- Timestamp:
- Jun 17, 2011, 10:49:17 AM (13 years ago)
- Location:
- trunk/LMDZ.MARS
- Files:
-
- 10 edited
-
README (modified) (1 diff)
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libf/aeronomars/inichim_newstart.F (modified) (4 diffs)
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libf/dyn3d/lect_start_archive.F (modified) (2 diffs)
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libf/dyn3d/newstart.F (modified) (24 diffs)
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libf/phymars/datareadnc.F (modified) (1 diff)
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libf/phymars/initracer.F (modified) (3 diffs)
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libf/phymars/iniwrite.F (modified) (1 diff)
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libf/phymars/physdem1.F (modified) (1 diff)
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libf/phymars/physiq.F (modified) (3 diffs)
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makegcm_ifort (modified) (3 diffs)
Legend:
- Unmodified
- Added
- Removed
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trunk/LMDZ.MARS/README
r148 r164 664 664 Modified phymars/dimradmars.h , added directory phymars/scatterers 665 665 with script make_scatterers , and adapted makegcm* scripts. 666 667 == 17/06/2011 == AC 668 ================================================ 669 ======== IMPLEMENTATION OF THERMALS ============ 670 ================================================ 671 The main goal of this revision is to start including the thermals into the model 672 for development purposes. Users should not use the thermals yet, as 673 several major configuration changes still need to be done. 674 675 This version includes : 676 - updraft and downdraft parametrizations 677 - velocity in the thermal, including drag 678 - plume height analysis 679 - closure equation 680 - updraft transport of heat, tracers and momentum 681 - downdraft transport of heat 682 683 This model should not be used without upcoming developments, namely : 684 - downdraft transport of tracers and momentum 685 - updraft & downdraft transport of q2 (tke) 686 - revision of vdif_kc to compute q2 for non-stratified cases 687 688 Thermals could also include in a later revision : 689 - momentum loss during transport (horizontal drag) 690 691 Compilation of the thermals has been successfully tested on ifort, gfortran and pgf90 692 693 ================================================ 694 ================================================ 695 696 M libf/phymars/callkeys.h 697 M libf/phymars/inifis.F 698 699 Added new control flags to call the thermals : 700 - calltherm (false by default) <- to call thermals 701 - outptherm (false by default) <- to output thermal-related diagnostics (for dev purposes) 702 ================================================ 703 M libf/phymars/vdifc.F 704 ^------> added a temporary output for thermal-related diagnostics 705 M libf/phymars/testphys1d.F 706 ^------> added treatment for a initialization from a profile of neutral gas (ar) 707 -> will be transformed in a decaying tracer for thermal diagnostics 708 M libf/phymars/physiq.F 709 ^------> added a section to call the thermals 710 -> changed the call to convadj 711 -> added thermal-related outputs for diagnostics 712 M libf/phymars/convadj.F 713 ^------> takes now