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makemeso @ 1937

Last change on this file since 1937 was 1937, checked in by aslmd, 7 years ago
MESOSCALE: makemeso: made compil for LES compatible with ciclad env and Occigen env i.e. netcdff is put forward by configure in Occigen but not in ciclad
Property svn:executable set to ``*
File size: 38.9 KB

Line
1	#! /bin/bash
2
3
4	##################################
5	# makemeso allows you to compile #
6	# WRF with modified LMD physics #
7	##################################
8
9	##############################
10	# Author: A. Spiga #
11	# New version : October 2008 #
12	# Last update : January 2009 #
13	# November 09 #
14	# January 11 #
15	##############################
16
17	###############################
18	#### Type makemeso -h for help
19	###############################
20
21
22
23	##############################################################################################
24	##############################################################################################
25	##############################################################################################
26	##############################################################################################
27
28	donotcompile=0
29	donotallow=0
30	config='real'
31	donotcompilephys=0
32	justphys=0
33	debug=0
34	fresh_start=0
35	phys="mars_lmd"
36	scenario=""
37	from_scratch=0
38
39	while getopts "drc:njhgp:fs:xe" options; do
40	case $options in
41	d ) donotcompile=1;; ## just to check the compile folder
42	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
43	c ) config="${OPTARG}";; ## idealized cases
44	n ) donotcompilephys=1;; ## do not recompile physics
45	j ) justphys=1;; ## just compile LMD physics
46	g ) debug=1;; ## debug mode
47	p ) phys="${OPTARG}";; ## choose physics
48	f ) fresh_start=1;; ## a fresh start
49	e ) from_scratch=1;; ## a fresh start with a completely new folder
50	s ) scenario="${OPTARG}";; ## a specific scenario (with precompiling flags)
51	x ) donotcompile=1;phys="void_lmd_new";donotcompilephys=1;; ## a case with no LMD physics included
52	h ) echo "
53	# Use:
54	#
55	# makemeso ## basic use (real-case configuration)
56	#
57	# makemeso -d ## no compilation, just check the name of the compile folder
58	#
59	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
60	# makemeso -c les ## large-eddy simulations mode based on WRFV3
61	#
62	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
63	#
64	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
65	# makemeso -r < last ## basic use + skip questions + only known config
66	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
67	#
68	# makemeso -j ## just compile the LMD physics
69	#
70	# makemeso -g ## debug mode
71	#
72	# makemeso -h ## display options
73	#
74	# makemeso -p mars_lmd_new ## choose physics
75	# venus_lmd_new
76	#
77	# makemeso -f ## fresh start [clean -a]
78	#
79	# makemeso -e ## a completely new recompile with erasing the WHOLE compiling folder
80	#
81	# makemeso -s DUSTSTORM ## a specific scenario (with precompiling flags)
82	#
83	# makemeso -x ## a case with no LMD physics included
84	" ; exit ;;
85	esac
86	done
87
88	#--------------
89	# talk w/ user
90	#--------------
91	echo '****************************************'
92	echo ' LMD Mesoscale Model Compiler. Welcome.'
