Changeset 3355
- Timestamp:
- Jun 3, 2024, 5:27:45 PM (7 months ago)
- Location:
- trunk/LMDZ.COMMON/libf/evolution
- Files:
-
- 3 edited
-
changelog.txt (modified) (1 diff)
-
deftank/launchPEM.sh (modified) (2 diffs)
-
deftank/lib_launchPEM.sh (modified) (5 diffs)
Legend:
- Unmodified
- Added
- Removed
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trunk/LMDZ.COMMON/libf/evolution/changelog.txt
r3354 r3355 344 344 == 03/06/2024 == JBC 345 345 Addition of a script to execute multiple scripts in subdirectories (useful to launch multiple jobs at once for ex.) + Updates for several scripts in the deftank. 346 347 == 03/06/2024 == JBC 348 The launching script can now operate a relaunch from any already computed PCM/PEM run. The starting point is asked to the user interactively on the terminal. 349 Some features might not work very well yet since not every stituation has not been tested. -
trunk/LMDZ.COMMON/libf/evolution/deftank/launchPEM.sh
r3349 r3355 36 36 source lib_launchPEM.sh 37 37 38 if [ $# -eq 0 ]; then # From scratch 38 if [ $# -eq 0 ]; then 39 # Starting from scratch 39 40 echo "The launching script is starting!" 40 41 echo "The output file is \"log_launchPEM.txt\"." … … 45 46 initlaunch 46 47 cyclelaunch $nPCM_ini 48 47 49 else 48 if [ $1 = "new" ]; then # New cycle 50 # Starting a new cycle 51 if [ $1 = "new" ]; then 49 52 exec >> log_launchPEM.txt 2>&1 53 echo 50 54 echo "This is a new cycle for the PEM simulation." 51 55 date 52 56 read i_myear n_myear convert_years iPCM iPEM nPCM nPCM_ini < info_PEM.txt 53 57 cyclelaunch $nPCM 54 elif [ $1 = "re" ]; then # Relaunch 55 echo "Case not coded yet!" 56 errlaunch 58 59 # Starting a relaunch 60 elif [ $1 = "re" ]; then 61 if [ ! -f "info_PEM.txt" ]; then 62 echo "Error: file \"info_PEM.txt\" does not exist in $dir!" 63 echo "It is necessary to relaunch a PEM simulation." 64 errlaunch 65 fi 66 while true; do 67 echo "Do you want to relaunch from a 'PCM' or 'PEM' run?" 68 read relaunch 69 if [ $relaunch = "PCM" ] || [ $relaunch = "PEM" ]; then 70 break 71 else 72 echo "Invalid input. Please enter 'PCM' or 'PEM'." 73 fi 74 done 75 read i_myear n_myear convert_years iPCM iPEM nPCM nPCM_ini < info_PEM.txt 76 echo $i_myear $n_myear $convert_years $iPCM $iPEM $nPCM $nPCM_ini 77 while true; do 78 if [ $relaunch = "PCM" ]; then 79 echo "What is the number of the PCM run?" 80 echo "It should be between 1 and $iPCM." 81 read irelaunch 82 if [ 0 -lt $irelaunch ] && [ $irelaunch -le $iPCM ]; then 83 break 84 else 85 echo "Invalid input. Please enter a valid PCM run number." 86 fi 87 else 88 echo "What is the number of the PEM run?" 89 echo "It should be between 1 and $((iPEM - 1))." 90 read irelaunch 91 if [ 0 -lt $irelaunch ] && [ $irelaunch -le $iPEM ]; then 92 break 93 else 94 echo "Invalid input. Please enter a valid PEM run number." 95 fi 96 fi 97 done 98 exec >> log_launchPEM.txt 2>&1 99 echo 100 echo "This is a relaunch for the PEM simulation from the run $relaunch$irelaunch." 101 date 102 checklaunch 103 if [ $relaunch = "PCM" ]; then 104 relaunchPCM 105 else 106 relaunchPEM 107 fi 57 108 else 58 109 echo "Error: given argument '$1' for the launching script is unknown!" -
trunk/LMDZ.COMMON/libf/evolution/deftank/lib_launchPEM.sh
r3354 r3355 124 124 i_myear=0 125 125 iPEM=1 126 ((iPCM = ($iPEM - 1)*$nPCM + 1))126 iPCM=1 127 127 cp startfi.nc starts/ 128 128 if [ -f "start.nc" ]; then … … 139 139 submitPCM() { 140 140 find . -type f -name "jobPCM*.slurm" ! -name "jobPCM.slurm" -delete 141 ii=1 142 if [ ! -z $2 ]; then 143 ii=$2 144 fi 141 145 if [ $i_myear -lt $n_myear ]; then 142 echo "Run PCM $iPCM: call 1/$1..."146 echo "Run PCM $iPCM: call $ii/$1..." 143 147 cp jobPCM.slurm jobPCM${iPCM}.slurm 144 148 sed -i "s/#SBATCH --job-name=jobPCM.