into account the height of thermals to execute convective adjustment 714 => note : convective adjustment needs to be activated when using thermals, in case of a 715 second instable layer above the thermals 716 ================================================ 717 A libf/phymars/calltherm_interface.F90 718 ^------> Interface between physiq.F and the thermals 719 A libf/phymars/calltherm_mars.F90 720 ^------> Routine running the sub-timestep of the thermals 721 A libf/phymars/thermcell_main_mars.F90 722 ^------> Main thermals routine specific to Martian physics 723 A libf/phymars/thermcell_dqupdown.F90 724 ^------> Thermals subroutine computing transport of quantities by updrafts and downdrafts 725 A libf/phymars/thermcell.F90 726 ^------> Module including parameters from the Earth to Mars importation. Will disappear in future dev 727 ================================================ 728 ================================================ 729 730 == 17/06/2011 == EM 731 >>> Updates and corrections (to enable compiling/running in debug mode with 732 ifort) 733 - removed option "-free-form" from makegcm_ifort and set mod_loc_dir="." 734 so that module files (produced in local directory by ifort) 735 are moved to LIBO 736 - updated initracer.F, physdem1.F, physiq.F, inichim_newstart.F 737 to avoid referencing out-of-bound array indexes (even if unused) 738 - cosmetic updates on inwrite.F, datareadnc.F 739 - updated newstart.F to initialize and use 'datadir' when looking for files 740 - corrected bug on interpolation of sub-surface temperatures in 741 lect_start_archive.F -
trunk/LMDZ.MARS/libf/aeronomars/inichim_newstart.F
r38 r164 120 120 write(*,*) 'initracer: error expected dustbin=2' 121 121 else 122 noms(1)='dust_mass' ! dust mass mixing ratio 123 noms(2)='dust_number' ! dust number mixing ratio 122 ! noms(1)='dust_mass' ! dust mass mixing ratio 123 ! noms(2)='dust_number' ! dust number mixing ratio 124 ! same as above, but avoid explict possible out-of-bounds on array 125 noms(1)='dust_mass' ! dust mass mixing ratio 126 do iq=2,2 127 noms(iq)='dust_number' ! dust number mixing ratio 128 enddo 124 129 endif 125 130 endif … … 129 134 noms(nqmx)='h2o_vap' 130 135 mmol(nqmx)=18. 131 noms(nqmx-1)='h2o_ice' 132 mmol(nqmx-1)=18. 136 ! noms(nqmx-1)='h2o_ice' 137 ! mmol(nqmx-1)=18. 138 !"loop" to avoid potential out-of-bounds in array 139 do iq=nqmx-1,nqmx-1 140 noms(iq)='h2o_ice' 141 mmol(iq)=18. 142 enddo 133 143 endif 134 144 ! 3. Chemistry … … 164 174 write(*,*)'inichim_newstart: moving surface water ice to index ' 165 175 & ,nqmx-1 166 qsurf(1:ngridmx,nqmx-1)=qsurf(1:ngridmx,nqmx) 176 ! "loop" to avoid potential out-of-bounds on arrays 177 do iq=nqmx-1,nqmx-1 178 qsurf(1:ngridmx,iq)=qsurf(1:ngridmx,iq+1) 179 enddo 167 180 qsurf(1:ngridmx,nqmx)=0 168 181 endif … … 395 408 ! as in the old days, water vapour is last and water ice, 396 409 ! if present, is just before water vapour 397 nqchem(1)=igcm_co2 398 nqchem(2)=igcm_co 399 nqchem(3)=igcm_o 400 nqchem(4)=igcm_o1d 401 nqchem(5)=igcm_o2 402 nqchem(6)=igcm_o3 403 nqchem(7)=igcm_h 404 nqchem(8)=igcm_h2 405 nqchem(9)=igcm_oh 406 nqchem(10)=igcm_ho2 407 nqchem(11)=igcm_h2o2 408 nqchem(12)=igcm_n2 409 nqchem(13)=igcm_ar 410 nqchem(14)=igcm_h2o_ice 411 nqchem(15)=igcm_h2o_vap 410 do iq=1,15 ! loop so as to avoid out-of-bounds on array 411 if (iq==1) nqchem(i)=igcm_co2 412 if (iq==2) nqchem(i)=igcm_co 413 if (iq==3) nqchem(i)=igcm_o 414 if (iq==4) nqchem(i)=igcm_o1d 415 if (iq==5) nqchem(i)=igcm_o2 416 if (iq==6) nqchem(i)=igcm_o3 417 if (iq==7) nqchem(i)=igcm_h 418 if (iq==8) nqchem(i)=igcm_h2 419 if (iq==9) nqchem(i)=igcm_oh 420 if (iq==10) nqchem(i)=igcm_ho2 421 if (iq==11) nqchem(i)=igcm_h2o2 422 if (iq==12) nqchem(i)=igcm_n2 423 if (iq==13) nqchem(i)=igcm_ar 424 if (iq==14) nqchem(i)=igcm_h2o_ice 425 if (iq==15) nqchem(i)=igcm_h2o_vap 426 enddo 412 427 413 428 ! Load in chemistry data for initialization: -
trunk/LMDZ.MARS/libf/dyn3d/lect_start_archive.F
r146 r164 1136 1136 allocate(oldval(nsoilold+1)) 1137 1137 allocate(newval(nsoilmx)) 1138 do i=1,i mold+11139 do j=1,j mold+11138 do i=1,iip1 1139 do j=1,jjp1 1140 1140 ! copy values 1141 1141 oldval(1)=tsurfold(i,j) … … 1168 1168 oldgrid(1)=0. ! ground 1169 1169 oldgrid(2:nsoilold+1)=mlayerold(1:nsoilold) 1170 do i=1,i mold+11171 do j=1,j mold+11170 do i=1,iip1 1171 do j=1,jjp1 1172 1172 ! copy values 1173 1173 oldval(1)=tsurfold(i,j) -
trunk/LMDZ.MARS/libf/dyn3d/newstart.F
r38 r164 14 14 c 15 15 c======================================================================= 16 17 ! to use 'getin' 18 USE ioipsl_getincom 16 19 17 20 implicit none … … 40 43 #include"advtrac.h" 41 44 #include"tracer.h" 45 #include "datafile.h" 42 46 c======================================================================= 43 47 c Declarations … … 50 54 c et autres: 51 55 c---------- 52 INTEGER lnblnk53 EXTERNAL lnblnk54 56 55 57 c Variables pour les lectures NetCDF des fichiers "start_archive" … … 358 360 relief="mola" 359 361 c enddo 362 363 ! before using datareadnc, "datafile" must be set (normaly done in inifis) 364 datafile="/u/forget/WWW/datagcm/datafile" ! default value 365 call getin("datadir",datafile) ! in case user specified another path 360 366 361 367 CALL datareadnc(relief,phis,alb,surfith,zmeaS,zstdS,zsigS,zgamS, … … 499 505 500 506 write(*,*) 501 write(*,*) modif(1:lnblnk(modif)) , ' : '507 write(*,*) trim(modif) , ' : ' 502 508 503 509 c 'flat : no topography ("aquaplanet")' 504 510 c ------------------------------------- 505 if ( modif(1:lnblnk(modif)) .eq. 'flat') then511 if (trim(modif) .eq. 'flat') then 506 512 c set topo to zero 507 513 CALL initial0(ip1jmp1,z_reel) … … 537 543 c bilball : albedo, inertie thermique uniforme 538 544 c -------------------------------------------- 539 else if ( modif(1:lnblnk(modif)) .eq. 'bilball') then545 else if (trim(modif) .eq. 'bilball') then 540 546 write(*,*) 'constante albedo and iner.therm:' 541 547 write(*,*) 'New value for albedo (ex: 0.25) ?' … … 564 570 c coldspole : sous-sol de la calotte sud toujours froid 565 571 c ----------------------------------------------------- 566 else if ( modif(1:lnblnk(modif)) .eq. 'coldspole') then572 else if (trim(modif) .eq. 'coldspole') then 567 573 write(*,*)'new value for the subsurface temperature', 568 574 & ' beneath the permanent southern polar cap ? (eg: 141 K)' … … 615 621 c ptot : Modification of the total pressure: ice + current atmosphere 616 622 c ------------------------------------------------------------------- 617 else if ( modif(1:lnblnk(modif)) .eq. 'ptot') then623 else if (trim(modif) .eq. 'ptot') then 618 624 619 625 c calcul de la pression totale glace + atm actuelle … … 699 705 c q=0 : set tracers to zero 700 706 c ------------------------- 701 else if ( modif(1:lnblnk(modif)) .eq. 