93	echo '****************************************'
94	if [[ "${phys}" == "new" ]]
95	then
96	echo '*********** PHYSICS: ' ${phys}
97	echo '****************************************'
98	fi
99	# computer
100	uname -a \| grep x86_64 > /dev/null
101	if [[ "$?" == 0 ]]
102	then
103	machine='64'
104	else
105	machine='32'
106	fi
107	# compiler
108	echo "Supported compiler options are "
109	echo " <1> pgf90"
110	echo " <2> g95"
111	echo " <3> pgf90 + mpi"
112	echo " <4> ifort"
113	echo " <5> ifort + mpi"
114	echo " <7> xlf + mpi (IBM AIX)"
115	echo " <8> gfortran"
116	echo "Your choice ?" ; read reply
117	case ${reply} in
118	1) compilo='pgf' ; numproc=1 ;;
119	2) compilo='g95' ; numproc=1 ;;
120	3) compilo='mpi'
121	if [[ "${WHERE_MPI}" = "" ]]
122	then
123	echo Please initialize the variable WHERE_MPI in your environnement
124	exit
125	fi ;;
126	4) compilo='ifort' ; numproc=1 ;;
127	5) compilo='mpifort' ;;
128	7) compilo='mpixlf' ;;
129	8) compilo='gnu' ; numproc=1 ;;
130	*) echo not supported by this script ; exit ;;
131	esac
132	# number of processors
133	if [[ "${phys}" == "new" ]]
134	then
135	numproc=999
136	else
137	case ${reply} in
138	3) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
139	5) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
140	7) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
141	esac
142	fi
143
144	# dimensions
145	if [ ${donotcompile} -eq 0 ]
146	then
147	# ngrid: now dynamically set in newphys 03/2014
148	if [[ "${phys}" == "new" ]]
149	then
150	lon=999
151	lat=999
152	level=999
153	else
154	echo Grid points in longitude ? ; read lon
155	echo Grid points in latitude ? ; read lat
156	echo Number of vertical levels ? ; read level
157	fi
158	fi
159	echo Number of domains ? ; read dom
160
161	###PB lecture dom si < last
162
163	case ${dom} in
164	1) single='_single' ;;
165	*) single='_nest' ;;
166	esac
167	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
168	then
169	single=''
170	fi
171
172	testflag=''
173	####
174	#testflag='_test'
175	####
176
177	conf_wrf="${phys}_${config}${scenario}_${compilo}_${machine}${single}${testflag}"
178
179	if [ ${debug} -eq 1 ]
180	then
181	conf_wrf="debug_${conf_wrf}"
182	fi
183
184	\rm what_folder 2> /dev/null
185	echo ${conf_wrf} > what_folder
186	if [ ${donotcompile} -eq 0 ]
187	then
188	##\rm what_folder 2> /dev/null
189	##echo '**********************'
190	##echo '*** Your folder is ...'
191	##echo '**********************'
192	##echo ${conf_wrf} \| tee what_folder
193	##cat what_folder
194	##echo ${conf_wrf} > what_folder
195	##echo ${reply} > what_compilo
196	##echo ${numproc} > what_numproc
197	#if [[ "${phys}" != "nophys_" ]]
198	#then
199	# exit
200	#fi
201	#else
202	# tracers: now dynamically set in newphys 09/2013
203	if [[ "${phys}" == "new" ]]
204	then
205	tra=999
206	else
207	echo Number of tracers ? ; read tra
208	if [ ${tra} -eq 0 ]
209	then
210	tra=1
211	fi
212	fi
213	fi
214	# 'from scratch' case
215	if [ ${from_scratch} -eq 1 ]
216	then
217	echo "***** I ERASE THE FOLDER "${conf_wrf}
218	\rm -rf ${conf_wrf}
219	fi
220	# folder
221
222	mkdir ${conf_wrf} 2> /dev/null
223	if [[ "$?" == 0 ]]
224	then
225	echo new folder ... link sources
226	###############################################
227	echo ${phys}
228	./SRC/SCRIPTS/copy_model -p ${phys} -c ${config}
229	mv zeWRFV2 ${conf_wrf}/WRFV2
230	###############################################
231	if [[ "${phys}" == "new" ]]
232	then
233	cd ${conf_wrf}/WRFV2
234	if [[ "${config}" != "les" ]]
235	then
236	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
237	else
238	cp -L ../../SRC/LES/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
239	fi
240	cd phys
241	ln -sf module_lmd_driver.F.new module_lmd_driver.F
242	cd ..
243
244	else
245	cd ${conf_wrf}/WRFV2
246	cd Registry ; ./Registry.bash ; cd ..
247	fi
248	#### sparadrap consequent a l'utilisation de copy_model pour les liens
249	#### -- car alors il manque fftpack
250	if [[ "${config}" == "les" ]]
251	then
252	cp ../../SRC/LES/correcfft ./
253	./correcfft
254	\rm correcfft
255	fi
256	else
257	cd ${conf_wrf}/WRFV2
258	if [ ${fresh_start} -eq 1 ]
259	then
260	echo '*** FRESH START, I clean everything'
261	### clean the whole place
262	clean -a > /dev/null 2> /dev/null
263	### get a possibly modified registry !
