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makemeso @ 200

Last change on this file since 200 was 167, checked in by aslmd, 13 years ago
MESOSCALE: correction makemeso (LES). ajout a README-svn. tests tempetes de poussiere avec JF.
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Line
1	#! /bin/bash
2
3
4	##################################
5	# makemeso allows you to compile #
6	# WRF with modified LMD physics #
7	##################################
8
9	##############################
10	# Author: A. Spiga #
11	# New version : October 2008 #
12	# Last update : January 2009 #
13	# November 09 #
14	# January 11 #
15	##############################
16
17	###############################
18	#### Type makemeso -h for help
19	###############################
20
21
22
23	##############################################################################################
24	##############################################################################################
25	##############################################################################################
26	##############################################################################################
27
28	donotcompile=0
29	donotallow=0
30	config=''
31	donotcompilephys=0
32	justphys=0
33	debug=0
34	fresh_start=0
35	phys=""
36	scenario=""
37	while getopts "drc:njhgpfs:x" options; do
38	case $options in
39	d ) donotcompile=1;; ## just to check the compile folder
40	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
41	c ) config="${OPTARG}";; ## idealized cases
42	n ) donotcompilephys=1;; ## do not recompile physics
43	j ) justphys=1;; ## just compile LMD physics
44	g ) debug=1;; ## debug mode
45	p ) phys="newphys_";; ## with new physics
46	f ) fresh_start=1;; ## a fresh start
47	s ) scenario="${OPTARG}";; ## a specific scenario, you need a corresponding "mars_lmd_..."
48	x ) donotcompile=1;phys="nophys_";donotcompilephys=1;; ## a case with no LMD physics included
49	h ) echo "
50	# Use:
51	#
52	# makemeso ## basic use (real-case configuration)
53	#
54	# makemeso -d ## no compilation, just check the name of the compile folder
55	#
56	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
57	# makemeso -c les ## large-eddy simulations mode based on WRFV3
58	#
59	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
60	#
61	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
62	# makemeso -r < last ## basic use + skip questions + only known config
63	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
64	#
65	# makemeso -j ## just compile the LMD physics
66	#
67	# makemeso -g ## debug mode
68	#
69	# makemeso -h ## display options
70	#
71	# makemeso -p ## with new LMD physics
72	#
73	# makemeso -f ## fresh start [clean -a]
74	#
75	# makemeso -s storm ## a specific scenario, you need a corresponding mars_lmd_... (only for newphys)
76	#
77	# makemeso -x ## a case with no LMD physics included
78	" ; exit ;;
79	esac
80	done
81
82	#--------------
83	# talk w/ user
84	#--------------
85	echo '****************************************'
86	echo ' LMD Mesoscale Model Compiler. Welcome.'
87	echo '****************************************'
88	if [[ "${phys}" == "newphys_" ]]
89	then
90	echo '*********with new physics***********'
91	echo '****************************************'
92	fi
93	# computer
94	uname -a \| grep x86_64 > /dev/null
95	if [[ "$?" == 0 ]]
96	then
97	machine='64'
98	else
99	machine='32'
100	fi
101	# compiler
102	echo "Supported compiler options are "
103	echo " <1> pgf90"
104	echo " <2> g95"
105	echo " <3> pgf90 + mpi"
106	echo " <4> ifort"
107	echo " <5> ifort + mpi"
108	echo " <7> xlf + mpi (IBM AIX)"
109	echo "Your choice ?" ; read reply
110	case ${reply} in
111	1) compilo='pgf' ; numproc=1 ;;
112	2) compilo='g95' ; numproc=1 ;;
113	3) compilo='mpi'
114	if [[ "${WHERE_MPI}" = "" ]]
115	then
116	echo Please initialize the variable WHERE_MPI in your environnement
117	exit
118	fi
119	echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
120	4) compilo='ifort' ; numproc=1 ;;
121	5) compilo='mpifort' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
122	7) compilo='mpixlf' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
123	### for tests
124	99) compilo='gnu' ; numproc=1 ;;
125	*) echo not supported by this script ; exit ;;
126	esac
127	# dimensions
128	if [ ${donotcompile} -eq 0 ]
129	then
130	echo Grid points in longitude ? ; read lon
131	echo Grid points in latitude ? ; read lat
132	echo Number of vertical levels ? ; read level
133	fi
134	echo Number of domains ? ; read dom
135
136	###PB lecture dom si < last
137
138	case ${dom} in
139	1) single='_single' ;;
140	*) single='_nest' ;;
141	esac
142	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
143	then
144	single=''
145	fi
146
147	testflag=''
148	####
149	#testflag='_test'
150	####
151
152	conf_wrf="${config}${scenario}${phys}${compilo}_${machine}${single}${testflag}"
153	\rm what_folder 2> /dev/null
154	echo ${conf_wrf} > what_folder
155	if [ ${donotcompile} -eq 1 ]
156	then
157	#\rm what_folder 2> /dev/null
158	#echo '**********************'
159	#echo '*** Your folder is ...'
