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makemeso @ 2845

Last change on this file since 2845 was 2458, checked in by aslmd, 4 years ago
MESOSCALE Mars. same as previous commit (double compile physics) but for non-debug compile
Property svn:executable set to ``*
File size: 42.0 KB

Rev	Line
[11]	1	#! /bin/bash
	2
	3
	4	##################################
	5	# makemeso allows you to compile #
	6	# WRF with modified LMD physics #
	7	##################################
	8
	9	##############################
	10	# Author: A. Spiga #
	11	# New version : October 2008 #
	12	# Last update : January 2009 #
	13	# November 09 #
[29]	14	# January 11 #
[11]	15	##############################
	16
[68]	17	###############################
	18	#### Type makemeso -h for help
	19	###############################
[11]	20
[2058]	21	###path to compiled version of ioipsl on your system for generic physics
	22	pathioipsl='/home/leconte/script/ioipsl/modipsl/lib'
[11]	23
	24	##############################################################################################
	25	##############################################################################################
	26	##############################################################################################
	27	##############################################################################################
	28
	29	donotcompile=0
	30	donotallow=0
[1588]	31	config='real'
[11]	32	donotcompilephys=0
	33	justphys=0
	34	debug=0
[54]	35	fresh_start=0
[1588]	36	phys="mars_lmd"
[118]	37	scenario=""
[1038]	38	from_scratch=0
[1440]	39
[1588]	40	while getopts "drc:njhgp:fs:xe" options; do
[11]	41	case $options in
[2268]	42	d ) donotcompile=1;donotcompilephys=1;justphys=1;; ## just to check the compile folder
[118]	43	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
	44	c ) config="${OPTARG}";; ## idealized cases
	45	n ) donotcompilephys=1;; ## do not recompile physics
	46	j ) justphys=1;; ## just compile LMD physics
	47	g ) debug=1;; ## debug mode
[1588]	48	p ) phys="${OPTARG}";; ## choose physics
[118]	49	f ) fresh_start=1;; ## a fresh start
[1038]	50	e ) from_scratch=1;; ## a fresh start with a completely new folder
[1411]	51	s ) scenario="${OPTARG}";; ## a specific scenario (with precompiling flags)
[1590]	52	x ) donotcompile=1;phys="void_lmd_new";donotcompilephys=1;; ## a case with no LMD physics included
[11]	53	h ) echo "
	54	# Use:
	55	#
[142]	56	# makemeso ## basic use (real-case configuration)
[11]	57	#
	58	# makemeso -d ## no compilation, just check the name of the compile folder
	59	#
[68]	60	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
[142]	61	# makemeso -c les ## large-eddy simulations mode based on WRFV3
[11]	62	#
[70]	63	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
[68]	64	#
[11]	65	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
	66	# makemeso -r < last ## basic use + skip questions + only known config
	67	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
	68	#
	69	# makemeso -j ## just compile the LMD physics
	70	#
	71	# makemeso -g ## debug mode
	72	#
	73	# makemeso -h ## display options
[29]	74	#
[1588]	75	# makemeso -p mars_lmd_new ## choose physics
[1597]	76	# venus_lmd_new
[2014]	77	# generic_lmd_new
[2295]	78	# titan_lmd_new
[54]	79	#
	80	# makemeso -f ## fresh start [clean -a]
[118]	81	#
[1578]	82	# makemeso -e ## a completely new recompile with erasing the WHOLE compiling folder
[1038]	83	#
[1411]	84	# makemeso -s DUSTSTORM ## a specific scenario (with precompiling flags)
[156]	85	#
	86	# makemeso -x ## a case with no LMD physics included
[11]	87	" ; exit ;;
	88	esac
	89	done
	90
	91	#--------------
	92	# talk w/ user
	93	#--------------
	94	echo '****************************************'
	95	echo ' LMD Mesoscale Model Compiler. Welcome.'