264	if [[ "${phys}" == "new" ]]
265	then
266	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
267	else
268	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
269	fi
270	if [[ "${config}" == "les" ]]
271	then
272	cp ../../SRC/LES/WRFV2/Registry/Registry.EM Registry/
273	fi
274	### ensure the model will be recompiled from scratch with correct registry
275	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
276	# answer='y' ## a voir... pas si sur
277	# else
278	# if [[ "${phys}" != "nophys_" ]]
279	# then
280	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
281	# case ${answer} in
282	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
283	# *) answer='no' ;;
284	# esac
285	# fi
286	fi
287	fi
288
289	# summary
290	echo '**********************'
291	echo '*** Your folder is ...'
292	echo '**********************'
293	echo ${conf_wrf}
294	echo '**********************'
295	echo '****************************************'
296	echo so ...
297	echo your computer is ${machine} bits
298	echo ${compilo} is your compiler
299	if [[ "${compilo}" = "mpi" ]]
300	then
301	echo MPICH is in ${WHERE_MPI}
302	fi
303	echo you have ${dom} domains
304	if [[ "${phys}" == "new" ]]
305	then
306	echo number of processors can be changed without recompiling
307	echo x points can be changed without recompiling
308	echo y points can be changed without recompiling
309	echo z points can be changed without recompiling
310	echo number of tracers can be changed without recompiling
311	else
312	echo you will use ${numproc} processors
313	echo you have ${lon} x points
314	echo ' '${lat} y points
315	echo ' '${level} z points
316	echo ' '${tra} tracers
317	fi
318	echo '****************************************'
319	# save answer
320	\rm last 2> /dev/null
321	touch last
322	echo ${reply} >> last
323	if [[ "${phys}" != "new" ]]
324	then
325	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
326	then
327	echo ${numproc} >> last
328	fi
329	echo ${lon} >> last
330	echo ${lat} >> last
331	echo ${level} >> last
332	fi
333	echo ${dom} >> last
334	if [[ "${phys}" != *"new" ]]
335	then
336	echo ${tra} >> last
337	fi
338
339	#------------
340	# log files
341	#------------
342	\rm log_compile 2> /dev/null
343	\rm log_error 2> /dev/null
344
345	#-----------------
346	# configure WRF
347	#-----------------
348	mv configure.wrf configure.wrf.bak 2> /dev/null
349	########################
350	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
351
352	#### in this case options are different because for LES, WRFV3 is used
353	if [[ "${config}" == "les" ]]
354	then
355	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
356	fi
357
358	case ${conf_wrf_forall} in
359
360	#######LES-specific (WRFV3-based) -- previously in 'makeles'
361	#######
362
363	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
364	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
365	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
366	sed s+"-lnetcdf"+"-lnetcdf -L../$phys/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
367	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
368	then
369	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
370	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
371	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
372	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
373	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
374	else
375	#sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
376	#sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
377	#### OPENMPI
378	sed s+"mpif90 -f90=\$(SFC)"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
379	sed s+"mpicc -cc=\$(SCC)"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
380	fi
381	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
382	### pas forcement necessaire ici mais OK
383	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
384	\rm conf > /dev/null ;;
385
386	lesmpifort_64) ## MPI (dm) 64 bits IFORT
387	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
388	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
389	if [[ "${phys}" != "void" ]]
390	then
391	sed s+"-lnetcdff"+"TOZTOZ"+g configure.wrf > yeah ; mv -f yeah configure.wrf
392	# ... in case there is netcdff save it in TOZTOZ so that it is not impacted in the following sed
393	sed s+"-lnetcdf"+"-lnetcdf -L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
394	sed s+"TOZTOZ"+"-lnetcdff"+g configure.wrf > yeah ; mv -f yeah configure.wrf
395	else
396	sed s+"-lnetcdf"+"-lnetcdf $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
397	fi
398	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
399	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
400	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
401	sed s+"O3"+"O3 -mcmodel=large -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
402	#sed s+"-lnetcdf -lnetcdff"+"-lnetcdf -lnetcdff -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
403	if [ ${debug} -ne 0 ] # not working for xlf!