160	#echo '**********************'
161	#echo ${conf_wrf} \| tee what_folder
162	#cat what_folder
163	#echo ${conf_wrf} > what_folder
164	#echo ${reply} > what_compilo
165	#echo ${numproc} > what_numproc
166	if [[ "${phys}" != "nophys_" ]]
167	then
168	exit
169	fi
170	else
171	echo Number of tracers ? ; read tra
172	if [ ${tra} -eq 0 ]
173	then
174	tra=1
175	fi
176	fi
177	# folder
178	mkdir ${conf_wrf} 2> /dev/null
179	if [[ "$?" == 0 ]]
180	then
181	echo new folder ... link sources
182	if [[ "${phys}" == "newphys_" ]]
183	then
184	\rm copy_model_tmp > /dev/null
185	if [[ "${scenario}" == "" ]]
186	then
187	sed s+"mars_lmd"+"mars_lmd_new"+g copy_model > copy_model_tmp
188	else
189	echo SCENARIO ${scenario} DID YOU INCLUDE THE SPECIFIC folder ? ; read dummy
190	sed s+"mars_lmd"+"mars_lmd_new_${scenario}"+g copy_model > copy_model_tmp
191	if [[ "${config}" == "les" ]]
192	then
193	echo "NOT SUPPORTED, check options"
194	exit
195	fi
196	fi
197	if [[ "${config}" == "les" ]]
198	then
199	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g copy_model_tmp > yeah
200	mv yeah copy_model_tmp
201	fi
202	chmod 755 copy_model_tmp
203	./copy_model_tmp
204	\rm copy_model_tmp
205	mv WRFV2 ${conf_wrf}/
206	cd ${conf_wrf}/WRFV2
207	if [[ "${scenario}" == "" ]]
208	then
209	ln -sf mars_lmd_new mars_lmd
210	else
211	ln -sf mars_lmd_new_${scenario} mars_lmd
212	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/Registry.EM mars_lmd_new_${scenario}/
213	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/*.inc mars_lmd_new_${scenario}/
214	cd Registry ; ln -sf ../mars_lmd_new_${scenario}/Registry.EM . ; cd ..
215	fi
216	ln -sf meso_callkeys_newphys.h meso_callkeys.h
217	cd Registry ; Registry.bash ; cd ..
218	else
219	#./copy_model
220	if [[ "${config}" == "les" ]]
221	then
222	### NB: With physics: LES folder // Without physics : LESnophys_ folder
223	### ---- because differences in 'modif' folder ----
224	sed s+"PWD/SRC/"+"PWD/SRC/LES$phys/"+g copy_model > copy_model_tmp
225	else
226	cp copy_model copy_model_tmp
227	fi
228	chmod 755 copy_model_tmp
229	./copy_model_tmp
230	\rm copy_model_tmp
231	mv WRFV2 ${conf_wrf}/
232	cd ${conf_wrf}/WRFV2
233	cd Registry ; Registry.bash ; cd ..
