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makemeso @ 279

Last change on this file since 279 was 262, checked in by aslmd, 13 years ago
MESOSCALE: major commit at an absurd hour. new version for user manual finished.
Property svn:executable set to ``*
File size: 31.1 KB

Rev	Line
[11]	1	#! /bin/bash
	2
	3
	4	##################################
	5	# makemeso allows you to compile #
	6	# WRF with modified LMD physics #
	7	##################################
	8
	9	##############################
	10	# Author: A. Spiga #
	11	# New version : October 2008 #
	12	# Last update : January 2009 #
	13	# November 09 #
[29]	14	# January 11 #
[11]	15	##############################
	16
[68]	17	###############################
	18	#### Type makemeso -h for help
	19	###############################
[11]	20
	21
	22
	23	##############################################################################################
	24	##############################################################################################
	25	##############################################################################################
	26	##############################################################################################
	27
	28	donotcompile=0
	29	donotallow=0
[142]	30	config=''
[11]	31	donotcompilephys=0
	32	justphys=0
	33	debug=0
[54]	34	fresh_start=0
[29]	35	phys=""
[118]	36	scenario=""
[156]	37	while getopts "drc:njhgpfs:x" options; do
[11]	38	case $options in
[118]	39	d ) donotcompile=1;; ## just to check the compile folder
	40	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
	41	c ) config="${OPTARG}";; ## idealized cases
	42	n ) donotcompilephys=1;; ## do not recompile physics
	43	j ) justphys=1;; ## just compile LMD physics
	44	g ) debug=1;; ## debug mode
	45	p ) phys="newphys_";; ## with new physics
	46	f ) fresh_start=1;; ## a fresh start
	47	s ) scenario="${OPTARG}";; ## a specific scenario, you need a corresponding "mars_lmd_..."
[157]	48	x ) donotcompile=1;phys="nophys_";donotcompilephys=1;; ## a case with no LMD physics included
[11]	49	h ) echo "
	50	# Use:
	51	#
[142]	52	# makemeso ## basic use (real-case configuration)
[11]	53	#
	54	# makemeso -d ## no compilation, just check the name of the compile folder
	55	#
[68]	56	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
[142]	57	# makemeso -c les ## large-eddy simulations mode based on WRFV3
[11]	58	#
[70]	59	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
[68]	60	#
[11]	61	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
	62	# makemeso -r < last ## basic use + skip questions + only known config
	63	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
	64	#
	65	# makemeso -j ## just compile the LMD physics
	66	#
	67	# makemeso -g ## debug mode
	68	#
	69	# makemeso -h ## display options
[29]	70	#
	71	# makemeso -p ## with new LMD physics
[54]	72	#
	73	# makemeso -f ## fresh start [clean -a]
[118]	74	#
	75	# makemeso -s storm ## a specific scenario, you need a corresponding mars_lmd_... (only for newphys)
[156]	76	#
	77	# makemeso -x ## a case with no LMD physics included
[11]	78	" ; exit ;;
	79	esac
	80	done
	81
	82	#--------------
	83	# talk w/ user
	84	#--------------
	85	echo '****************************************'
	86	echo ' LMD Mesoscale Model Compiler. Welcome.'
