| 1 | #################################################### |
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| 2 | ### A Python Class for the Mars Climate Database ### |
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| 3 | ### ---------------------------------------------### |
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| 4 | ### Aymeric SPIGA 17-21/04/2012 ### |
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| 5 | ### ---------------------------------------------### |
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| 6 | ### (see mcdtest.py for examples of use) ### |
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| 7 | #################################################### |
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| 8 | |
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| 9 | import numpy as np |
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| 10 | import matplotlib.pyplot as mpl |
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| 11 | import frozen_myplot as myplot |
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| 12 | |
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| 13 | |
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| 14 | class mcd(): |
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| 15 | |
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| 16 | def __repr__(self): |
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| 17 | # print out a help string when help is invoked on the object |
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| 18 | whatprint = 'MCD object. \"help(mcd)\" for more information\n' |
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| 19 | return whatprint |
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| 20 | |
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| 21 | ######################## |
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| 22 | ### Default settings ### |
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| 23 | ######################## |
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| 24 | |
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| 25 | def __init__(self): |
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| 26 | # default settings |
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| 27 | ## 0. general stuff |
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| 28 | self.name = "MCD v4.3" |
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| 29 | self.ack = "Mars Climate Database (c) LMD/OU/IAA/ESA/CNES" |
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| 30 | #self.dset = '/home/aymeric/Science/MCD_v4.3/data/' |
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| 31 | self.dset = '/home/marshttp/MCD_v4.3/data/' |
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| 32 | ## 1. spatio-temporal coordinates |
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| 33 | self.lat = 0. |
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| 34 | self.lats = None |
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| 35 | self.late = None |
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| 36 | self.lon = 0. |
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| 37 | self.lons = None |
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| 38 | self.lone = None |
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| 39 | self.loct = 0. |
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| 40 | self.locts = None |
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| 41 | self.locte = None |
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| 42 | self.xdate = 0. # see datekey |
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| 43 | self.xdates = None |
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| 44 | self.xdatee = None |
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| 45 | self.xz = 10. # see zkey |
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| 46 | self.xzs = None |
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| 47 | self.xze = None |
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| 48 | ## 1bis. related settings |
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| 49 | self.zkey = 3 # specify that xz is the altitude above surface (m) |
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| 50 | # zkey : <integer> type of vertical coordinate xz |
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| 51 | # 1 = radius from centre of planet (m) |
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| 52 | # 2 = height above areoid (m) (MOLA zero datum) |
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| 53 | # 3 = height above surface (m) |
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| 54 | # 4 = pressure level (Pa) |
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| 55 | # 5 = altitude above mean Mars Radius(=3396000m) (m) |
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| 56 | self.datekey = 1 # 0 = "Earth time": xdate is given in Julian days (localtime must be set to zero) |
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| 57 | # 1 = "Mars date": xdate is the value of Ls |
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| 58 | ## 2. climatological options |
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| 59 | self.dust = 2 #our best guess MY24 scenario, with solar average conditions |
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| 60 | self.hrkey = 1 #set high resolution mode on (hrkey=0 to set high resolution off) |
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| 61 | ## 3. additional settings for advanced use |
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| 62 | self.extvarkey = 1 #extra output variables (1: yes, 0: no) |
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| 63 | self.perturkey = 0 #integer perturkey ! perturbation type (0: none) |
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| 64 | self.seedin = 1 #random number generator seed (unused if perturkey=0) |
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| 65 | self.gwlength = 0. #gravity Wave wavelength (unused if perturkey=0) |
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| 66 | ## outputs. just to define attributes. |
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| 67 | ## --> in update |
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| 68 | self.pres = None ; self.dens = None ; self.temp = None ; self.zonwind = None ; self.merwind = None ; self.meanvar = None ; self.extvar = None |
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| 69 | self.seedout = None ; self.ierr = None |
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| 70 | ## --> in prepare |
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| 71 | self.xcoord = None ; self.ycoord = None |
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| 72 | self.prestab = None ; self.denstab = None ; self.temptab = None |
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| 73 | self.zonwindtab = None ; self.merwindtab = None ; self.meanvartab = None ; self.extvartab = None |
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| 74 | ## plot stuff |
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| 75 | self.xlabel = None ; self.ylabel = None ; self.title = "" |
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| 76 | self.vertplot = False |
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| 77 | self.fmt = "%.2e" |
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| 78 | self.colorm = "jet" |
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| 79 | self.fixedlt = False |
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| 80 | self.zonmean = False |
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| 81 | self.min2d = None |
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| 82 | self.max2d = None |
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| 83 | self.dpi = 80. |
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| 84 | self.islog = False |
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| 85 | |
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| 86 | def toversion5(self): |
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| 87 | self.name = "MCD v5.1" |
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| 88 | self.dset = '/home/marshttp/MCD_v5.1/data/' |
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| 89 | self.extvarkey = np.ones(100) |
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| 90 | |
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| 91 | def viking1(self): self.name = "Viking 1 site. MCD v4.3 output" ; self.lat = 22.48 ; self.lon = -49.97 ; self.xdate = 97. |
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| 92 | def viking2(self): self.name = "Viking 2 site. MCD v4.3 output" ; self.lat = 47.97 ; self.lon = -225.74 ; self.xdate = 117.6 |
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| 93 | |
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| 94 | def getdustlabel(self): |
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| 95 | if self.dust == 1: |
