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makemeso @ 308

Last change on this file since 308 was 262, checked in by aslmd, 13 years ago
MESOSCALE: major commit at an absurd hour. new version for user manual finished.
Property svn:executable set to ``*
File size: 31.1 KB

Line
1	#! /bin/bash
2
3
4	##################################
5	# makemeso allows you to compile #
6	# WRF with modified LMD physics #
7	##################################
8
9	##############################
10	# Author: A. Spiga #
11	# New version : October 2008 #
12	# Last update : January 2009 #
13	# November 09 #
14	# January 11 #
15	##############################
16
17	###############################
18	#### Type makemeso -h for help
19	###############################
20
21
22
23	##############################################################################################
24	##############################################################################################
25	##############################################################################################
26	##############################################################################################
27
28	donotcompile=0
29	donotallow=0
30	config=''
31	donotcompilephys=0
32	justphys=0
33	debug=0
34	fresh_start=0
35	phys=""
36	scenario=""
37	while getopts "drc:njhgpfs:x" options; do
38	case $options in
39	d ) donotcompile=1;; ## just to check the compile folder
40	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
41	c ) config="${OPTARG}";; ## idealized cases
42	n ) donotcompilephys=1;; ## do not recompile physics
43	j ) justphys=1;; ## just compile LMD physics
44	g ) debug=1;; ## debug mode
45	p ) phys="newphys_";; ## with new physics
46	f ) fresh_start=1;; ## a fresh start
47	s ) scenario="${OPTARG}";; ## a specific scenario, you need a corresponding "mars_lmd_..."
48	x ) donotcompile=1;phys="nophys_";donotcompilephys=1;; ## a case with no LMD physics included
49	h ) echo "
50	# Use:
51	#
52	# makemeso ## basic use (real-case configuration)
53	#
54	# makemeso -d ## no compilation, just check the name of the compile folder
55	#
56	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
57	# makemeso -c les ## large-eddy simulations mode based on WRFV3
58	#
59	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
60	#
61	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
62	# makemeso -r < last ## basic use + skip questions + only known config
63	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
64	#
65	# makemeso -j ## just compile the LMD physics
66	#
67	# makemeso -g ## debug mode
68	#
69	# makemeso -h ## display options
70	#
71	# makemeso -p ## with new LMD physics
72	#
73	# makemeso -f ## fresh start [clean -a]
74	#
75	# makemeso -s storm ## a specific scenario, you need a corresponding mars_lmd_... (only for newphys)
76	#
77	# makemeso -x ## a case with no LMD physics included
78	" ; exit ;;
79	esac
80	done
81
82	#--------------
83	# talk w/ user
84	#--------------
85	echo '****************************************'
86	echo ' LMD Mesoscale Model Compiler. Welcome.'
87	echo '****************************************'
88	if [[ "${phys}" == "newphys_" ]]
89	then
90	echo '*********with new physics***********'
91	echo '****************************************'
92	fi
93	# computer
94	uname -a \| grep x86_64 > /dev/null
95	if [[ "$?" == 0 ]]
96	then
97	machine='64'
98	else
99	machine='32'
100	fi
101	# compiler
102	echo "Supported compiler options are "
103	echo " <1> pgf90"
104	echo " <2> g95"
105	echo " <3> pgf90 + mpi"
106	echo " <4> ifort"
107	echo " <5> ifort + mpi"
108	echo " <7> xlf + mpi (IBM AIX)"
109	echo "Your choice ?" ; read reply
110	case ${reply} in
111	1) compilo='pgf' ; numproc=1 ;;
112	2) compilo='g95' ; numproc=1 ;;
113	3) compilo='mpi'
114	if [[ "${WHERE_MPI}" = "" ]]
115	then
116	echo Please initialize the variable WHERE_MPI in your environnement
117	exit
118	fi
119	echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
120	4) compilo='ifort' ; numproc=1 ;;
121	5) compilo='mpifort' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
122	7) compilo='mpixlf' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
123	### for tests
124	99) compilo='gnu' ; numproc=1 ;;
125	*) echo not supported by this script ; exit ;;
126	esac
127	# dimensions
128	if [ ${donotcompile} -eq 0 ]
129	then
130	echo Grid points in longitude ? ; read lon
131	echo Grid points in latitude ? ; read lat
132	echo Number of vertical levels ? ; read level
133	fi
134	echo Number of domains ? ; read dom
135
136	###PB lecture dom si < last
137
138	case ${dom} in
139	1) single='_single' ;;
140	*) single='_nest' ;;
141	esac
142	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
143	then
144	single=''
145	fi
146
147	testflag=''
148	####
149	#testflag='_test'
150	####
151
152	conf_wrf="${config}${scenario}${phys}${compilo}_${machine}${single}${testflag}"
153	\rm what_folder 2> /dev/null
154	echo ${conf_wrf} > what_folder
155	if [ ${donotcompile} -eq 1 ]
156	then
157	#\rm what_folder 2> /dev/null
158	#echo '**********************'
159	#echo '*** Your folder is ...'