	87	echo '****************************************'
[29]	88	if [[ "${phys}" == "newphys_" ]]
	89	then
	90	echo '*********with new physics***********'
	91	echo '****************************************'
	92	fi
[11]	93	# computer
	94	uname -a \| grep x86_64 > /dev/null
	95	if [[ "$?" == 0 ]]
	96	then
	97	machine='64'
	98	else
	99	machine='32'
	100	fi
	101	# compiler
	102	echo "Supported compiler options are "
	103	echo " <1> pgf90"
	104	echo " <2> g95"
	105	echo " <3> pgf90 + mpi"
	106	echo " <4> ifort"
	107	echo " <5> ifort + mpi"
	108	echo " <7> xlf + mpi (IBM AIX)"
	109	echo "Your choice ?" ; read reply
	110	case ${reply} in
	111	1) compilo='pgf' ; numproc=1 ;;
	112	2) compilo='g95' ; numproc=1 ;;
	113	3) compilo='mpi'
	114	if [[ "${WHERE_MPI}" = "" ]]
	115	then
	116	echo Please initialize the variable WHERE_MPI in your environnement
	117	exit
	118	fi
[111]	119	echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
[11]	120	4) compilo='ifort' ; numproc=1 ;;
[111]	121	5) compilo='mpifort' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
	122	7) compilo='mpixlf' ; echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
[11]	123	### for tests
	124	99) compilo='gnu' ; numproc=1 ;;
	125	*) echo not supported by this script ; exit ;;
	126	esac
	127	# dimensions
	128	if [ ${donotcompile} -eq 0 ]
	129	then
	130	echo Grid points in longitude ? ; read lon
	131	echo Grid points in latitude ? ; read lat
	132	echo Number of vertical levels ? ; read level
	133	fi
	134	echo Number of domains ? ; read dom
	135
	136	###PB lecture dom si < last
	137
	138	case ${dom} in
	139	1) single='_single' ;;
	140	*) single='_nest' ;;
	141	esac
	142	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
	143	then
	144	single=''
	145	fi
	146
	147	testflag=''
	148	####
	149	#testflag='_test'
	150	####
	151
[142]	152	conf_wrf="${config}${scenario}${phys}${compilo}_${machine}${single}${testflag}"
[11]	153	\rm what_folder 2> /dev/null
	154	echo ${conf_wrf} > what_folder
	155	if [ ${donotcompile} -eq 1 ]
	156	then
	157	#\rm what_folder 2> /dev/null
	158	#echo '**********************'
	159	#echo '*** Your folder is ...'
	160	#echo '**********************'
	161	#echo ${conf_wrf} \| tee what_folder
	162	#cat what_folder
	163	#echo ${conf_wrf} > what_folder
	164	#echo ${reply} > what_compilo
	165	#echo ${numproc} > what_numproc
[157]	166	if [[ "${phys}" != "nophys_" ]]
	167	then
	168	exit
	169	fi
	170	else
	171	echo Number of tracers ? ; read tra
	172	if [ ${tra} -eq 0 ]
	173	then
	174	tra=1
	175	fi
[207]	176	if [[ "${phys}" == "newphys_" ]]
	177	then
	178	echo "How many types of scatterer are you using ? 1 [dust] or 2 [dust + water ice]" ; read scat
	179	else
	180	scat=1 ## dummy stuff
	181	fi
[11]	182	fi
	183	# folder
	184	mkdir ${conf_wrf} 2> /dev/null
	185	if [[ "$?" == 0 ]]
	186	then
	187	echo new folder ... link sources
[29]	188	if [[ "${phys}" == "newphys_" ]]
	189	then
[247]	190	\rm copy_model_tmp > /dev/null 2> /dev/null
[118]	191	if [[ "${scenario}" == "" ]]
	192	then
[216]	193	sed s+"mars_lmd"+"mars_lmd_new"+g SRC/SCRIPTS/copy_model > copy_model_tmp
[118]	194	else
[147]	195	echo SCENARIO ${scenario} DID YOU INCLUDE THE SPECIFIC folder ? ; read dummy
[216]	196	sed s+"mars_lmd"+"mars_lmd_new_${scenario}"+g SRC/SCRIPTS/copy_model > copy_model_tmp
[142]	197	if [[ "${config}" == "les" ]]
	198	then
	199	echo "NOT SUPPORTED, check options"
[147]	200	exit
[142]	201	fi
[118]	202	fi
[142]	203	if [[ "${config}" == "les" ]]
	204	then
	205	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g copy_model_tmp > yeah
	206	mv yeah copy_model_tmp
	207	fi
[54]	208	chmod 755 copy_model_tmp
	209	./copy_model_tmp
	210	\rm copy_model_tmp
[215]	211	mv zeWRFV2 ${conf_wrf}/WRFV2
[54]	212	cd ${conf_wrf}/WRFV2
[118]	213	if [[ "${scenario}" == "" ]]
	214	then
	215	ln -sf mars_lmd_new mars_lmd
	216	else
	217	ln -sf mars_lmd_new_${scenario} mars_lmd
	218	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/Registry.EM mars_lmd_new_${scenario}/
	219	cp ../../SRC/WRFV2/mars_lmd_new_${scenario}/*.inc mars_lmd_new_${scenario}/
	220	cd Registry ; ln -sf ../mars_lmd_new_${scenario}/Registry.EM . ; cd ..