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| 96 | self.dustlabel = "MY24 minimum solar scenario" |
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| 97 | if "v5" in self.name: self.dustlabel = "climatology average solar scenario" |
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| 98 | elif self.dust == 2: |
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| 99 | self.dustlabel = "MY24 average solar scenario" |
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| 100 | if "v5" in self.name: self.dustlabel = "climatology minimum solar scenario" |
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| 101 | elif self.dust == 3: |
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| 102 | self.dustlabel = "MY24 maximum solar scenario" |
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| 103 | if "v5" in self.name: self.dustlabel = "climatology maximum solar scenario" |
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| 104 | elif self.dust == 4: self.dustlabel = "dust storm minimum solar scenario" |
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| 105 | elif self.dust == 5: self.dustlabel = "dust storm average solar scenario" |
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| 106 | elif self.dust == 6: self.dustlabel = "dust storm maximum solar scenario" |
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| 107 | elif self.dust == 7: self.dustlabel = "warm scenario (dusty, maximum solar)" |
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| 108 | elif self.dust == 8: self.dustlabel = "cold scenario (low dust, minimum solar)" |
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| 109 | |
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| 110 | def gettitle(self,oneline=False): |
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| 111 | self.getdustlabel() |
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| 112 | self.title = self.name + " with " + self.dustlabel + "." |
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| 113 | if self.datekey == 1: self.title = self.title + " Ls " + str(self.xdate) + "deg." |
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| 114 | elif self.datekey == 0: self.title = self.title + " JD " + str(self.xdate) + "." |
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| 115 | if not oneline: self.title = self.title + "\n" |
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| 116 | if self.lats is None: self.title = self.title + " Latitude " + str(self.lat) + "N" |
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| 117 | if self.zonmean and self.lats is not None and self.xzs is not None: |
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| 118 | self.title = self.title + "Zonal mean over all longitudes." |
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| 119 | elif self.lons is None: |
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| 120 | self.title = self.title + " Longitude " + str(self.lon) + "E" |
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| 121 | if self.xzs is None: |
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| 122 | self.vertunits() |
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| 123 | self.title = self.title + " Altitude " + str(self.xz) + " " + self.vunits |
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| 124 | if self.locts is None: |
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| 125 | self.title = self.title + " Local time " + str(self.loct) + "h" |
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| 126 | if not self.fixedlt: self.title = self.title + " (at longitude 0) " |
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| 127 | |
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| 128 | def getextvarlab(self,num): |
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| 129 | whichfield = { \ |
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| 130 | 91: "Pressure (Pa)", \ |
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| 131 | 92: "Density (kg/m3)", \ |
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| 132 | 93: "Temperature (K)", \ |
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| 133 | 94: "W-E wind component (m/s)", \ |
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| 134 | 95: "S-N wind component (m/s)", \ |
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| 135 | 96: "Horizontal wind speed (m/s)", \ |
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| 136 | 1: "Radial distance from planet center (m)",\ |
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| 137 | 2: "Altitude above areoid (Mars geoid) (m)",\ |
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| 138 | 3: "Altitude above local surface (m)",\ |
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| 139 | 4: "orographic height (m) (surf alt above areoid)",\ |
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| 140 | 5: "Ls, solar longitude of Mars (deg)",\ |
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| 141 | 6: "LST local true solar time (hrs)",\ |
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| 142 | 7: "Universal solar time (LST at lon=0) (hrs)",\ |
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| 143 | 8: "Air heat capacity Cp (J kg-1 K-1)",\ |
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| 144 | 9: "gamma=Cp/Cv Ratio of specific heats",\ |
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| 145 | 10: "density RMS day to day variations (kg/m^3)",\ |
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| 146 | 11: "[not defined]",\ |
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| 147 | 12: "[not defined]",\ |
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| 148 | 13: "scale height H(p) (m)",\ |
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| 149 | 14: "GCM orography (m)",\ |
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| 150 | 15: "surface temperature (K)",\ |
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| 151 | 16: "daily max mean surface temperature (K)",\ |
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| 152 | 17: "daily min mean surface temperature (K)",\ |
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| 153 | 18: "surf. temperature RMS day to day variations (K)",\ |
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| 154 | 19: "surface pressure (Pa)",\ |
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| 155 | 20: "GCM surface pressure (Pa)",\ |
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| 156 | 21: "atmospheric pressure RMS day to day variations (Pa)",\ |
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| 157 | 22: "surface pressure RMS day to day variations (Pa)",\ |
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| 158 | 23: "temperature RMS day to day variations (K)",\ |
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| 159 | 24: "zonal wind RMS day to day variations (m/s)",\ |
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| 160 | 25: "meridional wind RMS day to day variations (m/s)",\ |
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| 161 | 26: "vertical wind component (m/s) >0 when downwards!",\ |
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| 162 | 27: "vertical wind RMS day to day variations (m/s)",\ |
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| 163 | 28: "small scale perturbation (gravity wave) (kg/m^3)",\ |
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| 164 | 29: "q2: turbulent kinetic energy (m2/s2)",\ |
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| 165 | 30: "[not defined]",\ |
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| 166 | 31: "thermal IR flux to surface (W/m2)",\ |
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| 167 | 32: "solar flux to surface (W/m2)",\ |
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| 168 | 33: "thermal IR flux to space (W/m2)",\ |
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| 169 | 34: "solar flux reflected to space (W/m2)",\ |
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| 170 | 35: "surface CO2 ice layer (kg/m2)",\ |
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| 171 | 36: "DOD: Dust column visible optical depth",\ |
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| 172 | 37: "Dust mass mixing ratio (kg/kg)",\ |
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| 173 | 38: "DOD RMS day to day variations",\ |
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| 174 | 39: "DOD total standard deviation over season",\ |
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| 175 | 40: "Water vapor column (kg/m2)",\ |
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| 176 | 41: "Water vapor vol. mixing ratio (mol/mol)",\ |
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| 177 | 42: "Water ice column (kg/m2)",\ |
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| 178 | 43: "Water ice mixing ratio (mol/mol)",\ |
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| 179 | 44: "O3 ozone vol. mixing ratio (mol/mol)",\ |
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| 180 | 45: "[CO2] vol. mixing ratio (mol/mol)",\ |