	96	echo '****************************************'
[1588]	97	if [[ "${phys}" == "new" ]]
[29]	98	then
[1588]	99	echo '*********** PHYSICS: ' ${phys}
[29]	100	echo '****************************************'
	101	fi
[11]	102	# computer
	103	uname -a \| grep x86_64 > /dev/null
	104	if [[ "$?" == 0 ]]
	105	then
	106	machine='64'
	107	else
	108	machine='32'
	109	fi
	110	# compiler
	111	echo "Supported compiler options are "
	112	echo " <1> pgf90"
	113	echo " <2> g95"
	114	echo " <3> pgf90 + mpi"
	115	echo " <4> ifort"
	116	echo " <5> ifort + mpi"
	117	echo " <7> xlf + mpi (IBM AIX)"
[1853]	118	echo " <8> gfortran"
[2115]	119	echo " <9> gfortran + openmpi"
[11]	120	echo "Your choice ?" ; read reply
	121	case ${reply} in
	122	1) compilo='pgf' ; numproc=1 ;;
	123	2) compilo='g95' ; numproc=1 ;;
	124	3) compilo='mpi'
[1236]	125	if [[ "${WHERE_MPI}" = "" ]]
[11]	126	then
	127	echo Please initialize the variable WHERE_MPI in your environnement
	128	exit
[1236]	129	fi ;;
[11]	130	4) compilo='ifort' ; numproc=1 ;;
[1236]	131	5) compilo='mpifort' ;;
	132	7) compilo='mpixlf' ;;
[1853]	133	8) compilo='gnu' ; numproc=1 ;;
[2115]	134	9) compilo='openmpi';;
[11]	135	*) echo not supported by this script ; exit ;;
	136	esac
[1236]	137	# number of processors
[1597]	138	if [[ "${phys}" == "new" ]]
[1236]	139	then
	140	numproc=999
	141	else
	142	case ${reply} in
	143	3) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
	144	5) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
	145	7) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
	146	esac
	147	fi
	148
[11]	149	# dimensions
	150	if [ ${donotcompile} -eq 0 ]
	151	then
[1212]	152	# ngrid: now dynamically set in newphys 03/2014
[1597]	153	if [[ "${phys}" == "new" ]]
[1212]	154	then
	155	lon=999
	156	lat=999
[1272]	157	level=999
[1236]	158	else
	159	echo Grid points in longitude ? ; read lon
	160	echo Grid points in latitude ? ; read lat
[1272]	161	echo Number of vertical levels ? ; read level
[1212]	162	fi
[11]	163	fi
	164	echo Number of domains ? ; read dom
	165
	166	###PB lecture dom si < last
	167
	168	case ${dom} in
	169	1) single='_single' ;;
	170	*) single='_nest' ;;
	171	esac
	172	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
	173	then
	174	single=''
	175	fi
	176
	177	testflag=''
	178	####
	179	#testflag='_test'
	180	####
	181
[1588]	182	conf_wrf="${phys}_${config}${scenario}_${compilo}_${machine}${single}${testflag}"
[1234]	183
	184	if [ ${debug} -eq 1 ]
	185	then
	186	conf_wrf="debug_${conf_wrf}"
	187	fi
	188
[11]	189	\rm what_folder 2> /dev/null
	190	echo ${conf_wrf} > what_folder
[1590]	191	if [ ${donotcompile} -eq 0 ]
[11]	192	then
[1590]	193	##\rm what_folder 2> /dev/null
	194	##echo '**********************'
	195	##echo '*** Your folder is ...'
	196	##echo '**********************'
	197	##echo ${conf_wrf} \| tee what_folder
	198	##cat what_folder
	199	##echo ${conf_wrf} > what_folder
	200	##echo ${reply} > what_compilo
	201	##echo ${numproc} > what_numproc
	202	#if [[ "${phys}" != "nophys_" ]]
	203	#then
	204	# exit
	205	#fi
	206	#else
[1212]	207	# tracers: now dynamically set in newphys 09/2013
[1597]	208	if [[ "${phys}" == "new" ]]
[1038]	209	then
	210	tra=999
	211	else
[1236]	212	echo Number of tracers ? ; read tra
[1038]	213	if [ ${tra} -eq 0 ]
	214	then
	215	tra=1
	216	fi
[157]	217	fi
[11]	218	fi
[1038]	219	# 'from scratch' case
	220	if [ ${from_scratch} -eq 1 ]
	221	then
	222	echo "***** I ERASE THE FOLDER "${conf_wrf}
	223	\rm -rf ${conf_wrf}
	224	fi
[11]	225	# folder
[1588]	226
[11]	227	mkdir ${conf_wrf} 2> /dev/null
	228	if [[ "$?" == 0 ]]
	229	then
	230	echo new folder ... link sources
[1588]	231	###############################################
[1597]	232	echo ${phys}
[1588]	233	./SRC/SCRIPTS/copy_model -p ${phys} -c ${config}
[215]	234	mv zeWRFV2 ${conf_wrf}/WRFV2
[1588]	235	###############################################
	236	if [[ "${phys}" == "new" ]]
[1411]	237	then
[1588]	238	cd ${conf_wrf}/WRFV2
[1411]	239	if [[ "${config}" != "les" ]]
[118]	240	then
[1411]	241	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
[118]	242	else
[1411]	243	cp -L ../../SRC/LES/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
	244	fi
[1588]	245	cd phys
	246	ln -sf module_lmd_driver.F.new module_lmd_driver.F
	247	cd ..
[1212]	248
[1746]	249	else
	250	cd ${conf_wrf}/WRFV2
	251	cd Registry ; ./Registry.bash ; cd ..
