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makemeso @ 1596

Last change on this file since 1596 was 1590, checked in by aslmd, 8 years ago
moved interface for outputs from module_lmd_driver to update_outputs_physiq_mod. updated the nophysics case by adding a case dynphy_wrf_void_lmd_new which will serve as a template for a physiq interface
Property svn:executable set to ``*
File size: 36.4 KB

Line
1	#! /bin/bash
2
3
4	##################################
5	# makemeso allows you to compile #
6	# WRF with modified LMD physics #
7	##################################
8
9	##############################
10	# Author: A. Spiga #
11	# New version : October 2008 #
12	# Last update : January 2009 #
13	# November 09 #
14	# January 11 #
15	##############################
16
17	###############################
18	#### Type makemeso -h for help
19	###############################
20
21
22
23	##############################################################################################
24	##############################################################################################
25	##############################################################################################
26	##############################################################################################
27
28	donotcompile=0
29	donotallow=0
30	config='real'
31	donotcompilephys=0
32	justphys=0
33	debug=0
34	fresh_start=0
35	phys="mars_lmd"
36	scenario=""
37	from_scratch=0
38
39	while getopts "drc:njhgp:fs:xe" options; do
40	case $options in
41	d ) donotcompile=1;; ## just to check the compile folder
42	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
43	c ) config="${OPTARG}";; ## idealized cases
44	n ) donotcompilephys=1;; ## do not recompile physics
45	j ) justphys=1;; ## just compile LMD physics
46	g ) debug=1;; ## debug mode
47	p ) phys="${OPTARG}";; ## choose physics
48	f ) fresh_start=1;; ## a fresh start
49	e ) from_scratch=1;; ## a fresh start with a completely new folder
50	s ) scenario="${OPTARG}";; ## a specific scenario (with precompiling flags)
51	x ) donotcompile=1;phys="void_lmd_new";donotcompilephys=1;; ## a case with no LMD physics included
52	h ) echo "
53	# Use:
54	#
55	# makemeso ## basic use (real-case configuration)
56	#
57	# makemeso -d ## no compilation, just check the name of the compile folder
58	#
59	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
60	# makemeso -c les ## large-eddy simulations mode based on WRFV3
61	#
62	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
63	#
64	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
65	# makemeso -r < last ## basic use + skip questions + only known config
66	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
67	#
68	# makemeso -j ## just compile the LMD physics
69	#
70	# makemeso -g ## debug mode
71	#
72	# makemeso -h ## display options
73	#
74	# makemeso -p mars_lmd_new ## choose physics
75	#
76	# makemeso -f ## fresh start [clean -a]
77	#
78	# makemeso -e ## a completely new recompile with erasing the WHOLE compiling folder
79	#
80	# makemeso -s DUSTSTORM ## a specific scenario (with precompiling flags)
81	#
82	# makemeso -x ## a case with no LMD physics included
83	" ; exit ;;
84	esac
85	done
86
87	#--------------
88	# talk w/ user
89	#--------------
90	echo '****************************************'
91	echo ' LMD Mesoscale Model Compiler. Welcome.'
