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makemeso @ 332

Last change on this file since 332 was 330, checked in by aslmd, 14 years ago
MESOSCALE: changes related to g95 support. but the model does not compile apparently. notes taken in NOTES.txt but sorry g95 with LMD_MM_MARS no longer supported at least on 64bits machines. LMDZ.MARS: minor changes related to warning while trying to compile with g95.
Property svn:executable set to ``*
File size: 31.9 KB

Line
1	#! /bin/bash
2
3
4	##################################
5	# makemeso allows you to compile #
6	# WRF with modified LMD physics #
7	##################################
8
9	##############################
10	# Author: A. Spiga #
11	# New version : October 2008 #
12	# Last update : January 2009 #
13	# November 09 #
14	# January 11 #
15	##############################
16
17	###############################
18	#### Type makemeso -h for help
19	###############################
20
21
22
23	##############################################################################################
24	##############################################################################################
25	##############################################################################################
26	##############################################################################################
27
28	donotcompile=0
29	donotallow=0
30	config=''
31	donotcompilephys=0
32	justphys=0
33	debug=0
34	fresh_start=0
35	phys=""
36	scenario=""
37	while getopts "drc:njhgpfs:x" options; do
38	case $options in
39	d ) donotcompile=1;; ## just to check the compile folder
40	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
41	c ) config="${OPTARG}";; ## idealized cases
42	n ) donotcompilephys=1;; ## do not recompile physics
43	j ) justphys=1;; ## just compile LMD physics
44	g ) debug=1;; ## debug mode
45	p ) phys="newphys_";; ## with new physics
46	f ) fresh_start=1;; ## a fresh start
47	s ) scenario="${OPTARG}";; ## a specific scenario, you need a corresponding "mars_lmd_..."
48	x ) donotcompile=1;phys="nophys_";donotcompilephys=1;; ## a case with no LMD physics included
49	h ) echo "
50	# Use:
51	#
52	# makemeso ## basic use (real-case configuration)
53	#
54	# makemeso -d ## no compilation, just check the name of the compile folder
55	#
56	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
57	# makemeso -c les ## large-eddy simulations mode based on WRFV3
58	#
59	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
60	#
61	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
62	# makemeso -r < last ## basic use + skip questions + only known config
63	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
64	#
65	# makemeso -j ## just compile the LMD physics
66	#
67	# makemeso -g ## debug mode
68	#
69	# makemeso -h ## display options
70	#
71	# makemeso -p ## with new LMD physics
72	#
73	# makemeso -f ## fresh start [clean -a]
74	#
75	# makemeso -s storm ## a specific scenario, you need a corresponding mars_lmd_... (only for newphys)
76	#
77	# makemeso -x ## a case with no LMD physics included
78	" ; exit ;;
79	esac
80	done
81
82	#--------------
83	# talk w/ user
84	#--------------
85	echo '****************************************'
86	echo ' LMD Mesoscale Model Compiler. Welcome.'