[54]	252	fi
[142]	253	#### sparadrap consequent a l'utilisation de copy_model pour les liens
	254	#### -- car alors il manque fftpack
	255	if [[ "${config}" == "les" ]]
[158]	256	then
[1389]	257	cp ../../SRC/LES/correcfft ./
[142]	258	./correcfft
	259	\rm correcfft
	260	fi
[1588]	261	else
[11]	262	cd ${conf_wrf}/WRFV2
[54]	263	if [ ${fresh_start} -eq 1 ]
	264	then
	265	echo '*** FRESH START, I clean everything'
[318]	266	### clean the whole place
[54]	267	clean -a > /dev/null 2> /dev/null
[318]	268	### get a possibly modified registry !
[1588]	269	if [[ "${phys}" == "new" ]]
[333]	270	then
[1411]	271	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
	272	else
	273	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
[333]	274	fi
[341]	275	if [[ "${config}" == "les" ]]
	276	then
	277	cp ../../SRC/LES/WRFV2/Registry/Registry.EM Registry/
	278	fi
[318]	279	### ensure the model will be recompiled from scratch with correct registry
[54]	280	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
[262]	281	# answer='y' ## a voir... pas si sur
	282	# else
	283	# if [[ "${phys}" != "nophys_" ]]
	284	# then
	285	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
	286	# case ${answer} in
	287	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
	288	# *) answer='no' ;;
	289	# esac
	290	# fi
[54]	291	fi
[11]	292	fi
[153]	293
[11]	294	# summary
	295	echo '**********************'
	296	echo '*** Your folder is ...'
	297	echo '**********************'
	298	echo ${conf_wrf}
	299	echo '**********************'
	300	echo '****************************************'
	301	echo so ...
	302	echo your computer is ${machine} bits
	303	echo ${compilo} is your compiler
	304	if [[ "${compilo}" = "mpi" ]]
	305	then
	306	echo MPICH is in ${WHERE_MPI}
	307	fi
[1272]	308	echo you have ${dom} domains
[1588]	309	if [[ "${phys}" == "new" ]]
[153]	310	then
[1236]	311	echo number of processors can be changed without recompiling
	312	echo x points can be changed without recompiling
	313	echo y points can be changed without recompiling
[1272]	314	echo z points can be changed without recompiling
[1236]	315	echo number of tracers can be changed without recompiling
	316	else
	317	echo you will use ${numproc} processors
	318	echo you have ${lon} x points
	319	echo ' '${lat} y points
[1272]	320	echo ' '${level} z points
[1236]	321	echo ' '${tra} tracers
[153]	322	fi
[11]	323	echo '****************************************'
	324	# save answer
	325	\rm last 2> /dev/null
	326	touch last
	327	echo ${reply} >> last
[1588]	328	if [[ "${phys}" != "new" ]]
[1236]	329	then
	330	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
	331	then
[11]	332	echo ${numproc} >> last
[1236]	333	fi
	334	echo ${lon} >> last
	335	echo ${lat} >> last
[1272]	336	echo ${level} >> last
[1236]	337	fi
[11]	338	echo ${dom} >> last
[1588]	339	if [[ "${phys}" != *"new" ]]
[1236]	340	then
	341	echo ${tra} >> last
	342	fi
[11]	343
	344	#------------
	345	# log files
	346	#------------
	347	\rm log_compile 2> /dev/null
	348	\rm log_error 2> /dev/null
	349
	350	#-----------------
	351	# configure WRF
	352	#-----------------
	353	mv configure.wrf configure.wrf.bak 2> /dev/null
	354	########################
[30]	355	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
[142]	356
	357	#### in this case options are different because for LES, WRFV3 is used
	358	if [[ "${config}" == "les" ]]
	359	then
	360	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
	361	fi
	362
[30]	363	case ${conf_wrf_forall} in
[142]	364
	365	#######LES-specific (WRFV3-based) -- previously in 'makeles'
	366	#######
	367
	368	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
	369	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
	370	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
[1588]	371	sed s+"-lnetcdf"+"-lnetcdf -L../$phys/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[142]	372	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
	373	then
	374	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
	375	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	376	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[158]	377	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	378	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[142]	379	else
[390]	380	#sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	381	#sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	382	#### OPENMPI
	383	sed s+"mpif90 -f90=\$(SFC)"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	384	sed s+"mpicc -cc=\$(SCC)"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[142]	385	fi
	386	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	387	### pas forcement necessaire ici mais OK
	388	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	389	\rm conf > /dev/null ;;
	390
	391	lesmpifort_64) ## MPI (dm) 64 bits IFORT
	392	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
	393	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
[1597]	394	if [[ "${phys}" != "void" ]]
	395	then
[1937]	396	sed s+"-lnetcdff"+"TOZTOZ"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	397	# ... in case there is netcdff save it in TOZTOZ so that it is not impacted in the following sed
[1597]	398	sed s+"-lnetcdf"+"-lnetcdf -L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[1937]	399	sed s+"TOZTOZ"+"-lnetcdff"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[1597]	400	else
	401	sed s+"-lnetcdf"+"-lnetcdf $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	402	fi
[142]	403	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	404	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	405	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
[1597]	406	sed s+"O3"+"O3 -mcmodel=large -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[1587]	407	#sed s+"-lnetcdf -lnetcdff"+"-lnetcdf -lnetcdff -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[674]	408	if [ ${debug} -ne 0 ] # not working for xlf!