92	echo '****************************************'
93	if [[ "${phys}" == "new" ]]
94	then
95	echo '*********** PHYSICS: ' ${phys}
96	echo '****************************************'
97	fi
98	# computer
99	uname -a \| grep x86_64 > /dev/null
100	if [[ "$?" == 0 ]]
101	then
102	machine='64'
103	else
104	machine='32'
105	fi
106	# compiler
107	echo "Supported compiler options are "
108	echo " <1> pgf90"
109	echo " <2> g95"
110	echo " <3> pgf90 + mpi"
111	echo " <4> ifort"
112	echo " <5> ifort + mpi"
113	echo " <7> xlf + mpi (IBM AIX)"
114	echo "Your choice ?" ; read reply
115	case ${reply} in
116	1) compilo='pgf' ; numproc=1 ;;
117	2) compilo='g95' ; numproc=1 ;;
118	3) compilo='mpi'
119	if [[ "${WHERE_MPI}" = "" ]]
120	then
121	echo Please initialize the variable WHERE_MPI in your environnement
122	exit
123	fi ;;
124	4) compilo='ifort' ; numproc=1 ;;
125	5) compilo='mpifort' ;;
126	7) compilo='mpixlf' ;;
127	### for tests
128	99) compilo='gnu' ; numproc=1 ;;
129	*) echo not supported by this script ; exit ;;
130	esac
131	# number of processors
132	if [[ "${phys}" == "new" ]] #\|\| [[ "${phys}" == "nophys_" ]]
133	then
134	numproc=999
135	else
136	case ${reply} in
137	3) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
138	5) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
139	7) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
140	esac
141	fi
142
143	# dimensions
144	if [ ${donotcompile} -eq 0 ]
145	then
146	# ngrid: now dynamically set in newphys 03/2014
147	if [[ "${phys}" == "new" ]]
148	then
149	lon=999
150	lat=999
151	level=999
152	else
153	echo Grid points in longitude ? ; read lon
154	echo Grid points in latitude ? ; read lat
155	echo Number of vertical levels ? ; read level
156	fi
157	fi
158	echo Number of domains ? ; read dom
159
160	###PB lecture dom si < last
161
162	case ${dom} in
163	1) single='_single' ;;
164	*) single='_nest' ;;
165	esac
166	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
167	then
168	single=''
169	fi
170
171	testflag=''
172	####
173	#testflag='_test'
174	####
175
176	conf_wrf="${phys}_${config}${scenario}_${compilo}_${machine}${single}${testflag}"
177
178	if [ ${debug} -eq 1 ]
179	then
180	conf_wrf="debug_${conf_wrf}"
181	fi
182
183	\rm what_folder 2> /dev/null
184	echo ${conf_wrf} > what_folder
185	if [ ${donotcompile} -eq 0 ]
186	then
187	##\rm what_folder 2> /dev/null
188	##echo '**********************'
189	##echo '*** Your folder is ...'
190	##echo '**********************'
191	##echo ${conf_wrf} \| tee what_folder
192	##cat what_folder
193	##echo ${conf_wrf} > what_folder
194	##echo ${reply} > what_compilo
195	##echo ${numproc} > what_numproc
196	#if [[ "${phys}" != "nophys_" ]]
197	#then
198	# exit
199	#fi
200	#else
201	# tracers: now dynamically set in newphys 09/2013
202	if [[ "${phys}" == "new" ]]
203	then
204	tra=999
205	else
206	echo Number of tracers ? ; read tra
207	if [ ${tra} -eq 0 ]
208	then
209	tra=1
210	fi
211	fi
212	fi
213	# 'from scratch' case
214	if [ ${from_scratch} -eq 1 ]
215	then
216	echo "***** I ERASE THE FOLDER "${conf_wrf}
217	\rm -rf ${conf_wrf}
218	fi
219	# folder
220
221	mkdir ${conf_wrf} 2> /dev/null
222	if [[ "$?" == 0 ]]
223	then
224	echo new folder ... link sources
225	#if [[ "${phys}" == "new" ]]
226	#then
227	# \rm copy_model_tmp > /dev/null 2> /dev/null
228	# sed s+"mars_lmd"+"mars_lmd_new"+g SRC/SCRIPTS/copy_model > copy_model_tmp
229	# if [[ "${config}" == "les" ]]
230	# then
231	# sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g copy_model_tmp > yeah
232	# mv yeah copy_model_tmp
233	# fi
234	#chmod 755 copy_model_tmp
235	#./copy_model_tmp
236	#\rm copy_model_tmp
237	###############################################
238	./SRC/SCRIPTS/copy_model -p ${phys} -c ${config}
239	mv zeWRFV2 ${conf_wrf}/WRFV2
240	###############################################
241	if [[ "${phys}" == "new" ]]
242	then
243	cd ${conf_wrf}/WRFV2
244	#ln -sf mars_lmd_new mars_lmd
245	if [[ "${config}" != "les" ]]
246	then
247	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
248	else
249	cp -L ../../SRC/LES/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
250	fi
251	cd phys
252	ln -sf module_lmd_driver.F.new module_lmd_driver.F
253	cd ..