*/#SBATCH --job-name=jobPCM${iPCM}/" jobPCM${iPCM}.slurm 145 149 sed -i "s/^k=[0-9]\+$/k=$(echo "3 - $nPCM_ini" | bc -l)/" jobPCM${iPCM}.slurm 146 150 jobID=$(sbatch --parsable jobPCM${iPCM}.slurm) 151 # Create a file to cancel the dependent jobs of the cycle 147 152 echo "#!/bin/bash" > kill_launchPEM.sh 148 153 chmod +x kill_launchPEM.sh … … 150 155 ((iPCM++)) 151 156 ((i_myear++)) 157 ((ii++)) 152 158 else 153 159 endlaunch 154 160 fi 155 for ((i = 2; i <= $1; i++)); do161 for ((i = $ii; i <= $1; i++)); do 156 162 if [ $i_myear -lt $n_myear ]; then 157 163 echo "Run PCM $iPCM: call $i/$1..." … … 172 178 submitPEM() { 173 179 if [ $i_myear -lt $n_myear ]; then 180 echo "Run PEM $iPEM" 181 sed -i "s/#SBATCH --job-name=jobPEM.*/#SBATCH --job-name=jobPEM${iPEM}/" jobPEM.slurm 182 jobID=$(sbatch --parsable jobPEM.slurm) 183 # Create a file to cancel the dependent jobs of the cycle 184 echo "#!/bin/bash" > kill_launchPEM.sh 185 chmod +x kill_launchPEM.sh 186 echo "scancel" $jobID >> kill_launchPEM.sh 187 else 188 endlaunch 189 fi 190 } 191 192 # To make one cycle of PCM and PEM runs 193 cyclelaunch() { 194 # PCM runs 195 submitPCM $1 $2 196 197 # PEM run 198 if [ $i_myear -lt $n_myear ]; then 199 echo "Run PEM $iPEM" 174 200 sed -i "s/#SBATCH --job-name=jobPEM.*/#SBATCH --job-name=jobPEM${iPEM}/" jobPEM.slurm 175 201 jobID=$(sbatch --parsable --dependency=afterok:${jobID} jobPEM.slurm) … … 180 206 } 181 207 182 # To make one cycle of PCM and PEM runs 183 cyclelaunch() { 184 # PCM runs 185 submitPCM $1 186 187 # PEM run 188 submitPEM 189 } 208 # To relaunch from PCM run 209 relaunchPCM() { 210 iPCM=$(($irelaunch + 1)) 211 cp starts/restartfi${irelaunch}.nc startfi.nc 212 if [ -f "starts/restart${irelaunch}.nc" ]; then 213 cp starts/restart${irelaunch}.nc start.nc 214 elif [ -f "starts/restart1D${irelaunch}.txt" ]; then 215 cp starts/restart1D${irelaunch}.txt start1D.txt 216 fi 217 if [ $irelaunch -le $nPCM_ini ]; then 218 # PCM relaunch during the initialization cycle 219 iPEM=1 220 i_myear=$irelaunch 221 sed -i "1s/.*/$i_myear $n_myear $convert_years $iPCM $iPEM $nPCM $nPCM_ini/" info_PEM.txt 222 if [ $irelaunch -eq $(($nPCM_ini - 1)) ]; then 223 cp diags/data2reshape${irelaunch}.nc data2reshape_Y1.nc 224 cyclelaunch $nPCM_ini $irelaunch 225 elif [ $irelaunch -eq $nPCM_ini ]; then 226 cp diags/data2reshape$(($irelaunch - 1)).nc data2reshape_Y1.nc 227 cp diags/data2reshape${irelaunch}.nc data2reshape_Y2.nc 228 submitPEM # The next job is a PEM run 229 else 230 cyclelaunch $nPCM_ini $iPCM 231 fi 232 else 233 # PCM relaunch during a cycle 234 iPEM=$(($irelaunch/$nPCM + 1)) 235 il=$(echo "($irelaunch - $nPCM_ini)%$nPCM" | bc -l) 236 i_myear=$(($(awk "NR==$(($iPEM + 1)) {print \$1}" "info_PEM.txt") + $il)) 237 sed -i "1s/.*/$i_myear $n_myear $convert_years $iPCM $iPEM $nPCM $nPCM_ini/" info_PEM.txt 238 cp starts/restartpem${iPEM}.nc startpem.nc 239 if [ $il -eq $(($nPCM - 1)) ]; then 240 cp diags/data2reshape${irelaunch}.nc data2reshape_Y1.nc 241 cyclelaunch $nPCM $il 242 elif [ $il -eq $nPCM ]; then 243 cp diags/data2reshape$(($irelaunch - 1)).nc data2reshape_Y1.nc 244 cp diags/data2reshape${irelaunch}.nc data2reshape_Y2.nc 245 submitPEM # The next job is a PEM run 246 else 247 cyclelaunch $nPCM $il 248 fi 249 fi 250 } 251 252 # To relaunch from PEM run 253 relaunchPEM() { 254 iPEM=$irelaunch 255 iPCM=$(($nPCM_ini + ($nPCM - 1)*$irelaunch + 1)) 256 i_myear=$(awk "NR==$(($iPEM + 1)) {print \$1}" "info_PEM.txt") 257 sed -i "1s/.*/$i_myear $n_myear $convert_years $iPCM $iPEM $nPCM $nPCM_ini/" info_PEM.txt 258 cp starts/restartpem${irelaunch}.nc startpem.nc 259 cp starts/restartfi_postPEM${irelaunch}.nc startfi.nc 260 if [ -f "starts/restart_postPEM${irelaunch}.nc" ]; then 261 cp starts/restart_postPEM${irelaunch}.nc start.nc 262 elif [ -f "starts/restart1D_postPEM${irelaunch}.txt" ]; then 263 cp starts/restart1D_postPEM${irelaunch}.txt start1D.txt 264 fi 265 cyclelaunch $nPCM 266 }
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