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makemeso @ 1228

Last change on this file since 1228 was 1214, checked in by aslmd, 11 years ago
MESOSCALE. cf. previous commit, same principle. now everything works.
Property svn:executable set to ``*
File size: 36.0 KB

Line
1	#! /bin/bash
2
3
4	##################################
5	# makemeso allows you to compile #
6	# WRF with modified LMD physics #
7	##################################
8
9	##############################
10	# Author: A. Spiga #
11	# New version : October 2008 #
12	# Last update : January 2009 #
13	# November 09 #
14	# January 11 #
15	##############################
16
17	###############################
18	#### Type makemeso -h for help
19	###############################
20
21
22
23	##############################################################################################
24	##############################################################################################
25	##############################################################################################
26	##############################################################################################
27
28	donotcompile=0
29	donotallow=0
30	config=''
31	donotcompilephys=0
32	justphys=0
33	debug=0
34	fresh_start=0
35	phys=""
36	scenario=""
37	from_scratch=0
38	while getopts "drc:njhgpfs:xe" options; do
39	case $options in
40	d ) donotcompile=1;; ## just to check the compile folder
41	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
42	c ) config="${OPTARG}";; ## idealized cases
43	n ) donotcompilephys=1;; ## do not recompile physics
44	j ) justphys=1;; ## just compile LMD physics
45	g ) debug=1;; ## debug mode
46	p ) phys="newphys_";; ## with new physics
47	f ) fresh_start=1;; ## a fresh start
48	e ) from_scratch=1;; ## a fresh start with a completely new folder
49	s ) scenario="${OPTARG}";; ## a specific scenario, you need a corresponding "mars_lmd_..."
50	x ) donotcompile=1;phys="nophys_";donotcompilephys=1;; ## a case with no LMD physics included
51	h ) echo "
52	# Use:
53	#
54	# makemeso ## basic use (real-case configuration)
55	#
56	# makemeso -d ## no compilation, just check the name of the compile folder
57	#
58	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
59	# makemeso -c les ## large-eddy simulations mode based on WRFV3
60	#
61	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
62	#
63	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
64	# makemeso -r < last ## basic use + skip questions + only known config
65	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
66	#
67	# makemeso -j ## just compile the LMD physics
68	#
69	# makemeso -g ## debug mode
70	#
71	# makemeso -h ## display options
72	#
73	# makemeso -p ## with new LMD physics
74	#
75	# makemeso -f ## fresh start [clean -a]
76	#
77	# makemeso -e ## a completely new recompile with erasing ALL compiling folder
78	#
79	# makemeso -s storm ## a specific scenario, you need a corresponding mars_lmd_... (only for newphys)
80	#
81	# makemeso -x ## a case with no LMD physics included
82	" ; exit ;;
83	esac
84	done
85
86	#--------------
87	# talk w/ user
88	#--------------
89	echo '****************************************'
90	echo ' LMD Mesoscale Model Compiler. Welcome.'
91	echo '****************************************'
92	if [[ "${phys}" == "newphys_" ]]
93	then
94	echo '*********with new physics***********'
95	echo '****************************************'
96	fi
97	# computer
98	uname -a \| grep x86_64 > /dev/null
99	if [[ "$?" == 0 ]]
100	then
101	machine='64'
102	else
103	machine='32'
104	fi
105	# compiler
106	echo "Supported compiler options are "
107	echo " <1> pgf90"
108	echo " <2> g95"
109	echo " <3> pgf90 + mpi"
110	echo " <4> ifort"
111	echo " <5> ifort + mpi"
112	echo " <7> xlf + mpi (IBM AIX)"
113	echo "Your choice ?" ; read reply
114	case ${reply} in
115	1) compilo='pgf' ; numproc=1 ;;
116	2) compilo='g95' ; numproc=1 ;;
117	3) compilo='mpi'
118	if [[ "${WHERE_MPI}" = "" ]]
119	then
120	echo Please initialize the variable WHERE_MPI in your environnement
121	exit
122	fi
123	echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
124	4) compilo='ifort' ; numproc=1 ;;
125	5) compilo='mpifort' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
126	7) compilo='mpixlf' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
127	### for tests
128	99) compilo='gnu' ; numproc=1 ;;
129	*) echo not supported by this script ; exit ;;
130	esac
131	# dimensions
132	if [ ${donotcompile} -eq 0 ]
133	then
134	echo Grid points in longitude ? ; read lon
135	echo Grid points in latitude ? ; read lat
136	# ngrid: now dynamically set in newphys 03/2014
137	if [[ "${phys}" == "newphys_" ]]
138	then
139	lon=999
140	lat=999
141	numproc=999
142	fi
143	echo Number of vertical levels ? ; read level
144	fi
145	echo Number of domains ? ; read dom
146
147	###PB lecture dom si < last
148
149	case ${dom} in
150	1) single='_single' ;;
151	*) single='_nest' ;;
152	esac
153	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
154	then
155	single=''
156	fi
157
158	testflag=''
159	####
160	#testflag='_test'
161	####
162
163	conf_wrf="${config}${scenario}${phys}${compilo}_${machine}${single}${testflag}"
164	\rm what_folder 2> /dev/null
165	echo ${conf_wrf} > what_folder
166	if [ ${donotcompile} -eq 1 ]
167	then
168	#\rm what_folder 2> /dev/null
169	#echo '**********************'
170	#echo '*** Your folder is ...'