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| 181 | 46: "[O] vol. mixing ratio (mol/mol)",\ |
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| 182 | 47: "[N2] vol. mixing ratio (mol/mol)",\ |
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| 183 | 48: "[CO] vol. mixing ratio (mol/mol)",\ |
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| 184 | 49: "R: Molecular gas constant (J K-1 kg-1)",\ |
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| 185 | 50: "Air viscosity estimation (N s m-2)" |
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| 186 | } |
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| 187 | ### MCD version 5 new variables. AS 12/2012. |
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| 188 | if "v5" in self.name: |
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| 189 | whichfield[30] = whichfield[34] |
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| 190 | whichfield[34] = "surface H2O ice layer (kg/m2, 0.5: perennial)" |
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| 191 | whichfield[29] = "Surface roughness length z0 (m)" |
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| 192 | whichfield[37] = "DOD RMS day to day variations" |
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| 193 | whichfield[38] = "Dust mass mixing ratio (kg/kg)" |
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| 194 | whichfield[39] = "Dust effective radius (m)" |
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| 195 | whichfield[44] = whichfield[43] |
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| 196 | whichfield[43] = whichfield[42] |
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| 197 | whichfield[42] = whichfield[41] |
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| 198 | whichfield[41] = whichfield[40] |
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| 199 | whichfield[40] = "Dust deposition on flat surface (kg m-2 s-1)" |
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| 200 | whichfield[45] = "Water ice effective radius (m)" |
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| 201 | whichfield[46] = "Convective PBL height (m)" |
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| 202 | whichfield[47] = "Max. upward convective wind within the PBL (m/s)" |
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| 203 | whichfield[48] = "Max. downward convective wind within the PBL (m/s)" |
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| 204 | whichfield[49] = "Convective vertical wind variance at level z (m2/s2)" |
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| 205 | whichfield[50] = "Convective eddy vertical heat flux at level z (m/s/K)" |
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| 206 | whichfield[51] = "Surface wind stress (Kg/m/s2)" |
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| 207 | whichfield[52] = "Surface sensible heat flux (W/m2) (<0 when flux from surf to atm.)" |
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| 208 | whichfield[53] = "R: Molecular gas constant (J K-1 kg-1)" |
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| 209 | whichfield[54] = "Air viscosity estimation (N s m-2)" |
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| 210 | whichfield[55] = "not used (set to zero)" |
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| 211 | whichfield[56] = "not used (set to zero)" |
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| 212 | whichfield[57] = "[CO2] vol. mixing ratio (mol/mol)" |
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| 213 | whichfield[58] = "[N2] vol. mixing ratio (mol/mol)" |
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| 214 | whichfield[59] = "[Ar] vol. mixing ratio (mol/mol)" |
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| 215 | whichfield[60] = "[CO] vol. mixing ratio (mol/mol)" |
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| 216 | whichfield[61] = "[O] vol. mixing ratio (mol/mol)" |
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| 217 | whichfield[62] = "[O2] vol. mixing ratio (mol/mol)" |
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| 218 | whichfield[63] = "[O3] vol. mixing ratio (mol/mol)" |
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| 219 | whichfield[64] = "[H] vol. mixing ratio (mol/mol)" |
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| 220 | whichfield[65] = "[H2] vol. mixing ratio (mol/mol)" |
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| 221 | whichfield[66] = "electron number density (cm-3)" |
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| 222 | whichfield[67] = "CO2 column (kg/m2)" |
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| 223 | whichfield[68] = "N2 column (kg/m2)" |
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| 224 | whichfield[69] = "Ar column (kg/m2)" |
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| 225 | whichfield[70] = "CO column (kg/m2)" |
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| 226 | whichfield[71] = "O column (kg/m2)" |
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| 227 | whichfield[72] = "O2 column (kg/m2)" |
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| 228 | whichfield[73] = "O3 column (kg/m2)" |
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| 229 | whichfield[74] = "H column (kg/m2)" |
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| 230 | whichfield[75] = "H2 column (kg/m2)" |
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| 231 | whichfield[76] = "Total Electronic Content (TEC) (m-2)" |
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| 232 | if num not in whichfield: myplot.errormess("Incorrect subscript in extvar.") |
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| 233 | dastuff = whichfield[num] |
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| 234 | if "(K)" in dastuff: self.fmt="%.0f" |
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| 235 | elif "effective radius" in dastuff: self.fmt="%.2e" |
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| 236 | elif "(Pa)" in dastuff: self.fmt="%.2e" |
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| 237 | elif "(W/m2)" in dastuff: self.fmt="%.0f" |
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| 238 | elif "(m/s)" in dastuff: self.fmt="%.1f" |
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| 239 | elif "(m)" in dastuff: self.fmt="%.0f" |
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| 240 | else: self.fmt="%.2e" |
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| 241 | return dastuff |
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| 242 | |
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| 243 | def convertlab(self,num): |
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| 244 | ## a conversion from text inquiries to extvar numbers. to be completed. |
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| 245 | if num == "p": num = 91 |
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| 246 | elif num == "rho": num = 92 |
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| 247 | elif num == "t": num = 93 |
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| 248 | elif num == "u": num = 94 |
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| 249 | elif num == "v": num = 95 |
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| 250 | elif num == "wind": num = 96 |
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| 251 | elif num == "tsurf": num = 15 |
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| 252 | elif num == "topo": num = 4 |
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| 253 | elif num == "h": num = 13 |
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| 254 | elif num == "ps": num = 19 |
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| 255 | elif num == "tau": num = 36 |
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| 256 | elif num == "mtot": |
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| 257 | if "v5" in self.name: num = 41 |
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| 258 | else: num = 40 |
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| 259 | elif num == "icetot": |
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| 260 | if "v5" in self.name: num = 43 |
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| 261 | else: num = 42 |
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| 262 | elif num == "h2ovap": |
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| 263 | if "v5" in self.name: num = 42 |
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| 264 | else: num = 41 |
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| 265 | elif num == "h2oice": |
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| 266 | if "v5" in self.name: num = 44 |
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| 267 | else: num = 43 |
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| 268 | elif num == "cp": num = 8 |
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| 269 | elif num == "rho_ddv": num = 10 |
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| 270 | elif num == "ps_ddv": num = 22 |