'q=0') then707 else if (trim(modif) .eq. 'q=0') then 702 708 c mise a 0 des q (traceurs) 703 709 write(*,*) 'Tracers set to 0 (1.E-30 in fact)' … … 721 727 c q=x : initialise tracer manually 722 728 c -------------------------------- 723 else if ( modif(1:lnblnk(modif)) .eq. 'q=x') then729 else if (trim(modif) .eq. 'q=x') then 724 730 write(*,*) 'Which tracer do you want to modify ?' 725 731 do iq=1,nqmx … … 747 753 c ini_q : Initialize tracers for chemistry 748 754 c ----------------------------------------------- 749 else if ( modif(1:lnblnk(modif)) .eq. 'ini_q') then755 else if (trim(modif) .eq. 'ini_q') then 750 756 c For more than 32 layers, possible to initiate thermosphere only 751 757 thermo=0 … … 779 785 c ini_q-H2O : as above exept for the water vapour tracer 780 786 c ------------------------------------------------------ 781 else if ( modif(1:lnblnk(modif)) .eq. 'ini_q-H2O') then787 else if (trim(modif) .eq. 'ini_q-H2O') then 782 788 ! for more than 32 layers, possible to initiate thermosphere only 783 789 thermo=0 … … 812 818 c ini_q-iceH2O : as above exept for ice et H2O 813 819 c ----------------------------------------------- 814 else if ( modif(1:lnblnk(modif)) .eq. 'ini_q-iceH2O') then820 else if (trim(modif) .eq. 'ini_q-iceH2O') then 815 821 c For more than 32 layers, possible to initiate thermosphere only 816 822 thermo=0 … … 846 852 c wetstart : wet atmosphere with a north to south gradient 847 853 c -------------------------------------------------------- 848 else if ( modif(1:lnblnk(modif)) .eq. 'wetstart') then854 else if (trim(modif) .eq. 'wetstart') then 849 855 ! check that there is indeed a water vapor tracer 850 856 if (igcm_h2o_vap.eq.0) then … … 867 873 c noglacier : remove tropical water ice (to initialize high res sim) 868 874 c -------------------------------------------------- 869 else if ( modif(1:lnblnk(modif)) .eq. 'noglacier') then875 else if (trim(modif) .eq. 'noglacier') then 870 876 do ig=1,ngridmx 871 877 j=(ig-2)/iim +2 … … 880 886 c watercapn : H20 ice on permanent northern cap 881 887 c -------------------------------------------------- 882 else if ( modif(1:lnblnk(modif)) .eq. 'watercapn') then888 else if (trim(modif) .eq. 'watercapn') then 883 889 do ig=1,ngridmx 884 890 j=(ig-2)/iim +2 … … 895 901 c watercaps : H20 ice on permanent southern cap 896 902 c ------------------------------------------------- 897 else if ( modif(1:lnblnk(modif)) .eq. 'watercaps') then903 else if (trim(modif) .eq. 'watercaps') then 898 904 do ig=1,ngridmx 899 905 j=(ig-2)/iim +2 … … 910 916 c isotherm : Isothermal temperatures and no winds 911 917 c ------------------------------------------------ 912 else if ( modif(1:lnblnk(modif)) .eq. 'isotherm') then918 else if (trim(modif) .eq. 'isotherm') then 913 919 914 920 write(*,*)'Isothermal temperature of the atmosphere, … … 933 939 c co2ice=0 : remove CO2 polar ice caps' 934 940 c ------------------------------------------------ 935 else if ( modif(1:lnblnk(modif)) .eq. 'co2ice=0') then941 else if (trim(modif) .eq. 