Changeset 3766 for trunk/LMDZ.MARS/deftank/adastra
- Timestamp:
- May 15, 2025, 6:26:24 PM (3 months ago)
- Location:
- trunk/LMDZ.MARS/deftank/adastra
- Files:
-
- 2 edited
-
run0 (modified) (6 diffs)
-
run_month1 (modified) (1 diff)
Legend:
- Unmodified
- Added
- Removed
-
trunk/LMDZ.MARS/deftank/adastra/run0
r3033 r3766 1 1 #!/bin/bash 2 ######################################################################## ###2 ######################################################################## 3 3 # Script to perform several chained LMD Mars GCM simulations 4 4 # SET HERE the maximum total number of simulations … … 9 9 gcm=gcm_64x48x54_phymars_para.e 10 10 # 11 ######################################################################## ###11 ######################################################################## 12 12 set -x 13 13 14 14 echo "---------------------------------------------------------" 15 echo " starting run0"15 echo "Starting run0..." 16 16 17 17 dir=`pwd` … … 19 19 address=`whoami` 20 20 21 # Look for file "num_run" which should contain 21 # Check if GCM executable exists and is executable 22 if [ ! -x $gcm ]; then 23 echo "Error: file \"$gcm\" not found or not executable in $dir!" 24 exit 1 25 fi 26 27 # Look for file "num_run" which should contain 22 28 # the value of the previously computed season 23 29 # (defaults to 0 if file "num_run" does not exist) 24 30 if [[ -r num_run ]] ; then 25 echo " found file num_run"31 echo "Found file \"num_run\"" 26 32 numold=`cat num_run` 27 33 else 28 34 numold=0 29 35 fi 30 echo "numold is set to" $ {numold}36 echo "numold is set to" $numold 31 37 32 33 # Set value of current season 34 (( numnew = ${numold} + 1 )) 35 echo "numnew is set to" ${numnew} 38 # Set value of current season 39 numnew=$((numold + 1 )) 40 echo "numnew is set to" $numnew 36 41 37 42 # Look for initialization data files (exit if none found) … … 40 45 \cp -f startfi${numold}.nc startfi.nc 41 46 else 42 if (( ${numold}== 99999 )) ; then43 echo "No run because previous run crashed ! (99999 in num_run)"44 exit47 if (( numold == 99999 )) ; then 48 echo "Error: no run because previous run crashed! (99999 in \"num_run\")" 49 exit 1 45 50 else 46 echo "Where is file start"${numold}".nc??"47 exit51 echo "Error: missing input files \"start${numold}.nc\" or \"startfi${numold}.nc\" in $dir!" 52 exit 1 48 53 fi 49 54 fi … … 51 56 52 57 # Run GCM 53 srun --cpu-bind=threads --label -c${OMP_NUM_THREADS:=1} $gcm > lrun${numnew} 2>&1 58 srun --cpu-bind=threads --label -c${OMP_NUM_THREADS:=1} $gcm > lrun${numnew} 2>&1 54 59 55 60 56 61 # Check if run ended normaly and copy datafiles 57 62 if [[ ( -r restartfi.nc && -r restart.nc ) ]] ; then 58 echo "Run seems to have ended normal y"63 echo "Run seems to have ended normally." 59 64 \mv -f restartfi.nc startfi${numnew}.nc 60 65 \mv -f restart.nc start${numnew}.nc 61 66 else 67 echo "Error: Run crashed or incomplete output!" 62 68 if [[ -r num_run ]] ; then 63 69 \mv -f num_run num_run.crash 64 70 else 65 echo "No file num_run to build num_run.crash from !!"71 echo "No file num_run to build \"num_run.crash\" from!" 66 72 # Impose a default value of 0 for num_run 67 73 echo 0 > num_run.crash 68 74 fi 69 echo 99999 > num_run75 echo 99999 > num_run 70 76 ############## To receive an Email message if the run crashes ######## 71 mail -s "crash run GCM" $address <<ENDMAIL 72 The run on $machine in $dir has just crashed. 77 mail -s "Crash in GCM run" $address <<ENDMAIL 78 The GCM run on $machine in $dir has just crashed. 79 Check the output logs for more information. 73 80 ENDMAIL 74 ############################################ ""75 exit81 ############################################# 82 exit 1 76 83 fi 77 84 … … 93 100 # Prepare things for upcoming runs by writing 94 101 # value of computed season in file num_run 95 echo $ {numnew}> num_run102 echo $numnew > num_run 96 103 97 104 # If we are over nummax : stop 98 105 if (( $numnew + 1 > $nummax )) ; then 99 exit106 exit 0 100 107 else 101 102 103 fi 108 \cp -f run0 exe_mars 109 ./exe_mars 110 fi -
trunk/LMDZ.MARS/deftank/adastra/run_month1