	409	then
	410	echo 'DEBUG DEBUG DEBUG DEBUG'
[790]	411	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
[674]	412	mv -f yeah configure.wrf
	413	fi
[142]	414	\rm conf > /dev/null ;;
	415
[2115]	416	lesopenmpi_64_single) echo Special option...
	417	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 13 >> conf ; echo 0 >> conf
	418	configure < conf > log_compile 2> log_error
	419	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	420	sed s+"-lnetcdff"+'-lnetcdff -I$(WRF_SRC_ROOT_DIR)/inc'+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	421
[2094]	422	lesgnu_64_single) echo Special option...
	423	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 11 >> conf ; echo 0 >> conf
	424	configure < conf > log_compile 2> log_error
	425	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	426	sed s+"-lnetcdff"+'-lnetcdff -I$(WRF_SRC_ROOT_DIR)/inc'+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[142]	427	#######
	428	#######LES-specific (WRFV3-based) -- previously in 'makeles'
	429
[11]	430	# GFORTRAN, 64 bits, no nesting
	431	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
	432	echo 15 \| configure > log_compile 2> log_error
[1588]	433	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
[2094]	434	sed s+"-L../$phys/libo -llmd"+"-lnetcdf -lnetcdff -L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[11]	435	# PGF90, 32 bits, no nesting
	436	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
[1588]	437	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[11]	438	# PGF90, 32 bits, nesting
	439	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
[1588]	440	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[11]	441	# PGF90, 64 bits, no nesting
	442	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
[330]	443	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
[1588]	444	#sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	445	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[11]	446	# PGF90, 64 bits, nesting
	447	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	448	echo 4 \| configure > log_compile 2> log_error
[1588]	449	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[11]	450	# G95, 32 bits, no nesting
	451	g95_32_single) echo 13 \| configure > log_compile 2> log_error
[1588]	452	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[24]	453	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
	454	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
	455	echo 14 \| configure > log_compile 2> log_error
[330]	456	##### marche pas ....
	457	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
[1588]	458	#sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	459	#sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	460	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[24]	461	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
[11]	462	# IFORT, 64 bits, no nesting
	463	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
	464	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
[674]	465	if [ ${debug} -ne 0 ] # not working for xlf!
	466	then
	467	echo 'DEBUG DEBUG DEBUG DEBUG'
[790]	468	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
[674]	469	mv -f yeah configure.wrf
	470	fi
[11]	471	## !!! NETCDF must be defined
[1588]	472	sed s+"lio_grib_share"+"lio_grib_share -L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
[11]	473	mv -f yeah configure.wrf ;;
	474	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
[1752]	475	echo 9 \| ./configure > log_compile 2> log_error
[1588]	476	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
[11]	477	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	478	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	479	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
[1440]	480	sed s+"-O1"+"-O1 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	481	sed s+"-O2"+"-O2 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	482	sed s+"-O3"+"-O3 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[674]	483	if [ ${debug} -ne 0 ] # not working for xlf!
	484	then
	485	echo 'DEBUG DEBUG DEBUG DEBUG'
[1752]	486	sed s+"#-g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
[674]	487	mv -f yeah configure.wrf
	488	fi
[11]	489	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	490	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
	491	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
	492	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
	493	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
	494	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	495	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	496	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	497	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	498	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	499	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	500	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	501	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	502	### necessary even if mpi-selector is used (no need in makegcm though)
	503	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
	504	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	505	## !!! NETCDF must be defined
[1752]	506	if [[ "${phys}" != "void" ]]
	507	then
	508	sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
	509	else
	510	sed s+"-lesmf_time"+"-lesmf_time $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
	511	fi
[70]	512	mv -f yeah configure.wrf
	513	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
[71]	514	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
[11]	515	mv -f yeah configure.wrf ;;
	516	# MPICH, 64 bits, no nesting / nesting
	517	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	518	echo 3 \| configure > log_compile 2> log_error
[1588]	519	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
[227]	520	### the following line is necessary because readtesassim has a line "use netcdf" in it!