87	echo '****************************************'
88	if [[ "${phys}" == "newphys_" ]]
89	then
90	echo '*********with new physics***********'
91	echo '****************************************'
92	fi
93	# computer
94	uname -a \| grep x86_64 > /dev/null
95	if [[ "$?" == 0 ]]
96	then
97	machine='64'
98	else
99	machine='32'
100	fi
101	# compiler
102	echo "Supported compiler options are "
103	echo " <1> pgf90"
104	echo " <2> g95"
105	echo " <3> pgf90 + mpi"
106	echo " <4> ifort"
107	echo " <5> ifort + mpi"
108	echo " <7> xlf + mpi (IBM AIX)"
109	echo "Your choice ?" ; read reply
110	case ${reply} in
111	1) compilo='pgf' ; numproc=1 ;;
112	2) compilo='g95' ; numproc=1 ;;
113	3) compilo='mpi'
114	if [[ "${WHERE_MPI}" = "" ]]
115	then
116	echo Please initialize the variable WHERE_MPI in your environnement
117	exit
118	fi
119	echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
120	4) compilo='ifort' ; numproc=1 ;;
121	5) compilo='mpifort' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
122	7) compilo='mpixlf' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
123	### for tests
124	99) compilo='gnu' ; numproc=1 ;;
125	*) echo not supported by this script ; exit ;;
126	esac
127	# dimensions
128	if [ ${donotcompile} -eq 0 ]
129	then
130	echo Grid points in longitude ? ; read lon
131	echo Grid points in latitude ? ; read lat
132	echo Number of vertical levels ? ; read level
133	fi
134	echo Number of domains ? ; read dom
135
136	###PB lecture dom si < last
137
138	case ${dom} in
139	1) single='_single' ;;
140	*) single='_nest' ;;
141	esac
142	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
143	then
144	single=''
145	fi
146
147	testflag=''
148	####
149	#testflag='_test'
150	####
151
152	conf_wrf="${config}${scenario}${phys}${compilo}_${machine}${single}${testflag}"
153	\rm what_folder 2> /dev/null
154	echo ${conf_wrf} > what_folder
155	if [ ${donotcompile} -eq 1 ]
156	then
157	#\rm what_folder 2> /dev/null
158	#echo '**********************'
159	#echo '*** Your folder is ...'
160	#echo '**********************'
161	#echo ${conf_wrf} \| tee what_folder
162	#cat what_folder
163	#echo ${conf_wrf} > what_folder
164	#echo ${reply} > what_compilo
165	#echo ${numproc} > what_numproc
166	if [[ "${phys}" != "nophys_" ]]
167	then
168	exit
169	fi
170	else
171	echo Number of tracers ? ; read tra
172	if [ ${tra} -eq 0 ]
173	then
174	tra=1
175	fi
176	if [[ "${phys}" == "newphys_" ]]
177	then
178	echo "How many types of scatterer are you using ? 1 [dust] or 2 [dust + water ice]" ; read scat
179	else
180	scat=1 ## dummy stuff
181	fi
182	fi
183	# folder
184	mkdir ${conf_wrf} 2> /dev/null
185	if [[ "$?" == 0 ]]
186	then
187	echo new folder ... link sources
188	if [[ "${phys}" == "newphys_" ]]
189	then
190	\rm copy_model_tmp > /dev/null 2> /dev/null
191	if [[ "${scenario}" == "" ]]
192	then
193	sed s+"mars_lmd"+"mars_lmd_new"+g SRC/SCRIPTS/copy_model > copy_model_tmp
194	else
195	echo SCENARIO ${scenario} DID YOU INCLUDE THE SPECIFIC folder ? ; read dummy
196	sed s+"mars_lmd"+"mars_lmd_new_${scenario}"+g SRC/SCRIPTS/copy_model > copy_model_tmp
197	if [[ "${config}" == "les" ]]
198	then
199	echo "NOT SUPPORTED, check options"
200	exit
201	fi
202	fi
203	if [[ "${config}" == "les" ]]
204	then
205	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g copy_model_tmp > yeah
206	mv yeah copy_model_tmp
207	fi
208	chmod 755 copy_model_tmp
209	./copy_model_tmp
210	\rm copy_model_tmp
211	mv zeWRFV2 ${conf_wrf}/WRFV2
212	cd ${conf_wrf}/WRFV2
213	if [[ "${scenario}" == "" ]]
214	then
215	ln -sf mars_lmd_new mars_lmd
216	else
217	ln -sf mars_lmd_new_${scenario} mars_lmd
218	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/Registry.EM mars_lmd_new_${scenario}/
219	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/*.inc mars_lmd_new_${scenario}/
220	cd Registry ; ln -sf ../mars_lmd_new_${scenario}/Registry.EM . ; cd ..
