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makemeso @ 1408

Last change on this file since 1408 was 1389, checked in by aslmd, 11 years ago
changed makemeso to compile NOPHYS case with the regular LES case. should allow subsequent removal of the LESnophys_ folder (after checking that everything was transferred)
Property svn:executable set to ``*
File size: 36.1 KB

Line
1	#! /bin/bash
2
3
4	##################################
5	# makemeso allows you to compile #
6	# WRF with modified LMD physics #
7	##################################
8
9	##############################
10	# Author: A. Spiga #
11	# New version : October 2008 #
12	# Last update : January 2009 #
13	# November 09 #
14	# January 11 #
15	##############################
16
17	###############################
18	#### Type makemeso -h for help
19	###############################
20
21
22
23	##############################################################################################
24	##############################################################################################
25	##############################################################################################
26	##############################################################################################
27
28	donotcompile=0
29	donotallow=0
30	config=''
31	donotcompilephys=0
32	justphys=0
33	debug=0
34	fresh_start=0
35	phys=""
36	scenario=""
37	from_scratch=0
38	while getopts "drc:njhgpfs:xe" options; do
39	case $options in
40	d ) donotcompile=1;; ## just to check the compile folder
41	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
42	c ) config="${OPTARG}";; ## idealized cases
43	n ) donotcompilephys=1;; ## do not recompile physics
44	j ) justphys=1;; ## just compile LMD physics
45	g ) debug=1;; ## debug mode
46	p ) phys="newphys_";; ## with new physics
47	f ) fresh_start=1;; ## a fresh start
48	e ) from_scratch=1;; ## a fresh start with a completely new folder
49	s ) scenario="${OPTARG}";; ## a specific scenario, you need a corresponding "mars_lmd_..."
50	x ) donotcompile=1;phys="nophys_";donotcompilephys=1;; ## a case with no LMD physics included
51	h ) echo "
52	# Use:
53	#
54	# makemeso ## basic use (real-case configuration)
55	#
56	# makemeso -d ## no compilation, just check the name of the compile folder
57	#
58	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
59	# makemeso -c les ## large-eddy simulations mode based on WRFV3
60	#
61	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
62	#
63	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
64	# makemeso -r < last ## basic use + skip questions + only known config
65	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
66	#
67	# makemeso -j ## just compile the LMD physics
68	#
69	# makemeso -g ## debug mode
70	#
71	# makemeso -h ## display options
72	#
73	# makemeso -p ## with new LMD physics
74	#
75	# makemeso -f ## fresh start [clean -a]
76	#
77	# makemeso -e ## a completely new recompile with erasing ALL compiling folder
78	#
79	# makemeso -s storm ## a specific scenario, you need a corresponding mars_lmd_... (only for newphys)
80	#
81	# makemeso -x ## a case with no LMD physics included
82	" ; exit ;;
83	esac
84	done
85
86	#--------------
87	# talk w/ user
88	#--------------
89	echo '****************************************'
90	echo ' LMD Mesoscale Model Compiler. Welcome.'
91	echo '****************************************'
92	if [[ "${phys}" == "newphys_" ]]
93	then
94	echo '*********with new physics***********'
95	echo '****************************************'
96	fi
97	# computer
98	uname -a \| grep x86_64 > /dev/null
99	if [[ "$?" == 0 ]]
100	then
101	machine='64'
102	else
103	machine='32'
104	fi
105	# compiler
106	echo "Supported compiler options are "
107	echo " <1> pgf90"
108	echo " <2> g95"
109	echo " <3> pgf90 + mpi"
110	echo " <4> ifort"
111	echo " <5> ifort + mpi"
112	echo " <7> xlf + mpi (IBM AIX)"
113	echo "Your choice ?" ; read reply
114	case ${reply} in
115	1) compilo='pgf' ; numproc=1 ;;
116	2) compilo='g95' ; numproc=1 ;;
