Changeset 870

Timestamp:

Jan 24, 2013, 4:40:55 PM (12 years ago)

Author:

aslmd

Message:

LMDZ.UNIVERSAL. Added compiling for large domains on Gnome. Wrote a better README.

Location:

trunk

Files:

• LMDZ.COMMON/arch/arch-GNOMEp_large.fcm (added)
• LMDZ.COMMON/arch/arch-GNOMEp_large.path (added)
• LMDZ.UNIVERSAL/README.aymeric (modified) (3 diffs)
• LMDZ.UNIVERSAL/libf/phygeneric/generatedoth.sh (modified) (1 diff)
• LMDZ.UNIVERSAL/libf/phygeneric/iophy.F90 (modified) (2 diffs)

trunk/LMDZ.UNIVERSAL/README.aymeric

@@ +1 @@
+
+***** en parallele dans LMDZ.UNIVERSAL
+--> ciclad
+makelmdz_fcm -d 64x48x20 -arch CICLADifort -parallel mpi -p generic gcm
+makelmdz_fcm -d 64x48x20 -arch CICLADifort -parallel mpi -p generic -debug gcm
+--> gnome
+makelmdz_fcm -d 128x96x20 -arch GNOMEp -parallel mpi -p generic gcm
+
+**** sequentiel dans LMDZ.UNIVERSAL
+makelmdz_fcm -d 64x48x20 -arch CICLADifort-seq -p generic -debug gcm
+
+**** pour comparer avec LMDZ.GENERIC (compiler dans le dossier de simu avec le lien absolu)
+**** (attention il faut utiliser un traceur.def legerement different)
+/home/spiga/MODELES/LMDZ.GENERIC/makegcm -d 64x48x20 -t 2 gcm
+**** ou plutot pour ne pas s'embeter avec les traceurs et regler peu de bandes
+/home/spiga/MODELES/LMDZ.GENERIC/makegcm -d 64x48x20 -t 0 -s 1 -b 3x2 gcm
+**** (attention il faut utiliser un traceur.def legerement different)
+
+**** ETAT INITIAUX
+**** POUR LE MOMENT DANS LMDZ.GENERIC
+--> pour start2archive (pas sur qu'il faille encore NOTRAC)
+/home/spiga/MODELES/LMDZ.GENERIC/makegcm -d 64x48x20 -t 0 -debug -cpp NOTRAC start2archive > logcomp
+--> pour newstart
+/home/spiga/MODELES/LMDZ.GENERIC/makegcm -d 64x48x20 -t 0 newstart
+/home/spiga/MODELES/LMDZ.GENERIC/makegcm -d 128x96x20 -t 0 -debug -cpp NOTRAC newstart
+
+--------------------------------------------------
+FOR LARGE DOMAINS (sur gnome au dela de 256x192)
+1. recompile netcdf (see below)
+2. apply patches for large domains in LMDZ.GENERIC (this is for newstart)
+3. compile with -arch GNOMEp_large
+makelmdz_fcm -d 256x256x20 -arch GNOMEp_large -parallel mpi -p generic gcm
+--------------------------------------------------
+
+--------------------------------------------------
+NETCDF RECOMPILE FOR LARGE DOMAINS
+--------------------------------------------------
+
+
+>>> Prepare things for install:
+gunzip netcdf.tar.gz
+tar xf netcdf.tar
+cd netcdf-4.0.1
+
+export CPP="icc -E"
+export F77=ifort
+export FFLAGS="-O2 -ip -no-prec-div -mcmodel=large -shared-intel -fPIC"
+export F90=ifort
+export FCFLAGS="-O2 -ip -no-prec-div -mcmodel=large -shared-intel -fPIC"
+export CC=icc
+export CFLAGS="-O2 -ip -no-prec-div -mcmodel=large -shared-intel -fPIC"
+export CXX=icpc
+export CXXFLAGS="-O2 -ip -no-prec-div -mcmodel=large -shared-intel -fPIC"
+#export LDFLAGS="-mcmodel=large -shared-intel -fPIC"
+
+
+make clean
+
+./configure --prefix=/san/home/spiga/netcdf.4.0.1 --enable-shared > configure.log 2>&1
+
+>>> go for it !
+make > make.log 2>&1
+>>>> some warnings, but no errors
+>> Tests:
+make test > make_test.log 2>&1
+>>>> Everything seems OK
+
+make install > make_install.log 2>&1
+
+
+-Wl,-rpath -Wl,
+
+----------------------------------------------------------------------
+Libraries have been installed in:
+   /san/home/spiga/netcdf.4.0.1/lib
+
+If you ever happen to want to link against installed libraries
+in a given directory, LIBDIR, you must either use libtool, and
+specify the full pathname of the library, or use the `-LLIBDIR'
+flag during linking and do at least one of the following:
+   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
+     during execution
+   - add LIBDIR to the `LD_RUN_PATH' environment variable
+     during linking
+   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
+   - have your system administrator add LIBDIR to `/etc/ld.so.conf'
+
+See any operating system documentation about shared libraries for
+more information, such as the ld(1) and ld.so(8) manual pages.
+----------------------------------------------------------------------
+
+
+
+vieilles notes lorsqu'on etait avec LMDZ5 et pas LMDZ.COMMON
 