404	then
405	echo 'DEBUG DEBUG DEBUG DEBUG'
406	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
407	mv -f yeah configure.wrf
408	fi
409	\rm conf > /dev/null ;;
410
411	#######
412	#######LES-specific (WRFV3-based) -- previously in 'makeles'
413
414	# GFORTRAN, 64 bits, no nesting
415	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
416	echo 15 \| configure > log_compile 2> log_error
417	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
418	sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
419	# PGF90, 32 bits, no nesting
420	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
421	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
422	# PGF90, 32 bits, nesting
423	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
424	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
425	# PGF90, 64 bits, no nesting
426	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
427	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
428	#sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
429	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
430	# PGF90, 64 bits, nesting
431	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
432	echo 4 \| configure > log_compile 2> log_error
433	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
434	# G95, 32 bits, no nesting
435	g95_32_single) echo 13 \| configure > log_compile 2> log_error
436	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
437	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
438	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
439	echo 14 \| configure > log_compile 2> log_error
440	##### marche pas ....
441	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
442	#sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
443	#sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
444	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
445	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
446	# IFORT, 64 bits, no nesting
447	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
448	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
449	if [ ${debug} -ne 0 ] # not working for xlf!
450	then
451	echo 'DEBUG DEBUG DEBUG DEBUG'
452	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
453	mv -f yeah configure.wrf
454	fi
455	## !!! NETCDF must be defined
456	sed s+"lio_grib_share"+"lio_grib_share -L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
457	mv -f yeah configure.wrf ;;
458	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
459	echo 9 \| ./configure > log_compile 2> log_error
460	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
461	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
462	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
463	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
464	sed s+"-O1"+"-O1 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
465	sed s+"-O2"+"-O2 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
466	sed s+"-O3"+"-O3 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
467	if [ ${debug} -ne 0 ] # not working for xlf!
468	then
469	echo 'DEBUG DEBUG DEBUG DEBUG'
470	sed s+"#-g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
471	mv -f yeah configure.wrf
472	fi
473	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
474	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
475	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
476	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
477	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
478	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
479	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
480	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
481	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
482	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
483	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
484	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
485	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
486	### necessary even if mpi-selector is used (no need in makegcm though)
487	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
488	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
489	## !!! NETCDF must be defined
490	if [[ "${phys}" != "void" ]]
491	then
492	sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
493	else
494	sed s+"-lesmf_time"+"-lesmf_time $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
495	fi
496	mv -f yeah configure.wrf
497	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
498	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
499	mv -f yeah configure.wrf ;;
500	# MPICH, 64 bits, no nesting / nesting
501	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
502	echo 3 \| configure > log_compile 2> log_error
503	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
504	### the following line is necessary because readtesassim has a line "use netcdf" in it!
505	sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
506	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
507	#sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT -w -O3"+g > yeah
508	#\| sed s+"fastsse"+"fast"+g > yeah
509	mv -f yeah configure.wrf ;;
510	# #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
511	# ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
512	# ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
513	#sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah
514	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
515	#sed s+"-fastsse"+""+g configure.wrf > yeah
516	#sed s+"-fastsse"+"-fast"+g configure.wrf > yeah
517	#sed s+"-fastsse"+"-Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8 -Mfprelaxed"+g configure.wrf > yeah
518	#mv -f yeah configure.wrf ;;
519	# MPICH, 64 bits, OK with periodic BC but no positive definite
520	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
521	echo 2 \| configure > log_compile 2> log_error
522	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
523	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
524	mv -f yeah configure.wrf ;;
525	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
526	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
527	echo 3 \| configure > log_compile 2> log_error
528	sed -f physics.sed configure.wrf > yeah
529	mv -f yeah configure.wrf ;;
530	# ANYTHING ELSE
531	*) echo NO PRESETS ...
532	if [ ${donotallow} -eq 0 ]
533	then
534	configure
535	else
536	# problem when an input file is used
537	echo 'please cd to '$PWD' and type ./configure'
538	exit
539	fi ;;
540	esac
541	########################
542
543
544	### here a case structure would be great
545
546	if [[ "${phys}" == "new" ]]
547	then
548	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
549	then
550	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
551	else
552	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
553	fi
554	mv -f yeah configure.wrf
555	fi
556
557	### SCENARIO SCENARIO SCENARIO
558	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment?