171	#echo '**********************'
172	#echo ${conf_wrf} \| tee what_folder
173	#cat what_folder
174	#echo ${conf_wrf} > what_folder
175	#echo ${reply} > what_compilo
176	#echo ${numproc} > what_numproc
177	if [[ "${phys}" != "nophys_" ]]
178	then
179	exit
180	fi
181	else
182	echo Number of tracers ? ; read tra
183	# tracers: now dynamically set in newphys 09/2013
184	if [[ "${phys}" == "newphys_" ]]
185	then
186	tra=999
187	else
188	if [ ${tra} -eq 0 ]
189	then
190	tra=1
191	fi
192	fi
193	# scatterers: a specific stuff for newphys
194	if [[ "${phys}" == "newphys_" ]]
195	then
196	echo "How many types of scatterer are you using ? 1 [dust] or 2 [dust + water ice]" ; read scat
197	else
198	scat=1 ## dummy stuff
199	fi
200	fi
201	# 'from scratch' case
202	if [ ${from_scratch} -eq 1 ]
203	then
204	echo "***** I ERASE THE FOLDER "${conf_wrf}
205	\rm -rf ${conf_wrf}
206	fi
207	# folder
208	mkdir ${conf_wrf} 2> /dev/null
209	if [[ "$?" == 0 ]]
210	then
211	echo new folder ... link sources
212	if [[ "${phys}" == "newphys_" ]]
213	then
214	\rm copy_model_tmp > /dev/null 2> /dev/null
215	if [[ "${scenario}" == "" ]]
216	then
217	sed s+"mars_lmd"+"mars_lmd_new"+g SRC/SCRIPTS/copy_model > copy_model_tmp
218	else
219	echo SCENARIO ${scenario} DID YOU INCLUDE THE SPECIFIC folder ? ; read dummy
220	sed s+"mars_lmd"+"mars_lmd_new_${scenario}"+g SRC/SCRIPTS/copy_model > copy_model_tmp
221	if [[ "${config}" == "les" ]]
222	then
223	echo "NOT SUPPORTED, check options"
224	exit
225	fi
226	fi
227	if [[ "${config}" == "les" ]]
228	then
229	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g copy_model_tmp > yeah
230	mv yeah copy_model_tmp
231	fi
232	chmod 755 copy_model_tmp
233	./copy_model_tmp
234	\rm copy_model_tmp
235	mv zeWRFV2 ${conf_wrf}/WRFV2
236	cd ${conf_wrf}/WRFV2
237	if [[ "${scenario}" == "" ]]
238	then
239	ln -sf mars_lmd_new mars_lmd
240	if [[ "${phys}" == "newphys_" ]]
241	then
242	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
243	fi
244	else
245	ln -sf mars_lmd_new_${scenario} mars_lmd
246	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/Registry.EM mars_lmd_new_${scenario}/
247	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/*.inc mars_lmd_new_${scenario}/
248	cd Registry ; ln -sf ../mars_lmd_new_${scenario}/Registry.EM . ; cd ..
249	fi
250	#ln -sf meso_callkeys_newphys.h meso_callkeys.h
251	cd Registry ; Registry.bash ; cd ..
