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makemeso @ 2087

Last change on this file since 2087 was 2058, checked in by jleconte, 7 years ago
on our way to compile mesoscale+generic with gfortran
Property svn:executable set to ``*
File size: 40.1 KB

Line
1	#! /bin/bash
2
3
4	##################################
5	# makemeso allows you to compile #
6	# WRF with modified LMD physics #
7	##################################
8
9	##############################
10	# Author: A. Spiga #
11	# New version : October 2008 #
12	# Last update : January 2009 #
13	# November 09 #
14	# January 11 #
15	##############################
16
17	###############################
18	#### Type makemeso -h for help
19	###############################
20
21	###path to compiled version of ioipsl on your system for generic physics
22	pathioipsl='/home/leconte/script/ioipsl/modipsl/lib'
23
24	##############################################################################################
25	##############################################################################################
26	##############################################################################################
27	##############################################################################################
28
29	donotcompile=0
30	donotallow=0
31	config='real'
32	donotcompilephys=0
33	justphys=0
34	debug=0
35	fresh_start=0
36	phys="mars_lmd"
37	scenario=""
38	from_scratch=0
39
40	while getopts "drc:njhgp:fs:xe" options; do
41	case $options in
42	d ) donotcompile=1;; ## just to check the compile folder
43	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
44	c ) config="${OPTARG}";; ## idealized cases
45	n ) donotcompilephys=1;; ## do not recompile physics
46	j ) justphys=1;; ## just compile LMD physics
47	g ) debug=1;; ## debug mode
48	p ) phys="${OPTARG}";; ## choose physics
49	f ) fresh_start=1;; ## a fresh start
50	e ) from_scratch=1;; ## a fresh start with a completely new folder
51	s ) scenario="${OPTARG}";; ## a specific scenario (with precompiling flags)
52	x ) donotcompile=1;phys="void_lmd_new";donotcompilephys=1;; ## a case with no LMD physics included
53	h ) echo "
54	# Use:
55	#
56	# makemeso ## basic use (real-case configuration)
57	#
58	# makemeso -d ## no compilation, just check the name of the compile folder
59	#
60	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
61	# makemeso -c les ## large-eddy simulations mode based on WRFV3
62	#
63	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
64	#
65	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
66	# makemeso -r < last ## basic use + skip questions + only known config
67	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
68	#
69	# makemeso -j ## just compile the LMD physics
70	#
71	# makemeso -g ## debug mode
72	#
73	# makemeso -h ## display options
74	#
75	# makemeso -p mars_lmd_new ## choose physics
76	# venus_lmd_new
77	# generic_lmd_new
78	#
79	# makemeso -f ## fresh start [clean -a]
80	#
81	# makemeso -e ## a completely new recompile with erasing the WHOLE compiling folder
82	#
83	# makemeso -s DUSTSTORM ## a specific scenario (with precompiling flags)
84	#
85	# makemeso -x ## a case with no LMD physics included
86	" ; exit ;;
87	esac
88	done
89
90	#--------------
91	# talk w/ user
92	#--------------
93	echo '****************************************'
94	echo ' LMD Mesoscale Model Compiler. Welcome.'