[1588]	521	sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[11]	522	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
[341]	523	#sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT -w -O3"+g > yeah
[11]	524	#\| sed s+"fastsse"+"fast"+g > yeah
[341]	525	mv -f yeah configure.wrf ;;
[335]	526	# #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
	527	# ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
	528	# ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
	529	#sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah
	530	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
[341]	531	#sed s+"-fastsse"+""+g configure.wrf > yeah
	532	#sed s+"-fastsse"+"-fast"+g configure.wrf > yeah
	533	#sed s+"-fastsse"+"-Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8 -Mfprelaxed"+g configure.wrf > yeah
	534	#mv -f yeah configure.wrf ;;
[11]	535	# MPICH, 64 bits, OK with periodic BC but no positive definite
	536	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	537	echo 2 \| configure > log_compile 2> log_error
[1588]	538	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
[11]	539	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
	540	mv -f yeah configure.wrf ;;
	541	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
	542	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	543	echo 3 \| configure > log_compile 2> log_error
[1588]	544	sed -f physics.sed configure.wrf > yeah
[11]	545	mv -f yeah configure.wrf ;;
	546	# ANYTHING ELSE
	547	*) echo NO PRESETS ...
	548	if [ ${donotallow} -eq 0 ]
	549	then
	550	configure
	551	else
	552	# problem when an input file is used
	553	echo 'please cd to '$PWD' and type ./configure'
	554	exit
	555	fi ;;
	556	esac
	557	########################
	558
[142]	559
[156]	560	### here a case structure would be great
	561
[1588]	562	if [[ "${phys}" == "new" ]]
[29]	563	then
[142]	564	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
	565	then
	566	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
	567	else
	568	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
	569	fi
[29]	570	mv -f yeah configure.wrf
	571	fi
[11]	572
[1411]	573	### SCENARIO SCENARIO SCENARIO
	574	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment?
[118]	575	then
[1411]	576	# precompiling flag in WRF part
[2115]	577	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
[118]	578	mv -f yeah configure.wrf
[1411]	579	# precompiling flag in LMD part
[1588]	580	cd $phys
[1411]	581	cp -Lrf makegcm_${compilo} yeah
	582	\rm makegcm_${compilo}
	583	sed s+"-DMESOSCALE"+"-D${scenario} -DMESOSCALE"+ yeah > makegcm_${compilo}
	584	chmod 755 makegcm_${compilo}
	585	\rm yeah
	586	cd ..
[118]	587	fi
	588
[156]	589	################
[1590]	590	#if [[ "${phys}" == "nophys_" ]]
	591	#then
	592	# if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
	593	# then
	594	# sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	595	# sed s+"-L../$phys/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
	596	# else
	597	# ### not tested yet but should be working
	598	# echo CAUTION CAUTION CAUTION NOT FULLY TESTED
	599	# sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	600	# sed s+"-L../$phys/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
	601	# fi
	602	#fi
[156]	603	################
	604
[1597]	605	if [[ "${phys}" == "venus" ]]
	606	then
	607	sed s+"LIB_BUNDLED = "+"LIB_BUNDLED = /usr/lib64/liblapack.so \ "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	608	fi
	609
[11]	610	if [ ${debug} -ne 0 ] # not working for xlf!
	611	then
	612	echo 'DEBUG DEBUG DEBUG DEBUG'
[790]	613	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
	614	#sed s+"# -g"+"-g -Ktrap=fp -Mbounds"+g configure.wrf > yeah
	615	#sed s+"# -g"+"-g"+g configure.wrf > yeah
[11]	616	mv -f yeah configure.wrf
	617	fi
	618
[1605]	619	if [[ "${phys}" == "prescribed" ]]
	620	then
	621	donotcompilephys=1
[1846]	622	fi
[1597]	623
[1846]	624	# some compiler and environment mess things up when using -C
	625	sed s+"-C"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
	626
[1588]	627	#exit
[11]	628	##################################################
	629	# compile physics
	630	##################################################
[1597]	631	if [ ${donotcompilephys} -eq 0 ] #\|\| [[ "${phys}" != "prescribed" ]]
[11]	632	then
	633
[1588]	634	cd $phys/
[11]	635
[1588]	636	if [[ "${phys}" == "new" ]]
[1212]	637	then
	638	divx=1
	639	divy=1
	640	else
[11]	641	# required size
	642	#----------------
	643	case ${numproc} in
[239]	644	1) divx=1 ; divy=1 ;;
	645	2) divx=1 ; divy=2 ;;
	646	4) divx=2 ; divy=2 ;;
	647	6) divx=2 ; divy=3 ;;
	648	8) divx=2 ; divy=4 ;;
	649	12) divx=3 ; divy=4 ;;
	650	16) divx=4 ; divy=4 ;;
	651	20) divx=4 ; divy=5 ;;
	652	24) divx=4 ; divy=6 ;;
	653	32) divx=4 ; divy=8 ;;
	654	64) divx=8 ; divy=8 ;;
	655	128) divx=8 ; divy=16 ;;
	656	*) echo not yet supported ; exit ;;
[11]	657	esac
[1212]	658	fi
[240]	659	physx=$(expr ${lon} - 1)
	660	restex=$(expr ${physx} \% ${divx})
	661	physy=$(expr ${lat} - 1)
	662	restey=$(expr ${physy} \% ${divy})
[239]	663	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
	664	then
	665	echo nx-1 shall be divided by ${divx}
	666	echo ny-1 shall be divided by ${divy}
	667	exit
	668	fi
[240]	669	physx=$(expr ${physx} \/ ${divx})
	670	physy=$(expr ${physy} \/ ${divy})
[239]	671	physz=$(expr ${level} - 1)
[11]	672
	673	# change this if you change num_soil_layers in WRF
	674	# -- default is 10
[1588]	675	if [[ "${phys}" == "new" ]]
[30]	676	then
[1212]	677	soilsize=18 ## nouvelle physique. ne sert a rien ici. voir comsoil.