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| 271 | elif num == "p_ddv": num = 21 |
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| 272 | elif num == "t_ddv": num = 23 |
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| 273 | elif num == "w": num = 26 |
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| 274 | elif num == "tsurfmx": num = 16 |
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| 275 | elif num == "tsurfmn": num = 17 |
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| 276 | elif num == "lwdown": num = 31 |
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| 277 | elif num == "swdown": num = 32 |
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| 278 | elif num == "lwup": num = 33 |
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| 279 | elif num == "swup": |
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| 280 | if "v5" in self.name: num = 30 |
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| 281 | else: num = 34 |
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| 282 | elif num == "tau": num = 36 |
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| 283 | elif num == "tau_ddv": |
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| 284 | if "v5" in self.name: num = 37 |
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| 285 | else: num = 38 |
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| 286 | elif num == "qdust": |
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| 287 | if "v5" in self.name: num = 38 |
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| 288 | else: num = 37 |
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| 289 | elif num == "co2": |
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| 290 | if "v5" in self.name: num = 57 |
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| 291 | else: num = 45 |
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| 292 | elif num == "o3": |
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| 293 | if "v5" in self.name: num = 63 |
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| 294 | else: num = 44 |
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| 295 | elif num == "o": |
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| 296 | if "v5" in self.name: num = 61 |
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| 297 | else: num = 46 |
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| 298 | elif num == "co": |
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| 299 | if "v5" in self.name: num = 60 |
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| 300 | else: num = 48 |
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| 301 | elif num == "visc": |
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| 302 | if "v5" in self.name: num = 54 |
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| 303 | else: num = 50 |
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| 304 | elif num == "co2ice": num = 35 |
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| 305 | elif num == "n2": |
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| 306 | if "v5" in self.name: num = 58 |
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| 307 | else: num = 47 |
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| 308 | elif num == "n2col": |
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| 309 | if "v5" in self.name: num = 68 |
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| 310 | else: num = 11 # an undefined variable to avoid misleading output |
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| 311 | elif num == "rdust": |
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| 312 | if "v5" in self.name: num = 39 |
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| 313 | else: num = 11 # an undefined variable to avoid misleading output |
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| 314 | elif num == "sdust": |
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| 315 | if "v5" in self.name: num = 40 |
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| 316 | else: num = 11 # an undefined variable to avoid misleading output |
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| 317 | elif num == "pbl": |
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| 318 | if "v5" in self.name: num = 46 |
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| 319 | else: num = 11 # an undefined variable to avoid misleading output |
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| 320 | elif num == "updraft": |
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| 321 | if "v5" in self.name: num = 47 |
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| 322 | else: num = 11 # an undefined variable to avoid misleading output |
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| 323 | elif num == "downdraft": |
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| 324 | if "v5" in self.name: num = 48 |
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| 325 | else: num = 11 # an undefined variable to avoid misleading output |
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| 326 | elif num == "pblwvar": |
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| 327 | if "v5" in self.name: num = 49 |
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| 328 | else: num = 11 # an undefined variable to avoid misleading output |
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| 329 | elif num == "pblhvar": |
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| 330 | if "v5" in self.name: num = 50 |
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| 331 | else: num = 11 # an undefined variable to avoid misleading output |
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| 332 | elif num == "stress": |
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| 333 | if "v5" in self.name: num = 51 |
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| 334 | else: num = 11 # an undefined variable to avoid misleading output |
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| 335 | elif num == "ar": |
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| 336 | if "v5" in self.name: num = 59 |
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| 337 | else: num = 11 # an undefined variable to avoid misleading output |
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| 338 | elif num == "o2": |
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| 339 | if "v5" in self.name: num = 62 |
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| 340 | else: num = 11 # an undefined variable to avoid misleading output |
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| 341 | elif num == "co2col": |
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| 342 | if "v5" in self.name: num = 67 |
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| 343 | else: num = 11 # an undefined variable to avoid misleading output |
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| 344 | elif num == "arcol": |
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| 345 | if "v5" in self.name: num = 69 |
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| 346 | else: num = 11 # an undefined variable to avoid misleading output |
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| 347 | elif num == "cocol": |
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| 348 | if "v5" in self.name: num = 70 |
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| 349 | else: num = 11 # an undefined variable to avoid misleading output |
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| 350 | elif num == "o3col": |
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| 351 | if "v5" in self.name: num = 73 |
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| 352 | else: num = 11 # an undefined variable to avoid misleading output |
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| 353 | elif num == "hydro": |
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| 354 | if "v5" in self.name: num = 64 |
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| 355 | else: num = 11 # an undefined variable to avoid misleading output |
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| 356 | elif num == "hydro2": |
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| 357 | if "v5" in self.name: num = 65 |
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| 358 | else: num = 11 # an undefined variable to avoid misleading output |
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| 359 | elif num == "e": |
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| 360 | if "v5" in self.name: num = 66 |
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| 361 | else: num = 11 # an undefined variable to avoid misleading output |
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| 362 | elif num == "ecol": |
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| 363 | if "v5" in self.name: num = 76 |
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| 364 | else: num = 11 # an undefined variable to avoid misleading output |
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| 365 | elif num == "groundice": |
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| 366 | if "v5" in self.name: num = 34 |