221	fi
222	#ln -sf meso_callkeys_newphys.h meso_callkeys.h
223	cd Registry ; Registry.bash ; cd ..
224	else
225	if [[ "${config}" == "les" ]]
226	then
227	### NB: With physics: LES folder // Without physics : LESnophys_ folder
228	### ---- because differences in 'modif' folder ----
229	sed s+"PWD/SRC/"+"PWD/SRC/LES$phys/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
230	else
231	cp SRC/SCRIPTS/copy_model copy_model_tmp
232	fi
233	chmod 755 copy_model_tmp
234	./copy_model_tmp
235	\rm copy_model_tmp
236	mv zeWRFV2 ${conf_wrf}/WRFV2
237	cd ${conf_wrf}/WRFV2
238	cd Registry ; Registry.bash ; cd ..
239	fi
240	#### sparadrap consequent a l'utilisation de copy_model pour les liens
241	#### -- car alors il manque fftpack
242	if [[ "${config}" == "les" ]]
243	then
244	if [[ "${phys}" == "nophys_" ]]
245	then
246	## voir ci-dessus pour le folder
247	cp ../../SRC/LES$phys/correcfft ./
248	else
249	cp ../../SRC/LES/correcfft ./
250	fi
251	./correcfft
252	\rm correcfft
253	fi
254	else
255	cd ${conf_wrf}/WRFV2
256	if [ ${fresh_start} -eq 1 ]
257	then
258	echo '*** FRESH START, I clean everything'
259	### clean the whole place
260	clean -a > /dev/null 2> /dev/null
261	### get a possibly modified registry !
262	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
263	### ensure the model will be recompiled from scratch with correct registry
264	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
265	# answer='y' ## a voir... pas si sur
266	# else
267	# if [[ "${phys}" != "nophys_" ]]
268	# then
269	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
270	# case ${answer} in
271	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
272	# *) answer='no' ;;
273	# esac
274	# fi
275	fi
276	fi
277
278	# summary
279	echo '**********************'
280	echo '*** Your folder is ...'
281	echo '**********************'
282	echo ${conf_wrf}
283	echo '**********************'
284	echo '****************************************'
285	echo so ...
286	echo your computer is ${machine} bits
287	echo ${compilo} is your compiler
288	if [[ "${compilo}" = "mpi" ]]
289	then
290	echo MPICH is in ${WHERE_MPI}
291	fi
292	echo you will use ${numproc} processors
293	echo you have ${lon} x points
294	echo ' '${lat} y points
295	echo ' '${level} z points
296	echo ' '${dom} domains
297	echo ' '${tra} tracers
298	if [[ "${phys}" == "newphys_" ]]
299	then
300	echo ' '${scat} scatterers
301	fi
302	echo '****************************************'
303	# save answer
304	\rm last 2> /dev/null
305	touch last
306	echo ${reply} >> last
307	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
308	then
309	echo ${numproc} >> last
310	fi
311	echo ${lon} >> last
312	echo ${lat} >> last
313	echo ${level} >> last
314	echo ${dom} >> last
315	echo ${tra} >> last
316	echo ${scat} >> last
317	#echo ${answer} >> last
318
319	#------------
320	# log files
321	#------------
322	\rm log_compile 2> /dev/null
323	\rm log_error 2> /dev/null
324
325	#-----------------
326	# configure WRF
327	#-----------------
328	mv configure.wrf configure.wrf.bak 2> /dev/null
329	########################
330	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
331
332	#### in this case options are different because for LES, WRFV3 is used
333	if [[ "${config}" == "les" ]]
334	then
335	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
336	fi
337
338	case ${conf_wrf_forall} in
339
340	#######LES-specific (WRFV3-based) -- previously in 'makeles'
341	#######
342
343	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
344	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
345	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
346	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
347	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
348	then
349	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
350	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
351	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
352	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
353	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
354	else
355	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
356	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
357	fi
358	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
359	### pas forcement necessaire ici mais OK
360	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
361	\rm conf > /dev/null ;;
362
363	lesmpifort_64) ## MPI (dm) 64 bits IFORT
364	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
365	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
366	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
367	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
368	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
369	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
370	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
371	\rm conf > /dev/null ;;
372
373	#######
374	#######LES-specific (WRFV3-based) -- previously in 'makeles'
375
376	#######TEST TEST
377	# GFORTRAN, 64 bits, no nesting
378	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
379	echo 15 \| configure > log_compile 2> log_error
380	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
381	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
382	#######TEST TEST
383	# PGF90, 32 bits, no nesting
384	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
385	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
386	# PGF90, 32 bits, nesting
387	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
388	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
389	# PGF90, 64 bits, no nesting