254
255	## remove files adapted to parallel GCM and useless for mesoscale
256	#cd mars_lmd
257	#cd libf/phymars
258	#\rm tabfi* soil_settings* phyetat0* phyredem* iostart* writediagfi* mkstat* writediagsoil* eofdump* wstats* inistats* mod_*
259	#\rm iniphysiq* init_phys_lmdz* comgeomphy* planetwide_mod*
260	#mv ../dyn3d/control_mod.F90 .
261	#cd ../..
262	#cd ..
263
264	else
265	# if [[ "${config}" == "les" ]]
266	# then
267	# #### NB: With physics: LES folder // Without physics : LESnophys_ folder
268	# #### ---- because differences in 'modif' folder ----
269	# #sed s+"PWD/SRC/"+"PWD/SRC/LES$phys/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
270	# sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
271	# else
272	# cp SRC/SCRIPTS/copy_model copy_model_tmp
273	# fi
274	#chmod 755 copy_model_tmp
275	#./copy_model_tmp
276	#\rm copy_model_tmp
277	#mv zeWRFV2 ${conf_wrf}/WRFV2
278	cd ${conf_wrf}/WRFV2
279	cd Registry ; ./Registry.bash ; cd ..
280	fi
281	#### sparadrap consequent a l'utilisation de copy_model pour les liens
282	#### -- car alors il manque fftpack
283	if [[ "${config}" == "les" ]]
284	then
285	#if [[ "${phys}" == "nophys_" ]]
286	#then
287	# ## voir ci-dessus pour le folder
288	# cp ../../SRC/LES$phys/correcfft ./
289	#else
290	# cp ../../SRC/LES/correcfft ./
291	#fi
292	cp ../../SRC/LES/correcfft ./
293	./correcfft
294	\rm correcfft
295	fi
296	else
297	cd ${conf_wrf}/WRFV2
298	if [ ${fresh_start} -eq 1 ]
299	then
300	echo '*** FRESH START, I clean everything'
301	### clean the whole place
302	clean -a > /dev/null 2> /dev/null
303	### get a possibly modified registry !
304	if [[ "${phys}" == "new" ]]
305	then
306	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
307	else
308	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
309	fi
310	if [[ "${config}" == "les" ]]
311	then
312	cp ../../SRC/LES/WRFV2/Registry/Registry.EM Registry/
313	fi
314	### ensure the model will be recompiled from scratch with correct registry
315	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
316	# answer='y' ## a voir... pas si sur
317	# else
318	# if [[ "${phys}" != "nophys_" ]]
319	# then
320	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
321	# case ${answer} in
322	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
323	# *) answer='no' ;;
324	# esac
325	# fi
326	fi
327	fi
328
329	# summary
330	echo '**********************'
331	echo '*** Your folder is ...'
332	echo '**********************'
333	echo ${conf_wrf}
334	echo '**********************'
335	echo '****************************************'
336	echo so ...
