Ignore:
Timestamp:
Sep 21, 2023, 10:30:56 AM (21 months ago)
Author:
jbclement
Message:

Mars PEM:
Improvements of scripts to launch the chained simulations of GCM and PEM runs.
JBC

Location:
trunk/LMDZ.MARS/deftank/pem
Files:
3 edited

Legend:

Unmodified
Added
Removed

  • trunk/LMDZ.MARS/deftank/pem/exeGCM.sh

    r3038 r3046  
    11#!/bin/bash
    22#SBATCH --account=cin0391
    3 #SBATCH --job-name=GCMrun
     3#SBATCH --job-name=runGCM1
    44#SBATCH --constraint=GENOA
    55### GENOA nodes accommodate 96 cores
    … …  
    1212#SBATCH --threads-per-core=1
    1313###SBATCH --exclusive
    14 #SBATCH --output=gcm_run_%A.out
     14#SBATCH --output=run_gcm_%A.out
    1515#SBATCH --time=10:00:00
    1616

  • trunk/LMDZ.MARS/deftank/pem/launch_pem.sh

    r3038 r3046  
    55
    66echo "The launching script is starting!"
    7 echo "The output file is "loglaunch.txt"."
     7echo "The output file is \"loglaunch.txt\"."
    88if [ "$1" = "bg" ]; then
    99    date
    … …  
    4242address=`whoami`
    4343if [ ! -f "exeGCM.sh" ]; then
    44     echo "Error: file "exeGCM.sh" does not exist in $dir!"
    45     exit 0
     44    echo "Error: file \"exeGCM.sh\" does not exist in $dir!"
     45    exit 1
    4646fi
    4747if [ ! -f "run_PEM.def" ]; then
    48     echo "Error: file "run_PEM.def" does not exist in $dir!"
    49     exit 0
     48    echo "Error: file \"run_PEM.def\" does not exist in $dir!"
     49    exit 1
    5050fi
    5151if [ ! -f "run_GCM.def" ]; then
    52     echo "Error: file "run_GCM.def" does not exist in $dir!"
    53     exit 0
     52    echo "Error: file \"run_GCM.def\" does not exist in $dir!"
     53    exit 1
    5454fi
    5555if [ ! -f "diagfi_PEM.def" ]; then
    56     echo "Error: file "diagfi_PEM.def" does not exist in $dir!"
    57     exit 0
     56    echo "Error: file \"diagfi_PEM.def\" does not exist in $dir!"
     57    exit 1
    5858fi
    5959if [ ! -f "diagfi_GCM.def" ]; then
    60     echo "Error: file "diagfi_GCM.def" does not exist in $dir!"
    61     exit 0
     60    echo "Error: file \"diagfi_GCM.def\" does not exist in $dir!"
     61    exit 1
    6262fi
    6363if [ ! -f "context_lmdz_physics.xml" ]; then
    64     echo "Error: file "context_lmdz_physics.xml" does not exist in $dir!"
    65     exit 0
     64    echo "Error: file \"context_lmdz_physics.xml\" does not exist in $dir!"
     65    exit 1
    6666fi
    6767if [ ! -f "field_def_physics_mars.xml" ]; then
    68     echo "Error: file "field_def_physics_mars.xml" does not exist in $dir!"
    69     exit 0
     68    echo "Error: file \"field_def_physics_mars.xml\" does not exist in $dir!"
     69    exit 1
    7070fi
    7171if [ ! -f "file_def_physics_mars.xml" ]; then
    72     echo "Error: file "file_def_physics_mars.xml" does not exist in $dir!"
    73     exit 0
     72    echo "Error: file \"file_def_physics_mars.xml\" does not exist in $dir!"
     73    exit 1
    7474fi
    7575if [ ! -f "iodef.xml" ]; then
    76     echo "Error: file "iodef.xml" does not exist in $dir!"
    77     exit 0
     76    echo "Error: file \"iodef.xml\" does not exist in $dir!"
     77    exit 1
    7878fi
    7979if [ ! -d "out_GCM" ]; then
    … …  
    117117    #--- Loop to run GCM year by year
    118118    cp run_GCM.def run.def
    119     cp diagfi_GCM.def diagfi.def
     119    rm diagfi.def
     120    if [ ! -f "diagfi_GCM.def" ]; then
     121        cp diagfi_GCM.def diagfi.def
     122    fi
    120123    for ((i = 1; i <= $nGCM; i++)); do
    121124        echo "Run GCM $iGCM: call $i/$nGCM..."
     125        sed -i "s/#SBATCH --job-name=runGCM.*/#SBATCH --job-name=runGCM${iGCM}/" exeGCM.sh
    122126        sed -i "s/out_runGCM[0-9]\+/out_runGCM${iGCM}/" exeGCM.sh
    123127        sbatch -W exeGCM.sh
    124128        if [ ! -f "restartfi.nc" ]; then # Check if run ended abnormally
    125129            echo "Error: the run GCM $iGCM has crashed!"
    126             exit 0
     130            exit 1
    127131        fi
    128132        # Copy data files and prepare the next run
    … …  
    164168    echo "Run PEM $iPEM..."
    165169    cp run_PEM.def run.def
    166     cp diagfi_PEM.def diagfi.def
     170    rm diagfi.def
     171    if [ ! -f "diagfi_PEM.def" ]; then
     172        cp diagfi_PEM.def diagfi.def
     173    fi
    167174    mv startfi.nc startfi_evol.nc
    168175    ./$exePEM > out_runPEM${iPEM} 2>&1
    169176    if [ ! -f "restartfi_evol.nc" ]; then # Check if run ended abnormally
    170177        echo "Error: the run PEM $iPEM has crashed!"
    171         exit 0
     178        exit 1
    172179    fi
    173180    # Copy data files and prepare the next run
    … …  
    176183    cp restartfi_evol.nc starts/startfi_postPEM${iPEM}.nc
    177184    mv restartfi_evol.nc startfi.nc
     185    ./modify_startfi_iniLs.sh
    178186    if [ -f "restart_evol.nc" ]; then
    179187        cp restart_evol.nc starts/restart${iGCM}.nc

  • trunk/LMDZ.MARS/deftank/pem/modify_startfi_orbit.sh

    r3038 r3046  
    5454mv $name_file.temp $name_file
    5555
    56 echo "In $name_file:"
     56echo "In \"$name_file\":"
    5757echo "New obliquit     = $new_obl"
    5858echo "New eccentricity = $new_ecc -> new periheli = $periheli"
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