117	3) compilo='mpi'
118	if [[ "${WHERE_MPI}" = "" ]]
119	then
120	echo Please initialize the variable WHERE_MPI in your environnement
121	exit
122	fi ;;
123	4) compilo='ifort' ; numproc=1 ;;
124	5) compilo='mpifort' ;;
125	7) compilo='mpixlf' ;;
126	### for tests
127	99) compilo='gnu' ; numproc=1 ;;
128	*) echo not supported by this script ; exit ;;
129	esac
130	# number of processors
131	if [ "${phys}" == "newphys_" ] \|\| [ "${phys}" == "nophys_" ]
132	then
133	numproc=999
134	else
135	case ${reply} in
136	3) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
137	5) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
138	7) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
139	esac
140	fi
141
142	# dimensions
143	if [ ${donotcompile} -eq 0 ]
144	then
145	# ngrid: now dynamically set in newphys 03/2014
146	if [[ "${phys}" == "newphys_" ]]
147	then
148	lon=999
149	lat=999
150	level=999
151	else
152	echo Grid points in longitude ? ; read lon
153	echo Grid points in latitude ? ; read lat
154	echo Number of vertical levels ? ; read level
155	fi
156	fi
157	echo Number of domains ? ; read dom
158
159	###PB lecture dom si < last
160
161	case ${dom} in
162	1) single='_single' ;;
163	*) single='_nest' ;;
164	esac
165	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
166	then
167	single=''
168	fi
169
170	testflag=''
171	####
172	#testflag='_test'
173	####
174
175	conf_wrf="${config}${scenario}${phys}${compilo}_${machine}${single}${testflag}"
176
177	if [ ${debug} -eq 1 ]
178	then
179	conf_wrf="debug_${conf_wrf}"
180	fi
181
182	\rm what_folder 2> /dev/null
183	echo ${conf_wrf} > what_folder
184	if [ ${donotcompile} -eq 1 ]
185	then
186	#\rm what_folder 2> /dev/null
187	#echo '**********************'
188	#echo '*** Your folder is ...'
189	#echo '**********************'
190	#echo ${conf_wrf} \| tee what_folder
191	#cat what_folder
192	#echo ${conf_wrf} > what_folder
193	#echo ${reply} > what_compilo
194	#echo ${numproc} > what_numproc
195	if [[ "${phys}" != "nophys_" ]]
196	then
197	exit
198	fi
199	else
200	# tracers: now dynamically set in newphys 09/2013
201	if [[ "${phys}" == "newphys_" ]]
202	then
203	tra=999
204	else
205	echo Number of tracers ? ; read tra
206	if [ ${tra} -eq 0 ]
207	then
208	tra=1
209	fi
210	fi
211	fi
212	# 'from scratch' case
213	if [ ${from_scratch} -eq 1 ]
214	then
215	echo "***** I ERASE THE FOLDER "${conf_wrf}
216	\rm -rf ${conf_wrf}
217	fi
218	# folder
219	mkdir ${conf_wrf} 2> /dev/null
220	if [[ "$?" == 0 ]]
221	then
222	echo new folder ... link sources
223	if [[ "${phys}" == "newphys_" ]]
224	then
225	\rm copy_model_tmp > /dev/null 2> /dev/null
226	if [[ "${scenario}" == "" ]]
227	then
228	sed s+"mars_lmd"+"mars_lmd_new"+g SRC/SCRIPTS/copy_model > copy_model_tmp
229	else
230	echo SCENARIO ${scenario} DID YOU INCLUDE THE SPECIFIC folder ? ; read dummy
231	sed s+"mars_lmd"+"mars_lmd_new_${scenario}"+g SRC/SCRIPTS/copy_model > copy_model_tmp
232	if [[ "${config}" == "les" ]]
233	then
234	echo "NOT SUPPORTED, check options"
235	exit
236	fi
237	fi
238	if [[ "${config}" == "les" ]]
239	then
240	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g copy_model_tmp > yeah
241	mv yeah copy_model_tmp
242	fi
243	chmod 755 copy_model_tmp
244	./copy_model_tmp
245	\rm copy_model_tmp
246	mv zeWRFV2 ${conf_wrf}/WRFV2
247	cd ${conf_wrf}/WRFV2
248	if [[ "${scenario}" == "" ]]
249	then
250	ln -sf mars_lmd_new mars_lmd
251	if [[ "${phys}" == "newphys_" ]]
252	then
253	if [[ "${config}" != "les" ]]
254	then
255	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
256	else
257	cp -L ../../SRC/LES/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
258	fi
259	fi
260	cd phys
261	ln -sf module_lmd_driver.F.new module_lmd_driver.F
262	cd ..
263	else
264	ln -sf mars_lmd_new_${scenario} mars_lmd
265	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/Registry.EM mars_lmd_new_${scenario}/
266	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/*.inc mars_lmd_new_${scenario}/
267	cd Registry ; ln -sf ../mars_lmd_new_${scenario}/Registry.EM . ; cd ..