559	then
560	# precompiling flag in WRF part
561	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
562	mv -f yeah configure.wrf
563	# precompiling flag in LMD part
564	cd $phys
565	cp -Lrf makegcm_${compilo} yeah
566	\rm makegcm_${compilo}
567	sed s+"-DMESOSCALE"+"-D${scenario} -DMESOSCALE"+ yeah > makegcm_${compilo}
568	chmod 755 makegcm_${compilo}
569	\rm yeah
570	cd ..
571	fi
572
573	################
574	#if [[ "${phys}" == "nophys_" ]]
575	#then
576	# if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
577	# then
578	# sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
579	# sed s+"-L../$phys/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
580	# else
581	# ### not tested yet but should be working
582	# echo CAUTION CAUTION CAUTION NOT FULLY TESTED
583	# sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
584	# sed s+"-L../$phys/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
585	# fi
586	#fi
587	################
588
589	if [[ "${phys}" == "venus" ]]
590	then
591	sed s+"LIB_BUNDLED = "+"LIB_BUNDLED = /usr/lib64/liblapack.so \ "+g configure.wrf > yeah ; mv -f yeah configure.wrf
592	fi
593
594	if [ ${debug} -ne 0 ] # not working for xlf!
595	then
596	echo 'DEBUG DEBUG DEBUG DEBUG'
597	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
598	#sed s+"# -g"+"-g -Ktrap=fp -Mbounds"+g configure.wrf > yeah
599	#sed s+"# -g"+"-g"+g configure.wrf > yeah
600	mv -f yeah configure.wrf
601	fi
602
603	if [[ "${phys}" == "prescribed" ]]
604	then
605	donotcompilephys=1
606	fi
607
608	# some compiler and environment mess things up when using -C
609	sed s+"-C"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
610
611	#exit
612	##################################################
613	# compile physics
614	##################################################
615	if [ ${donotcompilephys} -eq 0 ] #\|\| [[ "${phys}" != "prescribed" ]]
616	then
617
618	cd $phys/
619
620	if [[ "${phys}" == "new" ]]
621	then
622	divx=1
623	divy=1
624	else
625	# required size
626	#----------------
627	case ${numproc} in
628	1) divx=1 ; divy=1 ;;
629	2) divx=1 ; divy=2 ;;
630	4) divx=2 ; divy=2 ;;
631	6) divx=2 ; divy=3 ;;
632	8) divx=2 ; divy=4 ;;
633	12) divx=3 ; divy=4 ;;
634	16) divx=4 ; divy=4 ;;
635	20) divx=4 ; divy=5 ;;
636	24) divx=4 ; divy=6 ;;
637	32) divx=4 ; divy=8 ;;
638	64) divx=8 ; divy=8 ;;
639	128) divx=8 ; divy=16 ;;
640	*) echo not yet supported ; exit ;;
641	esac
642	fi
643	physx=$(expr ${lon} - 1)
644	restex=$(expr ${physx} \% ${divx})
645	physy=$(expr ${lat} - 1)
646	restey=$(expr ${physy} \% ${divy})
647	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
648	then
649	echo nx-1 shall be divided by ${divx}
650	echo ny-1 shall be divided by ${divy}
651	exit
652	fi
653	physx=$(expr ${physx} \/ ${divx})
654	physy=$(expr ${physy} \/ ${divy})
655	physz=$(expr ${level} - 1)
656
657	# change this if you change num_soil_layers in WRF
658	# -- default is 10
659	if [[ "${phys}" == "new" ]]
660	then
661	soilsize=18 ## nouvelle physique. ne sert a rien ici. voir comsoil.
662	else
663	soilsize=10
664	fi
665
666	# GCM environment variables
667	#--------------------------
668	export LMDGCM=$PWD
669	export LIBOGCM=$PWD/libo
670
671	# generate the appropriate dimphys
672	#---------------------------------
673	if [[ "${phys}" == "mars" ]]
674	then
675	cd libf/phymars
676	elif [[ "${phys}" == "venus" ]]
677	then
678	cd libf/phyvenus
679	fi
680	\rm dimphys.h 2> /dev/null
681	# if [[ "${phys}" == "newphys_" ]]
682	# then
683	# ln -sf ../../meso_dimphys.h_ref . ## ne sert plus !!