337	echo your computer is ${machine} bits
338	echo ${compilo} is your compiler
339	if [[ "${compilo}" = "mpi" ]]
340	then
341	echo MPICH is in ${WHERE_MPI}
342	fi
343	echo you have ${dom} domains
344	if [[ "${phys}" == "new" ]]
345	then
346	echo number of processors can be changed without recompiling
347	echo x points can be changed without recompiling
348	echo y points can be changed without recompiling
349	echo z points can be changed without recompiling
350	echo number of tracers can be changed without recompiling
351	else
352	echo you will use ${numproc} processors
353	echo you have ${lon} x points
354	echo ' '${lat} y points
355	echo ' '${level} z points
356	echo ' '${tra} tracers
357	fi
358	echo '****************************************'
359	# save answer
360	\rm last 2> /dev/null
361	touch last
362	echo ${reply} >> last
363	if [[ "${phys}" != "new" ]]
364	then
365	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
366	then
367	echo ${numproc} >> last
368	fi
369	echo ${lon} >> last
370	echo ${lat} >> last
371	echo ${level} >> last
372	fi
373	echo ${dom} >> last
374	if [[ "${phys}" != *"new" ]]
375	then
376	echo ${tra} >> last
377	fi
378
379	#------------
380	# log files
381	#------------
382	\rm log_compile 2> /dev/null
383	\rm log_error 2> /dev/null
384
385	#-----------------
386	# configure WRF
387	#-----------------
388	mv configure.wrf configure.wrf.bak 2> /dev/null
389	########################
390	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
391
392	#### in this case options are different because for LES, WRFV3 is used
393	if [[ "${config}" == "les" ]]
394	then
395	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
396	fi
397
398	case ${conf_wrf_forall} in
399
400	#######LES-specific (WRFV3-based) -- previously in 'makeles'
401	#######
402
403	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
404	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
405	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
406	sed s+"-lnetcdf"+"-lnetcdf -L../$phys/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
407	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
408	then
409	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
410	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
411	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
412	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
413	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
414	else
415	#sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
416	#sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
417	#### OPENMPI
418	sed s+"mpif90 -f90=\$(SFC)"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
419	sed s+"mpicc -cc=\$(SCC)"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
420	fi
421	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
422	### pas forcement necessaire ici mais OK
423	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
424	\rm conf > /dev/null ;;
425
426	lesmpifort_64) ## MPI (dm) 64 bits IFORT
427	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
428	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
429	sed s+"-lnetcdf"+"-lnetcdf -L../$phys/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
430	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
431	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
432	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
433	sed s+"O3"+"O3 -mcmodel=large -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
434	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
435	#sed s+"-lnetcdf -lnetcdff"+"-lnetcdf -lnetcdff -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
436	if [ ${debug} -ne 0 ] # not working for xlf!
437	then
438	echo 'DEBUG DEBUG DEBUG DEBUG'
439	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
440	mv -f yeah configure.wrf
441	fi
442	\rm conf > /dev/null ;;
443
444	#######
445	#######LES-specific (WRFV3-based) -- previously in 'makeles'
446
447	#######TEST TEST
448	# GFORTRAN, 64 bits, no nesting
449	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
450	echo 15 \| configure > log_compile 2> log_error
451	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
452	sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
453	#######TEST TEST
454	# PGF90, 32 bits, no nesting
455	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
456	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
457	# PGF90, 32 bits, nesting
458	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
459	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
460	# PGF90, 64 bits, no nesting
461	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
462	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
463	#sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
464	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
465	# PGF90, 64 bits, nesting
466	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
467	echo 4 \| configure > log_compile 2> log_error
468	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
469	# G95, 32 bits, no nesting
470	g95_32_single) echo 13 \| configure > log_compile 2> log_error
471	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
472	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
473	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
474	echo 14 \| configure > log_compile 2> log_error
475	##### marche pas ....
476	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
477	#sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
478	#sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
479	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
480	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
481	# IFORT, 64 bits, no nesting
482	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
483	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
484	if [ ${debug} -ne 0 ] # not working for xlf!
485	then
486	echo 'DEBUG DEBUG DEBUG DEBUG'
487	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
488	mv -f yeah configure.wrf
489	fi
490	## !!! NETCDF must be defined
491	sed s+"lio_grib_share"+"lio_grib_share -L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
492	mv -f yeah configure.wrf ;;
493	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
494	echo 9 \| configure > log_compile 2> log_error
495	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
496	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
497	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
498	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
499	sed s+"-O1"+"-O1 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
500	sed s+"-O2"+"-O2 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
501	sed s+"-O3"+"-O3 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
502	if [ ${debug} -ne 0 ] # not working for xlf!
