Changeset 3567 for trunk/LMDZ.PLUTO

Timestamp:

Dec 19, 2024, 3:47:51 PM (4 days ago)

Author:

afalco

Message:

startarchi2icosa: simplified slightly process. dynamico start.nc and startfi.nc can be found in icosa_start/ folder now.
AF

Location:

trunk/LMDZ.PLUTO/util/startarchive2icosa

Files:

• compile (modified) (3 diffs)
• icosa_finalize.bash (modified) (2 diffs)
• job_start_archive_2icosa (modified) (1 diff)

trunk/LMDZ.PLUTO/util/startarchive2icosa/compile

@@ -1 +1 @@
 #!/usr/bin/bash
 
-LMDZ=${LMDZ:-../../..} # change to your LMDZ install dir
+# change to your LMDZ install dir or set "export LMDZ=/path/lmdz" in your .bashrc
+LMDZ=${LMDZ:-../../..}
 
 source $LMDZ/XIOS/arch.env
 source $LMDZ/XIOS/arch.path
 
-mpif90 -g -traceback start_archive2icosa.f90 \
+FLAGS="-g -traceback"
+FLAGS=
+
+mpif90 $FLAGS start_archive2icosa.f90 \
 $NETCDF_INCDIR $NETCDF_LIBDIR $NETCDF_LIB \
 $HDF5_INCDIR $HDF5_LIBDIR $HDF5_LIB \
@@ -13 +17 @@
 -o start_archive2icosa.e
 
-mpif90 -g -traceback rearrange_startphy.f90 \
+mpif90 $FLAGS rearrange_startphy.f90 \
 $NETCDF_INCDIR $NETCDF_LIBDIR $NETCDF_LIB \
 $HDF5_INCDIR $HDF5_LIBDIR $HDF5_LIB \
@@ -20 +24 @@
 -o rearrange_startphy.e
 
-#mpif90 -g -traceback rearrange_startphy_tsurf_cst.f90 \
+#mpif90 $FLAGS rearrange_startphy_tsurf_cst.f90 \
 #$NETCDF_INCDIR $NETCDF_LIBDIR $NETCDF_LIB \
 #$HDF5_INCDIR $HDF5_LIBDIR $HDF5_LIB \

trunk/LMDZ.PLUTO/util/startarchive2icosa/icosa_finalize.bash

@@ -7 +7 @@
 # load nco module
 module purge
-LMDZ=${LMDZ:-../trunk/}  #You have to adapt to your own path, can be in your bashrc
+# change to your LMDZ install dir or set "export LMDZ=/path/lmdz" in your .bashrc
+LMDZ=${LMDZ:-../../..}
 source $LMDZ/XIOS/arch.env
 #module load nco/4.7.9-gcc-4.8.5-hdf5-1.8.18-openmpi-2.0.4 #Example of version of the module needed
 module load nco
+
+# save start*nc from lmdz grid
+mkdir -p lmdz_starts
+cp start.nc startfi.nc lmdz_starts
 
 #conversion to netcdf 3 in order to rename and add variables, not properly done with netcdf4 files
@@ -58 +63 @@
 # cleanup
 rm -rf startphy_icosa_nc3.nc startphy_nc3.nc
+
+# copy icosa start files in icosa_starts folder
+mkdir -p icosa_starts
+mv start_icosa.nc icosa_starts/start.nc
+mv startfi.nc icosa_starts/startfi.nc
+
+# get back start files from lmdz grid
+cp lmdz_starts/* .

trunk/LMDZ.PLUTO/util/startarchive2icosa/job_start_archive_2icosa

@@ -10 +10 @@
 #SBATCH --output %x.%j.out
 
-arch=ifort_MESOIPSL
+arch=${ARCH:-ifort_MESOIPSL}
 source $HOME/lmdz/LMDZ.COMMON/arch/arch-$arch.env