[30]	678	else
	679	soilsize=10
	680	fi
[11]	681
	682	# GCM environment variables
	683	#--------------------------
	684	export LMDGCM=$PWD
	685	export LIBOGCM=$PWD/libo
	686
	687	# generate the appropriate dimphys
	688	#---------------------------------
[1597]	689	if [[ "${phys}" == "mars" ]]
	690	then
	691	cd libf/phymars
	692	elif [[ "${phys}" == "venus" ]]
	693	then
	694	cd libf/phyvenus
[2015]	695	elif [[ "${phys}" == "generic" ]]
[2014]	696	then
	697	cd libf/phystd
[2295]	698	elif [[ "${phys}" == "titan" ]]
	699	then
	700	cd libf/phytitan
[1597]	701	fi
[11]	702	\rm dimphys.h 2> /dev/null
[1746]	703	# if [[ "${phys}" == "newphys_" ]]
	704	# then
	705	# ln -sf ../../meso_dimphys.h_ref . ## ne sert plus !!
	706	# else
	707	if [[ "${phys}" == "mars_lmd" ]]
[235]	708	then
[1272]	709	physize=$(expr ${physx} \* ${physy})
	710	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
	711	head -15 dimphys.h
[235]	712	fi
[1746]	713	#### TEST new new phys
[1578]	714	#if [[ "${phys}" == "newphys_" ]]
	715	#then
	716	# touch gr_fi_dyn.F.lien
	717	# ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
[1746]	718	################################
	719	################################
	720	################################
[1578]	721	#fi
[1746]	722	####
	723	####
[11]	724	cd ../..
	725
	726	# prepare for nesting
	727	#---------------------
	728	cd libf
	729	duplicate${dom} 2> /dev/null
	730	cd ..
	731
	732	# compile physics
	733	#--------------------------
	734	\rm libf/grid/dimensions.h 2> /dev/null
	735	\rm -rf libo/* 2> /dev/null
	736	echo 1. compiling LMD physics ...
	737	echo compilation info in:
	738	echo $PWD/libo/log_compile_phys
[1746]	739
[1597]	740	if [ ${debug} -ne 0 ]
[11]	741	then
[1597]	742	if [[ "${phys}" == "mars" ]]
	743	then
	744	echo 'DEBUG DEBUG DEBUG DEBUG'
[1746]	745	nohup makegcm_${compilo} -debug -full -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
[2457]	746	nohup makegcm_${compilo} -debug -full -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys2 \| grep 'warnings' >> libo/log_compile_phys2
[1597]	747	elif [[ "${phys}" == "venus" ]]
[1752]	748	then
[1597]	749	echo 'DEBUG DEBUG DEBUG DEBUG'
[1752]	750	nohup ./makelmdz -debug -full -p venus -d 51 rcm1d -arch linux-ifort -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys # on /u/ and /planeto/
	751	nohup ./makelmdz --debug p venus -d 51 rcm1d -arch linux-ifort -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
[2014]	752	elif [[ "${phys}" == "generic" ]]
	753	then
	754	echo 'DEBUG DEBUG DEBUG DEBUG'
	755	nohup ./makelmdz -debug -t ${tra} -p std -b 36x32 -s 1 -d 25 rcm1d -arch X64_MESU -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys #Proxb
[2295]	756	elif [[ "${phys}" == "titan" ]]
	757	then
	758	echo 'DEBUG DEBUG DEBUG DEBUG'
	759	nohup makelmdz -debug -full -t ${tra} -p titan -b 23x23 -d 25 rcm1d -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
[1597]	760	fi
[11]	761	else
[2037]	762	if [[ "${phys}" == "mars" ]]
[1597]	763	then
	764	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
[2458]	765	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys2 \| grep 'warnings' >> libo/log_compile_phys2
[1597]	766	elif [[ "${phys}" == "venus" ]]
	767	then
[1752]	768	nohup ./makelmdz -full -p venus -d 51 rcm1d -arch linux-ifort_meso -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys # on /u/ and /planeto/
	769	nohup ./makelmdz -p venus -d 51 rcm1d -arch linux-ifort_meso -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