160	#echo '**********************'
161	#echo ${conf_wrf} \| tee what_folder
162	#cat what_folder
163	#echo ${conf_wrf} > what_folder
164	#echo ${reply} > what_compilo
165	#echo ${numproc} > what_numproc
166	if [[ "${phys}" != "nophys_" ]]
167	then
168	exit
169	fi
170	else
171	echo Number of tracers ? ; read tra
172	if [ ${tra} -eq 0 ]
173	then
174	tra=1
175	fi
176	if [[ "${phys}" == "newphys_" ]]
177	then
178	echo "How many types of scatterer are you using ? 1 [dust] or 2 [dust + water ice]" ; read scat
179	else
180	scat=1 ## dummy stuff
181	fi
182	fi
183	# folder
184	mkdir ${conf_wrf} 2> /dev/null
185	if [[ "$?" == 0 ]]
186	then
187	echo new folder ... link sources
188	if [[ "${phys}" == "newphys_" ]]
189	then
190	\rm copy_model_tmp > /dev/null 2> /dev/null
191	if [[ "${scenario}" == "" ]]
192	then
193	sed s+"mars_lmd"+"mars_lmd_new"+g SRC/SCRIPTS/copy_model > copy_model_tmp
194	else
195	echo SCENARIO ${scenario} DID YOU INCLUDE THE SPECIFIC folder ? ; read dummy
196	sed s+"mars_lmd"+"mars_lmd_new_${scenario}"+g SRC/SCRIPTS/copy_model > copy_model_tmp
197	if [[ "${config}" == "les" ]]
198	then
199	echo "NOT SUPPORTED, check options"
200	exit
201	fi
202	fi
203	if [[ "${config}" == "les" ]]
204	then
205	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g copy_model_tmp > yeah
206	mv yeah copy_model_tmp
207	fi
208	chmod 755 copy_model_tmp
209	./copy_model_tmp
210	\rm copy_model_tmp
211	mv zeWRFV2 ${conf_wrf}/WRFV2
212	cd ${conf_wrf}/WRFV2
213	if [[ "${scenario}" == "" ]]
214	then
215	ln -sf mars_lmd_new mars_lmd
216	else
217	ln -sf mars_lmd_new_${scenario} mars_lmd
218	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/Registry.EM mars_lmd_new_${scenario}/
219	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/*.inc mars_lmd_new_${scenario}/
220	cd Registry ; ln -sf ../mars_lmd_new_${scenario}/Registry.EM . ; cd ..
221	fi
222	#ln -sf meso_callkeys_newphys.h meso_callkeys.h
223	cd Registry ; Registry.bash ; cd ..
224	else
225	if [[ "${config}" == "les" ]]
226	then
227	### NB: With physics: LES folder // Without physics : LESnophys_ folder
228	### ---- because differences in 'modif' folder ----
229	sed s+"PWD/SRC/"+"PWD/SRC/LES$phys/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
230	else
231	cp SRC/SCRIPTS/copy_model copy_model_tmp
232	fi
233	chmod 755 copy_model_tmp
234	./copy_model_tmp
235	\rm copy_model_tmp
236	mv zeWRFV2 ${conf_wrf}/WRFV2
237	cd ${conf_wrf}/WRFV2
238	cd Registry ; Registry.bash ; cd ..
239	fi
240	#### sparadrap consequent a l'utilisation de copy_model pour les liens
241	#### -- car alors il manque fftpack
242	if [[ "${config}" == "les" ]]
243	then
244	if [[ "${phys}" == "nophys_" ]]
245	then
246	## voir ci-dessus pour le folder
247	cp ../../SRC/LES$phys/correcfft ./
248	else
249	cp ../../SRC/LES/correcfft ./
250	fi
251	./correcfft
252	\rm correcfft
253	fi
254	else
255	cd ${conf_wrf}/WRFV2
256	if [ ${fresh_start} -eq 1 ]
257	then
258	echo '*** FRESH START, I clean everything'
259	clean -a > /dev/null 2> /dev/null
260	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
261	# answer='y' ## a voir... pas si sur
262	# else
263	# if [[ "${phys}" != "nophys_" ]]
264	# then
265	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
266	# case ${answer} in
267	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
268	# *) answer='no' ;;
269	# esac
270	# fi
271	fi
272	fi
273
274	# summary
275	echo '**********************'
276	echo '*** Your folder is ...'