503	then
504	echo 'DEBUG DEBUG DEBUG DEBUG'
505	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
506	mv -f yeah configure.wrf
507	fi
508	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
509	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
510	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
511	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
512	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
513	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
514	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
515	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
516	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
517	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
518	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
519	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
520	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
521	### necessary even if mpi-selector is used (no need in makegcm though)
522	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
523	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
524	## !!! NETCDF must be defined
525	sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
526	mv -f yeah configure.wrf
527	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
528	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
529	mv -f yeah configure.wrf ;;
530	# MPICH, 64 bits, no nesting / nesting
531	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
532	echo 3 \| configure > log_compile 2> log_error
533	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
534	### the following line is necessary because readtesassim has a line "use netcdf" in it!
535	sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
536	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
537	#sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT -w -O3"+g > yeah
538	#\| sed s+"fastsse"+"fast"+g > yeah
539	mv -f yeah configure.wrf ;;
540	# #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
541	# ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
542	# ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
543	#sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah
544	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
545	#sed s+"-fastsse"+""+g configure.wrf > yeah
546	#sed s+"-fastsse"+"-fast"+g configure.wrf > yeah
547	#sed s+"-fastsse"+"-Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8 -Mfprelaxed"+g configure.wrf > yeah
548	#mv -f yeah configure.wrf ;;
549	# MPICH, 64 bits, OK with periodic BC but no positive definite
550	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
551	echo 2 \| configure > log_compile 2> log_error
552	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
553	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
554	mv -f yeah configure.wrf ;;
555	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
556	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
557	echo 3 \| configure > log_compile 2> log_error
558	sed -f physics.sed configure.wrf > yeah
559	mv -f yeah configure.wrf ;;
560	# ANYTHING ELSE
561	*) echo NO PRESETS ...
562	if [ ${donotallow} -eq 0 ]
563	then
564	configure
565	else
566	# problem when an input file is used
567	echo 'please cd to '$PWD' and type ./configure'
568	exit
569	fi ;;
570	esac
571	########################
572
573
574	### here a case structure would be great
575
576	if [[ "${phys}" == "new" ]]
577	then
578	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
579	then
580	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
581	else
582	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
583	fi
584	mv -f yeah configure.wrf
585	fi
586
587	### SCENARIO SCENARIO SCENARIO
588	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment?
589	then
590	# precompiling flag in WRF part
591	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
592	mv -f yeah configure.wrf
593	# precompiling flag in LMD part
594	cd $phys
595	cp -Lrf makegcm_${compilo} yeah
596	\rm makegcm_${compilo}
597	sed s+"-DMESOSCALE"+"-D${scenario} -DMESOSCALE"+ yeah > makegcm_${compilo}
598	chmod 755 makegcm_${compilo}
599	\rm yeah
600	cd ..
601	fi
602
603	################
604	#if [[ "${phys}" == "nophys_" ]]
605	#then
606	# if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
607	# then
608	# sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
609	# sed s+"-L../$phys/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
610	# else
611	# ### not tested yet but should be working
612	# echo CAUTION CAUTION CAUTION NOT FULLY TESTED
613	# sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
614	# sed s+"-L../$phys/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
615	# fi
616	#fi
617	################
618
619	if [ ${debug} -ne 0 ] # not working for xlf!