	221	fi
[226]	222	#ln -sf meso_callkeys_newphys.h meso_callkeys.h
[54]	223	cd Registry ; Registry.bash ; cd ..
[29]	224	else
[142]	225	if [[ "${config}" == "les" ]]
	226	then
[156]	227	### NB: With physics: LES folder // Without physics : LESnophys_ folder
	228	### ---- because differences in 'modif' folder ----
[216]	229	sed s+"PWD/SRC/"+"PWD/SRC/LES$phys/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
[142]	230	else
[216]	231	cp SRC/SCRIPTS/copy_model copy_model_tmp
[142]	232	fi
	233	chmod 755 copy_model_tmp
	234	./copy_model_tmp
	235	\rm copy_model_tmp
[235]	236	mv zeWRFV2 ${conf_wrf}/WRFV2
[54]	237	cd ${conf_wrf}/WRFV2
	238	cd Registry ; Registry.bash ; cd ..
	239	fi
[142]	240	#### sparadrap consequent a l'utilisation de copy_model pour les liens
	241	#### -- car alors il manque fftpack
	242	if [[ "${config}" == "les" ]]
[158]	243	then
[167]	244	if [[ "${phys}" == "nophys_" ]]
	245	then
	246	## voir ci-dessus pour le folder
	247	cp ../../SRC/LES$phys/correcfft ./
	248	else
	249	cp ../../SRC/LES/correcfft ./
	250	fi
[142]	251	./correcfft
	252	\rm correcfft
	253	fi
[11]	254	else
	255	cd ${conf_wrf}/WRFV2
[54]	256	if [ ${fresh_start} -eq 1 ]
	257	then
	258	echo '*** FRESH START, I clean everything'
	259	clean -a > /dev/null 2> /dev/null
	260	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
[262]	261	# answer='y' ## a voir... pas si sur
	262	# else
	263	# if [[ "${phys}" != "nophys_" ]]
	264	# then
	265	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
	266	# case ${answer} in
	267	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
	268	# *) answer='no' ;;
	269	# esac
	270	# fi
[54]	271	fi
[11]	272	fi
[153]	273
[11]	274	# summary
	275	echo '**********************'
	276	echo '*** Your folder is ...'
	277	echo '**********************'
	278	echo ${conf_wrf}
	279	echo '**********************'
	280	echo '****************************************'
	281	echo so ...
	282	echo your computer is ${machine} bits
	283	echo ${compilo} is your compiler
	284	if [[ "${compilo}" = "mpi" ]]
	285	then
	286	echo MPICH is in ${WHERE_MPI}
	287	fi
	288	echo you will use ${numproc} processors
	289	echo you have ${lon} x points
	290	echo ' '${lat} y points
	291	echo ' '${level} z points
	292	echo ' '${dom} domains
	293	echo ' '${tra} tracers
[153]	294	if [[ "${phys}" == "newphys_" ]]
	295	then
	296	echo ' '${scat} scatterers
	297	fi
[11]	298	echo '****************************************'
	299	# save answer
	300	\rm last 2> /dev/null
	301	touch last
	302	echo ${reply} >> last
	303	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
	304	then
	305	echo ${numproc} >> last
	306	fi
	307	echo ${lon} >> last
	308	echo ${lat} >> last
	309	echo ${level} >> last
	310	echo ${dom} >> last
	311	echo ${tra} >> last
[226]	312	echo ${scat} >> last
[262]	313	#echo ${answer} >> last
[11]	314
	315	#------------
	316	# log files
	317	#------------
	318	\rm log_compile 2> /dev/null
	319	\rm log_error 2> /dev/null
	320
	321	#-----------------
	322	# configure WRF
	323	#-----------------
	324	mv configure.wrf configure.wrf.bak 2> /dev/null
	325	########################
[30]	326	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
[142]	327
	328	#### in this case options are different because for LES, WRFV3 is used
	329	if [[ "${config}" == "les" ]]
	330	then
	331	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
	332	fi
	333
[30]	334	case ${conf_wrf_forall} in
[142]	335
	336	#######LES-specific (WRFV3-based) -- previously in 'makeles'
	337	#######
	338
	339	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
	340	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
	341	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
	342	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	343	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
	344	then
	345	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
	346	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	347	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[158]	348	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	349	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[142]	350	else
	351	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	352	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	353	fi
	354	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	355	### pas forcement necessaire ici mais OK
	356	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	357	\rm conf > /dev/null ;;
	358
	359	lesmpifort_64) ## MPI (dm) 64 bits IFORT
	360	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
	361	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
	362	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	363	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	364	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	365	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	366	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	367	\rm conf > /dev/null ;;
	368
	369	#######
	370	#######LES-specific (WRFV3-based) -- previously in 'makeles'
	371
[11]	372	#######TEST TEST
	373	# GFORTRAN, 64 bits, no nesting
	374	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
	375	echo 15 \| configure > log_compile 2> log_error
	376	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	377	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	378	#######TEST TEST
	379	# PGF90, 32 bits, no nesting
	380	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
	381	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	382	# PGF90, 32 bits, nesting