95	echo '****************************************'
96	if [[ "${phys}" == "new" ]]
97	then
98	echo '*********** PHYSICS: ' ${phys}
99	echo '****************************************'
100	fi
101	# computer
102	uname -a \| grep x86_64 > /dev/null
103	if [[ "$?" == 0 ]]
104	then
105	machine='64'
106	else
107	machine='32'
108	fi
109	# compiler
110	echo "Supported compiler options are "
111	echo " <1> pgf90"
112	echo " <2> g95"
113	echo " <3> pgf90 + mpi"
114	echo " <4> ifort"
115	echo " <5> ifort + mpi"
116	echo " <7> xlf + mpi (IBM AIX)"
117	echo " <8> gfortran"
118	echo "Your choice ?" ; read reply
119	case ${reply} in
120	1) compilo='pgf' ; numproc=1 ;;
121	2) compilo='g95' ; numproc=1 ;;
122	3) compilo='mpi'
123	if [[ "${WHERE_MPI}" = "" ]]
124	then
125	echo Please initialize the variable WHERE_MPI in your environnement
126	exit
127	fi ;;
128	4) compilo='ifort' ; numproc=1 ;;
129	5) compilo='mpifort' ;;
130	7) compilo='mpixlf' ;;
131	8) compilo='gnu' ; numproc=1 ;;
132	*) echo not supported by this script ; exit ;;
133	esac
134	# number of processors
135	if [[ "${phys}" == "new" ]]
136	then
137	numproc=999
138	else
139	case ${reply} in
140	3) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
141	5) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
142	7) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
143	esac
144	fi
145
146	# dimensions
147	if [ ${donotcompile} -eq 0 ]
148	then
149	# ngrid: now dynamically set in newphys 03/2014
150	if [[ "${phys}" == "new" ]]
151	then
152	lon=999
153	lat=999
154	level=999
155	else
156	echo Grid points in longitude ? ; read lon
157	echo Grid points in latitude ? ; read lat
158	echo Number of vertical levels ? ; read level
159	fi
160	fi
161	echo Number of domains ? ; read dom
162
163	###PB lecture dom si < last
164
165	case ${dom} in
166	1) single='_single' ;;
167	*) single='_nest' ;;
168	esac
169	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
170	then
171	single=''
172	fi
173
174	testflag=''
175	####
176	#testflag='_test'
177	####
178
179	conf_wrf="${phys}_${config}${scenario}_${compilo}_${machine}${single}${testflag}"
180
181	if [ ${debug} -eq 1 ]
182	then
183	conf_wrf="debug_${conf_wrf}"
184	fi
185
186	\rm what_folder 2> /dev/null
187	echo ${conf_wrf} > what_folder
188	if [ ${donotcompile} -eq 0 ]
189	then
190	##\rm what_folder 2> /dev/null
191	##echo '**********************'
192	##echo '*** Your folder is ...'
193	##echo '**********************'
194	##echo ${conf_wrf} \| tee what_folder
195	##cat what_folder
196	##echo ${conf_wrf} > what_folder
197	##echo ${reply} > what_compilo
198	##echo ${numproc} > what_numproc
199	#if [[ "${phys}" != "nophys_" ]]
200	#then
201	# exit
202	#fi
203	#else
204	# tracers: now dynamically set in newphys 09/2013
205	if [[ "${phys}" == "new" ]]
206	then
207	tra=999
208	else
209	echo Number of tracers ? ; read tra
210	if [ ${tra} -eq 0 ]
211	then
212	tra=1
213	fi
214	fi
215	fi
216	# 'from scratch' case
217	if [ ${from_scratch} -eq 1 ]
218	then
219	echo "***** I ERASE THE FOLDER "${conf_wrf}
220	\rm -rf ${conf_wrf}
221	fi
222	# folder
223
224	mkdir ${conf_wrf} 2> /dev/null
225	if [[ "$?" == 0 ]]
226	then
227	echo new folder ... link sources
228	###############################################
229	echo ${phys}
230	./SRC/SCRIPTS/copy_model -p ${phys} -c ${config}
231	mv zeWRFV2 ${conf_wrf}/WRFV2
232	###############################################
233	if [[ "${phys}" == "new" ]]
234	then
235	cd ${conf_wrf}/WRFV2
236	if [[ "${config}" != "les" ]]
237	then
238	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
239	else
240	cp -L ../../SRC/LES/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
241	fi
242	cd phys
243	ln -sf module_lmd_driver.F.new module_lmd_driver.F
244	cd ..
245
246	else
247	cd ${conf_wrf}/WRFV2
248	cd Registry ; ./Registry.bash ; cd ..
249	fi
250	#### sparadrap consequent a l'utilisation de copy_model pour les liens
251	#### -- car alors il manque fftpack
252	if [[ "${config}" == "les" ]]
253	then
254	cp ../../SRC/LES/correcfft ./
255	./correcfft
256	\rm correcfft
257	fi
258	else
259	cd ${conf_wrf}/WRFV2
260	if [ ${fresh_start} -eq 1 ]
261	then
262	echo '*** FRESH START, I clean everything'
263	### clean the whole place
264	clean -a > /dev/null 2> /dev/null
265	### get a possibly modified registry !
266	if [[ "${phys}" == "new" ]]
267	then
268	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
269	else
270	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
271	fi
272	if [[ "${config}" == "les" ]]
273	then
274	cp ../../SRC/LES/WRFV2/Registry/Registry.EM Registry/
275	fi
276	### ensure the model will be recompiled from scratch with correct registry
277	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
278	# answer='y' ## a voir... pas si sur
279	# else
280	# if [[ "${phys}" != "nophys_" ]]
281	# then
282	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
283	# case ${answer} in
284	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
285	# *) answer='no' ;;
286	# esac
287	# fi
288	fi
289	fi
290
291	# summary
292	echo '**********************'
293	echo '*** Your folder is ...'