234	fi
235	#### sparadrap consequent a l'utilisation de copy_model pour les liens
236	#### -- car alors il manque fftpack
237	if [[ "${config}" == "les" ]]
238	then
239	if [[ "${phys}" == "nophys_" ]]
240	then
241	## voir ci-dessus pour le folder
242	cp ../../SRC/LES$phys/correcfft ./
243	else
244	cp ../../SRC/LES/correcfft ./
245	fi
246	./correcfft
247	\rm correcfft
248	fi
249	else
250	cd ${conf_wrf}/WRFV2
251	if [ ${fresh_start} -eq 1 ]
252	then
253	echo '*** FRESH START, I clean everything'
254	clean -a > /dev/null 2> /dev/null
255	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
256	answer='y' ## a voir... pas si sur
257	else
258	if [[ "${phys}" != "nophys_" ]]
259	then
260	echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
261	case ${answer} in
262	y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
263	*) answer='no' ;;
264	esac
265	fi
266	fi
267	fi
268	if [[ "${phys}" == "newphys_" ]]
269	then
270	echo "How many scatterers are you using : 1,2,..." ; read scat
271	else
272	scat=1 ## dummy stuff
273	fi
274
275	# summary
276	echo '**********************'
277	echo '*** Your folder is ...'
278	echo '**********************'
279	echo ${conf_wrf}
280	echo '**********************'
281	echo '****************************************'
282	echo so ...
283	echo your computer is ${machine} bits
284	echo ${compilo} is your compiler
285	if [[ "${compilo}" = "mpi" ]]
286	then
287	echo MPICH is in ${WHERE_MPI}
288	fi
289	echo you will use ${numproc} processors
290	echo you have ${lon} x points
291	echo ' '${lat} y points
292	echo ' '${level} z points
293	echo ' '${dom} domains
294	echo ' '${tra} tracers
295	if [[ "${phys}" == "newphys_" ]]
296	then
297	echo ' '${scat} scatterers
298	fi
299	echo '****************************************'
300	# save answer
301	\rm last 2> /dev/null
302	touch last
303	echo ${reply} >> last
304	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
305	then
306	echo ${numproc} >> last
307	fi
308	echo ${lon} >> last
309	echo ${lat} >> last
310	echo ${level} >> last
311	echo ${dom} >> last
312	echo ${tra} >> last
313	echo ${answer} >> last
314	echo ${scat} >> last
315
316	#------------
317	# log files
318	#------------
319	\rm log_compile 2> /dev/null
320	\rm log_error 2> /dev/null
321
322	#-----------------
323	# configure WRF
324	#-----------------
325	mv configure.wrf configure.wrf.bak 2> /dev/null
326	########################
327	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
328
329	#### in this case options are different because for LES, WRFV3 is used
330	if [[ "${config}" == "les" ]]
331	then
332	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
333	fi
334
335	case ${conf_wrf_forall} in
336
337	#######LES-specific (WRFV3-based) -- previously in 'makeles'
338	#######
339
340	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
341	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
342	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
343	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
344	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
345	then
346	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
347	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
348	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
349	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
350	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
351	else
352	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
353	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
354	fi
355	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
356	### pas forcement necessaire ici mais OK
357	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
358	\rm conf > /dev/null ;;
359
360	lesmpifort_64) ## MPI (dm) 64 bits IFORT
361	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
362	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
363	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
364	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
365	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
366	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
367	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
368	\rm conf > /dev/null ;;
369
370	#######
371	#######LES-specific (WRFV3-based) -- previously in 'makeles'
372
373	#######TEST TEST
374	# GFORTRAN, 64 bits, no nesting
375	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
376	echo 15 \| configure > log_compile 2> log_error
377	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
378	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
379	#######TEST TEST
380	# PGF90, 32 bits, no nesting
381	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
382	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
383	# PGF90, 32 bits, nesting
384	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
385	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
386	# PGF90, 64 bits, no nesting
387	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
388	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