390	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
391	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
392	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
393	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
394	# PGF90, 64 bits, nesting
395	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
396	echo 4 \| configure > log_compile 2> log_error
397	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
398	# G95, 32 bits, no nesting
399	g95_32_single) echo 13 \| configure > log_compile 2> log_error
400	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
401	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
402	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
403	echo 14 \| configure > log_compile 2> log_error
404	##### marche pas ....
405	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
406	#sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
407	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
408	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
409	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
410	# IFORT, 64 bits, no nesting
411	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
412	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
413	## !!! NETCDF must be defined
414	sed s+"lio_grib_share"+"lio_grib_share -L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
415	mv -f yeah configure.wrf ;;
416	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
417	echo 9 \| configure > log_compile 2> log_error
418	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
419	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
420	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
421	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
422	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
423	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
424	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
425	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
426	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
427	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
428	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
429	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
430	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
431	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
432	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
433	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
434	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
435	### necessary even if mpi-selector is used (no need in makegcm though)
436	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
437	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
438	## !!! NETCDF must be defined
439	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
440	mv -f yeah configure.wrf
441	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
442	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
443	mv -f yeah configure.wrf ;;
444	# MPICH, 64 bits, no nesting / nesting
445	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
446	echo 3 \| configure > log_compile 2> log_error
447	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
448	### the following line is necessary because readtesassim has a line "use netcdf" in it!
449	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
450	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
451	#\| sed s+"fastsse"+"fast"+g > yeah
452	mv -f yeah configure.wrf ;;
453	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
454	##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
455	##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
456	#mv -f yeah configure.wrf ;;
457	# MPICH, 64 bits, OK with periodic BC but no positive definite
458	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
459	echo 2 \| configure > log_compile 2> log_error
460	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
461	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
462	mv -f yeah configure.wrf ;;
463	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
464	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
465	echo 3 \| configure > log_compile 2> log_error
466	sed -f mars.sed configure.wrf > yeah
467	mv -f yeah configure.wrf ;;
468	# ANYTHING ELSE
469	*) echo NO PRESETS ...
470	if [ ${donotallow} -eq 0 ]
471	then
472	configure
473	else
474	# problem when an input file is used
475	echo 'please cd to '$PWD' and type ./configure'
476	exit
477	fi ;;
478	esac
479	########################
480
481
482	### here a case structure would be great
483
484	if [[ "${phys}" == "newphys_" ]]
485	then
486	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
487	then
488	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
489	else
490	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
491	fi
492	mv -f yeah configure.wrf
493	fi
494
495	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment
496	then
497	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
498	mv -f yeah configure.wrf
499	fi
500
501	################
502	if [[ "${phys}" == "nophys_" ]]
503	then
504	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
505	then
506	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
507	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
508	else
509	### not tested yet but should be working
510	echo CAUTION CAUTION CAUTION NOT FULLY TESTED
511	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
512	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
513	fi
514	fi
515	################
516
517	if [ ${debug} -ne 0 ] # not working for xlf!