277	echo '**********************'
278	echo ${conf_wrf}
279	echo '**********************'
280	echo '****************************************'
281	echo so ...
282	echo your computer is ${machine} bits
283	echo ${compilo} is your compiler
284	if [[ "${compilo}" = "mpi" ]]
285	then
286	echo MPICH is in ${WHERE_MPI}
287	fi
288	echo you will use ${numproc} processors
289	echo you have ${lon} x points
290	echo ' '${lat} y points
291	echo ' '${level} z points
292	echo ' '${dom} domains
293	echo ' '${tra} tracers
294	if [[ "${phys}" == "newphys_" ]]
295	then
296	echo ' '${scat} scatterers
297	fi
298	echo '****************************************'
299	# save answer
300	\rm last 2> /dev/null
301	touch last
302	echo ${reply} >> last
303	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
304	then
305	echo ${numproc} >> last
306	fi
307	echo ${lon} >> last
308	echo ${lat} >> last
309	echo ${level} >> last
310	echo ${dom} >> last
311	echo ${tra} >> last
312	echo ${scat} >> last
313	#echo ${answer} >> last
314
315	#------------
316	# log files
317	#------------
318	\rm log_compile 2> /dev/null
319	\rm log_error 2> /dev/null
320
321	#-----------------
322	# configure WRF
323	#-----------------
324	mv configure.wrf configure.wrf.bak 2> /dev/null
325	########################
326	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
327
328	#### in this case options are different because for LES, WRFV3 is used
329	if [[ "${config}" == "les" ]]
330	then
331	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
332	fi
333
334	case ${conf_wrf_forall} in
335
336	#######LES-specific (WRFV3-based) -- previously in 'makeles'
337	#######
338
339	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
340	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
341	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
342	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
343	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
344	then
345	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
346	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
347	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
348	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
349	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
350	else
351	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
352	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
353	fi
354	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
355	### pas forcement necessaire ici mais OK
356	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
357	\rm conf > /dev/null ;;
358
359	lesmpifort_64) ## MPI (dm) 64 bits IFORT
360	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
361	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
362	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
363	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
364	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
365	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
366	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
367	\rm conf > /dev/null ;;
368
369	#######
370	#######LES-specific (WRFV3-based) -- previously in 'makeles'
371
372	#######TEST TEST
373	# GFORTRAN, 64 bits, no nesting
374	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
375	echo 15 \| configure > log_compile 2> log_error
376	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
377	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
378	#######TEST TEST
379	# PGF90, 32 bits, no nesting
380	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
381	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
382	# PGF90, 32 bits, nesting
383	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
384	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
385	# PGF90, 64 bits, no nesting
386	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
387	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
388	# PGF90, 64 bits, nesting
389	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
390	echo 4 \| configure > log_compile 2> log_error
391	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
392	# G95, 32 bits, no nesting
393	g95_32_single) echo 13 \| configure > log_compile 2> log_error
394	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
395	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
396	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
397	echo 14 \| configure > log_compile 2> log_error
398	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
399	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
400	# IFORT, 64 bits, no nesting
401	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
402	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
403	## !!! NETCDF must be defined
404	sed s+"lio_grib_share"+"lio_grib_share -L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
405	mv -f yeah configure.wrf ;;
406	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
407	echo 9 \| configure > log_compile 2> log_error
408	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
409	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
410	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
411	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
412	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
413	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
414	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
415	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
416	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
417	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
418	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
419	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
420	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
421	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
422	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
423	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
424	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
425	### necessary even if mpi-selector is used (no need in makegcm though)
426	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
427	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
428	## !!! NETCDF must be defined
429	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
430	mv -f yeah configure.wrf
431	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
432	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
433	mv -f yeah configure.wrf ;;
434	# MPICH, 64 bits, no nesting / nesting
435	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
436	echo 3 \| configure > log_compile 2> log_error
437	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
438	### the following line is necessary because readtesassim has a line "use netcdf" in it!
