Changeset 3093 for trunk/LMDZ.MARS/deftank

Timestamp:

Oct 18, 2023, 3:40:56 PM (16 months ago)

Author:

jbclement

Message:

PEM:
The optional file to define the wanted outputs in "diagpem.nc" is now "diagpem.def" (instead of "diagfi.def") + Some updates in the files of deftank.
JBC

Location:

trunk/LMDZ.MARS/deftank/pem

Files:

• README (modified) (1 diff)
• launch_pem.sh (modified) (2 diffs)
• modify_startfi_orbit.sh (modified) (1 diff)

trunk/LMDZ.MARS/deftank/pem/README

@@ -21 +21 @@
 
 # modify_startfi_orbit.sh:
-  Bash script file to modify orbital parameters in the file "startfi.nc" (obliquity, eccentricity, Ls perihelion and possibly initial Ls). They should be consistent with Laskar data in "obl_ecc_lsp.asc" to start the chained simulation.
+  Bash script file to modify orbital parameters in the file "startfi.nc" (obliquity, eccentricity, Ls perihelion and possibly initial Ls). They should be consistent with Laskar's data in "obl_ecc_lsp.asc" to start a chained simulation at a specific date.
 
 # concat_diagpem.sh:
-  Bash script file to concatenate along the variable 'Time' all the "diagfi.nc" files of the PEM into one NetCDF file. 'Time' is reindexed with the numbering of Martian years simulated by the PEM.
+  Bash script file to concatenate along the variable 'Time' all the "diagpem.nc" files of the PEM into one NetCDF file. 'Time' is re-indexed with the numbering of Martian years simulated by the PEM run.
 
 Note:
   To run the chained simulation, be careful to have:
       (i)   the xml files for XIOS. There should be "iodef.xml", "context_lmdz_physics.xml", "file_def_physics_mars.xml" and "field_def_physics_mars.xml" which can be found in the deftank folder. In "context_lmdz_physics.xml", the line for Xdiurnalave should be activated (enabled=".true.");
-      (ii)  the usual def files to run the GCM with "run.def" renamed in "run_GCM.def";
-      (iii) the "startfi.nc" file modified accordingly thanks to "modify_startfi_orbit.sh";
-      (iv)  "diagfi_PEM.def", "diagfi_GCM.def" and eventually other files...
+      (ii)  the usual def files to run the GCM. "run.def" should be renamed in "run_GCM.def";
+      (iii  the starting files ("startfi.nc" and "start.nc"). The former can be modified by "modify_startfi_orbit.sh";
+      (iv)  some optional files. For example, "diagfi.def" and "diagpem.def".

trunk/LMDZ.MARS/deftank/pem/launch_pem.sh

@@ -110 +110 @@
     #--- Loop to run GCM year by year
     cp run_GCM.def run.def
-    if [ -f "diagfi.def" ]; then
-        rm diagfi.def
-    fi
-    if [ -f "diagfi_GCM.def" ]; then
-        cp diagfi_GCM.def diagfi.def
-    fi
     for ((i = 1; i <= $nGCM; i++)); do
         echo "Run GCM $iGCM: call $i/$nGCM..."
@@ -160 +154 @@
     echo "Run PEM $iPEM..."
     cp run_PEM.def run.def
-    if [ -f "diagfi.def" ]; then
-        rm diagfi.def
-    fi
-    if [ -f "diagfi_PEM.def" ]; then
-        cp diagfi_PEM.def diagfi.def
-    fi
     mv startfi.nc startfi_evol.nc
     if [ -f "start.nc" ]; then

trunk/LMDZ.MARS/deftank/pem/modify_startfi_orbit.sh

@@ -4 +4 @@
 ######################################################################
 
-#Name of the file to be modified
+# Name of the file to be modified
 name_file="startfi.nc"