268	fi
269
270	# remove files adapted to parallel GCM and useless for mesoscale
271	cd mars_lmd
272	cd libf/phymars
273	\rm tabfi* soil_settings* phyetat0* phyredem* iostart* writediagfi* mkstat* writediagsoil* eofdump* wstats* inistats* mod_*
274	\rm iniphysiq* init_phys_lmdz* comgeomphy* planetwide_mod*
275	mv ../dyn3d/control_mod.F90 .
276	cd ../..
277	cd ..
278
279	else
280	if [[ "${config}" == "les" ]]
281	then
282	#### NB: With physics: LES folder // Without physics : LESnophys_ folder
283	#### ---- because differences in 'modif' folder ----
284	#sed s+"PWD/SRC/"+"PWD/SRC/LES$phys/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
285	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
286	else
287	cp SRC/SCRIPTS/copy_model copy_model_tmp
288	fi
289	chmod 755 copy_model_tmp
290	./copy_model_tmp
291	\rm copy_model_tmp
292	mv zeWRFV2 ${conf_wrf}/WRFV2
293	cd ${conf_wrf}/WRFV2
294	cd Registry ; ./Registry.bash ; cd ..
295	fi
296	#### sparadrap consequent a l'utilisation de copy_model pour les liens
297	#### -- car alors il manque fftpack
298	if [[ "${config}" == "les" ]]
299	then
300	#if [[ "${phys}" == "nophys_" ]]
301	#then
302	# ## voir ci-dessus pour le folder
303	# cp ../../SRC/LES$phys/correcfft ./
304	#else
305	# cp ../../SRC/LES/correcfft ./
306	#fi
307	cp ../../SRC/LES/correcfft ./
308	./correcfft
309	\rm correcfft
310	fi
311	else
312	cd ${conf_wrf}/WRFV2
313	if [ ${fresh_start} -eq 1 ]
314	then
315	echo '*** FRESH START, I clean everything'
316	### clean the whole place
317	clean -a > /dev/null 2> /dev/null
318	### get a possibly modified registry !
319	if [[ "${scenario}" == "" ]]
320	then
321	if [[ "${phys}" == "newphys_" ]]
322	then
323	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
324	else
325	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
326	fi
327	fi
328	if [[ "${config}" == "les" ]]
329	then
330	cp ../../SRC/LES/WRFV2/Registry/Registry.EM Registry/
331	fi
332	### ensure the model will be recompiled from scratch with correct registry
333	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
334	# answer='y' ## a voir... pas si sur
335	# else
336	# if [[ "${phys}" != "nophys_" ]]
337	# then
338	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
339	# case ${answer} in
340	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
341	# *) answer='no' ;;
342	# esac
343	# fi
344	fi
345	fi
346
347	# summary
348	echo '**********************'
349	echo '*** Your folder is ...'
350	echo '**********************'
351	echo ${conf_wrf}
352	echo '**********************'
353	echo '****************************************'
354	echo so ...
355	echo your computer is ${machine} bits
356	echo ${compilo} is your compiler
357	if [[ "${compilo}" = "mpi" ]]
358	then
359	echo MPICH is in ${WHERE_MPI}
360	fi
361	echo you have ${dom} domains
362	if [[ "${phys}" == "newphys_" ]]
363	then
364	echo number of processors can be changed without recompiling
365	echo x points can be changed without recompiling
366	echo y points can be changed without recompiling
367	echo z points can be changed without recompiling
368	echo number of tracers can be changed without recompiling
369	else
370	echo you will use ${numproc} processors
371	echo you have ${lon} x points
372	echo ' '${lat} y points
373	echo ' '${level} z points
374	echo ' '${tra} tracers
375	fi
376	echo '****************************************'
377	# save answer
378	\rm last 2> /dev/null
379	touch last
380	echo ${reply} >> last
381	if [[ "${phys}" != "newphys_" ]]
382	then
383	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
384	then
385	echo ${numproc} >> last
386	fi
387	echo ${lon} >> last
388	echo ${lat} >> last
389	echo ${level} >> last
390	fi
391	echo ${dom} >> last
392	if [[ "${phys}" != "newphys_" ]]
393	then
394	echo ${tra} >> last
395	fi
396
397	#------------
398	# log files
399	#------------
400	\rm log_compile 2> /dev/null
401	\rm log_error 2> /dev/null
402
403	#-----------------
404	# configure WRF
405	#-----------------
406	mv configure.wrf configure.wrf.bak 2> /dev/null
407	########################
408	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
409
410	#### in this case options are different because for LES, WRFV3 is used
411	if [[ "${config}" == "les" ]]
412	then
413	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
414	fi
415
416	case ${conf_wrf_forall} in
417
418	#######LES-specific (WRFV3-based) -- previously in 'makeles'
419	#######
420
421	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
422	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
423	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
424	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
425	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
426	then
427	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
428	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
429	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
430	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
431	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
432	else
433	#sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
434	#sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
435	#### OPENMPI
436	sed s+"mpif90 -f90=\$(SFC)"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
437	sed s+"mpicc -cc=\$(SCC)"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
438	fi
439	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
440	### pas forcement necessaire ici mais OK
441	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
442	\rm conf > /dev/null ;;
443
444	lesmpifort_64) ## MPI (dm) 64 bits IFORT
445	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
446	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
447	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
448	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
449	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
450	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
451	sed s+"O3"+"O3 -mcmodel=large -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
452	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
453	if [ ${debug} -ne 0 ] # not working for xlf!
