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makemeso @ 1354

Last change on this file since 1354 was 1272, checked in by aslmd, 11 years ago
MESOSCALE. adapted scripts and manual for free vertical levels.
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Line
1	#! /bin/bash
2
3
4	##################################
5	# makemeso allows you to compile #
6	# WRF with modified LMD physics #
7	##################################
8
9	##############################
10	# Author: A. Spiga #
11	# New version : October 2008 #
12	# Last update : January 2009 #
13	# November 09 #
14	# January 11 #
15	##############################
16
17	###############################
18	#### Type makemeso -h for help
19	###############################
20
21
22
23	##############################################################################################
24	##############################################################################################
25	##############################################################################################
26	##############################################################################################
27
28	donotcompile=0
29	donotallow=0
30	config=''
31	donotcompilephys=0
32	justphys=0
33	debug=0
34	fresh_start=0
35	phys=""
36	scenario=""
37	from_scratch=0
38	while getopts "drc:njhgpfs:xe" options; do
39	case $options in
40	d ) donotcompile=1;; ## just to check the compile folder
41	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
42	c ) config="${OPTARG}";; ## idealized cases
43	n ) donotcompilephys=1;; ## do not recompile physics
44	j ) justphys=1;; ## just compile LMD physics
45	g ) debug=1;; ## debug mode
46	p ) phys="newphys_";; ## with new physics
47	f ) fresh_start=1;; ## a fresh start
48	e ) from_scratch=1;; ## a fresh start with a completely new folder
49	s ) scenario="${OPTARG}";; ## a specific scenario, you need a corresponding "mars_lmd_..."
50	x ) donotcompile=1;phys="nophys_";donotcompilephys=1;; ## a case with no LMD physics included
51	h ) echo "
52	# Use:
53	#
54	# makemeso ## basic use (real-case configuration)
55	#
56	# makemeso -d ## no compilation, just check the name of the compile folder
57	#
58	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
59	# makemeso -c les ## large-eddy simulations mode based on WRFV3
60	#
61	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
62	#
63	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
64	# makemeso -r < last ## basic use + skip questions + only known config
65	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
66	#
67	# makemeso -j ## just compile the LMD physics
68	#
69	# makemeso -g ## debug mode
70	#
71	# makemeso -h ## display options
72	#
73	# makemeso -p ## with new LMD physics
74	#
75	# makemeso -f ## fresh start [clean -a]
76	#
77	# makemeso -e ## a completely new recompile with erasing ALL compiling folder
78	#
79	# makemeso -s storm ## a specific scenario, you need a corresponding mars_lmd_... (only for newphys)
80	#
81	# makemeso -x ## a case with no LMD physics included
82	" ; exit ;;
83	esac
84	done
85
86	#--------------
87	# talk w/ user
88	#--------------
89	echo '****************************************'
90	echo ' LMD Mesoscale Model Compiler. Welcome.'
91	echo '****************************************'
92	if [[ "${phys}" == "newphys_" ]]
93	then
94	echo '*********with new physics***********'
95	echo '****************************************'
96	fi
97	# computer
98	uname -a \| grep x86_64 > /dev/null
99	if [[ "$?" == 0 ]]
100	then
101	machine='64'
102	else
103	machine='32'
104	fi
105	# compiler
106	echo "Supported compiler options are "
107	echo " <1> pgf90"
108	echo " <2> g95"
109	echo " <3> pgf90 + mpi"
110	echo " <4> ifort"
111	echo " <5> ifort + mpi"
112	echo " <7> xlf + mpi (IBM AIX)"
113	echo "Your choice ?" ; read reply
114	case ${reply} in
115	1) compilo='pgf' ; numproc=1 ;;
116	2) compilo='g95' ; numproc=1 ;;
117	3) compilo='mpi'
118	if [[ "${WHERE_MPI}" = "" ]]