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| 367 | else: num = 11 # an undefined variable to avoid misleading output |
|---|
| 368 | elif not isinstance(num, np.int): myplot.errormess("field reference not found.") |
|---|
| 369 | return num |
|---|
| 370 | |
|---|
| 371 | ################### |
|---|
| 372 | ### One request ### |
|---|
| 373 | ################### |
|---|
| 374 | |
|---|
| 375 | def update(self): |
|---|
| 376 | # retrieve fields from MCD (call_mcd). more info in fmcd.call_mcd.__doc__ |
|---|
| 377 | ## sanity first |
|---|
| 378 | self.loct = abs(self.loct)%24 |
|---|
| 379 | if self.locts is not None and self.locte is not None: |
|---|
| 380 | self.locts = abs(self.locts)%24 |
|---|
| 381 | self.locte = abs(self.locte)%24 |
|---|
| 382 | if self.locts == self.locte: self.locte = self.locts + 24 |
|---|
| 383 | ## now MCD request |
|---|
| 384 | if "v5" in self.name: from fmcd5 import call_mcd |
|---|
| 385 | else: from fmcd import call_mcd |
|---|
| 386 | (self.pres, self.dens, self.temp, self.zonwind, self.merwind, \ |
|---|
| 387 | self.meanvar, self.extvar, self.seedout, self.ierr) \ |
|---|
| 388 | = \ |
|---|
| 389 | call_mcd(self.zkey,self.xz,self.lon,self.lat,self.hrkey, \ |
|---|
| 390 | self.datekey,self.xdate,self.loct,self.dset,self.dust, \ |
|---|
| 391 | self.perturkey,self.seedin,self.gwlength,self.extvarkey ) |
|---|
| 392 | ## we use the end of extvar (unused) to store meanvar. this is convenient for getextvar(lab) |
|---|
| 393 | self.extvar[90] = self.pres ; self.extvar[91] = self.dens |
|---|
| 394 | self.extvar[92] = self.temp ; self.extvar[93] = self.zonwind ; self.extvar[94] = self.merwind |
|---|
| 395 | self.extvar[95] = np.sqrt(self.extvar[93]**2 + self.extvar[94]**2) # calculate wind modulus |
|---|
| 396 | ## treat missing values |
|---|
| 397 | if self.temp == -999: self.extvar[:] = np.NaN ; self.meanvar[:] = np.NaN |
|---|
| 398 | |
|---|
| 399 | def printset(self): |
|---|
| 400 | # print main settings |
|---|
| 401 | print "zkey",self.zkey,"xz",self.xz,"lon",self.lon,"lat",self.lat,"hrkey",self.hrkey, \ |
|---|
| 402 | "xdate",self.xdate,"loct",self.loct,"dust",self.dust |
|---|
| 403 | |
|---|
| 404 | def getnameset(self): |
|---|
| 405 | # set a name referring to settings [convenient for databases] |
|---|
| 406 | strlat = str(self.lat)+str(self.lats)+str(self.late) |
|---|
| 407 | strlon = str(self.lon)+str(self.lons)+str(self.lone) |
|---|
| 408 | strxz = str(self.xz)+str(self.xzs)+str(self.xze) |
|---|
| 409 | strloct = str(self.loct)+str(self.locts)+str(self.locte) |
|---|
| 410 | name = str(self.zkey)+strxz+strlon+strlat+str(self.hrkey)+str(self.datekey)+str(self.xdate)+strloct+str(self.dust) |
|---|
| 411 | if "v5" in self.name: name = "v5_" + name |
|---|
| 412 | return name |
|---|
| 413 | |
|---|
| 414 | def printcoord(self): |
|---|
| 415 | # print requested space-time coordinates |
|---|
| 416 | print "LAT",self.lat,"LON",self.lon,"LOCT",self.loct,"XDATE",self.xdate |
|---|
| 417 | |
|---|
| 418 | def printmeanvar(self): |
|---|
| 419 | # print mean MCD variables |
|---|
| 420 | print "Pressure = %5.3f pascals. " % (self.pres) |
|---|
| 421 | print "Density = %5.3f kilograms per cubic meter. " % (self.dens) |
|---|
| 422 | print "Temperature = %3.0f kelvins (%4.0f degrees celsius)." % (self.temp,self.temp-273.15) |
|---|
| 423 | print "Zonal wind = %5.3f meters per second." % (self.zonwind) |
|---|
| 424 | print "Meridional wind = %5.3f meters per second." % (self.merwind) |
|---|
| 425 | print "Total horizontal wind = %5.3f meters per second." % ( np.sqrt(self.zonwind**2 + self.merwind**2) ) |
|---|
| 426 | |
|---|
| 427 | def printextvar(self,num): |
|---|
| 428 | # print extra MCD variables |
|---|
| 429 | num = self.convertlab(num) |
|---|
| 430 | dastr = str(self.extvar[num-1]) |
|---|
| 431 | if dastr == "nan": print "!!!! There is a problem, probably a value is requested below the surface !!!!" |
|---|
| 432 | else: print self.getextvarlab(num) + " ..... " + dastr |
|---|
| 433 | |
|---|
| 434 | def printallextvar(self): |
|---|
| 435 | # print all extra MCD variables |
|---|
| 436 | if "v5" in self.name: limit=76 |
|---|
| 437 | else: limit=50 |
|---|
| 438 | for i in range(limit): self.printextvar(i+1) |
|---|
| 439 | |
|---|
| 440 | def htmlprinttabextvar(self,tabtodo): |
|---|
| 441 | self.fixedlt = True ## local time is real local time |
|---|
| 442 | self.gettitle() |
|---|
| 443 | print "<hr>" |
|---|
| 444 | print self.title |
|---|
| 445 | print "<hr>" |
|---|
| 446 | print "<ul>" |
|---|
| 447 | for i in range(len(tabtodo)): print "<li>" ; self.printextvar(tabtodo[i]) ; print "</li>" |
|---|
| 448 | print "</ul>" |
|---|
| 449 | print "<hr>" |
|---|
| 450 | print self.ack |
|---|
| 451 | print "<hr>" |
|---|
| 452 | #print "SETTINGS<br />" |
|---|
| 453 | #self.printcoord() |
|---|
| 454 | #self.printset() |
|---|
| 455 | |
|---|
| 456 | def printmcd(self): |
|---|
| 457 | # 1. call MCD 2. print settings 3. print mean vars |
|---|
| 458 | self.update() |
|---|
| 459 | self.printcoord() |
|---|
| 460 | print "-------------------------------------------" |
|---|
| 461 | self.printmeanvar() |
|---|
| 462 | |
|---|
| 463 | ######################## |
|---|
| 464 | ### Several requests ### |
|---|
| 465 | ######################## |
|---|
| 466 | |
|---|
| 467 | def prepare(self,ndx=None,ndy=None): |
|---|
| 468 | ### prepare I/O arrays for 1d slices |
|---|
| 469 | if ndx is None: print "No dimension in prepare. Exit. Set at least ndx." ; exit() |
|---|
| 470 | else: self.xcoord = np.ones(ndx) |
|---|
| 471 | if ndy is None: dashape = (ndx) ; dashapemean = (ndx,6) ; dashapeext = (ndx,101) ; self.ycoord = None |
|---|
| 472 | else: dashape = (ndx,ndy) ; dashapemean = (ndx,ndy,6) ; dashapeext = (ndx,ndy,101) ; self.ycoord = np.ones(ndy) |
|---|
| 473 | self.prestab = np.ones(dashape) ; self.denstab = np.ones(dashape) ; self.temptab = np.ones(dashape) |
|---|
| 474 | self.zonwindtab = np.ones(dashape) ; self.merwindtab = np.ones(dashape) |
|---|
| 475 | self.meanvartab = np.ones(dashapemean) ; self.extvartab = np.ones(dashapeext) |
|---|
| 476 | |
|---|
| 477 | def getextvar(self,num): |
|---|
| 478 | ### get a given var in extvartab |
|---|
| 479 | try: field=self.extvartab[:,:,num] |
|---|
| 480 | except: field=self.extvartab[:,num] |
|---|
| 481 | return field |
|---|
| 482 | |
|---|
| 483 | def definefield(self,choice): |
|---|
| 484 | ### for analysis or plot purposes, set field and field label from user-defined choice |
|---|
| 485 | choice = self.convertlab(choice) |
|---|
| 486 | field = self.getextvar(choice); fieldlab = self.getextvarlab(choice) |
|---|
| 487 | ## fix for possibly slightly negative tracers |
|---|
| 488 | if "(mol/mol)" in fieldlab or "(kg/kg)" in fieldlab or "(kg/m2)" in fieldlab or "(W/m2)" in fieldlab: |
|---|
| 489 | ind = np.where(field < 1.e-30) |
|---|
| 490 | if ind != -1: field[ind] = 0.e0 #1.e-30 ## 0 does not work everywhere. |
|---|
| 491 | return field,fieldlab |
|---|
| 492 | |
|---|
| 493 | def ininterv(self,dstart,dend,nd,start=None,end=None,yaxis=False,vertcoord=False): |
|---|
| 494 | ### user-defined start and end are used to create xcoord (or ycoord) vector |
|---|
| 495 | if start is not None and end is not None: first, second = self.correctbounds(start,end,vertcoord) |
|---|
| 496 | else: first, second = self.correctbounds(dstart,dend,vertcoord) |
|---|
| 497 | if self.zkey != 4 or not vertcoord: tabtab = np.linspace(first,second,nd) |
|---|
| 498 | else: tabtab = np.logspace(first,second,nd) |
|---|
| 499 | if not yaxis: self.xcoord = tabtab |
|---|
| 500 | else: self.ycoord = tabtab |
|---|
| 501 | |
|---|
| 502 | def correctbounds(self,start,end,vertcoord): |
|---|
| 503 | if self.zkey != 4 or not vertcoord: |
|---|
| 504 | # regular altitudes |
|---|
| 505 | if start > end: first = end ; second = start |
|---|
| 506 | else: first = start ; second = end |
|---|
| 507 | else: |
|---|
| 508 | # pressure: reversed avis |
|---|
| 509 | if start < end: first = np.log10(end) ; second = np.log10(start) |
|---|
| 510 | else: first = np.log10(start) ; second = np.log10(end) |
|---|
| 511 | return first, second |
|---|
| 512 | |
|---|
| 513 | def vertlabel(self): |
|---|
| 514 | if self.zkey == 1: self.xlabel = "radius from centre of planet (m)" |
|---|
| 515 | elif self.zkey == 2: self.xlabel = "height above areoid (m) (MOLA zero datum)" |
|---|
| 516 | elif self.zkey == 3: self.xlabel = "height above surface (m)" |
|---|
| 517 | elif self.zkey == 4: self.xlabel = "pressure level (Pa)" |
|---|
| 518 | elif self.zkey == 5: self.xlabel = "altitude above mean Mars Radius(=3396000m) (m)" |
|---|
| 519 | |
|---|
| 520 | def vertunits(self): |
|---|
| 521 | if self.zkey == 1: self.vunits = "m CP" |
|---|
| 522 | elif self.zkey == 2: self.vunits = "m AMR" |
|---|
| 523 | elif self.zkey == 3: self.vunits = "m ALS" |
|---|
| 524 | elif self.zkey == 4: self.vunits = "Pa" |
|---|
| 525 | elif self.zkey == 5: self.vunits = "m AMMRad" |
|---|
| 526 | |
|---|
| 527 | def vertaxis(self,number,yaxis=False): |
|---|