252
253	# remove files adapted to parallel GCM and useless for mesoscale
254	cd mars_lmd
255	cd libf/phymars
256	\rm tabfi* soil_settings* phyetat0* phyredem* iostart* writediagfi* mkstat* writediagsoil* eofdump* wstats* inistats* mod_*
257	\rm iniphysiq* init_phys_lmdz* comgeomphy* planetwide_mod*
258	mv ../dyn3d/control_mod.F90 .
259	cd ../..
260	cd ..
261
262	else
263	if [[ "${config}" == "les" ]]
264	then
265	### NB: With physics: LES folder // Without physics : LESnophys_ folder
266	### ---- because differences in 'modif' folder ----
267	sed s+"PWD/SRC/"+"PWD/SRC/LES$phys/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
268	else
269	cp SRC/SCRIPTS/copy_model copy_model_tmp
270	fi
271	chmod 755 copy_model_tmp
272	./copy_model_tmp
273	\rm copy_model_tmp
274	mv zeWRFV2 ${conf_wrf}/WRFV2
275	cd ${conf_wrf}/WRFV2
276	cd Registry ; ./Registry.bash ; cd ..
277	fi
278	#### sparadrap consequent a l'utilisation de copy_model pour les liens
279	#### -- car alors il manque fftpack
280	if [[ "${config}" == "les" ]]
281	then
282	if [[ "${phys}" == "nophys_" ]]
283	then
284	## voir ci-dessus pour le folder
285	cp ../../SRC/LES$phys/correcfft ./
286	else
287	cp ../../SRC/LES/correcfft ./
288	fi
289	./correcfft
290	\rm correcfft
291	fi
292	else
293	cd ${conf_wrf}/WRFV2
294	if [ ${fresh_start} -eq 1 ]
295	then
296	echo '*** FRESH START, I clean everything'
297	### clean the whole place
298	clean -a > /dev/null 2> /dev/null
299	### get a possibly modified registry !
300	if [[ "${scenario}" == "" ]]
301	then
302	if [[ "${phys}" == "newphys_" ]]
303	then
304	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
305	else
306	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
307	fi
308	fi
309	if [[ "${config}" == "les" ]]
310	then
311	cp ../../SRC/LES/WRFV2/Registry/Registry.EM Registry/
312	fi
313	### ensure the model will be recompiled from scratch with correct registry
314	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
315	# answer='y' ## a voir... pas si sur
316	# else
317	# if [[ "${phys}" != "nophys_" ]]
318	# then
319	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
320	# case ${answer} in
321	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
322	# *) answer='no' ;;
323	# esac
324	# fi
325	fi
326	fi
327
328	# summary
329	echo '**********************'
330	echo '*** Your folder is ...'
331	echo '**********************'
332	echo ${conf_wrf}
333	echo '**********************'
334	echo '****************************************'
335	echo so ...
336	echo your computer is ${machine} bits
337	echo ${compilo} is your compiler
338	if [[ "${compilo}" = "mpi" ]]
339	then
340	echo MPICH is in ${WHERE_MPI}
341	fi
342	echo you will use ${numproc} processors
343	echo you have ${lon} x points
344	echo ' '${lat} y points
345	echo ' '${level} z points
346	echo ' '${dom} domains
347	echo ' '${tra} tracers
348	if [[ "${phys}" == "newphys_" ]]
349	then
350	echo ' '${scat} scatterers
351	fi
352	echo '****************************************'
353	# save answer
354	\rm last 2> /dev/null
355	touch last
356	echo ${reply} >> last
357	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
358	then
359	echo ${numproc} >> last
360	fi
361	echo ${lon} >> last
362	echo ${lat} >> last
363	echo ${level} >> last
364	echo ${dom} >> last
365	echo ${tra} >> last
366	echo ${scat} >> last
367	#echo ${answer} >> last
368
369	#------------
370	# log files
371	#------------
372	\rm log_compile 2> /dev/null
373	\rm log_error 2> /dev/null
374
375	#-----------------
376	# configure WRF
377	#-----------------
378	mv configure.wrf configure.wrf.bak 2> /dev/null
379	########################
380	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
381
382	#### in this case options are different because for LES, WRFV3 is used
383	if [[ "${config}" == "les" ]]
384	then
385	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
386	fi
387
388	case ${conf_wrf_forall} in
389
390	#######LES-specific (WRFV3-based) -- previously in 'makeles'
391	#######
392
393	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
394	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
395	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
396	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
397	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
398	then
399	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
400	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
401	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
402	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
403	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
404	else
405	#sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
406	#sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
407	#### OPENMPI
408	sed s+"mpif90 -f90=\$(SFC)"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
409	sed s+"mpicc -cc=\$(SCC)"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
410	fi
411	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
412	### pas forcement necessaire ici mais OK
413	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
414	\rm conf > /dev/null ;;
415
416	lesmpifort_64) ## MPI (dm) 64 bits IFORT
417	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
418	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
419	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
420	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
421	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
422	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
423	sed s+"O3"+"O3 -mcmodel=large -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
424	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
425	if [ ${debug} -ne 0 ] # not working for xlf!