439	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
440	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
441	#\| sed s+"fastsse"+"fast"+g > yeah
442	mv -f yeah configure.wrf ;;
443	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
444	##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
445	##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
446	#mv -f yeah configure.wrf ;;
447	# MPICH, 64 bits, OK with periodic BC but no positive definite
448	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
449	echo 2 \| configure > log_compile 2> log_error
450	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
451	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
452	mv -f yeah configure.wrf ;;
453	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
454	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
455	echo 3 \| configure > log_compile 2> log_error
456	sed -f mars.sed configure.wrf > yeah
457	mv -f yeah configure.wrf ;;
458	# ANYTHING ELSE
459	*) echo NO PRESETS ...
460	if [ ${donotallow} -eq 0 ]
461	then
462	configure
463	else
464	# problem when an input file is used
465	echo 'please cd to '$PWD' and type ./configure'
466	exit
467	fi ;;
468	esac
469	########################
470
471
472	### here a case structure would be great
473
474	if [[ "${phys}" == "newphys_" ]]
475	then
476	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
477	then
478	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
479	else
480	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
481	fi
482	mv -f yeah configure.wrf
483	fi
484
485	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment
486	then
487	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
488	mv -f yeah configure.wrf
489	fi
490
491	################
492	if [[ "${phys}" == "nophys_" ]]
493	then
494	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
495	then
496	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
497	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
498	else
499	### not tested yet but should be working
500	echo CAUTION CAUTION CAUTION NOT FULLY TESTED
501	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
502	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
503	fi
504	fi
505	################
506
507	if [ ${debug} -ne 0 ] # not working for xlf!
508	then
509	echo 'DEBUG DEBUG DEBUG DEBUG'
510	sed s+"#-g"+"-g"+g configure.wrf > yeah
511	mv -f yeah configure.wrf
512	fi
513
514
515	##################################################
516	# compile physics
517	##################################################
518	if [ ${donotcompilephys} -eq 0 ]
519	then
520
521	cd mars_lmd/
522
523	# required size
524	#----------------
525	case ${numproc} in
526	1) divx=1 ; divy=1 ;;
527	2) divx=1 ; divy=2 ;;
528	4) divx=2 ; divy=2 ;;
529	6) divx=2 ; divy=3 ;;
530	8) divx=2 ; divy=4 ;;
531	12) divx=3 ; divy=4 ;;
532	16) divx=4 ; divy=4 ;;
533	20) divx=4 ; divy=5 ;;
534	24) divx=4 ; divy=6 ;;
535	32) divx=4 ; divy=8 ;;
536	64) divx=8 ; divy=8 ;;
537	128) divx=8 ; divy=16 ;;
538	*) echo not yet supported ; exit ;;
539	esac
540	physx=$(expr ${lon} - 1)
541	restex=$(expr ${physx} \% ${divx})
542	physy=$(expr ${lat} - 1)
543	restey=$(expr ${physy} \% ${divy})
544	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
545	then
546	echo nx-1 shall be divided by ${divx}
547	echo ny-1 shall be divided by ${divy}
548	exit
549	fi
550	physx=$(expr ${physx} \/ ${divx})
551	physy=$(expr ${physy} \/ ${divy})
552	physz=$(expr ${level} - 1)
553
554	# change this if you change num_soil_layers in WRF
555	# -- default is 10
556	if [[ "${phys}" == "newphys_" ]]
557	then
558	soilsize=18 ## nouvelle physique
559	else
560	soilsize=10
561	fi
562
563	# GCM environment variables
564	#--------------------------
565	export LMDGCM=$PWD
566	export LIBOGCM=$PWD/libo
567
568	# generate the appropriate dimphys
569	#---------------------------------
570	cd libf/phymars
571	\rm dimphys.h 2> /dev/null
572	if [[ "${phys}" == "newphys_" ]]
573	then
574	ln -sf meso_inc/meso_dimphys.h_ref .
575	fi
576	physize=$(expr ${physx} \* ${physy})
577	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
578	head -15 dimphys.h
579	### TEST new new phys
580	if [[ "${phys}" == "newphys_" ]]
581	then
582	touch gr_fi_dyn.F.lien
583	ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
584	###############################
585	\rm scatterers.h
586	cat << EOF > scatterers.h
587	!-----------------------------------------------------------------------
588	! INCLUDE 'scatterers.h'
589	!
590	! Number of kind of tracer radiative properties
591	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
592	! (ex: naerkind=1 if you use one dust mode without ice ...)
593	! (ex: naerkind=2 if you use one dust mode and active ice ...)
594	!-----------------------------------------------------------------------
595
596	integer, parameter :: naerkind=${scat}
597
598	!-----------------------------------------------------------------------
599	EOF
600	###############################
601	###############################
602	fi
603	###
604	###
605	cd ../..
606
607	# prepare for nesting
608	#---------------------
609	cd libf
610	duplicate${dom} 2> /dev/null
611	cd ..