| 528 | if self.zkey == 2: self.ininterv(-5000.,100000.,number,start=self.xzs,end=self.xze,yaxis=yaxis,vertcoord=True) |
|---|
| 529 | elif self.zkey == 3: self.ininterv(0.,120000.,number,start=self.xzs,end=self.xze,yaxis=yaxis,vertcoord=True) |
|---|
| 530 | elif self.zkey == 5: self.ininterv(-5000.,100000.,number,start=self.xzs,end=self.xze,yaxis=yaxis,vertcoord=True) |
|---|
| 531 | elif self.zkey == 4: self.ininterv(1000.,0.001,number,start=self.xzs,end=self.xze,yaxis=yaxis,vertcoord=True) |
|---|
| 532 | elif self.zkey == 1: self.ininterv(3396000,3596000,number,start=self.xzs,end=self.xze,yaxis=yaxis,vertcoord=True) |
|---|
| 533 | |
|---|
| 534 | ################### |
|---|
| 535 | ### 1D analysis ### |
|---|
| 536 | ################### |
|---|
| 537 | |
|---|
| 538 | def put1d(self,i): |
|---|
| 539 | ## fill in subscript i in output arrays |
|---|
| 540 | ## (arrays must have been correctly defined through prepare) |
|---|
| 541 | if self.prestab is None: myplot.errormess("arrays must be prepared first through self.prepare") |
|---|
| 542 | self.prestab[i] = self.pres ; self.denstab[i] = self.dens ; self.temptab[i] = self.temp |
|---|
| 543 | self.zonwindtab[i] = self.zonwind ; self.merwindtab[i] = self.merwind |
|---|
| 544 | self.meanvartab[i,1:5] = self.meanvar[0:4] ## note: var numbering according to MCD manual is kept |
|---|
| 545 | self.extvartab[i,1:100] = self.extvar[0:99] ## note: var numbering according to MCD manual is kept |
|---|
| 546 | |
|---|
| 547 | def diurnal(self,nd=13): |
|---|
| 548 | ### retrieve a local time slice |
|---|
| 549 | self.fixedlt = True ## local time is real local time |
|---|
| 550 | save = self.loct |
|---|
| 551 | self.xlabel = "Local time (Martian hour)" |
|---|
| 552 | self.prepare(ndx=nd) ; self.ininterv(0.,24.,nd,start=self.locts,end=self.locte) |
|---|
| 553 | for i in range(nd): self.loct = self.xcoord[i] ; self.update() ; self.put1d(i) |
|---|
| 554 | self.loct = save |
|---|
| 555 | |
|---|
| 556 | def zonal(self,nd=37): |
|---|
| 557 | ### retrieve a longitude slice |
|---|
| 558 | save = self.lon |
|---|
| 559 | self.xlabel = "East longitude (degrees)" |
|---|
| 560 | self.prepare(ndx=nd) ; self.ininterv(-180.,180.,nd,start=self.lons,end=self.lone) |
|---|
| 561 | if not self.fixedlt: umst = self.loct |
|---|
| 562 | for i in range(nd): |
|---|
| 563 | self.lon = self.xcoord[i] |
|---|
| 564 | if not self.fixedlt: self.loct = (umst + self.lon/15.) % 24 |
|---|
| 565 | self.update() ; self.put1d(i) |
|---|
| 566 | self.lon = save |
|---|
| 567 | |
|---|
| 568 | def meridional(self,nd=19): |
|---|
| 569 | ### retrieve a latitude slice |
|---|
| 570 | self.fixedlt = True ## local time is real local time |
|---|
| 571 | save = self.lat |
|---|
| 572 | self.xlabel = "North latitude (degrees)" |
|---|
| 573 | self.prepare(ndx=nd) ; self.ininterv(-90.,90.,nd,start=self.lats,end=self.late) |
|---|
| 574 | for i in range(nd): self.lat = self.xcoord[i] ; self.update() ; self.put1d(i) |
|---|
| 575 | self.lat = save |
|---|
| 576 | |
|---|
| 577 | def profile(self,nd=20,tabperso=None): |
|---|
| 578 | ### retrieve an altitude slice (profile) |
|---|
| 579 | self.fixedlt = True ## local time is real local time |
|---|
| 580 | save = self.xz |
|---|
| 581 | self.vertlabel() |
|---|
| 582 | self.vertplot = True |
|---|
| 583 | if tabperso is not None: nd = len(tabperso) |
|---|
| 584 | correct = False |
|---|
| 585 | self.prepare(ndx=nd) ; self.vertaxis(nd) |
|---|
| 586 | if tabperso is not None: self.xcoord = tabperso |
|---|
| 587 | for i in range(nd): self.xz = self.xcoord[i] ; self.update() ; self.put1d(i) |
|---|
| 588 | self.xz = save |
|---|
| 589 | |
|---|
| 590 | def seasonal(self,nd=12): |
|---|
| 591 | ### retrieve a seasonal slice |
|---|
| 592 | save = self.xdate |
|---|
| 593 | self.xlabel = "Areocentric longitude (degrees)" |
|---|
| 594 | self.prepare(ndx=nd) ; self.ininterv(0.,360.,nd,start=self.xdates,end=self.xdatee) |
|---|
| 595 | for i in range(nd): self.xdate = self.xcoord[i] ; self.update() ; self.put1d(i) |
|---|
| 596 | self.xdate = save |
|---|
| 597 | |
|---|
| 598 | def getascii(self,tabtodo,filename="output.txt"): |
|---|
| 599 | ### print out values in an ascii file |
|---|
| 600 | if isinstance(tabtodo,np.str): tabtodo=[tabtodo] ## so that asking one element without [] is possible. |
|---|
| 601 | if isinstance(tabtodo,np.int): tabtodo=[tabtodo] ## so that asking one element without [] is possible. |
|---|
| 602 | asciifile = open(filename, "w") |
|---|
| 603 | for i in range(len(tabtodo)): |
|---|
| 604 | (field, fieldlab) = self.definefield(tabtodo[i]) |
|---|
| 605 | self.gettitle(oneline=True) |
|---|
| 606 | asciifile.write("### " + self.title + "\n") |
|---|
| 607 | asciifile.write("### " + self.ack + "\n") |
|---|
| 608 | asciifile.write("### Column 1 is " + self.xlabel + "\n") |
|---|
| 609 | asciifile.write("### Column 2 is " + fieldlab + "\n") |
|---|
| 610 | for ix in range(len(self.xcoord)): |
|---|
| 611 | asciifile.write("%15.5e%15.5e\n" % ( self.xcoord[ix], field[ix] ) ) |
|---|
| 612 | asciifile.close() |
|---|
| 613 | return |
|---|
| 614 | |
|---|
| 615 | def makeplot1d(self,choice): |
|---|
| 616 | ### one 1D plot is created for the user-defined variable in choice. |
|---|
| 617 | (field, fieldlab) = self.definefield(choice) |
|---|
| 618 | if not self.vertplot: absc = self.xcoord ; ordo = field ; ordolab = fieldlab ; absclab = self.xlabel |
|---|
| 619 | else: ordo = self.xcoord ; absc = field ; absclab = fieldlab ; ordolab = self.xlabel |
|---|
| 620 | mpl.plot(absc,ordo,'-bo') ; mpl.ylabel(ordolab) ; mpl.xlabel(absclab) #; mpl.xticks(query.xcoord) |
|---|
| 621 | # cases with log axis |
|---|
| 622 | if self.zkey == 4: mpl.semilogy() ; ax = mpl.gca() ; ax.set_ylim(ax.get_ylim()[::-1]) |
|---|
| 623 | if not self.vertplot and self.islog: mpl.semilogy() |
|---|
| 624 | if self.vertplot and self.islog: mpl.semilogx() |
|---|
| 625 | mpl.figtext(0.5, 0.01, self.ack, ha='center') |
|---|
| 626 | |
|---|
| 627 | def plot1d(self,tabtodo): |
|---|
| 628 | ### complete 1D figure with possible multiplots |
|---|
| 629 | if isinstance(tabtodo,np.str): tabtodo=[tabtodo] ## so that asking one element without [] is possible. |
|---|
| 630 | if isinstance(tabtodo,np.int): tabtodo=[tabtodo] ## so that asking one element without [] is possible. |
|---|
| 631 | fig = mpl.figure() ; subv,subh = myplot.definesubplot( len(tabtodo) , fig ) |
|---|
| 632 | for i in range(len(tabtodo)): mpl.subplot(subv,subh,i+1).grid(True, linestyle=':', color='grey') ; self.makeplot1d(tabtodo[i]) |
|---|
| 633 | |
|---|
| 634 | def htmlplot1d(self,tabtodo,figname="temp.png",title=""): |
|---|
| 635 | ### complete 1D figure with possible multiplots |
|---|
| 636 | ### added in 09/2012 for online MCD |
|---|
| 637 | ### see http://www.dalkescientific.com/writings/diary/archive/2005/04/23/matplotlib_without_gui.html |
|---|
| 638 | from matplotlib.figure import Figure |
|---|
| 639 | from matplotlib.backends.backend_agg import FigureCanvasAgg |
|---|
| 640 | if isinstance(tabtodo,np.str): tabtodo=[tabtodo] ## so that asking one element without [] is possible. |
|---|
| 641 | if isinstance(tabtodo,np.int): tabtodo=[tabtodo] ## so that asking one element without [] is possible. |
|---|
| 642 | |
|---|
| 643 | howmanyplots = len(tabtodo) |
|---|
| 644 | if howmanyplots == 1: fig = Figure(figsize=(16,8)) |
|---|
| 645 | elif howmanyplots == 2: fig = Figure(figsize=(8,8)) |
|---|
| 646 | elif howmanyplots == 3: fig = Figure(figsize=(8,16)) |
|---|
| 647 | elif howmanyplots == 4: fig = Figure(figsize=(16,8)) |
|---|
| 648 | |
|---|
| 649 | subv,subh = myplot.definesubplot( len(tabtodo) , fig ) |
|---|
| 650 | for i in range(len(tabtodo)): |
|---|
| 651 | yeah = fig.add_subplot(subv,subh,i+1) #.grid(True, linestyle=':', color='grey') |
|---|
| 652 | choice = tabtodo[i] |
|---|
| 653 | (field, fieldlab) = self.definefield(choice) |
|---|
| 654 | |
|---|
| 655 | # in log plots we do not show the negative values |
|---|
| 656 | if self.islog: field[np.where(field <= 0.e0)] = np.nan |
|---|
| 657 | |
|---|
| 658 | if not self.vertplot: absc = self.xcoord ; ordo = field ; ordolab = fieldlab ; absclab = self.xlabel |
|---|
| 659 | else: ordo = self.xcoord ; absc = field ; absclab = fieldlab ; ordolab = self.xlabel |
|---|
| 660 | |
|---|
| 661 | yeah.plot(absc,ordo,'-bo') #; mpl.xticks(query.xcoord) |
|---|
| 662 | ax = fig.gca() ; ax.set_ylabel(ordolab) ; ax.set_xlabel(absclab) |
|---|
| 663 | |
|---|
| 664 | if self.xzs is not None and self.zkey == 4: ax.set_yscale('log') ; ax.set_ylim(ax.get_ylim()[::-1]) |
|---|
| 665 | if not self.vertplot and self.islog: ax.set_yscale('log') |
|---|
| 666 | if self.vertplot and self.islog: ax.set_xscale('log') |
|---|
| 667 | |
|---|
| 668 | if self.lats is not None: ax.set_xticks(np.arange(-90,91,15)) ; ax.set_xbound(lower=self.lats, upper=self.late) |
|---|
| 669 | elif self.lons is not None: ax.set_xticks(np.arange(-360,361,30)) ; ax.set_xbound(lower=self.lons, upper=self.lone) |
|---|
| 670 | elif self.locts is not None: ax.set_xticks(np.arange(0,26,2)) ; ax.set_xbound(lower=self.locts, upper=self.locte) |
|---|
| 671 | |
|---|