620	then
621	echo 'DEBUG DEBUG DEBUG DEBUG'
622	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
623	#sed s+"# -g"+"-g -Ktrap=fp -Mbounds"+g configure.wrf > yeah
624	#sed s+"# -g"+"-g"+g configure.wrf > yeah
625	mv -f yeah configure.wrf
626	fi
627
628	#exit
629	##################################################
630	# compile physics
631	##################################################
632	if [ ${donotcompilephys} -eq 0 ]
633	then
634
635	cd $phys/
636
637	if [[ "${phys}" == "new" ]]
638	then
639	divx=1
640	divy=1
641	else
642	# required size
643	#----------------
644	case ${numproc} in
645	1) divx=1 ; divy=1 ;;
646	2) divx=1 ; divy=2 ;;
647	4) divx=2 ; divy=2 ;;
648	6) divx=2 ; divy=3 ;;
649	8) divx=2 ; divy=4 ;;
650	12) divx=3 ; divy=4 ;;
651	16) divx=4 ; divy=4 ;;
652	20) divx=4 ; divy=5 ;;
653	24) divx=4 ; divy=6 ;;
654	32) divx=4 ; divy=8 ;;
655	64) divx=8 ; divy=8 ;;
656	128) divx=8 ; divy=16 ;;
657	*) echo not yet supported ; exit ;;
658	esac
659	fi
660	physx=$(expr ${lon} - 1)
661	restex=$(expr ${physx} \% ${divx})
662	physy=$(expr ${lat} - 1)
663	restey=$(expr ${physy} \% ${divy})
664	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
665	then
666	echo nx-1 shall be divided by ${divx}
667	echo ny-1 shall be divided by ${divy}
668	exit
669	fi
670	physx=$(expr ${physx} \/ ${divx})
671	physy=$(expr ${physy} \/ ${divy})
672	physz=$(expr ${level} - 1)
673
674	# change this if you change num_soil_layers in WRF
675	# -- default is 10
676	if [[ "${phys}" == "new" ]]
677	then
678	soilsize=18 ## nouvelle physique. ne sert a rien ici. voir comsoil.
679	else
680	soilsize=10
681	fi
682
683	# GCM environment variables
684	#--------------------------
685	export LMDGCM=$PWD
686	export LIBOGCM=$PWD/libo
687
688	# generate the appropriate dimphys
689	#---------------------------------
690	cd libf/phymars
691	\rm dimphys.h 2> /dev/null
692	# if [[ "${phys}" == "newphys_" ]]
693	# then
694	# ln -sf ../../meso_dimphys.h_ref . ## ne sert plus !!
695	# else
696	if [[ "${phys}" == "mars_lmd" ]]
697	then
698	physize=$(expr ${physx} \* ${physy})
699	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
700	head -15 dimphys.h
701	fi
702	#### TEST new new phys
703	#if [[ "${phys}" == "newphys_" ]]
704	#then
705	# touch gr_fi_dyn.F.lien
706	# ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
707	################################
708	################################
709	################################
710	#fi
711	####
712	####
713	cd ../..
714
715	# prepare for nesting
716	#---------------------
717	cd libf
718	duplicate${dom} 2> /dev/null
719	cd ..
720
721	# compile physics
722	#--------------------------
723	\rm libf/grid/dimensions.h 2> /dev/null
724	\rm -rf libo/* 2> /dev/null
725	echo 1. compiling LMD physics ...
726	echo compilation info in:
727	echo $PWD/libo/log_compile_phys
728
729	if [ ${debug} -ne 0 ]
730	then
731	echo 'DEBUG DEBUG DEBUG DEBUG'
732	nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
733	else
734	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
735	fi
736	echo ... done
737	# clean the duplicate routines
738	cd libf
739	duplicate1 2> /dev/null
740	cd ..
741
742	# merge LMD executables in one lib
743	#--------------------------------------
744	cd libo
745	mkdir temp
746	#cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp
747	cp -f LINUX/.a temp/
748	cd temp
749	ar x libbibio.a
750	ar x libphymars.a
751	ar x libaeronomars.a
752	\rm *.a
753	ar r liblmd.a *
754	cp -f liblmd.a ..
755	cd ..
756	\rm -r temp
757	nm liblmd.a > liblmd_content
758	# finish merge
759	cd ..