	383	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
	384	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	385	# PGF90, 64 bits, no nesting
	386	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
	387	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	388	# PGF90, 64 bits, nesting
	389	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	390	echo 4 \| configure > log_compile 2> log_error
	391	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	392	# G95, 32 bits, no nesting
	393	g95_32_single) echo 13 \| configure > log_compile 2> log_error
	394	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[24]	395	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
	396	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
	397	echo 14 \| configure > log_compile 2> log_error
	398	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	399	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
[11]	400	# IFORT, 64 bits, no nesting
	401	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
	402	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	403	## !!! NETCDF must be defined
	404	sed s+"lio_grib_share"+"lio_grib_share -L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
	405	mv -f yeah configure.wrf ;;
	406	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
	407	echo 9 \| configure > log_compile 2> log_error
	408	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	409	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	410	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	411	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	412	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	413	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
	414	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
	415	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
	416	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
	417	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	418	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	419	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	420	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	421	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	422	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	423	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	424	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	425	### necessary even if mpi-selector is used (no need in makegcm though)
	426	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
	427	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	428	## !!! NETCDF must be defined
	429	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
[70]	430	mv -f yeah configure.wrf
	431	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
[71]	432	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
[11]	433	mv -f yeah configure.wrf ;;
	434	# MPICH, 64 bits, no nesting / nesting
	435	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	436	echo 3 \| configure > log_compile 2> log_error
	437	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
[227]	438	### the following line is necessary because readtesassim has a line "use netcdf" in it!
	439	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[11]	440	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
	441	#\| sed s+"fastsse"+"fast"+g > yeah
[28]	442	mv -f yeah configure.wrf ;;
	443	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
	444	##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
	445	##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
	446	#mv -f yeah configure.wrf ;;
[11]	447	# MPICH, 64 bits, OK with periodic BC but no positive definite
	448	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	449	echo 2 \| configure > log_compile 2> log_error
	450	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	451	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
	452	mv -f yeah configure.wrf ;;
	453	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
	454	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	455	echo 3 \| configure > log_compile 2> log_error
	456	sed -f mars.sed configure.wrf > yeah
	457	mv -f yeah configure.wrf ;;
	458	# ANYTHING ELSE
	459	*) echo NO PRESETS ...
	460	if [ ${donotallow} -eq 0 ]
	461	then
	462	configure
	463	else
	464	# problem when an input file is used
	465	echo 'please cd to '$PWD' and type ./configure'
	466	exit
	467	fi ;;
	468	esac
	469	########################
	470
[142]	471
[156]	472	### here a case structure would be great
	473
[29]	474	if [[ "${phys}" == "newphys_" ]]
	475	then
[142]	476	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
	477	then
	478	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
	479	else
	480	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
	481	fi
[29]	482	mv -f yeah configure.wrf
	483	fi
[11]	484
[142]	485	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment
[118]	486	then
	487	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
	488	mv -f yeah configure.wrf
	489	fi
	490
[156]	491	################
	492	if [[ "${phys}" == "nophys_" ]]
	493	then
	494	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
	495	then
	496	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	497	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
	498	else
	499	### not tested yet but should be working
	500	echo CAUTION CAUTION CAUTION NOT FULLY TESTED
	501	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	502	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
	503	fi
	504	fi
	505	################
	506
[11]	507	if [ ${debug} -ne 0 ] # not working for xlf!