518	then
519	echo 'DEBUG DEBUG DEBUG DEBUG'
520	sed s+"#-g"+"-g"+g configure.wrf > yeah
521	mv -f yeah configure.wrf
522	fi
523
524
525	##################################################
526	# compile physics
527	##################################################
528	if [ ${donotcompilephys} -eq 0 ]
529	then
530
531	cd mars_lmd/
532
533	# required size
534	#----------------
535	case ${numproc} in
536	1) divx=1 ; divy=1 ;;
537	2) divx=1 ; divy=2 ;;
538	4) divx=2 ; divy=2 ;;
539	6) divx=2 ; divy=3 ;;
540	8) divx=2 ; divy=4 ;;
541	12) divx=3 ; divy=4 ;;
542	16) divx=4 ; divy=4 ;;
543	20) divx=4 ; divy=5 ;;
544	24) divx=4 ; divy=6 ;;
545	32) divx=4 ; divy=8 ;;
546	64) divx=8 ; divy=8 ;;
547	128) divx=8 ; divy=16 ;;
548	*) echo not yet supported ; exit ;;
549	esac
550	physx=$(expr ${lon} - 1)
551	restex=$(expr ${physx} \% ${divx})
552	physy=$(expr ${lat} - 1)
553	restey=$(expr ${physy} \% ${divy})
554	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
555	then
556	echo nx-1 shall be divided by ${divx}
557	echo ny-1 shall be divided by ${divy}
558	exit
559	fi
560	physx=$(expr ${physx} \/ ${divx})
561	physy=$(expr ${physy} \/ ${divy})
562	physz=$(expr ${level} - 1)
563
564	# change this if you change num_soil_layers in WRF
565	# -- default is 10
566	if [[ "${phys}" == "newphys_" ]]
567	then
568	soilsize=18 ## nouvelle physique
569	else
570	soilsize=10
571	fi
572
573	# GCM environment variables
574	#--------------------------
575	export LMDGCM=$PWD
576	export LIBOGCM=$PWD/libo
577
578	# generate the appropriate dimphys
579	#---------------------------------
580	cd libf/phymars
581	\rm dimphys.h 2> /dev/null
582	if [[ "${phys}" == "newphys_" ]]
583	then
584	ln -sf meso_inc/meso_dimphys.h_ref .
585	fi
586	physize=$(expr ${physx} \* ${physy})
587	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
588	head -15 dimphys.h
589	### TEST new new phys
590	if [[ "${phys}" == "newphys_" ]]
591	then
592	touch gr_fi_dyn.F.lien
593	ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
594	###############################
595	\rm scatterers.h
596	cat << EOF > scatterers.h
597	!-----------------------------------------------------------------------
598	! INCLUDE 'scatterers.h'
599	!
600	! Number of kind of tracer radiative properties
601	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
602	! (ex: naerkind=1 if you use one dust mode without ice ...)
603	! (ex: naerkind=2 if you use one dust mode and active ice ...)
604	!-----------------------------------------------------------------------
605
606	integer, parameter :: naerkind=${scat}
607
608	!-----------------------------------------------------------------------
609	EOF
610	###############################
611	###############################
612	fi
613	###
614	###
615	cd ../..
616
617	# prepare for nesting
618	#---------------------
619	cd libf
620	duplicate${dom} 2> /dev/null
621	cd ..
622
623	# compile physics
624	#--------------------------
625	\rm libf/grid/dimensions.h 2> /dev/null
626	\rm -rf libo/* 2> /dev/null
627	echo 1. compiling LMD physics ...
628	echo compilation info in:
629	echo $PWD/libo/log_compile_phys
630
631	if [ ${debug} -ne 0 ]
632	then
633	echo 'DEBUG DEBUG DEBUG DEBUG'
634	nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
635	else
636	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
637	fi
638	echo ... done
639	# clean the duplicate routines
640	cd libf
641	duplicate1 2> /dev/null
642	cd ..