294	echo '**********************'
295	echo ${conf_wrf}
296	echo '**********************'
297	echo '****************************************'
298	echo so ...
299	echo your computer is ${machine} bits
300	echo ${compilo} is your compiler
301	if [[ "${compilo}" = "mpi" ]]
302	then
303	echo MPICH is in ${WHERE_MPI}
304	fi
305	echo you have ${dom} domains
306	if [[ "${phys}" == "new" ]]
307	then
308	echo number of processors can be changed without recompiling
309	echo x points can be changed without recompiling
310	echo y points can be changed without recompiling
311	echo z points can be changed without recompiling
312	echo number of tracers can be changed without recompiling
313	else
314	echo you will use ${numproc} processors
315	echo you have ${lon} x points
316	echo ' '${lat} y points
317	echo ' '${level} z points
318	echo ' '${tra} tracers
319	fi
320	echo '****************************************'
321	# save answer
322	\rm last 2> /dev/null
323	touch last
324	echo ${reply} >> last
325	if [[ "${phys}" != "new" ]]
326	then
327	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
328	then
329	echo ${numproc} >> last
330	fi
331	echo ${lon} >> last
332	echo ${lat} >> last
333	echo ${level} >> last
334	fi
335	echo ${dom} >> last
336	if [[ "${phys}" != *"new" ]]
337	then
338	echo ${tra} >> last
339	fi
340
341	#------------
342	# log files
343	#------------
344	\rm log_compile 2> /dev/null
345	\rm log_error 2> /dev/null
346
347	#-----------------
348	# configure WRF
349	#-----------------
350	mv configure.wrf configure.wrf.bak 2> /dev/null
351	########################
352	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
353
354	#### in this case options are different because for LES, WRFV3 is used
355	if [[ "${config}" == "les" ]]
356	then
357	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
358	fi
359
360	case ${conf_wrf_forall} in
361
362	#######LES-specific (WRFV3-based) -- previously in 'makeles'
363	#######
364
365	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
366	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
367	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
368	sed s+"-lnetcdf"+"-lnetcdf -L../$phys/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
369	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
370	then
371	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
372	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
373	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
374	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
375	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
376	else
377	#sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
378	#sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
379	#### OPENMPI
380	sed s+"mpif90 -f90=\$(SFC)"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
381	sed s+"mpicc -cc=\$(SCC)"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
382	fi
383	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
384	### pas forcement necessaire ici mais OK
385	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
386	\rm conf > /dev/null ;;
387
388	lesmpifort_64) ## MPI (dm) 64 bits IFORT
389	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
390	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
391	if [[ "${phys}" != "void" ]]
392	then
393	sed s+"-lnetcdff"+"TOZTOZ"+g configure.wrf > yeah ; mv -f yeah configure.wrf
394	# ... in case there is netcdff save it in TOZTOZ so that it is not impacted in the following sed
395	sed s+"-lnetcdf"+"-lnetcdf -L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
396	sed s+"TOZTOZ"+"-lnetcdff"+g configure.wrf > yeah ; mv -f yeah configure.wrf
397	else
398	sed s+"-lnetcdf"+"-lnetcdf $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
399	fi
400	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
401	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
402	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
403	sed s+"O3"+"O3 -mcmodel=large -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
404	#sed s+"-lnetcdf -lnetcdff"+"-lnetcdf -lnetcdff -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
405	if [ ${debug} -ne 0 ] # not working for xlf!
406	then
407	echo 'DEBUG DEBUG DEBUG DEBUG'
408	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
409	mv -f yeah configure.wrf
410	fi
411	\rm conf > /dev/null ;;
412
413	#######
414	#######LES-specific (WRFV3-based) -- previously in 'makeles'
415
416	# GFORTRAN, 64 bits, no nesting
417	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
418	echo 15 \| configure > log_compile 2> log_error
419	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
420	sed s+"-L../$phys/libo -llmd"+"-lnetcdf -lnetcdff -L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a -lnetcdf"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
421	# PGF90, 32 bits, no nesting
422	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
423	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
424	# PGF90, 32 bits, nesting
425	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
426	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
427	# PGF90, 64 bits, no nesting
428	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
429	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
430	#sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
431	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
432	# PGF90, 64 bits, nesting
433	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
434	echo 4 \| configure > log_compile 2> log_error
435	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
436	# G95, 32 bits, no nesting
437	g95_32_single) echo 13 \| configure > log_compile 2> log_error
438	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
439	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
440	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
441	echo 14 \| configure > log_compile 2> log_error
442	##### marche pas ....