	508	then
	509	echo 'DEBUG DEBUG DEBUG DEBUG'
	510	sed s+"#-g"+"-g"+g configure.wrf > yeah
	511	mv -f yeah configure.wrf
	512	fi
	513
	514
	515	##################################################
	516	# compile physics
	517	##################################################
	518	if [ ${donotcompilephys} -eq 0 ]
	519	then
	520
	521	cd mars_lmd/
	522
	523	# required size
	524	#----------------
	525	case ${numproc} in
[239]	526	1) divx=1 ; divy=1 ;;
	527	2) divx=1 ; divy=2 ;;
	528	4) divx=2 ; divy=2 ;;
	529	6) divx=2 ; divy=3 ;;
	530	8) divx=2 ; divy=4 ;;
	531	12) divx=3 ; divy=4 ;;
	532	16) divx=4 ; divy=4 ;;
	533	20) divx=4 ; divy=5 ;;
	534	24) divx=4 ; divy=6 ;;
	535	32) divx=4 ; divy=8 ;;
	536	64) divx=8 ; divy=8 ;;
	537	128) divx=8 ; divy=16 ;;
	538	*) echo not yet supported ; exit ;;
[11]	539	esac
[240]	540	physx=$(expr ${lon} - 1)
	541	restex=$(expr ${physx} \% ${divx})
	542	physy=$(expr ${lat} - 1)
	543	restey=$(expr ${physy} \% ${divy})
[239]	544	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
	545	then
	546	echo nx-1 shall be divided by ${divx}
	547	echo ny-1 shall be divided by ${divy}
	548	exit
	549	fi
[240]	550	physx=$(expr ${physx} \/ ${divx})
	551	physy=$(expr ${physy} \/ ${divy})
[239]	552	physz=$(expr ${level} - 1)
[11]	553
	554	# change this if you change num_soil_layers in WRF
	555	# -- default is 10
[30]	556	if [[ "${phys}" == "newphys_" ]]
	557	then
	558	soilsize=18 ## nouvelle physique
	559	else
	560	soilsize=10
	561	fi
[11]	562
	563	# GCM environment variables
	564	#--------------------------
	565	export LMDGCM=$PWD
	566	export LIBOGCM=$PWD/libo
	567
	568	# generate the appropriate dimphys
	569	#---------------------------------
	570	cd libf/phymars
	571	\rm dimphys.h 2> /dev/null
[235]	572	if [[ "${phys}" == "newphys_" ]]
	573	then
	574	ln -sf meso_inc/meso_dimphys.h_ref .
	575	fi
[11]	576	physize=$(expr ${physx} \* ${physy})
[235]	577	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
[11]	578	head -15 dimphys.h
[42]	579	### TEST new new phys
	580	if [[ "${phys}" == "newphys_" ]]
	581	then
[50]	582	touch gr_fi_dyn.F.lien
[227]	583	ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
[153]	584	###############################
	585	\rm scatterers.h
	586	cat << EOF > scatterers.h
	587	!-----------------------------------------------------------------------
	588	! INCLUDE 'scatterers.h'
	589	!
	590	! Number of kind of tracer radiative properties
	591	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	592	! (ex: naerkind=1 if you use one dust mode without ice ...)
	593	! (ex: naerkind=2 if you use one dust mode and active ice ...)
	594	!-----------------------------------------------------------------------
	595
	596	integer, parameter :: naerkind=${scat}
	597
	598	!-----------------------------------------------------------------------
	599	EOF
	600	###############################
	601	###############################
[42]	602	fi
	603	###
	604	###
[11]	605	cd ../..
	606
	607	# prepare for nesting
	608	#---------------------
	609	cd libf
	610	duplicate${dom} 2> /dev/null
	611	cd ..
	612
	613	# compile physics
	614	#--------------------------
	615	\rm libf/grid/dimensions.h 2> /dev/null
	616	\rm -rf libo/* 2> /dev/null
	617	echo 1. compiling LMD physics ...
	618	echo compilation info in:
	619	echo $PWD/libo/log_compile_phys
	620
	621	if [ ${debug} -ne 0 ]
	622	then
	623	echo 'DEBUG DEBUG DEBUG DEBUG'
[86]	624	nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
[11]	625	else
[86]	626	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
[11]	627	fi
	628	echo ... done
	629	# clean the duplicate routines
	630	cd libf
	631	duplicate1 2> /dev/null
	632	cd ..