119	then
120	echo Please initialize the variable WHERE_MPI in your environnement
121	exit
122	fi ;;
123	4) compilo='ifort' ; numproc=1 ;;
124	5) compilo='mpifort' ;;
125	7) compilo='mpixlf' ;;
126	### for tests
127	99) compilo='gnu' ; numproc=1 ;;
128	*) echo not supported by this script ; exit ;;
129	esac
130	# number of processors
131	if [[ "${phys}" == "newphys_" ]]
132	then
133	numproc=999
134	else
135	case ${reply} in
136	3) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
137	5) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
138	7) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
139	esac
140	fi
141
142	# dimensions
143	if [ ${donotcompile} -eq 0 ]
144	then
145	# ngrid: now dynamically set in newphys 03/2014
146	if [[ "${phys}" == "newphys_" ]]
147	then
148	lon=999
149	lat=999
150	level=999
151	else
152	echo Grid points in longitude ? ; read lon
153	echo Grid points in latitude ? ; read lat
154	echo Number of vertical levels ? ; read level
155	fi
156	fi
157	echo Number of domains ? ; read dom
158
159	###PB lecture dom si < last
160
161	case ${dom} in
162	1) single='_single' ;;
163	*) single='_nest' ;;
164	esac
165	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
166	then
167	single=''
168	fi
169
170	testflag=''
171	####
172	#testflag='_test'
173	####
174
175	conf_wrf="${config}${scenario}${phys}${compilo}_${machine}${single}${testflag}"
176
177	if [ ${debug} -eq 1 ]
178	then
179	conf_wrf="debug_${conf_wrf}"
180	fi
181
182	\rm what_folder 2> /dev/null
183	echo ${conf_wrf} > what_folder
184	if [ ${donotcompile} -eq 1 ]
185	then
186	#\rm what_folder 2> /dev/null
187	#echo '**********************'
188	#echo '*** Your folder is ...'
189	#echo '**********************'
190	#echo ${conf_wrf} \| tee what_folder
191	#cat what_folder
192	#echo ${conf_wrf} > what_folder
193	#echo ${reply} > what_compilo
194	#echo ${numproc} > what_numproc
195	if [[ "${phys}" != "nophys_" ]]
196	then
197	exit
198	fi
199	else
200	# tracers: now dynamically set in newphys 09/2013
201	if [[ "${phys}" == "newphys_" ]]
202	then
203	tra=999
204	else
205	echo Number of tracers ? ; read tra
206	if [ ${tra} -eq 0 ]
207	then
208	tra=1
209	fi
210	fi
211	fi
212	# 'from scratch' case
213	if [ ${from_scratch} -eq 1 ]
214	then
215	echo "***** I ERASE THE FOLDER "${conf_wrf}
216	\rm -rf ${conf_wrf}
217	fi
218	# folder
219	mkdir ${conf_wrf} 2> /dev/null
220	if [[ "$?" == 0 ]]
221	then
222	echo new folder ... link sources
223	if [[ "${phys}" == "newphys_" ]]
224	then
225	\rm copy_model_tmp > /dev/null 2> /dev/null
226	if [[ "${scenario}" == "" ]]
227	then
228	sed s+"mars_lmd"+"mars_lmd_new"+g SRC/SCRIPTS/copy_model > copy_model_tmp
229	else
230	echo SCENARIO ${scenario} DID YOU INCLUDE THE SPECIFIC folder ? ; read dummy
231	sed s+"mars_lmd"+"mars_lmd_new_${scenario}"+g SRC/SCRIPTS/copy_model > copy_model_tmp
232	if [[ "${config}" == "les" ]]
233	then
234	echo "NOT SUPPORTED, check options"
235	exit
236	fi
237	fi
238	if [[ "${config}" == "les" ]]
239	then
240	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g copy_model_tmp > yeah
241	mv yeah copy_model_tmp
242	fi
243	chmod 755 copy_model_tmp
244	./copy_model_tmp
245	\rm copy_model_tmp
246	mv zeWRFV2 ${conf_wrf}/WRFV2
247	cd ${conf_wrf}/WRFV2
248	if [[ "${scenario}" == "" ]]
249	then
250	ln -sf mars_lmd_new mars_lmd
251	if [[ "${phys}" == "newphys_" ]]
252	then
253	if [[ "${config}" != "les" ]]
254	then
255	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
256	else
257	cp -L ../../SRC/LES/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
258	fi
259	fi
260	cd phys
261	ln -sf module_lmd_driver.F.new module_lmd_driver.F
262	cd ..
263	else
264	ln -sf mars_lmd_new_${scenario} mars_lmd
265	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/Registry.EM mars_lmd_new_${scenario}/
266	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/*.inc mars_lmd_new_${scenario}/
267	cd Registry ; ln -sf ../mars_lmd_new_${scenario}/Registry.EM . ; cd ..