	770	#nohup ./makelmdz -full -p venus -d 51 rcm1d -arch CICLADifort -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys # on CICLAD
	771	#nohup ./makelmdz -p venus -d 51 rcm1d -arch CICLADifort -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
	772	#nohup ./makelmdz -full -p venus -d 51 rcm1d -arch X64_MESU -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys #on MESU
	773	#nohup ./makelmdz -p venus -d 51 rcm1d -arch X64_MESU -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
	774	#nohup makelmdz -full -p venus -d 51 rcm1d -arch X64_OCCIGEN -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys #on OCCIGEN
	775	#nohup makelmdz -p venus -d 51 rcm1d -arch X64_OCCIGEN -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
[2014]	776	elif [[ "${phys}" == "generic" ]]
	777	then
[2210]	778	echo $PWD/libo/log_compile_phys2
[2058]	779	nohup ./makelmdz -t 1 -p std -b 38x36 -full -s 1 -d 25 rcm1d -arch mascaret_gfortran_para -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys #Proxb
[2094]	780	nohup ./makelmdz -t 1 -p std -b 38x36 -s 1 -d 25 rcm1d -arch mascaret_gfortran_para -cpp MESOSCALE \| tee libo/log_compile_phys2 \| grep 'warnings' >> libo/log_compile_phys2 #Proxb
[2295]	781	elif [[ "${phys}" == "titan" ]]
	782	then
	783	nohup makelmdz -full -t ${tra} -p titan -b 23x23 -d 25 rcm1d -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
[2037]	784	fi
[11]	785	fi
	786	echo ... done
	787	# clean the duplicate routines
	788	cd libf
	789	duplicate1 2> /dev/null
	790	cd ..
	791
	792	# merge LMD executables in one lib
	793	#--------------------------------------
	794	cd libo
	795	mkdir temp
[1752]	796	if [[ "${phys}" == "mars" ]]
[1601]	797	then
[1752]	798	cp -f LINUX/.a temp
[2014]	799	else #VENUS and GENERIC
[2058]	800	# cp -f linux/.a temp/ # on /u/ and /planeto/
	801	cp -f /.a temp/ # on /u/ and /planeto/
[1752]	802	#cp -f /home/mlefevre/modipsl/lib/libioipsl.a temp/ #on CICLAD
	803	#cp -f X64/.a temp #on MESU and OCCIGEN
[2058]	804	cp -f $pathioipsl/libioipsl.a temp/
[1597]	805	fi
[11]	806	cd temp
[1597]	807	if [[ "${phys}" == "mars" ]]
	808	then
	809	ar x libbibio.a
	810	ar x libphymars.a
	811	ar x libaeronomars.a
[2014]	812	elif [[ "${phys}" == "venus" ]]
	813	then
[1597]	814	ar x libphyvenus.a
	815	ar x libmisc.a
	816	ar x libphy_common.a
[1601]	817	ar x libioipsl.a
[2014]	818	elif [[ "${phys}" == "generic" ]]
	819	then
	820	ar x libphystd.a
	821	ar x libmisc.a
	822	ar x libphy_common.a
	823	ar x libioipsl.a
[2295]	824	elif [[ "${phys}" == "titan" ]]
	825	then
	826	ar x libchimtitan.a
	827	ar x libphytitan.a
	828	ar x libmisc.a
	829	ar x libphy_common.a
	830	ar x libioipsl.a
[1597]	831	fi
[11]	832	\rm *.a
	833	ar r liblmd.a *
	834	cp -f liblmd.a ..
	835	cd ..
	836	\rm -r temp
	837	nm liblmd.a > liblmd_content
	838	# finish merge
	839	cd ..
[1588]	840	if [[ "${phys}" == "new" ]]
[1234]	841	then
[1597]	842	if [[ "${phys}" == "mars" ]]
	843	then
	844	# include modules for interfacing
	845	mv *.mod ../inc/
[2014]	846	else
[2058]	847	# mv ./libo/linux/.mod ../inc/ # on /u/ and /planeto/
	848	mv ./libo//.mod ../inc/ # on /u/ and /planeto/
[1752]	849	#mv ./libo/CICLAD/.mod ../inc/ # on CICLAD
	850	#mv ./libo/X64/.mod ../inc/ # on MESU and OCCIGEN
[2058]	851	cp -f $pathioipsl/*.mod ../inc/
[1597]	852	fi
[1234]	853	fi
	854
[1597]	855
[11]	856	# save a copy
	857	#--------------
[1247]	858	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}
[11]	859	echo '****************************************'
	860
	861	# ok
	862	#----
	863	cd ..