r3033 r3766 4 4 #SBATCH --constraint=GENOA 5 5 #SBATCH --nodes=1 6 #SBATCH --ntasks-per-node=24 6 #SBATCH --ntasks-per-node=24 7 7 #SBATCH --cpus-per-task=4 8 8 #SBATCH --threads-per-core=1 # --hint=nomultithread 9 9 #SBATCH --exclusive 10 10 #SBATCH --output=run_month1_%A.out 11 #SBATCH --time=01:25:00 11 #SBATCH --time=01:25:00 12 12 13 13 ## Script to run chained simulations 14 ## (uses script "run0" and reference file "run.def.ref") 15 ## Set values of "num_now" and "num_end" in the script below 16 ## to set initial month # and final month # of the simulation 14 17 15 18 # A few parameters that might need be changed depending on your setup: 16 19 # Path to the arch.env to source 17 20 source ../trunk/LMDZ.COMMON/arch.env 18 # Number of threads to use (must be the same as "#SBATCH --cpus-per-task=" above) 19 export OMP_NUM_THREADS= 421 # Number of threads to use (must be the same as "#SBATCH --cpus-per-task=" above) 22 export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK 20 23 export OMP_STACKSIZE=400M 24 # 25 ######################################################################## 26 set -exv 27 ls -al 28 trap 'echo -e "Error at line $LINENO!"' ERR 21 29 22 set -xv 23 ls -al 24 25 ## set starting month and ending month below: 30 # Set starting month and ending month below: 26 31 num_now=1 27 32 num_end=12 28 (( num_previous = $num_now - 1 ))33 num_previous=$(( num_now - 1 )) 29 34 30 35 echo "$num_previous" > num_run 31 36 # next month number 32 (( num_next = $num_now + 1 ))37 num_next=$(( num_now + 1 )) 33 38 # true (i.e. modulo 12) month number 34 (( true_num = $num_now % 12 ))39 true_num=$(( num_now % 12 )) 35 40 41 # Check if required files exist 36 42 \rm -f error; touch error 37 43 44 if [ ! -f run.def.ref ]; then 45 echo "Error: file \"run.def.ref\" not found in current directory!" > error 46 exit 1 47 fi 48 49 if [ ! -x run0 ]; then 50 echo "Error: file \"run0\" not found or not executable in current directory!" > error 51 exit 1 52 fi 53 54 if [ ! -f run_month$num_now ]; then 55 echo "Error: file \"run_month${num_now}\" not found in current directory!" > error 56 exit 1 57 fi 58 59 # Run model depending on current month 38 60 case $true_num in 39 1 ) sed s/9999/61/ run.def.ref > run.def ; run0 >> error ;; #140 2 ) sed s/9999/66/ run.def.ref > run.def ; run0 >> error ;; #241 3 ) sed s/9999/66/ run.def.ref > run.def ; run0 >> error ;; #342 4 ) sed s/9999/65/ run.def.ref > run.def ; run0 >> error ;; #443 5 ) sed s/9999/60/ run.def.ref > run.def ; run0 >> error ;; #544 6 ) sed s/9999/54/ run.def.ref > run.def ; run0 >> error ;; #645 7 ) sed s/9999/50/ run.def.ref > run.def ; run0 >> error ;; #746 8 ) sed s/9999/46/ run.def.ref > run.def ; run0 >> error ;; #847 9 ) sed s/9999/47/ run.def.ref > run.def ; run0 >> error ;; #948 10 ) sed s/9999/47/ run.def.ref > run.def ; run0 >> error ;; #1049 11 ) sed s/9999/51/ run.def.ref > run.def ; run0 >> error ;; #1150 0 ) sed s/9999/56/ run.def.ref > run.def ; run0 >> error ;; #1251 * ) echo " error";;61 1 ) sed s/9999/61/ run.def.ref > run.def ; ./run0 >> error ;; #1 62 2 ) sed s/9999/66/ run.def.ref > run.def ; ./run0 >> error ;; #2 63 3 ) sed s/9999/66/ run.def.ref > run.def ; ./run0 >> error ;; #3 64 4 ) sed s/9999/65/ run.def.ref > run.def ; ./run0 >> error ;; #4 65 5 ) sed s/9999/60/ run.def.ref > run.def ; ./run0 >> error ;; #5 66 6 ) sed s/9999/54/ run.def.ref > run.def ; ./run0 >> error ;; #6 67 7 ) sed s/9999/50/ run.def.ref > run.def ; ./run0 >> error ;; #7 68 8 ) sed s/9999/46/ run.def.ref > run.def ; ./run0 >> error ;; #8 69 9 ) sed s/9999/47/ run.def.ref > run.def ; ./run0 >> error ;; #9 70 10 ) sed s/9999/47/ run.def.ref > run.def ; ./run0 >> error ;; #10 71 11 ) sed s/9999/51/ run.def.ref > run.def ; ./run0 >> error ;; #11 72 0 ) sed s/9999/56/ run.def.ref > run.def ; ./run0 >> error ;; #12 73 * ) echo "Error: Invalid value of true_num ($true_num)" ; exit 1 ;; 52 74 esac 53 75 54 # launch job for next month55 if (( $num_next <= $num_end )) ; then76 # Launch job for next month 77 if (( num_next <= num_end )) ; then 56 78 cp -f run_month$num_now tmp 57 79 sed -e "s@run_month${num_now}@run_month${num_next}@" \ 58 80 -e "s@num_now=${num_now}@num_now=${num_next}@" tmp > run_month$num_next 59 81 rm tmp 60 61 82 sbatch run_month$num_next 62 83 fi
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