268	fi
269
270	# remove files adapted to parallel GCM and useless for mesoscale
271	cd mars_lmd
272	cd libf/phymars
273	\rm tabfi* soil_settings* phyetat0* phyredem* iostart* writediagfi* mkstat* writediagsoil* eofdump* wstats* inistats* mod_*
274	\rm iniphysiq* init_phys_lmdz* comgeomphy* planetwide_mod*
275	mv ../dyn3d/control_mod.F90 .
276	cd ../..
277	cd ..
278
279	else
280	if [[ "${config}" == "les" ]]
281	then
282	### NB: With physics: LES folder // Without physics : LESnophys_ folder
283	### ---- because differences in 'modif' folder ----
284	sed s+"PWD/SRC/"+"PWD/SRC/LES$phys/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
285	else
286	cp SRC/SCRIPTS/copy_model copy_model_tmp
287	fi
288	chmod 755 copy_model_tmp
289	./copy_model_tmp
290	\rm copy_model_tmp
291	mv zeWRFV2 ${conf_wrf}/WRFV2
292	cd ${conf_wrf}/WRFV2
293	cd Registry ; ./Registry.bash ; cd ..
294	fi
295	#### sparadrap consequent a l'utilisation de copy_model pour les liens
296	#### -- car alors il manque fftpack
297	if [[ "${config}" == "les" ]]
298	then
299	if [[ "${phys}" == "nophys_" ]]
300	then
301	## voir ci-dessus pour le folder
302	cp ../../SRC/LES$phys/correcfft ./
303	else
304	cp ../../SRC/LES/correcfft ./
305	fi
306	./correcfft
307	\rm correcfft
308	fi
309	else
310	cd ${conf_wrf}/WRFV2
311	if [ ${fresh_start} -eq 1 ]
312	then
313	echo '*** FRESH START, I clean everything'
314	### clean the whole place
315	clean -a > /dev/null 2> /dev/null
316	### get a possibly modified registry !
317	if [[ "${scenario}" == "" ]]
318	then
319	if [[ "${phys}" == "newphys_" ]]
320	then
321	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
322	else
323	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
324	fi
325	fi
326	if [[ "${config}" == "les" ]]
327	then
328	cp ../../SRC/LES/WRFV2/Registry/Registry.EM Registry/
329	fi
330	### ensure the model will be recompiled from scratch with correct registry
331	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
332	# answer='y' ## a voir... pas si sur
333	# else
334	# if [[ "${phys}" != "nophys_" ]]
335	# then
336	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
337	# case ${answer} in
338	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
339	# *) answer='no' ;;
340	# esac
341	# fi
342	fi
343	fi
344
345	# summary
346	echo '**********************'
347	echo '*** Your folder is ...'
348	echo '**********************'
349	echo ${conf_wrf}
350	echo '**********************'
351	echo '****************************************'
352	echo so ...
353	echo your computer is ${machine} bits
354	echo ${compilo} is your compiler
355	if [[ "${compilo}" = "mpi" ]]
356	then
357	echo MPICH is in ${WHERE_MPI}
358	fi
359	echo you have ${dom} domains
360	if [[ "${phys}" == "newphys_" ]]
361	then
362	echo number of processors can be changed without recompiling
363	echo x points can be changed without recompiling
364	echo y points can be changed without recompiling
365	echo z points can be changed without recompiling
366	echo number of tracers can be changed without recompiling
367	else
368	echo you will use ${numproc} processors
369	echo you have ${lon} x points
370	echo ' '${lat} y points
371	echo ' '${level} z points
372	echo ' '${tra} tracers
373	fi
374	echo '****************************************'
375	# save answer
376	\rm last 2> /dev/null
377	touch last
378	echo ${reply} >> last
379	if [[ "${phys}" != "newphys_" ]]
380	then
381	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
382	then
383	echo ${numproc} >> last
384	fi
385	echo ${lon} >> last
386	echo ${lat} >> last
387	echo ${level} >> last
388	fi
389	echo ${dom} >> last
390	if [[ "${phys}" != "newphys_" ]]
391	then
392	echo ${tra} >> last
393	fi
394
395	#------------
396	# log files
397	#------------
398	\rm log_compile 2> /dev/null
399	\rm log_error 2> /dev/null
400
401	#-----------------
402	# configure WRF
403	#-----------------
404	mv configure.wrf configure.wrf.bak 2> /dev/null
405	########################
406	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
407
408	#### in this case options are different because for LES, WRFV3 is used
409	if [[ "${config}" == "les" ]]
410	then
411	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
412	fi
413
414	case ${conf_wrf_forall} in
415
416	#######LES-specific (WRFV3-based) -- previously in 'makeles'
417	#######
418
419	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
420	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
421	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
422	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
423	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
424	then
425	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
426	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
427	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
428	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
429	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
430	else
431	#sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
432	#sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
433	#### OPENMPI
434	sed s+"mpif90 -f90=\$(SFC)"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
435	sed s+"mpicc -cc=\$(SCC)"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
436	fi
437	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
438	### pas forcement necessaire ici mais OK
439	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
440	\rm conf > /dev/null ;;
441
442	lesmpifort_64) ## MPI (dm) 64 bits IFORT
443	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
444	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
445	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
446	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
447	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
448	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
449	sed s+"O3"+"O3 -mcmodel=large -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
450	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
451	if [ ${debug} -ne 0 ] # not working for xlf!