643
644	# merge LMD executables in one lib
645	#--------------------------------------
646	cd libo
647	mkdir temp
648	#cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp
649	cp -f LINUX/.a temp
650	cd temp
651	ar x libbibio.a
652	ar x libphymars.a
653	ar x libaeronomars.a
654	\rm *.a
655	ar r liblmd.a *
656	cp -f liblmd.a ..
657	cd ..
658	\rm -r temp
659	nm liblmd.a > liblmd_content
660	# finish merge
661	cd ..
662
663	# save a copy
664	#--------------
665	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}_${scat}
666	echo '****************************************'
667
668	# ok
669	#----
670	cd ..
671
672	# manage nest includes in module_lmd_driver.F
673	#----
674	cp call_meso_inifis$dom.inc call_meso_inifis.inc
675	cp call_meso_physiq$dom.inc call_meso_physiq.inc
676
677
678	fi
679	##################################################
680	# END compile physics
681	##################################################
682
683	#------------------
684	# compile WRF
685	#------------------
686	if [ ${justphys} -eq 0 ]
687	then
688
689	echo 2. compiling WRF dynamical core ...
690
691	if [[ "${phys}" == "nophys_" ]]
692	then
693	echo 'NO LMD PHYSICS included'
694	else
695	if [[ ! ( -f "call_meso_physiq.inc" ) ]]
696	then
697	echo 'did you compile the physics ? no call_meso_physiq.inc !'
698	exit
699	fi
700	fi
701
702	# be sure to compile with the most recent physics
703	touch phys/module_lmd_driver.F
704
705	# talk to user
706	echo '>>> compiling ... this may be long ... <<<'
707	echo check progress in:
708	echo $PWD/log_compile
709	echo check possible errors in:
710	echo $PWD/log_error
711
712	# compile ...
713	case ${config} in
714	'') compile em_real > log_compile 2> log_error
715	# save executables
716	cd main
717	if [[ -f real.exe ]]
718	then
719	echo 'Looks good ! real.exe is here...'
720	fi
721	if [[ -f wrf.exe ]]
722	then
723	echo 'Looks good ! wrf.exe is here...'
724	fi
725	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
726	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
727	cd .. ;;
728	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
729	echo '>>> YOUR CONFIG IS : '${config}
730	compile em_quarter_ss > log_compile 2> log_error
731	# save executables
732	cd main
733	if [[ -f ideal.exe ]]
734	then
735	echo 'Looks good ! ideal.exe is here...'
736	fi
737	if [[ -f wrf.exe ]]
738	then
739	echo 'Looks good ! wrf.exe is here...'
740	fi
741	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
742	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
743	cd .. ;;
744	'les') echo '>>> YOUR CONFIG IS : '${config}
745	mkdir 'test/em_les' 2> /dev/null
746	compile em_les > log_compile 2> log_error
747	# save executables
748	cd main
749	if [[ -f ideal.exe ]]
750	then
751	echo 'Looks good ! ideal.exe is here...'
752	fi
753	if [[ -f wrf.exe ]]
754	then
755	echo 'Looks good ! wrf.exe is here...'
756	fi
757	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
758	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
759	cd .. ;;
760	*) echo not supported... please use ; echo ideal les ; exit ;;
761	esac
762	echo '*****last lines from log_error*******'
763	tail -n 20 log_error
764	fi
765
766	# the end
767	echo '****************************************'
768	echo 'done.'
769	echo '****************************************'
770	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}
771	mv last ../../
772
773	# add here specific messages
774	if [[ "${dom}" != "1" ]]
775	then
776	nest=$(expr ${lon} + 4)
777	echo NB: in namelist.input, please set:
778	echo '
779	max_dom = '$dom'
780	s_we = 1,1,
781	e_we = '$lon','$nest',
782	s_sn = 1,1,
783	e_sn = '$lat','$nest',
784	s_vert = 1,1,
785	e_vert = '$level','$level','
786	fi
787

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