	633
	634	# merge LMD executables in one lib
	635	#--------------------------------------
	636	cd libo
	637	mkdir temp
	638	#cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp
	639	cp -f LINUX/.a temp
	640	cd temp
	641	ar x libbibio.a
	642	ar x libphymars.a
	643	ar x libaeronomars.a
	644	\rm *.a
	645	ar r liblmd.a *
	646	cp -f liblmd.a ..
	647	cd ..
	648	\rm -r temp
	649	nm liblmd.a > liblmd_content
	650	# finish merge
	651	cd ..
	652
	653	# save a copy
	654	#--------------
[153]	655	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}_${scat}
[11]	656	echo '****************************************'
	657
	658	# ok
	659	#----
	660	cd ..
	661
	662	# manage nest includes in module_lmd_driver.F
	663	#----
	664	cp call_meso_inifis$dom.inc call_meso_inifis.inc
	665	cp call_meso_physiq$dom.inc call_meso_physiq.inc
	666
	667
	668	fi
	669	##################################################
	670	# END compile physics
	671	##################################################
	672
	673	#------------------
	674	# compile WRF
	675	#------------------
	676	if [ ${justphys} -eq 0 ]
	677	then
	678
	679	echo 2. compiling WRF dynamical core ...
	680
[156]	681	if [[ "${phys}" == "nophys_" ]]
[11]	682	then
[156]	683	echo 'NO LMD PHYSICS included'
	684	else
	685	if [[ ! ( -f "call_meso_physiq.inc" ) ]]
	686	then
	687	echo 'did you compile the physics ? no call_meso_physiq.inc !'
	688	exit
	689	fi
[11]	690	fi
	691
	692	# be sure to compile with the most recent physics
	693	touch phys/module_lmd_driver.F
	694
	695	# talk to user
	696	echo '>>> compiling ... this may be long ... <<<'
	697	echo check progress in:
	698	echo $PWD/log_compile
	699	echo check possible errors in:
	700	echo $PWD/log_error
	701
	702	# compile ...
	703	case ${config} in
[142]	704	'') compile em_real > log_compile 2> log_error
[11]	705	# save executables
	706	cd main
[68]	707	if [[ -f real.exe ]]
	708	then
	709	echo 'Looks good ! real.exe is here...'
	710	fi
[11]	711	if [[ -f wrf.exe ]]
	712	then
	713	echo 'Looks good ! wrf.exe is here...'
	714	fi
[153]	715	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
	716	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
[11]	717	cd .. ;;
[68]	718	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
[142]	719	echo '>>> YOUR CONFIG IS : '${config}
[11]	720	compile em_quarter_ss > log_compile 2> log_error
	721	# save executables
	722	cd main
[68]	723	if [[ -f ideal.exe ]]
	724	then
	725	echo 'Looks good ! ideal.exe is here...'
	726	fi
[11]	727	if [[ -f wrf.exe ]]
	728	then
	729	echo 'Looks good ! wrf.exe is here...'
	730	fi
[153]	731	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
	732	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
[11]	733	cd .. ;;
[142]	734	'les') echo '>>> YOUR CONFIG IS : '${config}
	735	mkdir 'test/em_les' 2> /dev/null
	736	compile em_les > log_compile 2> log_error
	737	# save executables
	738	cd main
	739	if [[ -f ideal.exe ]]
	740	then
	741	echo 'Looks good ! ideal.exe is here...'
	742	fi
	743	if [[ -f wrf.exe ]]
	744	then
	745	echo 'Looks good ! wrf.exe is here...'
	746	fi
[153]	747	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
	748	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}.exe
[142]	749	cd .. ;;
	750	*) echo not supported... please use ; echo ideal les ; exit ;;
[11]	751	esac
	752	echo '*****last lines from log_error*******'
	753	tail -n 20 log_error
	754	fi
	755
	756	# the end
	757	echo '****************************************'
	758	echo 'done.'
	759	echo '****************************************'
[153]	760	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}_s${scat}
[11]	761	mv last ../../
	762
	763	# add here specific messages
	764	if [[ "${dom}" != "1" ]]
	765	then
	766	nest=$(expr ${lon} + 4)
	767	echo NB: in namelist.input, please set:
	768	echo '
	769	max_dom = '$dom'
	770	s_we = 1,1,
	771	e_we = '$lon','$nest',
	772	s_sn = 1,1,
	773	e_sn = '$lat','$nest',
	774	s_vert = 1,1,
	775	e_vert = '$level','$level','
	776	fi
	777

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