452	then
453	echo 'DEBUG DEBUG DEBUG DEBUG'
454	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
455	mv -f yeah configure.wrf
456	fi
457	\rm conf > /dev/null ;;
458
459	#######
460	#######LES-specific (WRFV3-based) -- previously in 'makeles'
461
462	#######TEST TEST
463	# GFORTRAN, 64 bits, no nesting
464	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
465	echo 15 \| configure > log_compile 2> log_error
466	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
467	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
468	#######TEST TEST
469	# PGF90, 32 bits, no nesting
470	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
471	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
472	# PGF90, 32 bits, nesting
473	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
474	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
475	# PGF90, 64 bits, no nesting
476	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
477	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
478	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
479	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
480	# PGF90, 64 bits, nesting
481	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
482	echo 4 \| configure > log_compile 2> log_error
483	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
484	# G95, 32 bits, no nesting
485	g95_32_single) echo 13 \| configure > log_compile 2> log_error
486	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
487	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
488	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
489	echo 14 \| configure > log_compile 2> log_error
490	##### marche pas ....
491	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
492	#sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
493	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
494	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
495	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
496	# IFORT, 64 bits, no nesting
497	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
498	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
499	if [ ${debug} -ne 0 ] # not working for xlf!
500	then
501	echo 'DEBUG DEBUG DEBUG DEBUG'
502	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
503	mv -f yeah configure.wrf
504	fi
505	## !!! NETCDF must be defined
506	sed s+"lio_grib_share"+"lio_grib_share -L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
507	mv -f yeah configure.wrf ;;
508	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
509	echo 9 \| configure > log_compile 2> log_error
510	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
511	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
512	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
513	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
514	if [ ${debug} -ne 0 ] # not working for xlf!
515	then
516	echo 'DEBUG DEBUG DEBUG DEBUG'
517	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
518	mv -f yeah configure.wrf
519	fi
520	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
521	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
522	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
523	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
524	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
525	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
526	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
527	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
528	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
529	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
530	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
531	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
532	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
533	### necessary even if mpi-selector is used (no need in makegcm though)
534	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
535	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
536	## !!! NETCDF must be defined
537	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
538	mv -f yeah configure.wrf
539	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
540	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
541	mv -f yeah configure.wrf ;;
542	# MPICH, 64 bits, no nesting / nesting
543	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
544	echo 3 \| configure > log_compile 2> log_error
545	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
546	### the following line is necessary because readtesassim has a line "use netcdf" in it!
547	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
548	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
549	#sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT -w -O3"+g > yeah
550	#\| sed s+"fastsse"+"fast"+g > yeah
551	mv -f yeah configure.wrf ;;
552	# #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
553	# ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
554	# ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
555	#sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah
556	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
557	#sed s+"-fastsse"+""+g configure.wrf > yeah
558	#sed s+"-fastsse"+"-fast"+g configure.wrf > yeah
559	#sed s+"-fastsse"+"-Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8 -Mfprelaxed"+g configure.wrf > yeah
560	#mv -f yeah configure.wrf ;;
561	# MPICH, 64 bits, OK with periodic BC but no positive definite
562	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
563	echo 2 \| configure > log_compile 2> log_error
564	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
565	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
566	mv -f yeah configure.wrf ;;
567	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
568	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
569	echo 3 \| configure > log_compile 2> log_error
570	sed -f mars.sed configure.wrf > yeah
571	mv -f yeah configure.wrf ;;
572	# ANYTHING ELSE
573	*) echo NO PRESETS ...