| 672 | ax.grid(True, linestyle=':', color='grey') |
|---|
| 673 | |
|---|
| 674 | self.gettitle() |
|---|
| 675 | fig.text(0.5, 0.95, self.title, ha='center') |
|---|
| 676 | fig.text(0.5, 0.01, self.ack, ha='center') |
|---|
| 677 | canvas = FigureCanvasAgg(fig) |
|---|
| 678 | # The size * the dpi gives the final image size |
|---|
| 679 | # a4"x4" image * 80 dpi ==> 320x320 pixel image |
|---|
| 680 | canvas.print_figure(figname, dpi=self.dpi) |
|---|
| 681 | |
|---|
| 682 | ################### |
|---|
| 683 | ### 2D analysis ### |
|---|
| 684 | ################### |
|---|
| 685 | |
|---|
| 686 | def latlon(self,ndx=37,ndy=19): |
|---|
| 687 | ### retrieve a latitude/longitude slice |
|---|
| 688 | ### default is: local time is not fixed. user-defined local time is at longitude 0. |
|---|
| 689 | save1 = self.lon ; save2 = self.lat ; save3 = self.loct |
|---|
| 690 | self.xlabel = "East longitude (degrees)" ; self.ylabel = "North latitude (degrees)" |
|---|
| 691 | self.prepare(ndx=ndx,ndy=ndy) |
|---|
| 692 | self.ininterv(-180.,180.,ndx,start=self.lons,end=self.lone) |
|---|
| 693 | self.ininterv(-90., 90.,ndy,start=self.lats,end=self.late,yaxis=True) |
|---|
| 694 | if not self.fixedlt: umst = self.loct |
|---|
| 695 | for i in range(ndx): |
|---|
| 696 | for j in range(ndy): |
|---|
| 697 | self.lon = self.xcoord[i] ; self.lat = self.ycoord[j] |
|---|
| 698 | if not self.fixedlt: self.loct = (umst + self.lon/15.) % 24 |
|---|
| 699 | self.update() ; self.put2d(i,j) |
|---|
| 700 | if not self.fixedlt: self.loct = umst |
|---|
| 701 | self.lon = save1 ; self.lat = save2 ; self.loct = save3 |
|---|
| 702 | |
|---|
| 703 | def secalt(self,ndx=37,ndy=20,typex="lat"): |
|---|
| 704 | ### retrieve a coordinate/altitude slice |
|---|
| 705 | save1 = self.lon ; save2 = self.xz ; save3 = self.loct ; save4 = self.lat |
|---|
| 706 | self.prepare(ndx=ndx,ndy=ndy) |
|---|
| 707 | self.vertlabel() ; self.ylabel = self.xlabel |
|---|
| 708 | self.vertaxis(ndy,yaxis=True) |
|---|
| 709 | if "lat" in typex: |
|---|
| 710 | self.xlabel = "North latitude (degrees)" |
|---|
| 711 | self.ininterv(-90.,90.,ndx,start=self.lats,end=self.late) |
|---|
| 712 | elif typex == "lon": |
|---|
| 713 | self.xlabel = "East longitude (degrees)" |
|---|
| 714 | self.ininterv(-180.,180.,ndx,start=self.lons,end=self.lone) |
|---|
| 715 | if not self.fixedlt: umst = self.loct |
|---|
| 716 | for i in range(ndx): |
|---|
| 717 | for j in range(ndy): |
|---|
| 718 | if typex == "lat": self.lat = self.xcoord[i] |
|---|
| 719 | elif typex == "lon": self.lon = self.xcoord[i] |
|---|
| 720 | self.xz = self.ycoord[j] |
|---|
| 721 | if not self.fixedlt: self.loct = (umst + self.lon/15.) % 24 |
|---|
| 722 | self.update() ; self.put2d(i,j) |
|---|
| 723 | if not self.fixedlt: self.loct = umst |
|---|
| 724 | self.lon = save1 ; self.xz = save2 ; self.loct = save3 ; self.lat = save4 |
|---|
| 725 | |
|---|
| 726 | def zonalmean(self,ndx=37,ndy=20,ndmean=32): |
|---|
| 727 | ### retrieve a zonalmean lat/altitude slice |
|---|
| 728 | self.fixedlt = False |
|---|
| 729 | save1 = self.lon ; save2 = self.xz ; save3 = self.loct ; save4 = self.lat |
|---|
| 730 | self.prepare(ndx=ndx,ndy=ndy) |
|---|
| 731 | self.vertlabel() ; self.ylabel = self.xlabel |
|---|
| 732 | self.vertaxis(ndy,yaxis=True) |
|---|
| 733 | self.xlabel = "North latitude (degrees)" |
|---|
| 734 | self.ininterv(-180.,180.,ndmean) |
|---|
| 735 | coordmean = self.xcoord |
|---|
| 736 | self.ininterv(-90.,90.,ndx,start=self.lats,end=self.late) |
|---|
| 737 | umst = self.loct #fixedlt false for this case |
|---|
| 738 | for i in range(ndx): |
|---|
| 739 | self.lat = self.xcoord[i] |
|---|
| 740 | for j in range(ndy): |
|---|
| 741 | self.xz = self.ycoord[j] |
|---|
| 742 | meanpres = 0. ; meandens = 0. ; meantemp = 0. ; meanzonwind = 0. ; meanmerwind = 0. ; meanmeanvar = np.zeros(5) ; meanextvar = np.zeros(100) |
|---|
| 743 | for m in range(ndmean): |
|---|
| 744 | self.lon = coordmean[m] |
|---|
| 745 | self.loct = (umst + self.lon/15.) % 24 #fixedlt false for this case |
|---|
| 746 | self.update() |
|---|
| 747 | meanpres = meanpres + self.pres/float(ndmean) ; meandens = meandens + self.dens/float(ndmean) ; meantemp = meantemp + self.temp/float(ndmean) |
|---|
| 748 | meanzonwind = meanzonwind + self.zonwind/float(ndmean) ; meanmerwind = meanmerwind + self.merwind/float(ndmean) |
|---|
| 749 | meanmeanvar = meanmeanvar + self.meanvar/float(ndmean) ; meanextvar = meanextvar + self.extvar/float(ndmean) |
|---|
| 750 | self.pres=meanpres ; self.dens=meandens ; self.temp=meantemp ; self.zonwind=meanzonwind ; self.merwind=meanmerwind |
|---|
| 751 | self.meanvar=meanmeanvar ; self.extvar=meanextvar |
|---|
| 752 | self.put2d(i,j) |
|---|
| 753 | self.loct = umst #fixedlt false for this case |
|---|
| 754 | self.lon = save1 ; self.xz = save2 ; self.loct = save3 ; self.lat = save4 |
|---|
| 755 | |
|---|
| 756 | def hovmoller(self,ndtime=25,ndcoord=20,typex="lat"): |
|---|
| 757 | ### retrieve a time/other coordinate slice |
|---|
| 758 | save1 = self.lat ; save2 = self.xz ; save3 = self.loct ; save4 = self.lon |
|---|
| 759 | if typex == "lat": |
|---|
| 760 | ndx = ndcoord ; self.xlabel = "North latitude (degrees)" |
|---|
| 761 | ndy = ndtime ; self.ylabel = "Local time (Martian hour)" |
|---|
| 762 | self.prepare(ndx=ndx,ndy=ndy) |
|---|
| 763 | self.ininterv(-90.,90.,ndx,start=self.lats,end=self.late) |
|---|
| 764 | self.ininterv(0.,24.,ndy,start=self.locts,end=self.locte,yaxis=True) |
|---|
| 765 | elif typex == "lon": |
|---|
| 766 | ndx = ndcoord ; self.xlabel = "East longitude (degrees)" |
|---|
| 767 | ndy = ndtime ; self.ylabel = "Local time (Martian hour)" |
|---|
| 768 | self.prepare(ndx=ndx,ndy=ndy) |
|---|
| 769 | self.ininterv(-180.,180.,ndx,start=self.lons,end=self.lone) |
|---|
| 770 | self.ininterv(0.,24.,ndy,start=self.locts,end=self.locte,yaxis=True) |
|---|
| 771 | elif typex == "alt": |
|---|
| 772 | ndy = ndcoord ; self.vertlabel() ; self.ylabel = self.xlabel |
|---|
| 773 | ndx = ndtime ; self.xlabel = "Local time (Martian hour)" |
|---|
| 774 | self.prepare(ndx=ndx,ndy=ndy) |
|---|
| 775 | self.vertaxis(ndy,yaxis=True) |
|---|
| 776 | self.ininterv(0.,24.,ndx,start=self.locts,end=self.locte) |
|---|
| 777 | for i in range(ndx): |
|---|
| 778 | for j in range(ndy): |
|---|
| 779 | if typex == "lat": self.lat = self.xcoord[i] ; self.loct = self.ycoord[j] |
|---|
| 780 | elif typex == "lon": self.lon = self.xcoord[i] ; self.loct = self.ycoord[j] |
|---|
| 781 | elif typex == "alt": self.xz = self.ycoord[j] ; self.loct = self.xcoord[i] |
|---|
| 782 | self.update() ; self.put2d(i,j) |
|---|
| 783 | self.lat = save1 ; self.xz = save2 ; self.loct = save3 ; self.lon = save4 |
|---|
| 784 | |
|---|
| 785 | def put2d(self,i,j): |
|---|
| 786 | ## fill in subscript i,j in output arrays |
|---|
| 787 | ## (arrays must have been correctly defined through prepare) |
|---|
| 788 | if self.prestab is None: myplot.errormess("arrays must be prepared first through self.prepare") |
|---|
| 789 | self.prestab[i,j] = self.pres ; self.denstab[i,j] = self.dens ; self.temptab[i,j] = self.temp |
|---|
| 790 | self.zonwindtab[i,j] = self.zonwind ; self.merwindtab[i,j] = self.merwind |
|---|
| 791 | self.meanvartab[i,j,1:5] = self.meanvar[0:4] ## note: var numbering according to MCD manual is kept |
|---|
| 792 | self.extvartab[i,j,1:100] = self.extvar[0:99] ## note: var numbering according to MCD manual is kept |
|---|
| 793 | |
|---|
| 794 | def makemap2d(self,choice,incwind=False,proj="cyl"): |
|---|
| 795 | ### one 2D map is created for the user-defined variable in choice. |
|---|
| 796 | self.latlon() ## a map is implicitely a lat-lon plot. otherwise it is a plot (cf. makeplot2d) |
|---|
| 797 | if choice == "wind" or incwind: |
|---|
| 798 | (windx, fieldlabwx) = self.definefield("u") |
|---|
| 799 | (windy, fieldlabwy) = self.definefield("v") |
|---|
| 800 | if choice == "wind": |
|---|
| 801 | field = np.sqrt(windx*windx + windy*windy) |
|---|
| 802 | fieldlab = "Horizontal wind speed (m/s)" |
|---|
| 803 | else: |
|---|
| 804 | (field, fieldlab) = self.definefield(choice) |
|---|
| 805 | if incwind: myplot.maplatlon(self.xcoord,self.ycoord,field,title=fieldlab,proj=proj,vecx=windx,vecy=windy) #,stride=1) |
|---|
| 806 | else: myplot.maplatlon(self.xcoord,self.ycoord,field,title=fieldlab,proj=proj) |
|---|
| 807 | mpl.figtext(0.5, 0.0, self.ack, ha='center') |
|---|
| 808 | |
|---|
| 809 | def map2d(self,tabtodo,incwind=False,proj="cyl"): |
|---|
| 810 | ### complete 2D figure with possible multiplots |
|---|
| 811 | if isinstance(tabtodo,np.str): tabtodo=[tabtodo] ## so that asking one element without [] is possible. |
|---|
| 812 | if isinstance(tabtodo,np.int): tabtodo=[tabtodo] ## so that asking one element without [] is possible. |
|---|
| 813 | fig = mpl.figure() |
|---|
| 814 | subv,subh = myplot.definesubplot( len(tabtodo) , fig ) |
|---|
| 815 | for i in range(len(tabtodo)): mpl.subplot(subv,subh,i+1) ; self.makemap2d(tabtodo[i],incwind=incwind,proj=proj) |
|---|
| 816 | |
|---|
| 817 | def htmlmap2d(self,tabtodo,incwind=False,figname="temp.png",back="zMOL"): |
|---|