389	# PGF90, 64 bits, nesting
390	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
391	echo 4 \| configure > log_compile 2> log_error
392	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
393	# G95, 32 bits, no nesting
394	g95_32_single) echo 13 \| configure > log_compile 2> log_error
395	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
396	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
397	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
398	echo 14 \| configure > log_compile 2> log_error
399	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
400	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
401	# IFORT, 64 bits, no nesting
402	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
403	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
404	## !!! NETCDF must be defined
405	sed s+"lio_grib_share"+"lio_grib_share -L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
406	mv -f yeah configure.wrf ;;
407	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
408	echo 9 \| configure > log_compile 2> log_error
409	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
410	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
411	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
412	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
413	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
414	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
415	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
416	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
417	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
418	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
419	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
420	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
421	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
422	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
423	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
424	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
425	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
426	### necessary even if mpi-selector is used (no need in makegcm though)
427	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
428	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
429	## !!! NETCDF must be defined
430	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
431	mv -f yeah configure.wrf
432	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
433	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
434	mv -f yeah configure.wrf ;;
435	# MPICH, 64 bits, no nesting / nesting
436	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
437	echo 3 \| configure > log_compile 2> log_error
438	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
439	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
440	#\| sed s+"fastsse"+"fast"+g > yeah
441	mv -f yeah configure.wrf ;;
442	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
443	##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
444	##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
445	#mv -f yeah configure.wrf ;;
446	# MPICH, 64 bits, OK with periodic BC but no positive definite
447	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
448	echo 2 \| configure > log_compile 2> log_error
449	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
450	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
451	mv -f yeah configure.wrf ;;
452	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
453	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
454	echo 3 \| configure > log_compile 2> log_error
455	sed -f mars.sed configure.wrf > yeah
456	mv -f yeah configure.wrf ;;
457	# ANYTHING ELSE
458	*) echo NO PRESETS ...
459	if [ ${donotallow} -eq 0 ]
460	then
461	configure
462	else
463	# problem when an input file is used
464	echo 'please cd to '$PWD' and type ./configure'
465	exit
466	fi ;;
467	esac
468	########################
469
470
471	### here a case structure would be great
472
473	if [[ "${phys}" == "newphys_" ]]
474	then
475	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
476	then
477	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
478	else
479	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
480	fi
481	mv -f yeah configure.wrf
482	fi
483
484	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment
485	then
486	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
487	mv -f yeah configure.wrf
488	fi
489
490	################
491	if [[ "${phys}" == "nophys_" ]]
492	then
493	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
494	then
495	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
496	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
497	else
498	### not tested yet but should be working
499	echo CAUTION CAUTION CAUTION NOT FULLY TESTED
500	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
501	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
502	fi
503	fi
504	################
505
506	if [ ${debug} -ne 0 ] # not working for xlf!