454	then
455	echo 'DEBUG DEBUG DEBUG DEBUG'
456	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
457	mv -f yeah configure.wrf
458	fi
459	\rm conf > /dev/null ;;
460
461	#######
462	#######LES-specific (WRFV3-based) -- previously in 'makeles'
463
464	#######TEST TEST
465	# GFORTRAN, 64 bits, no nesting
466	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
467	echo 15 \| configure > log_compile 2> log_error
468	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
469	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
470	#######TEST TEST
471	# PGF90, 32 bits, no nesting
472	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
473	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
474	# PGF90, 32 bits, nesting
475	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
476	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
477	# PGF90, 64 bits, no nesting
478	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
479	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
480	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
481	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
482	# PGF90, 64 bits, nesting
483	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
484	echo 4 \| configure > log_compile 2> log_error
485	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
486	# G95, 32 bits, no nesting
487	g95_32_single) echo 13 \| configure > log_compile 2> log_error
488	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
489	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
490	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
491	echo 14 \| configure > log_compile 2> log_error
492	##### marche pas ....
493	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
494	#sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
495	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
496	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
497	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
498	# IFORT, 64 bits, no nesting
499	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
500	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
501	if [ ${debug} -ne 0 ] # not working for xlf!
502	then
503	echo 'DEBUG DEBUG DEBUG DEBUG'
504	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
505	mv -f yeah configure.wrf
506	fi
507	## !!! NETCDF must be defined
508	sed s+"lio_grib_share"+"lio_grib_share -L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
509	mv -f yeah configure.wrf ;;
510	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
511	echo 9 \| configure > log_compile 2> log_error
512	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
513	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
514	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
515	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
516	if [ ${debug} -ne 0 ] # not working for xlf!
517	then
518	echo 'DEBUG DEBUG DEBUG DEBUG'
519	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
520	mv -f yeah configure.wrf
521	fi
522	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
523	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
524	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
525	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
526	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
527	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
528	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
529	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
530	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
531	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
532	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
533	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
534	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
535	### necessary even if mpi-selector is used (no need in makegcm though)
536	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
537	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
538	## !!! NETCDF must be defined
539	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
540	mv -f yeah configure.wrf
541	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
542	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
543	mv -f yeah configure.wrf ;;
544	# MPICH, 64 bits, no nesting / nesting
545	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
546	echo 3 \| configure > log_compile 2> log_error
547	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
548	### the following line is necessary because readtesassim has a line "use netcdf" in it!
549	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
550	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
551	#sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT -w -O3"+g > yeah
552	#\| sed s+"fastsse"+"fast"+g > yeah
553	mv -f yeah configure.wrf ;;
554	# #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
555	# ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
556	# ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
557	#sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah
558	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
559	#sed s+"-fastsse"+""+g configure.wrf > yeah
560	#sed s+"-fastsse"+"-fast"+g configure.wrf > yeah
561	#sed s+"-fastsse"+"-Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8 -Mfprelaxed"+g configure.wrf > yeah
562	#mv -f yeah configure.wrf ;;
563	# MPICH, 64 bits, OK with periodic BC but no positive definite
564	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
565	echo 2 \| configure > log_compile 2> log_error
566	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
567	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
568	mv -f yeah configure.wrf ;;
569	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
570	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
571	echo 3 \| configure > log_compile 2> log_error
572	sed -f mars.sed configure.wrf > yeah
573	mv -f yeah configure.wrf ;;
574	# ANYTHING ELSE
575	*) echo NO PRESETS ...