 faire descendre
@@ -14 +108 @@
 
 
-penser à compiler IOIPSL voir dans LMDZ.COMMON
+penser |  compiler IOIPSL voir dans LMDZ.COMMON
 puis modifier arch.path
 et compiler et c'est bon
@@ -21 +115 @@
 mais IL FAUT ENLEVER LES OPTIONS APRES NC_DOUBLE
 
-
 makelmdz_fcm -d 48x36x19 -arch CICLADifort -parallel mpi -p dev gcm > log_makelmdz_fcm &
-
 ou pas dev
-
-
 makelmdz_fcm -d 48x36x19 -arch CICLADifort -parallel mpi -p dev gcm
-
-makelmdz_fcm -d 64x48x20 -arch CICLADifort -parallel mpi -p generic gcm -debug
-
-
-makelmdz_fcm -d 64x48x20 -arch CICLADifort -parallel mpi -p generic -debug gcm
-makelmdz_fcm -d 64x48x20 -arch CICLADifort -parallel mpi -p generic gcm
-
-
-makelmdz_fcm -d 64x48x20 -arch CICLADifort-seq -p generic -debug gcm
-makegcm -d 64x48x20 -t 2 gcm
-
 makelmdz_fcm -d 128x96x20 -arch GNOMEp -parallel mpi -p generic gcm
 
+pour initialisation idealisee, qqch comme iniaqua dans phyaqua ???
 
-/home/spiga/MODELES/LMDZ.GENERIC/makegcm -d 64x48x20 -t 0 -debug -cpp NOTRAC start2archive > logcomp
-
-/home/spiga/MODELES/LMDZ.GENERIC/makegcm -d 64x48x20 -t 0 newstart
-
-/home/spiga/MODELES/LMDZ.GENERIC/makegcm -d 128x96x20 -t 0 -debug -cpp NOTRAC newstart
-
-/home/spiga/MODELES/LMDZ.GENERIC/makegcm -d 64x48x20 -t 0 -s 1 -b 3x2 gcm
-
-
-pour initialisation idealisee, qqch comme iniaqua dans phyaqua ???

trunk/LMDZ.UNIVERSAL/libf/phygeneric/generatedoth.sh

@@ -5 +5 @@
 bandir=36
 
+## 3x2
 bandvis=3
 bandir=2
+
+## 38x36
+bandvis=38
+bandir=36
+
 
 scatterers=1

trunk/LMDZ.UNIVERSAL/libf/phygeneric/iophy.F90

@@ -128 +128 @@
   USE mod_phys_lmdz_para
   use ioipsl
-  use write_field
   implicit none
   include 'dimensions.h'
@@ -158 +157 @@
   USE mod_grid_phy_lmdz
   use ioipsl
-  use write_field
   implicit none
   include 'dimensions.h'