443	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
444	#sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
445	#sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
446	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
447	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
448	# IFORT, 64 bits, no nesting
449	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
450	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
451	if [ ${debug} -ne 0 ] # not working for xlf!
452	then
453	echo 'DEBUG DEBUG DEBUG DEBUG'
454	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
455	mv -f yeah configure.wrf
456	fi
457	## !!! NETCDF must be defined
458	sed s+"lio_grib_share"+"lio_grib_share -L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
459	mv -f yeah configure.wrf ;;
460	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
461	echo 9 \| ./configure > log_compile 2> log_error
462	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
463	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
464	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
465	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
466	sed s+"-O1"+"-O1 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
467	sed s+"-O2"+"-O2 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
468	sed s+"-O3"+"-O3 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
469	if [ ${debug} -ne 0 ] # not working for xlf!
470	then
471	echo 'DEBUG DEBUG DEBUG DEBUG'
472	sed s+"#-g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
473	mv -f yeah configure.wrf
474	fi
475	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
476	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
477	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
478	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
479	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
480	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
481	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
482	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
483	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
484	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
485	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
486	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
487	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
488	### necessary even if mpi-selector is used (no need in makegcm though)
489	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
490	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
491	## !!! NETCDF must be defined
492	if [[ "${phys}" != "void" ]]
493	then
494	sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
495	else
496	sed s+"-lesmf_time"+"-lesmf_time $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
497	fi
498	mv -f yeah configure.wrf
499	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
500	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
501	mv -f yeah configure.wrf ;;
502	# MPICH, 64 bits, no nesting / nesting
503	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
504	echo 3 \| configure > log_compile 2> log_error
505	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
506	### the following line is necessary because readtesassim has a line "use netcdf" in it!
507	sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
508	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
509	#sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT -w -O3"+g > yeah
510	#\| sed s+"fastsse"+"fast"+g > yeah
511	mv -f yeah configure.wrf ;;
512	# #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
513	# ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
514	# ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
515	#sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah
516	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
517	#sed s+"-fastsse"+""+g configure.wrf > yeah
518	#sed s+"-fastsse"+"-fast"+g configure.wrf > yeah
519	#sed s+"-fastsse"+"-Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8 -Mfprelaxed"+g configure.wrf > yeah
520	#mv -f yeah configure.wrf ;;
521	# MPICH, 64 bits, OK with periodic BC but no positive definite
522	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
523	echo 2 \| configure > log_compile 2> log_error
524	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
525	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
526	mv -f yeah configure.wrf ;;
527	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
528	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
529	echo 3 \| configure > log_compile 2> log_error
530	sed -f physics.sed configure.wrf > yeah
531	mv -f yeah configure.wrf ;;
532	# ANYTHING ELSE
533	*) echo NO PRESETS ...
534	if [ ${donotallow} -eq 0 ]
535	then
536	configure
537	else
538	# problem when an input file is used
539	echo 'please cd to '$PWD' and type ./configure'
540	exit
541	fi ;;
542	esac
543	########################
544
545
546	### here a case structure would be great
547
548	if [[ "${phys}" == "new" ]]
549	then
550	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
551	then
552	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
553	else
554	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
555	fi
556	mv -f yeah configure.wrf
557	fi
558
559	### SCENARIO SCENARIO SCENARIO
560	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment?
561	then
562	# precompiling flag in WRF part
563	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
564	mv -f yeah configure.wrf
565	# precompiling flag in LMD part
566	cd $phys
567	cp -Lrf makegcm_${compilo} yeah
568	\rm makegcm_${compilo}
569	sed s+"-DMESOSCALE"+"-D${scenario} -DMESOSCALE"+ yeah > makegcm_${compilo}
570	chmod 755 makegcm_${compilo}
571	\rm yeah
572	cd ..