574	if [ ${donotallow} -eq 0 ]
575	then
576	configure
577	else
578	# problem when an input file is used
579	echo 'please cd to '$PWD' and type ./configure'
580	exit
581	fi ;;
582	esac
583	########################
584
585
586	### here a case structure would be great
587
588	if [[ "${phys}" == "newphys_" ]]
589	then
590	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
591	then
592	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
593	else
594	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
595	fi
596	mv -f yeah configure.wrf
597	fi
598
599	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment
600	then
601	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
602	mv -f yeah configure.wrf
603	fi
604
605	################
606	if [[ "${phys}" == "nophys_" ]]
607	then
608	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
609	then
610	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
611	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
612	else
613	### not tested yet but should be working
614	echo CAUTION CAUTION CAUTION NOT FULLY TESTED
615	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
616	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
617	fi
618	fi
619	################
620
621	if [ ${debug} -ne 0 ] # not working for xlf!
622	then
623	echo 'DEBUG DEBUG DEBUG DEBUG'
624	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
625	#sed s+"# -g"+"-g -Ktrap=fp -Mbounds"+g configure.wrf > yeah
626	#sed s+"# -g"+"-g"+g configure.wrf > yeah
627	mv -f yeah configure.wrf
628	fi
629
630
631	##################################################
632	# compile physics
633	##################################################
634	if [ ${donotcompilephys} -eq 0 ]
635	then
636
637	cd mars_lmd/
638
639	if [[ "${phys}" == "newphys_" ]]
640	then
641	divx=1
642	divy=1
643	else
644	# required size
645	#----------------
646	case ${numproc} in
647	1) divx=1 ; divy=1 ;;
648	2) divx=1 ; divy=2 ;;
649	4) divx=2 ; divy=2 ;;
650	6) divx=2 ; divy=3 ;;
651	8) divx=2 ; divy=4 ;;
652	12) divx=3 ; divy=4 ;;
653	16) divx=4 ; divy=4 ;;
654	20) divx=4 ; divy=5 ;;
655	24) divx=4 ; divy=6 ;;
656	32) divx=4 ; divy=8 ;;
657	64) divx=8 ; divy=8 ;;
658	128) divx=8 ; divy=16 ;;
659	*) echo not yet supported ; exit ;;
660	esac
661	fi
662	physx=$(expr ${lon} - 1)
663	restex=$(expr ${physx} \% ${divx})
664	physy=$(expr ${lat} - 1)
665	restey=$(expr ${physy} \% ${divy})
666	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
667	then
668	echo nx-1 shall be divided by ${divx}
669	echo ny-1 shall be divided by ${divy}
670	exit
671	fi
672	physx=$(expr ${physx} \/ ${divx})
673	physy=$(expr ${physy} \/ ${divy})
674	physz=$(expr ${level} - 1)
675
676	# change this if you change num_soil_layers in WRF
677	# -- default is 10
678	if [[ "${phys}" == "newphys_" ]]
679	then
680	soilsize=18 ## nouvelle physique. ne sert a rien ici. voir comsoil.
681	else
682	soilsize=10
683	fi
684
685	# GCM environment variables
686	#--------------------------
687	export LMDGCM=$PWD
688	export LIBOGCM=$PWD/libo
689
690	# generate the appropriate dimphys
691	#---------------------------------
692	cd libf/phymars
693	\rm dimphys.h 2> /dev/null
694	if [[ "${phys}" == "newphys_" ]]
695	then
696	ln -sf ../../meso_dimphys.h_ref . ## ne sert plus !!
697	else
698	physize=$(expr ${physx} \* ${physy})
699	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
700	head -15 dimphys.h
701	fi
702	### TEST new new phys
703	if [[ "${phys}" == "newphys_" ]]
704	then
705	touch gr_fi_dyn.F.lien
706	ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
707	###############################
708	###############################
709	###############################
710	fi
711	###
712	###
713	cd ../..
714
715	# prepare for nesting
716	#---------------------
717	cd libf
718	duplicate${dom} 2> /dev/null
719	cd ..
720
721	# compile physics
722	#--------------------------
723	\rm libf/grid/dimensions.h 2> /dev/null
724	\rm -rf libo/* 2> /dev/null
725	echo 1. compiling LMD physics ...