612
613	# compile physics
614	#--------------------------
615	\rm libf/grid/dimensions.h 2> /dev/null
616	\rm -rf libo/* 2> /dev/null
617	echo 1. compiling LMD physics ...
618	echo compilation info in:
619	echo $PWD/libo/log_compile_phys
620
621	if [ ${debug} -ne 0 ]
622	then
623	echo 'DEBUG DEBUG DEBUG DEBUG'
624	nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
625	else
626	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
627	fi
628	echo ... done
629	# clean the duplicate routines
630	cd libf
631	duplicate1 2> /dev/null
632	cd ..
633
634	# merge LMD executables in one lib
635	#--------------------------------------
636	cd libo
637	mkdir temp
638	#cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp
639	cp -f LINUX/.a temp
640	cd temp
641	ar x libbibio.a
642	ar x libphymars.a
643	ar x libaeronomars.a
644	\rm *.a
645	ar r liblmd.a *
646	cp -f liblmd.a ..
647	cd ..
648	\rm -r temp
649	nm liblmd.a > liblmd_content
650	# finish merge
651	cd ..
652
653	# save a copy
654	#--------------
655	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}_${scat}
656	echo '****************************************'
657
658	# ok
659	#----
660	cd ..
661
662	# manage nest includes in module_lmd_driver.F
663	#----
664	cp call_meso_inifis$dom.inc call_meso_inifis.inc
665	cp call_meso_physiq$dom.inc call_meso_physiq.inc
666
667
668	fi
669	##################################################
670	# END compile physics
671	##################################################
672
673	#------------------
674	# compile WRF
675	#------------------
676	if [ ${justphys} -eq 0 ]
677	then
678
679	echo 2. compiling WRF dynamical core ...
680
681	if [[ "${phys}" == "nophys_" ]]
682	then
683	echo 'NO LMD PHYSICS included'
684	else
685	if [[ ! ( -f "call_meso_physiq.inc" ) ]]
686	then
687	echo 'did you compile the physics ? no call_meso_physiq.inc !'
688	exit
689	fi
690	fi
691
692	# be sure to compile with the most recent physics
693	touch phys/module_lmd_driver.F
694
695	# talk to user
696	echo '>>> compiling ... this may be long ... <<<'
697	echo check progress in:
698	echo $PWD/log_compile
699	echo check possible errors in:
700	echo $PWD/log_error
701
702	# compile ...
703	case ${config} in
704	'') compile em_real > log_compile 2> log_error
705	# save executables
706	cd main
707	if [[ -f real.exe ]]
708	then
709	echo 'Looks good ! real.exe is here...'
710	fi
711	if [[ -f wrf.exe ]]
712	then
713	echo 'Looks good ! wrf.exe is here...'
714	fi
715	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
716	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
717	cd .. ;;
718	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
719	echo '>>> YOUR CONFIG IS : '${config}
720	compile em_quarter_ss > log_compile 2> log_error
721	# save executables
722	cd main
723	if [[ -f ideal.exe ]]
724	then
725	echo 'Looks good ! ideal.exe is here...'
726	fi
727	if [[ -f wrf.exe ]]
728	then
729	echo 'Looks good ! wrf.exe is here...'
730	fi
731	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
732	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
733	cd .. ;;
734	'les') echo '>>> YOUR CONFIG IS : '${config}
735	mkdir 'test/em_les' 2> /dev/null
736	compile em_les > log_compile 2> log_error
737	# save executables
738	cd main
739	if [[ -f ideal.exe ]]
740	then
741	echo 'Looks good ! ideal.exe is here...'
742	fi
743	if [[ -f wrf.exe ]]
744	then
745	echo 'Looks good ! wrf.exe is here...'
746	fi
747	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
748	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
749	cd .. ;;
750	*) echo not supported... please use ; echo ideal les ; exit ;;
751	esac
752	echo '*****last lines from log_error*******'
753	tail -n 20 log_error
754	fi
755
756	# the end
757	echo '****************************************'
758	echo 'done.'
759	echo '****************************************'
760	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}
761	mv last ../../
762
763	# add here specific messages
764	if [[ "${dom}" != "1" ]]
765	then
766	nest=$(expr ${lon} + 4)
767	echo NB: in namelist.input, please set:
768	echo '
769	max_dom = '$dom'
770	s_we = 1,1,
771	e_we = '$lon','$nest',
772	s_sn = 1,1,
773	e_sn = '$lat','$nest',
774	s_vert = 1,1,
775	e_vert = '$level','$level','
776	fi
777

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