576	if [ ${donotallow} -eq 0 ]
577	then
578	configure
579	else
580	# problem when an input file is used
581	echo 'please cd to '$PWD' and type ./configure'
582	exit
583	fi ;;
584	esac
585	########################
586
587
588	### here a case structure would be great
589
590	if [[ "${phys}" == "newphys_" ]]
591	then
592	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
593	then
594	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
595	else
596	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
597	fi
598	mv -f yeah configure.wrf
599	fi
600
601	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment
602	then
603	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
604	mv -f yeah configure.wrf
605	fi
606
607	################
608	if [[ "${phys}" == "nophys_" ]]
609	then
610	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
611	then
612	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
613	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
614	else
615	### not tested yet but should be working
616	echo CAUTION CAUTION CAUTION NOT FULLY TESTED
617	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
618	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
619	fi
620	fi
621	################
622
623	if [ ${debug} -ne 0 ] # not working for xlf!
624	then
625	echo 'DEBUG DEBUG DEBUG DEBUG'
626	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
627	#sed s+"# -g"+"-g -Ktrap=fp -Mbounds"+g configure.wrf > yeah
628	#sed s+"# -g"+"-g"+g configure.wrf > yeah
629	mv -f yeah configure.wrf
630	fi
631
632
633	##################################################
634	# compile physics
635	##################################################
636	if [ ${donotcompilephys} -eq 0 ]
637	then
638
639	cd mars_lmd/
640
641	if [[ "${phys}" == "newphys_" ]]
642	then
643	divx=1
644	divy=1
645	else
646	# required size
647	#----------------
648	case ${numproc} in
649	1) divx=1 ; divy=1 ;;
650	2) divx=1 ; divy=2 ;;
651	4) divx=2 ; divy=2 ;;
652	6) divx=2 ; divy=3 ;;
653	8) divx=2 ; divy=4 ;;
654	12) divx=3 ; divy=4 ;;
655	16) divx=4 ; divy=4 ;;
656	20) divx=4 ; divy=5 ;;
657	24) divx=4 ; divy=6 ;;
658	32) divx=4 ; divy=8 ;;
659	64) divx=8 ; divy=8 ;;
660	128) divx=8 ; divy=16 ;;
661	*) echo not yet supported ; exit ;;
662	esac
663	fi
664	physx=$(expr ${lon} - 1)
665	restex=$(expr ${physx} \% ${divx})
666	physy=$(expr ${lat} - 1)
667	restey=$(expr ${physy} \% ${divy})
668	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
669	then
670	echo nx-1 shall be divided by ${divx}
671	echo ny-1 shall be divided by ${divy}
672	exit
673	fi
674	physx=$(expr ${physx} \/ ${divx})
675	physy=$(expr ${physy} \/ ${divy})
676	physz=$(expr ${level} - 1)
677
678	# change this if you change num_soil_layers in WRF
679	# -- default is 10
680	if [[ "${phys}" == "newphys_" ]]
681	then
682	soilsize=18 ## nouvelle physique. ne sert a rien ici. voir comsoil.
683	else
684	soilsize=10
685	fi
686
687	# GCM environment variables
688	#--------------------------
689	export LMDGCM=$PWD
690	export LIBOGCM=$PWD/libo
691
692	# generate the appropriate dimphys
693	#---------------------------------
694	cd libf/phymars
695	\rm dimphys.h 2> /dev/null
696	if [[ "${phys}" == "newphys_" ]]
697	then
698	ln -sf ../../meso_dimphys.h_ref . ## ne sert plus !!
699	else
700	physize=$(expr ${physx} \* ${physy})
701	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
702	head -15 dimphys.h
703	fi
704	### TEST new new phys
705	if [[ "${phys}" == "newphys_" ]]
706	then
707	touch gr_fi_dyn.F.lien
708	ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
709	###############################
710	###############################
711	###############################
712	fi
713	###
714	###
715	cd ../..
716
717	# prepare for nesting
718	#---------------------
719	cd libf
720	duplicate${dom} 2> /dev/null
721	cd ..
722
723	# compile physics
724	#--------------------------
725	\rm libf/grid/dimensions.h 2> /dev/null
726	\rm -rf libo/* 2> /dev/null
727	echo 1. compiling LMD physics ...