573	fi
574
575	################
576	#if [[ "${phys}" == "nophys_" ]]
577	#then
578	# if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
579	# then
580	# sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
581	# sed s+"-L../$phys/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
582	# else
583	# ### not tested yet but should be working
584	# echo CAUTION CAUTION CAUTION NOT FULLY TESTED
585	# sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
586	# sed s+"-L../$phys/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
587	# fi
588	#fi
589	################
590
591	if [[ "${phys}" == "venus" ]]
592	then
593	sed s+"LIB_BUNDLED = "+"LIB_BUNDLED = /usr/lib64/liblapack.so \ "+g configure.wrf > yeah ; mv -f yeah configure.wrf
594	fi
595
596	if [ ${debug} -ne 0 ] # not working for xlf!
597	then
598	echo 'DEBUG DEBUG DEBUG DEBUG'
599	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
600	#sed s+"# -g"+"-g -Ktrap=fp -Mbounds"+g configure.wrf > yeah
601	#sed s+"# -g"+"-g"+g configure.wrf > yeah
602	mv -f yeah configure.wrf
603	fi
604
605	if [[ "${phys}" == "prescribed" ]]
606	then
607	donotcompilephys=1
608	fi
609
610	# some compiler and environment mess things up when using -C
611	sed s+"-C"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
612
613	#exit
614	##################################################
615	# compile physics
616	##################################################
617	if [ ${donotcompilephys} -eq 0 ] #\|\| [[ "${phys}" != "prescribed" ]]
618	then
619
620	cd $phys/
621
622	if [[ "${phys}" == "new" ]]
623	then
624	divx=1
625	divy=1
626	else
627	# required size
628	#----------------
629	case ${numproc} in
630	1) divx=1 ; divy=1 ;;
631	2) divx=1 ; divy=2 ;;
632	4) divx=2 ; divy=2 ;;
633	6) divx=2 ; divy=3 ;;
634	8) divx=2 ; divy=4 ;;
635	12) divx=3 ; divy=4 ;;
636	16) divx=4 ; divy=4 ;;
637	20) divx=4 ; divy=5 ;;
638	24) divx=4 ; divy=6 ;;
639	32) divx=4 ; divy=8 ;;
640	64) divx=8 ; divy=8 ;;
641	128) divx=8 ; divy=16 ;;
642	*) echo not yet supported ; exit ;;
643	esac
644	fi
645	physx=$(expr ${lon} - 1)
646	restex=$(expr ${physx} \% ${divx})
647	physy=$(expr ${lat} - 1)
648	restey=$(expr ${physy} \% ${divy})
649	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
650	then
651	echo nx-1 shall be divided by ${divx}
652	echo ny-1 shall be divided by ${divy}
653	exit
654	fi
655	physx=$(expr ${physx} \/ ${divx})
656	physy=$(expr ${physy} \/ ${divy})
657	physz=$(expr ${level} - 1)
658
659	# change this if you change num_soil_layers in WRF
660	# -- default is 10
661	if [[ "${phys}" == "new" ]]
662	then
663	soilsize=18 ## nouvelle physique. ne sert a rien ici. voir comsoil.
664	else
665	soilsize=10
666	fi
667
668	# GCM environment variables
669	#--------------------------
670	export LMDGCM=$PWD
671	export LIBOGCM=$PWD/libo
672
673	# generate the appropriate dimphys
674	#---------------------------------
675	if [[ "${phys}" == "mars" ]]
676	then
677	cd libf/phymars
678	elif [[ "${phys}" == "venus" ]]
679	then
680	cd libf/phyvenus
681	elif [[ "${phys}" == "generic" ]]
682	then
683	cd libf/phystd
684	fi
685	\rm dimphys.h 2> /dev/null
686	# if [[ "${phys}" == "newphys_" ]]
687	# then
688	# ln -sf ../../meso_dimphys.h_ref . ## ne sert plus !!
689	# else
690	if [[ "${phys}" == "mars_lmd" ]]
691	then
692	physize=$(expr ${physx} \* ${physy})
693	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
694	head -15 dimphys.h
695	fi
696	#### TEST new new phys
697	#if [[ "${phys}" == "newphys_" ]]
698	#then
699	# touch gr_fi_dyn.F.lien
700	# ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
701	################################
702	################################
703	################################
704	#fi
705	####
706	####
707	cd ../..
708
709	# prepare for nesting
710	#---------------------
711	cd libf
712	duplicate${dom} 2> /dev/null
713	cd ..
714
715	# compile physics
716	#--------------------------
717	\rm libf/grid/dimensions.h 2> /dev/null
718	\rm -rf libo/* 2> /dev/null
719	echo 1. compiling LMD physics ...