426	then
427	echo 'DEBUG DEBUG DEBUG DEBUG'
428	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
429	mv -f yeah configure.wrf
430	fi
431	\rm conf > /dev/null ;;
432
433	#######
434	#######LES-specific (WRFV3-based) -- previously in 'makeles'
435
436	#######TEST TEST
437	# GFORTRAN, 64 bits, no nesting
438	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
439	echo 15 \| configure > log_compile 2> log_error
440	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
441	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
442	#######TEST TEST
443	# PGF90, 32 bits, no nesting
444	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
445	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
446	# PGF90, 32 bits, nesting
447	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
448	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
449	# PGF90, 64 bits, no nesting
450	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
451	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
452	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
453	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
454	# PGF90, 64 bits, nesting
455	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
456	echo 4 \| configure > log_compile 2> log_error
457	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
458	# G95, 32 bits, no nesting
459	g95_32_single) echo 13 \| configure > log_compile 2> log_error
460	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
461	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
462	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
463	echo 14 \| configure > log_compile 2> log_error
464	##### marche pas ....
465	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
466	#sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
467	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
468	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
469	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
470	# IFORT, 64 bits, no nesting
471	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
472	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
473	if [ ${debug} -ne 0 ] # not working for xlf!
474	then
475	echo 'DEBUG DEBUG DEBUG DEBUG'
476	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
477	mv -f yeah configure.wrf
478	fi
479	## !!! NETCDF must be defined
480	sed s+"lio_grib_share"+"lio_grib_share -L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
481	mv -f yeah configure.wrf ;;
482	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
483	echo 9 \| configure > log_compile 2> log_error
484	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
485	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
486	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
487	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
488	if [ ${debug} -ne 0 ] # not working for xlf!
489	then
490	echo 'DEBUG DEBUG DEBUG DEBUG'
491	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
492	mv -f yeah configure.wrf
493	fi
494	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
495	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
496	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
497	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
498	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
499	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
500	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
501	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
502	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
503	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
504	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
505	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
506	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
507	### necessary even if mpi-selector is used (no need in makegcm though)
508	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
509	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
510	## !!! NETCDF must be defined
511	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
512	mv -f yeah configure.wrf
513	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
514	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
515	mv -f yeah configure.wrf ;;
516	# MPICH, 64 bits, no nesting / nesting
517	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
518	echo 3 \| configure > log_compile 2> log_error
519	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
520	### the following line is necessary because readtesassim has a line "use netcdf" in it!
521	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
522	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
523	#sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT -w -O3"+g > yeah
524	#\| sed s+"fastsse"+"fast"+g > yeah
525	mv -f yeah configure.wrf ;;
526	# #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
527	# ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
528	# ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
529	#sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah
530	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
531	#sed s+"-fastsse"+""+g configure.wrf > yeah
532	#sed s+"-fastsse"+"-fast"+g configure.wrf > yeah
533	#sed s+"-fastsse"+"-Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8 -Mfprelaxed"+g configure.wrf > yeah
534	#mv -f yeah configure.wrf ;;
535	# MPICH, 64 bits, OK with periodic BC but no positive definite
536	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
537	echo 2 \| configure > log_compile 2> log_error
538	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
539	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
540	mv -f yeah configure.wrf ;;
541	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
542	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
543	echo 3 \| configure > log_compile 2> log_error
544	sed -f mars.sed configure.wrf > yeah
545	mv -f yeah configure.wrf ;;
546	# ANYTHING ELSE
547	*) echo NO PRESETS ...