	864
	865	# manage nest includes in module_lmd_driver.F
	866	#----
	867	cp call_meso_inifis$dom.inc call_meso_inifis.inc
	868	cp call_meso_physiq$dom.inc call_meso_physiq.inc
	869
	870
	871	fi
	872	##################################################
	873	# END compile physics
	874	##################################################
	875
	876	#------------------
	877	# compile WRF
	878	#------------------
	879	if [ ${justphys} -eq 0 ]
	880	then
	881
	882	echo 2. compiling WRF dynamical core ...
	883
[1590]	884	#if [[ "${phys}" == "nophys_" ]]
	885	#then
	886	# echo 'NO LMD PHYSICS included'
	887	#else
	888	# if [[ ! ( -f "call_meso_physiq.inc" ) ]]
	889	# then
	890	# echo 'did you compile the physics ? no call_meso_physiq.inc !'
	891	# exit
	892	# fi
	893	#fi
[11]	894
	895	# be sure to compile with the most recent physics
	896	touch phys/module_lmd_driver.F
	897
	898	# talk to user
	899	echo '>>> compiling ... this may be long ... <<<'
	900	echo check progress in:
	901	echo $PWD/log_compile
	902	echo check possible errors in:
	903	echo $PWD/log_error
	904
	905	# compile ...
[1588]	906	echo '>>> YOUR CONFIG IS : '${config}
[11]	907	case ${config} in
[1588]	908	'real') ./compile em_real > log_compile 2> log_error
[11]	909	# save executables
	910	cd main
[68]	911	if [[ -f real.exe ]]
	912	then
	913	echo 'Looks good ! real.exe is here...'
	914	fi
[11]	915	if [[ -f wrf.exe ]]
	916	then
	917	echo 'Looks good ! wrf.exe is here...'
	918	fi
[1247]	919	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
	920	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
[11]	921	cd .. ;;
[68]	922	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
[1588]	923	#echo '>>> YOUR CONFIG IS : '${config}
[421]	924	./compile em_quarter_ss > log_compile 2> log_error
[11]	925	# save executables
	926	cd main
[68]	927	if [[ -f ideal.exe ]]
	928	then
	929	echo 'Looks good ! ideal.exe is here...'
	930	fi
[11]	931	if [[ -f wrf.exe ]]
	932	then
	933	echo 'Looks good ! wrf.exe is here...'
	934	fi
[1247]	935	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
	936	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
[11]	937	cd .. ;;
[1588]	938	'les') #echo '>>> YOUR CONFIG IS : '${config}
[142]	939	mkdir 'test/em_les' 2> /dev/null
[2094]	940	./compile em_les ###> log_compile 2> log_error
[142]	941	# save executables
	942	cd main
	943	if [[ -f ideal.exe ]]
	944	then
	945	echo 'Looks good ! ideal.exe is here...'
	946	fi
	947	if [[ -f wrf.exe ]]
	948	then
	949	echo 'Looks good ! wrf.exe is here...'
	950	fi
[1247]	951	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
	952	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
[142]	953	cd .. ;;
	954	*) echo not supported... please use ; echo ideal les ; exit ;;
[11]	955	esac
	956	echo '*****last lines from log_error*******'
	957	tail -n 20 log_error
	958	fi
	959
	960	# the end
	961	echo '****************************************'
	962	echo 'done.'
	963	echo '****************************************'
[1247]	964	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}
[11]	965	mv last ../../
[1247]	966	svn info ../../ > ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.svn.info
[11]	967
[1445]	968	# link latest compiled folder as LATEST
	969	cd ../../
[1448]	970	rm -rf LATEST
[1445]	971	ln -sf ${conf_wrf} LATEST
	972
[1855]	973	# link latest compiled exec
	974	cd LATEST
	975	case ${config} in
	976	'real') ln -sf real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe real.exe ;;
	977	'ideal') ln -sf ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe ideal.exe ;;
	978	'les') ln -sf ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe ideal.exe ;;
	979	esac
	980	ln -sf wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe wrf.exe
	981	cd ..
	982
[11]	983	# add here specific messages
	984	if [[ "${dom}" != "1" ]]
	985	then
	986	nest=$(expr ${lon} + 4)
	987	echo NB: in namelist.input, please set:
	988	echo '
	989	max_dom = '$dom'
	990	s_we = 1,1,
	991	e_we = '$lon','$nest',
	992	s_sn = 1,1,
	993	e_sn = '$lat','$nest',
	994	s_vert = 1,1,
	995	e_vert = '$level','$level','
	996	fi
	997
[1588]	998

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