#!/usr/bin/env python ### A. Spiga -- LMD -- 30/06/2011 to 10/07/2011 ### Thanks to A. Colaitis for the parser trick #################################### #################################### ### The main program to plot vectors def winds (namefile,\ nvert,\ proj=None,\ back=None,\ target=None, stride=3,\ numplot=2,\ var=None,\ colorb="def",\ winds=True,\ addchar=None,\ interv=[0,1],\ vmin=None,\ vmax=None,\ tile=False,\ zoom=None,\ display=True,\ itstep=None,\ hole=False,\ save="gui",\ anomaly=False,\ var2=None,\ ndiv=10,\ first=1,\ mult=1.,\ zetitle="fill"): #################################################################################################################### ### Colorbars http://www.scipy.org/Cookbook/Matplotlib/Show_colormaps?action=AttachFile&do=get&target=colormaps3.png ################################# ### Load librairies and functions from netCDF4 import Dataset from myplot import getcoord2d,define_proj,makeplotres,simplinterv,vectorfield,ptitle,latinterv,getproj,wrfinterv,dumpbdy,\ fmtvar,definecolorvec,defcolorb,getprefix,putpoints,calculate_bounds,errormess,definesubplot,\ zoomset,getcoorddef,getwinddef,whatkindfile,reducefield,bounds,getstralt,getfield,smooth,nolow,\ getname,localtime,polarinterv from mymath import deg,max,min,mean from matplotlib.pyplot import contour,contourf, subplot, figure, rcParams, savefig, colorbar, pcolor, show from matplotlib.cm import get_cmap import numpy as np from numpy.core.defchararray import find ###################### ### Load NETCDF object nc = Dataset(namefile) ################################## ### Initial checks and definitions typefile = whatkindfile(nc) ## TYPEFILE if var not in nc.variables: var = False ## VAR if winds: ## WINDS [uchar,vchar,metwind] = getwinddef(nc) if uchar == 'not found': winds = False if not var and not winds: errormess("please set at least winds or var",printvar=nc.variables) [lon2d,lat2d] = getcoorddef(nc) ## COORDINATES, could be moved below if proj == None: proj = getproj(nc) ## PROJECTION ########################## ### Define plot boundaries ### todo: possible areas in latinterv in argument (ex: "Far_South_Pole") if proj in ["npstere","spstere"]: [wlon,wlat] = polarinterv(lon2d,lat2d) elif proj in ["lcc","laea"]: [wlon,wlat] = wrfinterv(lon2d,lat2d) else: [wlon,wlat] = simplinterv(lon2d,lat2d) if zoom: [wlon,wlat] = zoomset(wlon,wlat,zoom) ######################################### ### Name for title and graphics save file basename = getname(var=var,winds=winds,anomaly=anomaly) basename = basename + getstralt(nc,nvert) ## can be moved elsewhere for a more generic routine ################################## ### Open a figure and set subplots fig = figure() subv,subh = definesubplot( numplot, fig ) ################################# ### Time loop for plotting device found_lct = False nplot = 1 itime = first error = False if itstep is None and numplot > 0: itstep = int(24./numplot) elif numplot <= 0: itstep = 1 while error is False: ### Which local time ? ltst = localtime ( interv[0]+itime*interv[1], 0.5*(wlon[0]+wlon[1]) ) ### General plot settings #print itime, int(ltst), numplot, nplot if numplot >= 1: if nplot > numplot: break if numplot > 1: if typefile not in ['geo']: subplot(subv,subh,nplot) found_lct = True ### If only one local time is requested (numplot < 0) elif numplot <= 0: if int(ltst) + numplot != 0: itime += 1 if found_lct is True: break ## because it means LT was found at previous iteration else: continue ## continue to iterate to find the correct LT else: found_lct = True ### Map projection m = define_proj(proj,wlon,wlat,back=back) x, y = m(lon2d, lat2d) #### Contour plot if var2: what_I_contour, error = reducefield( getfield(nc,var2), d4=itime, d3=nvert ) if not error: if typefile in ['mesoapi','meso']: what_I_contour = dumpbdy(what_I_contour,6) zevmin, zevmax = calculate_bounds(what_I_contour) zelevels = np.linspace(zevmin,zevmax,num=20) if var2 == 'HGT': zelevels = np.arange(-10000.,30000.,2000.) contour( x, y, what_I_contour, zelevels, colors='k', linewidths = 0.33 ) #colors='w' )# , alpha=0.5) else: errormess("There is an error in reducing field !") #### Shaded plot if var: what_I_plot, error = reducefield( getfield(nc,var), d4=itime, d3=nvert ) what_I_plot = what_I_plot*mult if not error: fvar = var ### if anomaly: what_I_plot = 100. * ((what_I_plot / smooth(what_I_plot,12)) - 1.) fvar = 'anomaly' #if mult != 1: # fvar = str(mult) + "*" + var ### if typefile in ['mesoapi','meso']: what_I_plot = dumpbdy(what_I_plot,6) zevmin, zevmax = calculate_bounds(what_I_plot,vmin=vmin,vmax=vmax) if colorb in ["def","nobar"]: palette = get_cmap(name=defcolorb(fvar)) else: palette = get_cmap(name=colorb) if not tile: if not hole: what_I_plot = bounds(what_I_plot,zevmin,zevmax) #zelevels = np.linspace(zevmin*(1. + 1.e-7),zevmax*(1. - 1.e-7)) #,num=20) zelevels = np.linspace(zevmin,zevmax) contourf( x, y, what_I_plot, zelevels, cmap = palette ) else: if hole: what_I_plot = nolow(what_I_plot) pcolor( x, y, what_I_plot, cmap = palette, \ vmin=zevmin, vmax=zevmax ) if colorb != 'nobar' and var != 'HGT': colorbar(fraction=0.05,pad=0.03,format=fmtvar(fvar),\ ticks=np.linspace(zevmin,zevmax,ndiv+1),\ extend='neither',spacing='proportional') # both min max neither else: errormess("There is an error in reducing field !") ### Vector plot if winds: vecx, error = reducefield( getfield(nc,uchar), d4=itime, d3=nvert ) vecy, error = reducefield( getfield(nc,vchar), d4=itime, d3=nvert ) if not error: if typefile in ['mesoapi','meso']: [vecx,vecy] = [dumpbdy(vecx,6,stag=uchar), dumpbdy(vecy,6,stag=vchar)] key = True elif typefile in ['gcm']: key = False if metwind: [vecx,vecy] = m.rotate_vector(vecx, vecy, lon2d, lat2d) if var == False: colorvec = definecolorvec(back) else: colorvec = definecolorvec(colorb) vectorfield(vecx, vecy,\ x, y, stride=stride, csmooth=2,\ #scale=15., factor=300., color=colorvec, key=key) scale=20., factor=250., color=colorvec, key=key) #200. ## or csmooth=stride ### Next subplot plottitle = basename if typefile in ['mesoapi','meso']: if addchar: plottitle = plottitle + addchar + "_LT"+str(ltst) else: plottitle = plottitle + "_LT"+str(ltst) if mult != 1: plottitle = str(mult) + "*" + plottitle if zetitle != "fill": plottitle = zetitle ptitle( plottitle ) itime += itstep nplot += 1 ########################################################################## ### Save the figure in a file in the data folder or an user-defined folder if typefile in ['meso','mesoapi']: prefix = getprefix(nc) elif typefile in ['gcm']: prefix = 'LMD_GCM_' else: prefix = '' ### zeplot = prefix + basename if addchar: zeplot = zeplot + addchar if numplot <= 0: zeplot = zeplot + "_LT"+str(abs(numplot)) ### if not target: zeplot = namefile[0:find(namefile,'wrfout')] + zeplot else: zeplot = target + "/" + zeplot ### if found_lct: pad_inches_value = 0.35 if save == 'png': if display: makeplotres(zeplot,res=100.,pad_inches_value=pad_inches_value) #,erase=True) ## a miniature makeplotres(zeplot,res=200.,pad_inches_value=pad_inches_value,disp=False) elif save in ['eps','svg','pdf']: makeplotres(zeplot, pad_inches_value=pad_inches_value,disp=False,ext=save) elif save == 'gui': show() else: print "save mode not supported. using gui instead." show() else: print "Local time not found" ############### ### Now the end return zeplot ############################## ### A specific stuff for below def adjust_length (tab, zelen): from numpy import ones if tab is None: outtab = ones(zelen) * -999999 else: if zelen != len(tab): print "not enough or too much values... setting same values all variables" outtab = ones(zelen) * tab[0] else: outtab = tab return outtab ########################################################################################### ########################################################################################### ### What is below relate to running the file as a command line executable (very convenient) if __name__ == "__main__": import sys from optparse import OptionParser ### to be replaced by argparse from api_wrapper import api_onelevel from netCDF4 import Dataset from myplot import getlschar from os import system ############################# ### Get options and variables parser = OptionParser() parser.add_option('-f', '--file', action='append',dest='namefile', type="string", default=None, help='[NEEDED] name of WRF file (append)') parser.add_option('-l', '--level', action='store',dest='nvert', type="float", default=0, help='level (def=0)(-i 2: p,mbar)(-i 3,4: z,km)') parser.add_option('-p', '--proj', action='store',dest='proj', type="string", default=None, help='projection') parser.add_option('-b', '--back', action='store',dest='back', type="string", default=None, help='background image (def: None)') parser.add_option('-t', '--target', action='store',dest='target', type="string", default=None, help='destination folder') parser.add_option('-s', '--stride', action='store',dest='stride', type="int", default=3, help='stride vectors (def=3)') parser.add_option('-v', '--var', action='append',dest='var', type="string", default=None, help='variable color-shaded (append)') parser.add_option('-n', '--num', action='store',dest='numplot', type="int", default=2, help='plot number (def=2)(<0: plot LT -*numplot*)') parser.add_option('-i', '--interp', action='store',dest='interp', type="int", default=None, help='interpolation (2: p, 3: z-amr, 4:z-als)') parser.add_option('-c', '--color', action='store',dest='colorb', type="string", default="def", help='change colormap (nobar: no colorbar)') parser.add_option('-x', '--no-vect',action='store_false',dest='winds', default=True, help='no wind vectors') parser.add_option('-m', '--min', action='append',dest='vmin', type="float", default=None, help='bounding minimum value (append)') parser.add_option('-M', '--max', action='append',dest='vmax', type="float", default=None, help='bounding maximum value (append)') parser.add_option('-T', '--tiled', action='store_true',dest='tile', default=False, help='draw a tiled plot (no blank zone)') parser.add_option('-z', '--zoom', action='store',dest='zoom', type="float", default=None, help='zoom factor in %') parser.add_option('-N', '--no-api', action='store_true',dest='nocall', default=False, help='do not recreate api file') parser.add_option('-d', '--display',action='store_false',dest='display', default=True, help='do not pop up created images') parser.add_option('-e', '--itstep', action='store',dest='itstep', type="int", default=None, help='stride time (def=4)') parser.add_option('-H', '--hole', action='store_true',dest='hole', default=False, help='holes above max and below min') parser.add_option('-S', '--save', action='store',dest='save', type="string", default="gui", help='save mode (png,eps,svg,pdf or gui)(def=gui)') parser.add_option('-a', '--anomaly',action='store_true',dest='anomaly', default=False, help='compute and plot relative anomaly in %') parser.add_option('-w', '--with', action='store',dest='var2', type="string", default=None, help='variable contoured') parser.add_option('--div', action='store',dest='ndiv', type="int", default=10, help='number of divisions in colorbar (def: 10)') parser.add_option('-F', '--first', action='store',dest='first', type="int", default=1, help='first subscript to plot (def: 1)') parser.add_option('--mult', action='store',dest='mult', type="float", default=1., help='a multiplicative factor to plotted field') parser.add_option('--title', action='store',dest='zetitle', type="string", default="fill",help='customize the whole title') #parser.add_option('-V', action='store', dest='comb', type="float", default=None, help='a defined combination of variables') (opt,args) = parser.parse_args() if opt.namefile is None: print "I want to eat one file at least ! Use winds.py -f name_of_my_file. Or type winds.py -h" exit() if opt.var is None and opt.anomaly is True: print "Cannot ask to compute anomaly if no variable is set" exit() print "Options:", opt listvar = '' if opt.var is None: zerange = [-999999] else: zelen = len(opt.var) zerange = range(zelen) #if zelen == 1: listvar = opt.var[0] + ',' #else : for jjj in zerange: listvar += opt.var[jjj] + ',' listvar = listvar[0:len(listvar)-1] vmintab = adjust_length (opt.vmin, zelen) vmaxtab = adjust_length (opt.vmax, zelen) for i in range(len(opt.namefile)): zefile = opt.namefile[i] print zefile zelevel = opt.nvert stralt = None [lschar,zehour,zehourin] = getlschar ( zefile ) ## getlschar from wrfout (or simply return "" if another file) ##################################################### ### Call Fortran routines for vertical interpolations if opt.interp is not None: if opt.nvert is 0 and opt.interp is 4: zelevel = 0.010 ### winds or no winds if opt.winds : zefields = 'uvmet' else : zefields = '' ### var or no var #if opt.var is None : pass if zefields == '' : zefields = listvar else : zefields = zefields + "," + listvar if opt.var2 is not None : zefields = zefields + "," + opt.var2 print zefields zefile = api_onelevel ( path_to_input = '', \ input_name = zefile, \ fields = zefields, \ interp_method = opt.interp, \ onelevel = zelevel, \ nocall = opt.nocall ) print zefile zelevel = 0 ## so that zelevel could play again the role of nvert if opt.var is None: zerange = [-999999] else: zerange = range(zelen) for jjj in zerange: if jjj == -999999: argvar = None argvmin = None argvmax = None else: argvar = opt.var[jjj] if vmintab[jjj] != -999999: argvmin = vmintab[jjj] else: argvmin = None if vmaxtab[jjj] != -999999: argvmax = vmaxtab[jjj] else: argvmax = None ############# ### Main call name = winds (zefile,int(zelevel),\ proj=opt.proj,back=opt.back,target=opt.target,stride=opt.stride,var=argvar,\ numplot=opt.numplot,colorb=opt.colorb,winds=opt.winds,\ addchar=lschar,interv=[zehour,zehourin],vmin=argvmin,vmax=argvmax,\ tile=opt.tile,zoom=opt.zoom,display=opt.display,\ itstep=opt.itstep,hole=opt.hole,save=opt.save,\ anomaly=opt.anomaly,var2=opt.var2,ndiv=opt.ndiv,first=opt.first,\ mult=opt.mult,zetitle=opt.zetitle) print 'Done: '+name system("rm -f to_be_erased") ######################################################### ### Generate a .sh file with the used command saved in it command = "" for arg in sys.argv: command = command + arg + ' ' f = open(name+'.sh', 'w') f.write(command)