| 818 | ### complete 2D figure with possible multiplots |
|---|
| 819 | ### added in 09/2012 for online MCD |
|---|
| 820 | ### see http://www.dalkescientific.com/writings/diary/archive/2005/04/23/matplotlib_without_gui.html |
|---|
| 821 | from matplotlib.figure import Figure |
|---|
| 822 | from matplotlib.backends.backend_agg import FigureCanvasAgg |
|---|
| 823 | from matplotlib.cm import get_cmap |
|---|
| 824 | from matplotlib import rcParams |
|---|
| 825 | #from mpl_toolkits.basemap import Basemap # does not work |
|---|
| 826 | from Scientific.IO import NetCDF |
|---|
| 827 | |
|---|
| 828 | filename = "/home/marshttp/surface.nc" |
|---|
| 829 | zefile = NetCDF.NetCDFFile(filename, 'r') |
|---|
| 830 | fieldc = zefile.variables[back] |
|---|
| 831 | yc = zefile.variables['latitude'] |
|---|
| 832 | xc = zefile.variables['longitude'] |
|---|
| 833 | |
|---|
| 834 | if isinstance(tabtodo,np.str): tabtodo=[tabtodo] ## so that asking one element without [] is possible. |
|---|
| 835 | if isinstance(tabtodo,np.int): tabtodo=[tabtodo] ## so that asking one element without [] is possible. |
|---|
| 836 | |
|---|
| 837 | howmanyplots = len(tabtodo) |
|---|
| 838 | if howmanyplots == 1: fig = Figure(figsize=(16,8)) |
|---|
| 839 | elif howmanyplots == 2: fig = Figure(figsize=(8,8)) |
|---|
| 840 | elif howmanyplots == 3: fig = Figure(figsize=(8,16)) |
|---|
| 841 | elif howmanyplots == 4: fig = Figure(figsize=(16,8)) |
|---|
| 842 | |
|---|
| 843 | subv,subh = myplot.definesubplot( len(tabtodo) , fig ) |
|---|
| 844 | |
|---|
| 845 | for i in range(len(tabtodo)): |
|---|
| 846 | yeah = fig.add_subplot(subv,subh,i+1) |
|---|
| 847 | choice = tabtodo[i] |
|---|
| 848 | self.latlon(ndx=64,ndy=48) |
|---|
| 849 | ## a map is implicitely a lat-lon plot. otherwise it is a plot (cf. makeplot2d) |
|---|
| 850 | (field, fieldlab) = self.definefield(choice) |
|---|
| 851 | if incwind: (windx, fieldlabwx) = self.definefield("u") ; (windy, fieldlabwy) = self.definefield("v") |
|---|
| 852 | |
|---|
| 853 | proj="moll" ; colorb= self.colorm ; ndiv=20 ; zeback="molabw" ; trans=1.0 #0.6 |
|---|
| 854 | vecx=None ; vecy=None ; stride=2 |
|---|
| 855 | lon = self.xcoord |
|---|
| 856 | lat = self.ycoord |
|---|
| 857 | |
|---|
| 858 | #[lon2d,lat2d] = np.meshgrid(lon,lat) |
|---|
| 859 | ##### define projection and background. define x and y given the projection |
|---|
| 860 | ##[wlon,wlat] = myplot.latinterv() |
|---|
| 861 | ##yeahm = myplot.define_proj(proj,wlon,wlat,back=zeback,blat=None,blon=None) |
|---|
| 862 | ##x, y = yeahm(lon2d, lat2d) |
|---|
| 863 | #map = Basemap(projection='ortho',lat_0=45,lon_0=-100) |
|---|
| 864 | #x, y = map(lon2d, lat2d) |
|---|
| 865 | |
|---|
| 866 | #### TEMP |
|---|
| 867 | x = lon ; y = lat |
|---|
| 868 | |
|---|
| 869 | ## define field. bound field. |
|---|
| 870 | what_I_plot = np.transpose(field) |
|---|
| 871 | zevmin, zevmax = myplot.calculate_bounds(what_I_plot,vmin=self.min2d,vmax=self.max2d) |
|---|
| 872 | what_I_plot = myplot.bounds(what_I_plot,zevmin,zevmax) |
|---|
| 873 | ## define contour field levels. define color palette |
|---|
| 874 | ticks = ndiv + 1 |
|---|
| 875 | zelevels = np.linspace(zevmin,zevmax,ticks) |
|---|
| 876 | palette = get_cmap(name=colorb) |
|---|
| 877 | |
|---|
| 878 | # You can set negative contours to be solid instead of dashed: |
|---|
| 879 | rcParams['contour.negative_linestyle'] = 'solid' |
|---|
| 880 | ## contours topo |
|---|
| 881 | zelevc = np.linspace(-9.,20.,11) |
|---|
| 882 | yeah.contour( xc, yc, fieldc, zelevc, colors='black',linewidths = 0.4) |
|---|
| 883 | yeah.contour( np.array(xc) + 360., yc, fieldc, zelevc, colors='black',linewidths = 0.4) |
|---|
| 884 | yeah.contour( np.array(xc) - 360., yc, fieldc, zelevc, colors='black',linewidths = 0.4) |
|---|
| 885 | # contour field |
|---|
| 886 | c = yeah.contourf( x, y, what_I_plot, zelevels, cmap = palette, alpha = trans ) |
|---|
| 887 | clb = Figure.colorbar(fig,c,orientation='vertical',format=self.fmt,ticks=np.linspace(zevmin,zevmax,num=min([ticks/2+1,21]))) |
|---|
| 888 | clb.set_label(fieldlab) |
|---|
| 889 | if incwind: |
|---|
| 890 | [x2d,y2d] = np.meshgrid(x,y) |
|---|
| 891 | yeah.quiver(x2d,y2d,np.transpose(windx),np.transpose(windy)) |
|---|
| 892 | ax = fig.gca() ; ax.set_ylabel("Latitude") ; ax.set_xlabel("Longitude") |
|---|
| 893 | ax.set_xticks(np.arange(-360,361,45)) ; ax.set_xbound(lower=self.lons, upper=self.lone) |
|---|
| 894 | ax.set_yticks(np.arange(-90,91,30)) ; ax.set_ybound(lower=self.lats, upper=self.late) |
|---|
| 895 | self.gettitle() |
|---|
| 896 | fig.text(0.5, 0.95, self.title, ha='center') |
|---|
| 897 | fig.text(0.5, 0.01, self.ack, ha='center') |
|---|
| 898 | canvas = FigureCanvasAgg(fig) |
|---|
| 899 | # The size * the dpi gives the final image size |
|---|
| 900 | # a4"x4" image * 80 dpi ==> 320x320 pixel image |
|---|
| 901 | canvas.print_figure(figname, dpi=self.dpi) |
|---|
| 902 | |
|---|
| 903 | def htmlplot2d(self,tabtodo,figname="temp.png"): |
|---|
| 904 | ### complete 2D figure with possible multiplots |
|---|
| 905 | ### added in 10/2012 for online MCD |
|---|
| 906 | ### see http://www.dalkescientific.com/writings/diary/archive/2005/04/23/matplotlib_without_gui.html |
|---|
| 907 | from matplotlib.figure import Figure |
|---|
| 908 | from matplotlib.backends.backend_agg import FigureCanvasAgg |
|---|
| 909 | from matplotlib.cm import get_cmap |
|---|
| 910 | if isinstance(tabtodo,np.str): tabtodo=[tabtodo] ## so that asking one element without [] is possible. |
|---|
| 911 | if isinstance(tabtodo,np.int): tabtodo=[tabtodo] ## so that asking one element without [] is possible. |
|---|
| 912 | |
|---|
| 913 | howmanyplots = len(tabtodo) |
|---|
| 914 | if howmanyplots == 1: fig = Figure(figsize=(16,8)) |
|---|
| 915 | elif howmanyplots == 2: fig = Figure(figsize=(8,8)) |
|---|
| 916 | elif howmanyplots == 3: fig = Figure(figsize=(8,16)) |
|---|
| 917 | elif howmanyplots == 4: fig = Figure(figsize=(16,8)) |
|---|
| 918 | |
|---|
| 919 | subv,subh = myplot.definesubplot( len(tabtodo) , fig ) |
|---|
| 920 | |
|---|
| 921 | for i in range(len(tabtodo)): |
|---|
| 922 | yeah = fig.add_subplot(subv,subh,i+1) |
|---|
| 923 | choice = tabtodo[i] |
|---|
| 924 | |
|---|
| 925 | if self.lons is not None: |
|---|
| 926 | if self.locts is None: self.secalt(ndx=64,ndy=35,typex="lon") |
|---|
| 927 | else: self.hovmoller(ndcoord=64,typex="lon") |
|---|
| 928 | elif self.lats is not None: |
|---|
| 929 | if self.locts is None: |
|---|
| 930 | if self.zonmean: self.zonalmean() |
|---|
| 931 | else: self.secalt(ndx=48,ndy=35,typex="lat") |
|---|
| 932 | else: self.hovmoller(ndcoord=48,typex="lat") |
|---|
| 933 | else: |
|---|
| 934 | self.hovmoller(ndcoord=35,typex="alt") |
|---|
| 935 | |
|---|
| 936 | (field, fieldlab) = self.definefield(choice) |
|---|
| 937 | |
|---|
| 938 | colorb=self.colorm ; ndiv=20 |
|---|
| 939 | |
|---|
| 940 | ## define field. bound field. |
|---|
| 941 | what_I_plot = np.transpose(field) |
|---|
| 942 | zevmin, zevmax = myplot.calculate_bounds(what_I_plot,vmin=self.min2d,vmax=self.max2d) |
|---|
| 943 | what_I_plot = myplot.bounds(what_I_plot,zevmin,zevmax) |
|---|
| 944 | ## define contour field levels. define color palette |
|---|
| 945 | ticks = ndiv + 1 |
|---|
| 946 | zelevels = np.linspace(zevmin,zevmax,ticks) |
|---|
| 947 | palette = get_cmap(name=colorb) |
|---|
| 948 | # contour field |
|---|
| 949 | c = yeah.contourf( self.xcoord, self.ycoord, what_I_plot, zelevels, cmap = palette ) |
|---|
| 950 | clb = Figure.colorbar(fig,c,orientation='vertical',format=self.fmt,ticks=np.linspace(zevmin,zevmax,num=min([ticks/2+1,21]))) |
|---|
| 951 | clb.set_label(fieldlab) |
|---|
| 952 | ax = fig.gca() ; ax.set_ylabel(self.ylabel) ; ax.set_xlabel(self.xlabel) |
|---|
| 953 | |
|---|
| 954 | if self.lons is not None: ax.set_xticks(np.arange(-360,361,45)) ; ax.set_xbound(lower=self.lons, upper=self.lone) |
|---|
| 955 | elif self.lats is not None: ax.set_xticks(np.arange(-90,91,30)) ; ax.set_xbound(lower=self.lats, upper=self.late) |
|---|
| 956 | |
|---|
| 957 | if self.locts is not None: |
|---|
| 958 | if self.xzs is not None: ax.set_xticks(np.arange(0,26,2)) ; ax.set_xbound(lower=self.locts, upper=self.locte) |
|---|
| 959 | else: ax.set_yticks(np.arange(0,26,2)) ; ax.set_ybound(lower=self.locts, upper=self.locte) |
|---|
| 960 | |
|---|
| 961 | if self.zkey == 4 and self.xzs is not None: |
|---|
| 962 | ax.set_yscale('log') ; ax.set_ylim(ax.get_ylim()[::-1]) |
|---|
| 963 | else: |
|---|
| 964 | #ax.set_yticks(np.arange(self.xzs,self.xze,10000.)) ; |
|---|
| 965 | ax.set_ybound(lower=self.xzs, upper=self.xze) |
|---|
| 966 | |
|---|
| 967 | self.gettitle() |
|---|
| 968 | fig.text(0.5, 0.95, self.title, ha='center') |
|---|
| 969 | fig.text(0.5, 0.01, self.ack, ha='center') |
|---|
| 970 | canvas = FigureCanvasAgg(fig) |
|---|
| 971 | # The size * the dpi gives the final image size |
|---|
| 972 | # a4"x4" image * 80 dpi ==> 320x320 pixel image |
|---|
| 973 | canvas.print_figure(figname, dpi=self.dpi) |
|---|
| 974 | |
|---|
| 975 | ### TODO: makeplot2d, plot2d, passer plot settings |
|---|
| 976 | |
|---|