726	echo compilation info in:
727	echo $PWD/libo/log_compile_phys
728
729	if [ ${debug} -ne 0 ]
730	then
731	echo 'DEBUG DEBUG DEBUG DEBUG'
732	nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
733	else
734	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
735	fi
736	echo ... done
737	# clean the duplicate routines
738	cd libf
739	duplicate1 2> /dev/null
740	cd ..
741
742	# merge LMD executables in one lib
743	#--------------------------------------
744	cd libo
745	mkdir temp
746	#cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp
747	cp -f LINUX/.a temp/
748	cd temp
749	ar x libbibio.a
750	ar x libphymars.a
751	ar x libaeronomars.a
752	\rm *.a
753	ar r liblmd.a *
754	cp -f liblmd.a ..
755	cd ..
756	\rm -r temp
757	nm liblmd.a > liblmd_content
758	# finish merge
759	cd ..
760
761	if [[ "${phys}" == "newphys_" ]]
762	then
763	# include modules for interfacing
764	mv *.mod ../inc/
765	fi
766
767	# save a copy
768	#--------------
769	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}
770	echo '****************************************'
771
772	# ok
773	#----
774	cd ..
775
776	# manage nest includes in module_lmd_driver.F
777	#----
778	cp call_meso_inifis$dom.inc call_meso_inifis.inc
779	cp call_meso_physiq$dom.inc call_meso_physiq.inc
780
781
782	fi
783	##################################################
784	# END compile physics
785	##################################################
786
787	#------------------
788	# compile WRF
789	#------------------
790	if [ ${justphys} -eq 0 ]
791	then
792
793	echo 2. compiling WRF dynamical core ...
794
795	if [[ "${phys}" == "nophys_" ]]
796	then
797	echo 'NO LMD PHYSICS included'
798	else
799	if [[ ! ( -f "call_meso_physiq.inc" ) ]]
800	then
801	echo 'did you compile the physics ? no call_meso_physiq.inc !'
802	exit
803	fi
804	fi
805
806	# be sure to compile with the most recent physics
807	touch phys/module_lmd_driver.F
808
809	# talk to user
810	echo '>>> compiling ... this may be long ... <<<'
811	echo check progress in:
812	echo $PWD/log_compile
813	echo check possible errors in:
814	echo $PWD/log_error
815
816	# compile ...
817	case ${config} in
818	'') ./compile em_real > log_compile 2> log_error
819	# save executables
820	cd main
821	if [[ -f real.exe ]]
822	then
823	echo 'Looks good ! real.exe is here...'
824	fi
825	if [[ -f wrf.exe ]]
826	then
827	echo 'Looks good ! wrf.exe is here...'
828	fi
829	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
830	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
831	cd .. ;;
832	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
833	echo '>>> YOUR CONFIG IS : '${config}
834	./compile em_quarter_ss > log_compile 2> log_error
835	# save executables
836	cd main
837	if [[ -f ideal.exe ]]
838	then
839	echo 'Looks good ! ideal.exe is here...'
840	fi
841	if [[ -f wrf.exe ]]
842	then
843	echo 'Looks good ! wrf.exe is here...'
844	fi
845	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
846	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
847	cd .. ;;
848	'les') echo '>>> YOUR CONFIG IS : '${config}
849	mkdir 'test/em_les' 2> /dev/null
850	./compile em_les > log_compile 2> log_error
851	# save executables
852	cd main
853	if [[ -f ideal.exe ]]
854	then
855	echo 'Looks good ! ideal.exe is here...'
856	fi
857	if [[ -f wrf.exe ]]
858	then
859	echo 'Looks good ! wrf.exe is here...'
860	fi
861	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
862	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
863	cd .. ;;
864	*) echo not supported... please use ; echo ideal les ; exit ;;
865	esac
866	echo '*****last lines from log_error*******'
867	tail -n 20 log_error
868	fi
869
870	# the end
871	echo '****************************************'
872	echo 'done.'
873	echo '****************************************'
874	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}
875	mv last ../../
876	svn info ../../ > ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.svn.info
877
878	# add here specific messages
879	if [[ "${dom}" != "1" ]]
880	then
881	nest=$(expr ${lon} + 4)
882	echo NB: in namelist.input, please set:
883	echo '
884	max_dom = '$dom'
885	s_we = 1,1,
886	e_we = '$lon','$nest',
887	s_sn = 1,1,
888	e_sn = '$lat','$nest',
889	s_vert = 1,1,
890	e_vert = '$level','$level','
891	fi
892

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