507	then
508	echo 'DEBUG DEBUG DEBUG DEBUG'
509	sed s+"#-g"+"-g"+g configure.wrf > yeah
510	mv -f yeah configure.wrf
511	fi
512
513
514	##################################################
515	# compile physics
516	##################################################
517	if [ ${donotcompilephys} -eq 0 ]
518	then
519
520	cd mars_lmd/
521
522	# required size
523	#----------------
524	case ${numproc} in
525	1) physx=$(expr ${lon} - 1)
526	physy=$(expr ${lat} - 1)
527	physz=$(expr ${level} - 1) ;;
528	2) physx=$(expr ${lon} - 1)
529	physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 2)
530	physz=$(expr ${level} - 1) ;;
531	4) physx=$(expr ${lon} - 1) ; physx=$(expr ${physx} \/ 2)
532	physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 2)
533	physz=$(expr ${level} - 1) ;;
534	6) physx=$(expr ${lon} - 1) ; physx=$(expr ${physx} \/ 2)
535	physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 3)
536	physz=$(expr ${level} - 1) ;;
537	8) physx=$(expr ${lon} - 1) ; physx=$(expr ${physx} \/ 2)
538	physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 4)
539	physz=$(expr ${level} - 1) ;;
540	12) physx=$(expr ${lon} - 1) ; physx=$(expr ${physx} \/ 3)
541	physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 4)
542	physz=$(expr ${level} - 1) ;;
543	16) physx=$(expr ${lon} - 1) ; physx=$(expr ${physx} \/ 4)
544	physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 4)
545	physz=$(expr ${level} - 1) ;;
546	20) physx=$(expr ${lon} - 1) ; physx=$(expr ${physx} \/ 4)
547	physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 5)
548	physz=$(expr ${level} - 1) ;;
549	24) physx=$(expr ${lon} - 1) ; physx=$(expr ${physx} \/ 4)
550	physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 6)
551	physz=$(expr ${level} - 1) ;;
552	32) physx=$(expr ${lon} - 1) ; physx=$(expr ${physx} \/ 4)
553	physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 8)
554	physz=$(expr ${level} - 1) ;;
555	64) physx=$(expr ${lon} - 1) ; physx=$(expr ${physx} \/ 8)
556	physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 8)
557	physz=$(expr ${level} - 1) ;;
558	128) physx=$(expr ${lon} - 1) ; physx=$(expr ${physx} \/ 8)
559	physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 16)
560	physz=$(expr ${level} - 1) ;;
561	*) echo not supported ; exit
562	esac
563
564	# change this if you change num_soil_layers in WRF
565	# -- default is 10
566	if [[ "${phys}" == "newphys_" ]]
567	then
568	soilsize=18 ## nouvelle physique
569	else
570	soilsize=10
571	fi
572
573	# GCM environment variables
574	#--------------------------
575	export LMDGCM=$PWD
576	export LIBOGCM=$PWD/libo
577
578	# generate the appropriate dimphys
579	#---------------------------------
580	cd libf/phymars
581	\rm dimphys.h 2> /dev/null
582	physize=$(expr ${physx} \* ${physy})
583	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
584	head -15 dimphys.h
585	###
586	### TEST new new phys
587	if [[ "${phys}" == "newphys_" ]]
588	then
589	touch callkeys.h.meso
590	ln -sf meso_callkeys.h callkeys.h
591	#touch dustlift.F.meso
592	# ln -sf meso_dustlift.F dustlift.F ## attention avec "ancienne nouvelle physique"
593	touch readtesassim.F90.meso
594	ln -sf meso_readtesassim.F90 readtesassim.F90 ## attention idem
595	touch gr_fi_dyn.F.lien
596	ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger ## attention idem
597	###############################
598	###############################
599	\rm scatterers.h
600	cat << EOF > scatterers.h
601	!-----------------------------------------------------------------------
602	! INCLUDE 'scatterers.h'
603	!
604	! Number of kind of tracer radiative properties
605	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
606	! (ex: naerkind=1 if you use one dust mode without ice ...)
607	! (ex: naerkind=2 if you use one dust mode and active ice ...)
608	!-----------------------------------------------------------------------
609
610	integer, parameter :: naerkind=${scat}
611
612	!-----------------------------------------------------------------------
613	EOF
614	###############################
615	###############################
616	fi
617	###
618	###
619	cd ../..
620
621	# prepare for nesting
622	#---------------------
623	cd libf
624	duplicate${dom} 2> /dev/null
625	cd ..
626
627	# compile physics
628	#--------------------------
629	\rm libf/grid/dimensions.h 2> /dev/null
630	\rm -rf libo/* 2> /dev/null
631	echo 1. compiling LMD physics ...
632	echo compilation info in:
633	echo $PWD/libo/log_compile_phys
634
635	if [ ${debug} -ne 0 ]
636	then
637	echo 'DEBUG DEBUG DEBUG DEBUG'
638	nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
639	else
640	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
641	fi
642	echo ... done
643	# clean the duplicate routines
644	cd libf
645	duplicate1 2> /dev/null
646	cd ..