728	echo compilation info in:
729	echo $PWD/libo/log_compile_phys
730
731	if [ ${debug} -ne 0 ]
732	then
733	echo 'DEBUG DEBUG DEBUG DEBUG'
734	nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
735	else
736	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
737	fi
738	echo ... done
739	# clean the duplicate routines
740	cd libf
741	duplicate1 2> /dev/null
742	cd ..
743
744	# merge LMD executables in one lib
745	#--------------------------------------
746	cd libo
747	mkdir temp
748	#cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp
749	cp -f LINUX/.a temp/
750	cd temp
751	ar x libbibio.a
752	ar x libphymars.a
753	ar x libaeronomars.a
754	\rm *.a
755	ar r liblmd.a *
756	cp -f liblmd.a ..
757	cd ..
758	\rm -r temp
759	nm liblmd.a > liblmd_content
760	# finish merge
761	cd ..
762
763	if [[ "${phys}" == "newphys_" ]]
764	then
765	# include modules for interfacing
766	mv *.mod ../inc/
767	fi
768
769	# save a copy
770	#--------------
771	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}
772	echo '****************************************'
773
774	# ok
775	#----
776	cd ..
777
778	# manage nest includes in module_lmd_driver.F
779	#----
780	cp call_meso_inifis$dom.inc call_meso_inifis.inc
781	cp call_meso_physiq$dom.inc call_meso_physiq.inc
782
783
784	fi
785	##################################################
786	# END compile physics
787	##################################################
788
789	#------------------
790	# compile WRF
791	#------------------
792	if [ ${justphys} -eq 0 ]
793	then
794
795	echo 2. compiling WRF dynamical core ...
796
797	if [[ "${phys}" == "nophys_" ]]
798	then
799	echo 'NO LMD PHYSICS included'
800	else
801	if [[ ! ( -f "call_meso_physiq.inc" ) ]]
802	then
803	echo 'did you compile the physics ? no call_meso_physiq.inc !'
804	exit
805	fi
806	fi
807
808	# be sure to compile with the most recent physics
809	touch phys/module_lmd_driver.F
810
811	# talk to user
812	echo '>>> compiling ... this may be long ... <<<'
813	echo check progress in:
814	echo $PWD/log_compile
815	echo check possible errors in:
816	echo $PWD/log_error
817
818	# compile ...
819	case ${config} in
820	'') ./compile em_real > log_compile 2> log_error
821	# save executables
822	cd main
823	if [[ -f real.exe ]]
824	then
825	echo 'Looks good ! real.exe is here...'
826	fi
827	if [[ -f wrf.exe ]]
828	then
829	echo 'Looks good ! wrf.exe is here...'
830	fi
831	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
832	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
833	cd .. ;;
834	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
835	echo '>>> YOUR CONFIG IS : '${config}
836	./compile em_quarter_ss > log_compile 2> log_error
837	# save executables
838	cd main
839	if [[ -f ideal.exe ]]
840	then
841	echo 'Looks good ! ideal.exe is here...'
842	fi
843	if [[ -f wrf.exe ]]
844	then
845	echo 'Looks good ! wrf.exe is here...'
846	fi
847	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
848	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
849	cd .. ;;
850	'les') echo '>>> YOUR CONFIG IS : '${config}
851	mkdir 'test/em_les' 2> /dev/null
852	./compile em_les > log_compile 2> log_error
853	# save executables
854	cd main
855	if [[ -f ideal.exe ]]
856	then
857	echo 'Looks good ! ideal.exe is here...'
858	fi
859	if [[ -f wrf.exe ]]
860	then
861	echo 'Looks good ! wrf.exe is here...'
862	fi
863	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
864	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
865	cd .. ;;
866	*) echo not supported... please use ; echo ideal les ; exit ;;
867	esac
868	echo '*****last lines from log_error*******'
869	tail -n 20 log_error
870	fi
871
872	# the end
873	echo '****************************************'
874	echo 'done.'
875	echo '****************************************'
876	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}
877	mv last ../../
878	svn info ../../ > ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.svn.info
879
880	# add here specific messages
881	if [[ "${dom}" != "1" ]]
882	then
883	nest=$(expr ${lon} + 4)
884	echo NB: in namelist.input, please set:
885	echo '
886	max_dom = '$dom'
887	s_we = 1,1,
888	e_we = '$lon','$nest',
889	s_sn = 1,1,
890	e_sn = '$lat','$nest',
891	s_vert = 1,1,
892	e_vert = '$level','$level','
893	fi
894

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