684	# else
685	if [[ "${phys}" == "mars_lmd" ]]
686	then
687	physize=$(expr ${physx} \* ${physy})
688	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
689	head -15 dimphys.h
690	fi
691	#### TEST new new phys
692	#if [[ "${phys}" == "newphys_" ]]
693	#then
694	# touch gr_fi_dyn.F.lien
695	# ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
696	################################
697	################################
698	################################
699	#fi
700	####
701	####
702	cd ../..
703
704	# prepare for nesting
705	#---------------------
706	cd libf
707	duplicate${dom} 2> /dev/null
708	cd ..
709
710	# compile physics
711	#--------------------------
712	\rm libf/grid/dimensions.h 2> /dev/null
713	\rm -rf libo/* 2> /dev/null
714	echo 1. compiling LMD physics ...
715	echo compilation info in:
716	echo $PWD/libo/log_compile_phys
717
718	if [ ${debug} -ne 0 ]
719	then
720	if [[ "${phys}" == "mars" ]]
721	then
722	echo 'DEBUG DEBUG DEBUG DEBUG'
723	nohup makegcm_${compilo} -debug -full -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
724	elif [[ "${phys}" == "venus" ]]
725	then
726	echo 'DEBUG DEBUG DEBUG DEBUG'
727	nohup ./makelmdz -debug -full -p venus -d 51 rcm1d -arch linux-ifort -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys # on /u/ and /planeto/
728	nohup ./makelmdz --debug p venus -d 51 rcm1d -arch linux-ifort -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
729	fi
730	else
731	if [[ "${phys}" == "mars" ]]
732	then
733	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
734	elif [[ "${phys}" == "venus" ]]
735	then
736	nohup ./makelmdz -full -p venus -d 51 rcm1d -arch linux-ifort_meso -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys # on /u/ and /planeto/
737	nohup ./makelmdz -p venus -d 51 rcm1d -arch linux-ifort_meso -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
738	#nohup ./makelmdz -full -p venus -d 51 rcm1d -arch CICLADifort -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys # on CICLAD
739	#nohup ./makelmdz -p venus -d 51 rcm1d -arch CICLADifort -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
740	#nohup ./makelmdz -full -p venus -d 51 rcm1d -arch X64_MESU -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys #on MESU
741	#nohup ./makelmdz -p venus -d 51 rcm1d -arch X64_MESU -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
742	#nohup makelmdz -full -p venus -d 51 rcm1d -arch X64_OCCIGEN -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys #on OCCIGEN
743	#nohup makelmdz -p venus -d 51 rcm1d -arch X64_OCCIGEN -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
744	fi
745	fi
746	echo ... done
747	# clean the duplicate routines
748	cd libf
749	duplicate1 2> /dev/null
750	cd ..
751
752	# merge LMD executables in one lib
753	#--------------------------------------
754	cd libo
755	mkdir temp
756	if [[ "${phys}" == "mars" ]]
757	then
758	cp -f LINUX/.a temp
759	else #VENUS
760	cp -f linux/.a temp/ # on /u/ and /planeto/
761	#cp -f /home/mlefevre/modipsl/lib/libioipsl.a temp/ #on CICLAD
762	#cp -f X64/.a temp #on MESU and OCCIGEN
763	cp -f ../ioipsl/libioipsl.a temp/
764	fi
765	cd temp
766	if [[ "${phys}" == "mars" ]]
767	then
768	ar x libbibio.a
769	ar x libphymars.a
770	ar x libaeronomars.a
771	else
772	ar x libphyvenus.a
773	ar x libmisc.a
774	ar x libphy_common.a
775	ar x libioipsl.a
776	fi
777	\rm *.a
778	ar r liblmd.a *
779	cp -f liblmd.a ..
780	cd ..
781	\rm -r temp
782	nm liblmd.a > liblmd_content
783	# finish merge
784	cd ..
785	if [[ "${phys}" == "new" ]]
786	then
787	if [[ "${phys}" == "mars" ]]
788	then
789	# include modules for interfacing
790	mv *.mod ../inc/
791	elif [[ "${phys}" == "venus" ]]
792	then
793	mv ./libo/linux/.mod ../inc/ # on /u/ and /planeto/
794	#mv ./libo/CICLAD/.mod ../inc/ # on CICLAD
795	#mv ./libo/X64/.mod ../inc/ # on MESU and OCCIGEN
796	cp -f ./ioipsl/*.mod ../inc/
797	fi
798	fi
799
800
801	# save a copy
802	#--------------
803	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}
804	echo '****************************************'
805
806	# ok
807	#----
808	cd ..