548	if [ ${donotallow} -eq 0 ]
549	then
550	configure
551	else
552	# problem when an input file is used
553	echo 'please cd to '$PWD' and type ./configure'
554	exit
555	fi ;;
556	esac
557	########################
558
559
560	### here a case structure would be great
561
562	if [[ "${phys}" == "newphys_" ]]
563	then
564	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
565	then
566	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
567	else
568	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
569	fi
570	mv -f yeah configure.wrf
571	fi
572
573	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment
574	then
575	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
576	mv -f yeah configure.wrf
577	fi
578
579	################
580	if [[ "${phys}" == "nophys_" ]]
581	then
582	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
583	then
584	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
585	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
586	else
587	### not tested yet but should be working
588	echo CAUTION CAUTION CAUTION NOT FULLY TESTED
589	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
590	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
591	fi
592	fi
593	################
594
595	if [ ${debug} -ne 0 ] # not working for xlf!
596	then
597	echo 'DEBUG DEBUG DEBUG DEBUG'
598	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
599	#sed s+"# -g"+"-g -Ktrap=fp -Mbounds"+g configure.wrf > yeah
600	#sed s+"# -g"+"-g"+g configure.wrf > yeah
601	mv -f yeah configure.wrf
602	fi
603
604
605	##################################################
606	# compile physics
607	##################################################
608	if [ ${donotcompilephys} -eq 0 ]
609	then
610
611	cd mars_lmd/
612
613	if [[ "${phys}" == "newphys_" ]]
614	then
615	divx=1
616	divy=1
617	else
618	# required size
619	#----------------
620	case ${numproc} in
621	1) divx=1 ; divy=1 ;;
622	2) divx=1 ; divy=2 ;;
623	4) divx=2 ; divy=2 ;;
624	6) divx=2 ; divy=3 ;;
625	8) divx=2 ; divy=4 ;;
626	12) divx=3 ; divy=4 ;;
627	16) divx=4 ; divy=4 ;;
628	20) divx=4 ; divy=5 ;;
629	24) divx=4 ; divy=6 ;;
630	32) divx=4 ; divy=8 ;;
631	64) divx=8 ; divy=8 ;;
632	128) divx=8 ; divy=16 ;;
633	*) echo not yet supported ; exit ;;
634	esac
635	fi
636	physx=$(expr ${lon} - 1)
637	restex=$(expr ${physx} \% ${divx})
638	physy=$(expr ${lat} - 1)
639	restey=$(expr ${physy} \% ${divy})
640	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
641	then
642	echo nx-1 shall be divided by ${divx}
643	echo ny-1 shall be divided by ${divy}
644	exit
645	fi
646	physx=$(expr ${physx} \/ ${divx})
647	physy=$(expr ${physy} \/ ${divy})
648	physz=$(expr ${level} - 1)
649
650	# change this if you change num_soil_layers in WRF
651	# -- default is 10
652	if [[ "${phys}" == "newphys_" ]]
653	then
654	soilsize=18 ## nouvelle physique. ne sert a rien ici. voir comsoil.
655	else
656	soilsize=10
657	fi
658
659	# GCM environment variables
660	#--------------------------
661	export LMDGCM=$PWD
662	export LIBOGCM=$PWD/libo
663
664	# generate the appropriate dimphys
665	#---------------------------------
666	cd libf/phymars
667	\rm dimphys.h 2> /dev/null
668	if [[ "${phys}" == "newphys_" ]]
669	then
670	ln -sf meso_inc/meso_dimphys.h_ref .
671	fi
672	physize=$(expr ${physx} \* ${physy})
673	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
674	head -15 dimphys.h
675	### TEST new new phys
676	if [[ "${phys}" == "newphys_" ]]
677	then
678	touch gr_fi_dyn.F.lien
679	ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
680	###############################
681	\rm scatterers.h
682	cat << EOF > scatterers.h
683	!-----------------------------------------------------------------------
684	! INCLUDE 'scatterers.h'
685	!
686	! Number of kind of tracer radiative properties
687	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
688	! (ex: naerkind=1 if you use one dust mode without ice ...)
689	! (ex: naerkind=2 if you use one dust mode and active ice ...)
690	!-----------------------------------------------------------------------
691
692	integer, parameter :: naerkind=${scat}
693
694	!-----------------------------------------------------------------------
695	EOF
696	###############################
697	###############################
698	fi
699	###
700	###
701	cd ../..
702
703	# prepare for nesting
704	#---------------------
705	cd libf
706	duplicate${dom} 2> /dev/null
707	cd ..
708
709	# compile physics
710	#--------------------------
711	\rm libf/grid/dimensions.h 2> /dev/null
712	\rm -rf libo/* 2> /dev/null
713	echo 1. compiling LMD physics ...