720	echo compilation info in:
721	echo $PWD/libo/log_compile_phys
722
723	if [ ${debug} -ne 0 ]
724	then
725	if [[ "${phys}" == "mars" ]]
726	then
727	echo 'DEBUG DEBUG DEBUG DEBUG'
728	nohup makegcm_${compilo} -debug -full -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
729	elif [[ "${phys}" == "venus" ]]
730	then
731	echo 'DEBUG DEBUG DEBUG DEBUG'
732	nohup ./makelmdz -debug -full -p venus -d 51 rcm1d -arch linux-ifort -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys # on /u/ and /planeto/
733	nohup ./makelmdz --debug p venus -d 51 rcm1d -arch linux-ifort -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
734	elif [[ "${phys}" == "generic" ]]
735	then
736	echo 'DEBUG DEBUG DEBUG DEBUG'
737	nohup ./makelmdz -debug -t ${tra} -p std -b 36x32 -s 1 -d 25 rcm1d -arch X64_MESU -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys #Proxb
738	fi
739	else
740	if [[ "${phys}" == "mars" ]]
741	then
742	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
743	elif [[ "${phys}" == "venus" ]]
744	then
745	nohup ./makelmdz -full -p venus -d 51 rcm1d -arch linux-ifort_meso -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys # on /u/ and /planeto/
746	nohup ./makelmdz -p venus -d 51 rcm1d -arch linux-ifort_meso -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
747	#nohup ./makelmdz -full -p venus -d 51 rcm1d -arch CICLADifort -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys # on CICLAD
748	#nohup ./makelmdz -p venus -d 51 rcm1d -arch CICLADifort -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
749	#nohup ./makelmdz -full -p venus -d 51 rcm1d -arch X64_MESU -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys #on MESU
750	#nohup ./makelmdz -p venus -d 51 rcm1d -arch X64_MESU -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
751	#nohup makelmdz -full -p venus -d 51 rcm1d -arch X64_OCCIGEN -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys #on OCCIGEN
752	#nohup makelmdz -p venus -d 51 rcm1d -arch X64_OCCIGEN -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
753	elif [[ "${phys}" == "generic" ]]
754	then
755	nohup ./makelmdz -t 1 -p std -b 38x36 -full -s 1 -d 25 rcm1d -arch mascaret_gfortran_para -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys #Proxb
756	nohup ./makelmdz -t 1 -p std -b 38x36 -s 1 -d 25 rcm1d -arch mascaret_gfortran_para -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys #Proxb
757	fi
758	fi
759	echo ... done
760	# clean the duplicate routines
761	cd libf
762	duplicate1 2> /dev/null
763	cd ..
764
765	# merge LMD executables in one lib
766	#--------------------------------------
767	cd libo
768	mkdir temp
769	if [[ "${phys}" == "mars" ]]
770	then
771	cp -f LINUX/.a temp
772	else #VENUS and GENERIC
773	# cp -f linux/.a temp/ # on /u/ and /planeto/
774	cp -f /.a temp/ # on /u/ and /planeto/
775	#cp -f /home/mlefevre/modipsl/lib/libioipsl.a temp/ #on CICLAD
776	#cp -f X64/.a temp #on MESU and OCCIGEN
777	cp -f $pathioipsl/libioipsl.a temp/
778	fi
779	cd temp
780	if [[ "${phys}" == "mars" ]]
781	then
782	ar x libbibio.a
783	ar x libphymars.a
784	ar x libaeronomars.a
785	elif [[ "${phys}" == "venus" ]]
786	then
787	ar x libphyvenus.a
788	ar x libmisc.a
789	ar x libphy_common.a
790	ar x libioipsl.a
791	elif [[ "${phys}" == "generic" ]]
792	then
793	ar x libphystd.a
794	ar x libmisc.a
795	ar x libphy_common.a
796	ar x libioipsl.a
797	fi
798	\rm *.a
799	ar r liblmd.a *
800	cp -f liblmd.a ..
801	cd ..
802	\rm -r temp
803	nm liblmd.a > liblmd_content
804	# finish merge
805	cd ..
