd
mkdir mars_lmd/libf
ln -sf $WRFSRC/WRFV2/mars_lmd/makegcm* mars_lmd/
ln -sf $WRFSRC/WRFV2/mars_lmd/create_make_gcm mars_lmd/
#ln -sf $WRFSRC/WRFV2/mars_lmd/makefile mars_lmd/
ln -sf $WRFSRC/WRFV2/mars_lmd/libf/duplicate* mars_lmd/libf/
ln -sf $WRFSRC/WRFV2/mars_lmd/libf/generate* mars_lmd/libf/

mkdir mars_lmd/libf/grid
ln -sf $WRFSRC/WRFV2/mars_lmd/libf/grid/* mars_lmd/libf/grid/
mkdir mars_lmd/libf/phymars
ln -sf $WRFSRC/WRFV2/mars_lmd/libf/phymars/* mars_lmd/libf/phymars/
mkdir mars_lmd/libf/dyn3d
ln -sf $WRFSRC/WRFV2/mars_lmd/libf/dyn3d/* mars_lmd/libf/dyn3d/
mkdir mars_lmd/libf/aeronomars
ln -sf $WRFSRC/WRFV2/mars_lmd/libf/aeronomars/* mars_lmd/libf/aeronomars/
mkdir mars_lmd/libf/bibio
ln -sf $WRFSRC/WRFV2/mars_lmd/libf/bibio/* mars_lmd/libf/bibio/
mkdir mars_lmd/libo
#touch mars_lmd/makefile

mkdir test
mkdir test/em_real
mkdir test/em_quarter_ss
ln -sf $WRFSRC/WRFV2/test/em_real/* test/em_real/

cd mars_lmd/libf/phymars/
\rm dimphys.h
#ln -sf ../../../meso_dimphys.h dimphys.h
cd ../../..

echo '*** end'