714	echo compilation info in:
715	echo $PWD/libo/log_compile_phys
716
717	if [ ${debug} -ne 0 ]
718	then
719	echo 'DEBUG DEBUG DEBUG DEBUG'
720	nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
721	else
722	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
723	fi
724	echo ... done
725	# clean the duplicate routines
726	cd libf
727	duplicate1 2> /dev/null
728	cd ..
729
730	# merge LMD executables in one lib
731	#--------------------------------------
732	cd libo
733	mkdir temp
734	#cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp
735	cp -f LINUX/.a temp/
736	cd temp
737	ar x libbibio.a
738	ar x libphymars.a
739	ar x libaeronomars.a
740	\rm *.a
741	ar r liblmd.a *
742	cp -f liblmd.a ..
743	cd ..
744	\rm -r temp
745	nm liblmd.a > liblmd_content
746	# finish merge
747	cd ..
748
749	# save a copy
750	#--------------
751	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}_${scat}
752	echo '****************************************'
753
754	# ok
755	#----
756	cd ..
757
758	# manage nest includes in module_lmd_driver.F
759	#----
760	cp call_meso_inifis$dom.inc call_meso_inifis.inc
761	cp call_meso_physiq$dom.inc call_meso_physiq.inc
762
763
764	fi
765	##################################################
766	# END compile physics
767	##################################################
768
769	#------------------
770	# compile WRF
771	#------------------
772	if [ ${justphys} -eq 0 ]
773	then
774
775	echo 2. compiling WRF dynamical core ...
776
777	if [[ "${phys}" == "nophys_" ]]
778	then
779	echo 'NO LMD PHYSICS included'
780	else
781	if [[ ! ( -f "call_meso_physiq.inc" ) ]]
782	then
783	echo 'did you compile the physics ? no call_meso_physiq.inc !'
784	exit
785	fi
786	fi
787
788	# be sure to compile with the most recent physics
789	touch phys/module_lmd_driver.F
790
791	# talk to user
792	echo '>>> compiling ... this may be long ... <<<'
793	echo check progress in:
794	echo $PWD/log_compile
795	echo check possible errors in:
796	echo $PWD/log_error
797
798	# compile ...
799	case ${config} in
800	'') ./compile em_real > log_compile 2> log_error
801	# save executables
802	cd main
803	if [[ -f real.exe ]]
804	then
805	echo 'Looks good ! real.exe is here...'
806	fi
807	if [[ -f wrf.exe ]]
808	then
809	echo 'Looks good ! wrf.exe is here...'
810	fi
811	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
812	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
813	cd .. ;;
814	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
815	echo '>>> YOUR CONFIG IS : '${config}
816	./compile em_quarter_ss > log_compile 2> log_error
817	# save executables
818	cd main
819	if [[ -f ideal.exe ]]
820	then
821	echo 'Looks good ! ideal.exe is here...'
822	fi
823	if [[ -f wrf.exe ]]
824	then
825	echo 'Looks good ! wrf.exe is here...'
826	fi
827	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
828	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
829	cd .. ;;
830	'les') echo '>>> YOUR CONFIG IS : '${config}
831	mkdir 'test/em_les' 2> /dev/null
832	./compile em_les > log_compile 2> log_error
833	# save executables
834	cd main
835	if [[ -f ideal.exe ]]
836	then
837	echo 'Looks good ! ideal.exe is here...'
838	fi
839	if [[ -f wrf.exe ]]
840	then
841	echo 'Looks good ! wrf.exe is here...'
842	fi
843	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
844	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
845	cd .. ;;
846	*) echo not supported... please use ; echo ideal les ; exit ;;
847	esac
848	echo '*****last lines from log_error*******'
849	tail -n 20 log_error
850	fi
851
852	# the end
853	echo '****************************************'
854	echo 'done.'
855	echo '****************************************'
856	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}
857	mv last ../../
858	svn info ../../ > ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.svn.info
859
860	# add here specific messages
861	if [[ "${dom}" != "1" ]]
862	then
863	nest=$(expr ${lon} + 4)
864	echo NB: in namelist.input, please set:
865	echo '
866	max_dom = '$dom'
867	s_we = 1,1,
868	e_we = '$lon','$nest',
869	s_sn = 1,1,
870	e_sn = '$lat','$nest',
871	s_vert = 1,1,
872	e_vert = '$level','$level','
873	fi
874

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