806	if [[ "${phys}" == "new" ]]
807	then
808	if [[ "${phys}" == "mars" ]]
809	then
810	# include modules for interfacing
811	mv *.mod ../inc/
812	else
813	# mv ./libo/linux/.mod ../inc/ # on /u/ and /planeto/
814	mv ./libo//.mod ../inc/ # on /u/ and /planeto/
815	#mv ./libo/CICLAD/.mod ../inc/ # on CICLAD
816	#mv ./libo/X64/.mod ../inc/ # on MESU and OCCIGEN
817	cp -f $pathioipsl/*.mod ../inc/
818	fi
819	fi
820
821
822	# save a copy
823	#--------------
824	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}
825	echo '****************************************'
826
827	# ok
828	#----
829	cd ..
830
831	# manage nest includes in module_lmd_driver.F
832	#----
833	cp call_meso_inifis$dom.inc call_meso_inifis.inc
834	cp call_meso_physiq$dom.inc call_meso_physiq.inc
835
836
837	fi
838	##################################################
839	# END compile physics
840	##################################################
841
842	#------------------
843	# compile WRF
844	#------------------
845	if [ ${justphys} -eq 0 ]
846	then
847
848	echo 2. compiling WRF dynamical core ...
849
850	#if [[ "${phys}" == "nophys_" ]]
851	#then
852	# echo 'NO LMD PHYSICS included'
853	#else
854	# if [[ ! ( -f "call_meso_physiq.inc" ) ]]
855	# then
856	# echo 'did you compile the physics ? no call_meso_physiq.inc !'
857	# exit
858	# fi
859	#fi
860
861	# be sure to compile with the most recent physics
862	touch phys/module_lmd_driver.F
863
864	# talk to user
865	echo '>>> compiling ... this may be long ... <<<'
866	echo check progress in:
867	echo $PWD/log_compile
868	echo check possible errors in:
869	echo $PWD/log_error
870
871	# compile ...
872	echo '>>> YOUR CONFIG IS : '${config}
873	case ${config} in
874	'real') ./compile em_real > log_compile 2> log_error
875	# save executables
876	cd main
877	if [[ -f real.exe ]]
878	then
879	echo 'Looks good ! real.exe is here...'
880	fi
881	if [[ -f wrf.exe ]]
882	then
883	echo 'Looks good ! wrf.exe is here...'
884	fi
885	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
886	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
887	cd .. ;;
888	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
889	#echo '>>> YOUR CONFIG IS : '${config}
890	./compile em_quarter_ss > log_compile 2> log_error
891	# save executables
892	cd main
893	if [[ -f ideal.exe ]]
894	then
895	echo 'Looks good ! ideal.exe is here...'
896	fi
897	if [[ -f wrf.exe ]]
898	then
899	echo 'Looks good ! wrf.exe is here...'
900	fi
901	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
902	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
903	cd .. ;;
904	'les') #echo '>>> YOUR CONFIG IS : '${config}
905	mkdir 'test/em_les' 2> /dev/null
906	./compile em_les > log_compile 2> log_error
907	# save executables
908	cd main
909	if [[ -f ideal.exe ]]
910	then
911	echo 'Looks good ! ideal.exe is here...'
912	fi
913	if [[ -f wrf.exe ]]
914	then
915	echo 'Looks good ! wrf.exe is here...'
916	fi
917	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
918	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
919	cd .. ;;
920	*) echo not supported... please use ; echo ideal les ; exit ;;
921	esac
922	echo '*****last lines from log_error*******'
923	tail -n 20 log_error
924	fi
925
926	# the end
927	echo '****************************************'
928	echo 'done.'
929	echo '****************************************'
930	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}
931	mv last ../../
932	svn info ../../ > ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.svn.info
933
934	# link latest compiled folder as LATEST
935	cd ../../
936	rm -rf LATEST
937	ln -sf ${conf_wrf} LATEST
938
939	# link latest compiled exec
940	cd LATEST
941	case ${config} in
942	'real') ln -sf real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe real.exe ;;
943	'ideal') ln -sf ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe ideal.exe ;;
944	'les') ln -sf ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe ideal.exe ;;
945	esac
946	ln -sf wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe wrf.exe
947	cd ..
948
949	# add here specific messages
950	if [[ "${dom}" != "1" ]]
951	then
952	nest=$(expr ${lon} + 4)
953	echo NB: in namelist.input, please set:
954	echo '
955	max_dom = '$dom'
956	s_we = 1,1,
957	e_we = '$lon','$nest',
958	s_sn = 1,1,
959	e_sn = '$lat','$nest',
960	s_vert = 1,1,
961	e_vert = '$level','$level','
962	fi
963
964

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