'co2ice=0') then 936 942 do ig=1,ngridmx 937 943 co2ice(ig)=0 … … 942 948 ! ---------------------------------------------------------------------- 943 949 944 else if ( modif(1:lnblnk(modif)).eq.'therm_ini_s') then950 else if (trim(modif).eq.'therm_ini_s') then 945 951 ! write(*,*)"surfithfi(1):",surfithfi(1) 946 952 do isoil=1,nsoilmx … … 965 971 ! ------------------------------------------------------------ 966 972 967 else if ( modif(1:lnblnk(modif)).eq.'subsoilice_n') then973 else if (trim(modif).eq.'subsoilice_n') then 968 974 969 975 write(*,*)'From which latitude (in deg.), up to the north pole, … … 1078 1084 ! ------------------------------------------------------------ 1079 1085 1080 else if ( modif(1:lnblnk(modif)).eq.'subsoilice_s') then1086 else if (trim(modif).eq.'subsoilice_s') then 1081 1087 1082 1088 write(*,*)'From which latitude (in deg.), down to the south pol … … 1179 1185 c 'mons_ice' : use MONS data to build subsurface ice table 1180 1186 c -------------------------------------------------------- 1181 else if ( modif(1:lnblnk(modif)).eq.'mons_ice') then1187 else if (trim(modif).eq.'mons_ice') then 1182 1188 1183 1189 ! 1. Load MONS data … … 1285 1291 else 1286 1292 write(*,*) ' Unknown (misspelled?) option!!!' 1287 end if ! of if ( modif(1:lnblnk(modif)) .eq. '...') elseif ...1293 end if ! of if (trim(modif) .eq. '...') elseif ... 1288 1294 1289 1295 enddo ! of do ! infinite loop on liste of changes -
trunk/LMDZ.MARS/libf/phymars/datareadnc.F
r146 r164 123 123 write(*,*)'1) You can set this path in the callphys.def file:' 124 124 write(*,*)' datadir=/path/to/the/datafiles' 125 write(*,*)'2) If necessary surface.nc (and other datafiles)' 125 write(*,*)' OR specify the path to use in callphys.def, as:' 126 write(*,*)' datadir=/path/to/the/directory' 127 write(*,*)'2) If necessary, surface.nc (and other datafiles)' 126 128 write(*,*)' can be obtained online on:' 127 129 write(*,*)' http://www.lmd.jussieu.fr/~forget/datagcm/datafile' -
trunk/LMDZ.MARS/libf/phymars/initracer.F
r91 r164 111 111 write(*,*) 'initracer: error expected dustbin=2' 112 112 else 113 noms(1)='dust_mass' ! dust mass mixing ratio 114 noms(2)='dust_number' ! dust number mixing ratio 113 ! noms(1)='dust_mass' ! dust mass mixing ratio 114 ! noms(2)='dust_number' ! dust number mixing ratio 115 ! same as above, but avoid explict possible out-of-bounds on array 116 noms(1)='dust_mass' ! dust mass mixing ratio 117 do iq=2,2 118 noms(iq)='dust_number' ! dust number mixing ratio 119 enddo 115 120 endif 116 121 endif … … 120 125 noms(nqmx)='h2o_vap' 121 126 mmol(nqmx)=18. 122 noms(nqmx-1)='h2o_ice' 123 mmol(nqmx-1)=18. 127 ! noms(nqmx-1)='h2o_ice' 128 ! mmol(nqmx-1)=18. 129 !"loop" to avoid potential out-of-bounds in array 130 do iq=nqmx-1,nqmx-1 131 noms(iq)='h2o_ice' 132 mmol(iq)=18. 133 enddo 124 134 endif 125 135 ! 3. Chemistry … … 157 167 if (oldnames.and.water) then 158 168 write(*,*)'initracer: moving surface water ice to index ',nqmx-1 159 qsurf(1:ngridmx,nqmx-1)=qsurf(1:ngridmx,nqmx) 169 ! "loop" to avoid potential out-of-bounds on arrays 170 do iq=nqmx-1,nqmx-1 171 qsurf(1:ngridmx,iq)=qsurf(1:ngridmx,iq+1) 172 enddo 160 173 qsurf(1:ngridmx,nqmx)=0 161 174 endif -
trunk/LMDZ.MARS/libf/phymars/iniwrite.F
r38 r164 36 36 c ---------- 37 37 38 integer nid ! NetCDF file ID39 INTEGER*4 idayref ! date (initial date for this run)40 REALphis(ip1jmp1) ! surface geopotential38 integer,intent(in) :: nid ! NetCDF file ID 39 INTEGER*4,intent(in) :: idayref ! date (initial date for this run) 40 real,intent(in) :: phis(ip1jmp1) ! surface geopotential 41 41 42 42 c Local: -