760	if [[ "${phys}" == "new" ]]
761	then
762	# include modules for interfacing
763	mv *.mod ../inc/
764	fi
765
766	# save a copy
767	#--------------
768	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}
769	echo '****************************************'
770
771	# ok
772	#----
773	cd ..
774
775	# manage nest includes in module_lmd_driver.F
776	#----
777	cp call_meso_inifis$dom.inc call_meso_inifis.inc
778	cp call_meso_physiq$dom.inc call_meso_physiq.inc
779
780
781	fi
782	##################################################
783	# END compile physics
784	##################################################
785
786	#------------------
787	# compile WRF
788	#------------------
789	if [ ${justphys} -eq 0 ]
790	then
791
792	echo 2. compiling WRF dynamical core ...
793
794	#if [[ "${phys}" == "nophys_" ]]
795	#then
796	# echo 'NO LMD PHYSICS included'
797	#else
798	# if [[ ! ( -f "call_meso_physiq.inc" ) ]]
799	# then
800	# echo 'did you compile the physics ? no call_meso_physiq.inc !'
801	# exit
802	# fi
803	#fi
804
805	# be sure to compile with the most recent physics
806	touch phys/module_lmd_driver.F
807
808	# talk to user
809	echo '>>> compiling ... this may be long ... <<<'
810	echo check progress in:
811	echo $PWD/log_compile
812	echo check possible errors in:
813	echo $PWD/log_error
814
815	# compile ...
816	echo '>>> YOUR CONFIG IS : '${config}
817	case ${config} in
818	'real') ./compile em_real > log_compile 2> log_error
819	# save executables
820	cd main
821	if [[ -f real.exe ]]
822	then
823	echo 'Looks good ! real.exe is here...'
824	fi
825	if [[ -f wrf.exe ]]
826	then
827	echo 'Looks good ! wrf.exe is here...'
828	fi
829	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
830	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
831	cd .. ;;
832	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
833	#echo '>>> YOUR CONFIG IS : '${config}
834	./compile em_quarter_ss > log_compile 2> log_error
835	# save executables
836	cd main
837	if [[ -f ideal.exe ]]
838	then
839	echo 'Looks good ! ideal.exe is here...'
840	fi
841	if [[ -f wrf.exe ]]
842	then
843	echo 'Looks good ! wrf.exe is here...'
844	fi
845	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
846	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
847	cd .. ;;
848	'les') #echo '>>> YOUR CONFIG IS : '${config}
849	mkdir 'test/em_les' 2> /dev/null
850	./compile em_les > log_compile 2> log_error
851	# save executables
852	cd main
853	if [[ -f ideal.exe ]]
854	then
855	echo 'Looks good ! ideal.exe is here...'
856	fi
857	if [[ -f wrf.exe ]]
858	then
859	echo 'Looks good ! wrf.exe is here...'
860	fi
861	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
862	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
863	cd .. ;;
864	*) echo not supported... please use ; echo ideal les ; exit ;;
865	esac
866	echo '*****last lines from log_error*******'
867	tail -n 20 log_error
868	fi
869
870	# the end
871	echo '****************************************'
872	echo 'done.'
873	echo '****************************************'
874	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}
875	mv last ../../
876	svn info ../../ > ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.svn.info
877
878
879
880	# link latest compiled folder as LATEST
881	cd ../../
882	rm -rf LATEST
883	ln -sf ${conf_wrf} LATEST
884
885	# add here specific messages
886	if [[ "${dom}" != "1" ]]
887	then
888	nest=$(expr ${lon} + 4)
889	echo NB: in namelist.input, please set:
890	echo '
891	max_dom = '$dom'
892	s_we = 1,1,
893	e_we = '$lon','$nest',
894	s_sn = 1,1,
895	e_sn = '$lat','$nest',
896	s_vert = 1,1,
897	e_vert = '$level','$level','
898	fi
899
900

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