647
648	# merge LMD executables in one lib
649	#--------------------------------------
650	cd libo
651	mkdir temp
652	#cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp
653	cp -f LINUX/.a temp
654	cd temp
655	ar x libbibio.a
656	ar x libphymars.a
657	ar x libaeronomars.a
658	\rm *.a
659	ar r liblmd.a *
660	cp -f liblmd.a ..
661	cd ..
662	\rm -r temp
663	nm liblmd.a > liblmd_content
664	# finish merge
665	cd ..
666
667	# save a copy
668	#--------------
669	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}_${scat}
670	echo '****************************************'
671
672	# ok
673	#----
674	cd ..
675
676	# manage nest includes in module_lmd_driver.F
677	#----
678	cp call_meso_inifis$dom.inc call_meso_inifis.inc
679	cp call_meso_physiq$dom.inc call_meso_physiq.inc
680
681
682	fi
683	##################################################
684	# END compile physics
685	##################################################
686
687	#------------------
688	# compile WRF
689	#------------------
690	if [ ${justphys} -eq 0 ]
691	then
692
693	echo 2. compiling WRF dynamical core ...
694
695	if [[ "${phys}" == "nophys_" ]]
696	then
697	echo 'NO LMD PHYSICS included'
698	else
699	if [[ ! ( -f "call_meso_physiq.inc" ) ]]
700	then
701	echo 'did you compile the physics ? no call_meso_physiq.inc !'
702	exit
703	fi
704	fi
705
706	# be sure to compile with the most recent physics
707	touch phys/module_lmd_driver.F
708
709	# talk to user
710	echo '>>> compiling ... this may be long ... <<<'
711	echo check progress in:
712	echo $PWD/log_compile
713	echo check possible errors in:
714	echo $PWD/log_error
715
716	# compile ...
717	case ${config} in
718	'') compile em_real > log_compile 2> log_error
719	# save executables
720	cd main
721	if [[ -f real.exe ]]
722	then
723	echo 'Looks good ! real.exe is here...'
724	fi
725	if [[ -f wrf.exe ]]
726	then
727	echo 'Looks good ! wrf.exe is here...'
728	fi
729	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
730	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
731	cd .. ;;
732	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
733	echo '>>> YOUR CONFIG IS : '${config}
734	compile em_quarter_ss > log_compile 2> log_error
735	# save executables
736	cd main
737	if [[ -f ideal.exe ]]
738	then
739	echo 'Looks good ! ideal.exe is here...'
740	fi
741	if [[ -f wrf.exe ]]
742	then
743	echo 'Looks good ! wrf.exe is here...'
744	fi
745	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
746	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
747	cd .. ;;
748	'les') echo '>>> YOUR CONFIG IS : '${config}
749	mkdir 'test/em_les' 2> /dev/null
750	compile em_les > log_compile 2> log_error
751	# save executables
752	cd main
753	if [[ -f ideal.exe ]]
754	then
755	echo 'Looks good ! ideal.exe is here...'
756	fi
757	if [[ -f wrf.exe ]]
758	then
759	echo 'Looks good ! wrf.exe is here...'
760	fi
761	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
762	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
763	cd .. ;;
764	*) echo not supported... please use ; echo ideal les ; exit ;;
765	esac
766	echo '*****last lines from log_error*******'
767	tail -n 20 log_error
768	fi
769
770	# the end
771	echo '****************************************'
772	echo 'done.'
773	echo '****************************************'
774	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}
775	mv last ../../
776
777	# add here specific messages
778	if [[ "${dom}" != "1" ]]
779	then
780	nest=$(expr ${lon} + 4)
781	echo NB: in namelist.input, please set:
782	echo '
783	max_dom = '$dom'
784	s_we = 1,1,
785	e_we = '$lon','$nest',
786	s_sn = 1,1,
787	e_sn = '$lat','$nest',
788	s_vert = 1,1,
789	e_vert = '$level','$level','
790	fi
791

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