trunk/LMDZ.MARS/libf/phymars/physdem1.F
r38 r164 565 565 ! back to qsurf(nqmx) 566 566 IF (water) THEN 567 !"loop" to avoid potential out-of-bounds on arrays 567 568 write(*,*)'physdem1: moving surface water ice to index ',nqmx 568 qsurf(1:ngridmx,nqmx)=qsurf(1:ngridmx,nqmx-1) 569 qsurf(1:ngridmx,nqmx-1)=0 569 do iq=nqmx,nqmx 570 qsurf(1:ngridmx,iq)=qsurf(1:ngridmx,iq-1) 571 qsurf(1:ngridmx,iq-1)=0 572 enddo 570 573 ENDIF 571 574 endif ! of if (count.eq.nqmx) -
trunk/LMDZ.MARS/libf/phymars/physiq.F
r161 r164 1308 1308 c call WRITEDIAGFI(ngrid,"emis","Surface emissivity","w.m-1",2, 1309 1309 c & emis) 1310 call WRITEDIAGFI(ngrid,"pplay","Pressure","Pa",3,zplay)1311 call WRITEDIAGFI(ngrid,"pplev","Pressure","Pa",3,zplev)1310 ! call WRITEDIAGFI(ngrid,"pplay","Pressure","Pa",3,zplay) 1311 ! call WRITEDIAGFI(ngrid,"pplev","Pressure","Pa",3,zplev) 1312 1312 call WRITEDIAGFI(ngrid,"tsurf","Surface temperature","K",2, 1313 1313 & tsurf) 1314 1314 call WRITEDIAGFI(ngrid,"ps","surface pressure","Pa",2,ps) 1315 ccall WRITEDIAGFI(ngrid,"co2ice","co2 ice thickness","kg.m-2",2,1316 c& co2ice)1315 call WRITEDIAGFI(ngrid,"co2ice","co2 ice thickness","kg.m-2",2, 1316 & co2ice) 1317 1317 c call WRITEDIAGFI(ngrid,"temp7","temperature in layer 7", 1318 1318 c & "K",2,zt(1,7)) … … 1331 1331 call WRITEDIAGFI(ngrid,"rho","density","none",3,rho) 1332 1332 c call WRITEDIAGFI(ngrid,"q2","q2","kg.m-3",3,q2) 1333 call WRITEDIAGFI(ngrid,'Teta','T potentielle','K',3,zh)1333 ! call WRITEDIAGFI(ngrid,'Teta','T potentielle','K',3,zh) 1334 1334 c call WRITEDIAGFI(ngrid,"pressure","Pressure","Pa",3,pplay) 1335 1335 c call WRITEDIAGFI(ngrid,"ssurf","Surface stress","N.m-2",2, … … 1536 1536 & zq(ig,l,1)*(pplev(ig,l)-pplev(ig,l+1))/g 1537 1537 if (nqmx .gt. 1) then 1538 iq=2 ! to avoid out-of-bounds spotting by picky compilers 1539 ! when gcm is compiled with only one tracer 1538 1540 dummycol(ig)=dummycol(ig)+ 1539 & zq(ig,l, 2)*(pplev(ig,l)-pplev(ig,l+1))/g1541 & zq(ig,l,iq)*(pplev(ig,l)-pplev(ig,l+1))/g 1540 1542 endif 1541 1543 enddo -
trunk/LMDZ.MARS/makegcm_ifort
r148 r164 22 22 # default LMDGCM to where makegcm script is located: 23 23 #setenv LMDGCM "`dirname $0`" 24 setenv LMDGCM /san/home/millour/Planeto/test_mars_141/LMDZ.MARS 24 25 # You may set LIBOGCM to something else; otherwise we default to: 25 #setenv LIBOGCM $LMDGCM/libo26 setenv LIBOGCM $LMDGCM/libo 26 27 ## NetCDF Libraries: what follows is OK on GNOME 27 #setenv NCDFLIB /usr/local/lib28 #setenv NCDFINC /usr/local/include28 setenv NCDFLIB /usr/local/lib 29 setenv NCDFINC /usr/local/include 29 30 #### 30 31 … … 180 181 set optimtru90=" -O2 -ip -mkl=sequential -align common " 181 182 # set opt_link=" -Mfree -lpgf90 -lpgftnrtl -lpghpf -lpghpf2 -L$NCDFLIB -lnetcdf -Bstatic " 182 set mod_loc_dir=$LIBOGCM 183 # set mod_loc_dir=$LIBOGCM 184 # ifort puts mod files in local directory 185 set mod_loc_dir="." 183 186 set mod_suffix=mod 184 187 else if $NEC then … … 709 712 set optim="$optim -I${libo}" 710 713 set optim90="$optim90 -I${libo}" 711 set optimtru90="$optimtru90 - ffree-form -I${libo}"714 set optimtru90="$optimtru90 -I${libo}" 712 715 # Ehouarn: remove set mod_loc_dir def below; mod_loc_dir=$localdir (set above) 713 716 # set mod_loc_dir=$libo
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