809
810	# manage nest includes in module_lmd_driver.F
811	#----
812	cp call_meso_inifis$dom.inc call_meso_inifis.inc
813	cp call_meso_physiq$dom.inc call_meso_physiq.inc
814
815
816	fi
817	##################################################
818	# END compile physics
819	##################################################
820
821	#------------------
822	# compile WRF
823	#------------------
824	if [ ${justphys} -eq 0 ]
825	then
826
827	echo 2. compiling WRF dynamical core ...
828
829	#if [[ "${phys}" == "nophys_" ]]
830	#then
831	# echo 'NO LMD PHYSICS included'
832	#else
833	# if [[ ! ( -f "call_meso_physiq.inc" ) ]]
834	# then
835	# echo 'did you compile the physics ? no call_meso_physiq.inc !'
836	# exit
837	# fi
838	#fi
839
840	# be sure to compile with the most recent physics
841	touch phys/module_lmd_driver.F
842
843	# talk to user
844	echo '>>> compiling ... this may be long ... <<<'
845	echo check progress in:
846	echo $PWD/log_compile
847	echo check possible errors in:
848	echo $PWD/log_error
849
850	# compile ...
851	echo '>>> YOUR CONFIG IS : '${config}
852	case ${config} in
853	'real') ./compile em_real > log_compile 2> log_error
854	# save executables
855	cd main
856	if [[ -f real.exe ]]
857	then
858	echo 'Looks good ! real.exe is here...'
859	fi
860	if [[ -f wrf.exe ]]
861	then
862	echo 'Looks good ! wrf.exe is here...'
863	fi
864	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
865	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
866	cd .. ;;
867	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
868	#echo '>>> YOUR CONFIG IS : '${config}
869	./compile em_quarter_ss > log_compile 2> log_error
870	# save executables
871	cd main
872	if [[ -f ideal.exe ]]
873	then
874	echo 'Looks good ! ideal.exe is here...'
875	fi
876	if [[ -f wrf.exe ]]
877	then
878	echo 'Looks good ! wrf.exe is here...'
879	fi
880	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
881	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
882	cd .. ;;
883	'les') #echo '>>> YOUR CONFIG IS : '${config}
884	mkdir 'test/em_les' 2> /dev/null
885	./compile em_les > log_compile 2> log_error
886	# save executables
887	cd main
888	if [[ -f ideal.exe ]]
889	then
890	echo 'Looks good ! ideal.exe is here...'
891	fi
892	if [[ -f wrf.exe ]]
893	then
894	echo 'Looks good ! wrf.exe is here...'
895	fi
896	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
897	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
898	cd .. ;;
899	*) echo not supported... please use ; echo ideal les ; exit ;;
900	esac
901	echo '*****last lines from log_error*******'
902	tail -n 20 log_error
903	fi
904
905	# the end
906	echo '****************************************'
907	echo 'done.'
908	echo '****************************************'
909	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}
910	mv last ../../
911	svn info ../../ > ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.svn.info
912
913	# link latest compiled folder as LATEST
914	cd ../../
915	rm -rf LATEST
916	ln -sf ${conf_wrf} LATEST
917
918	# link latest compiled exec
919	cd LATEST
920	case ${config} in
921	'real') ln -sf real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe real.exe ;;
922	'ideal') ln -sf ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe ideal.exe ;;
923	'les') ln -sf ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe ideal.exe ;;
924	esac
925	ln -sf wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe wrf.exe
926	cd ..
927
928	# add here specific messages
929	if [[ "${dom}" != "1" ]]
930	then
931	nest=$(expr ${lon} + 4)
932	echo NB: in namelist.input, please set:
933	echo '
934	max_dom = '$dom'
935	s_we = 1,1,
936	e_we = '$lon','$nest',
937	s_sn = 1,1,
938	e_sn = '$lat','$nest',
939	s_vert = 1,1,
940	e_vert = '$level','$level','
941	fi
942
943

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