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makemeso @ 1751

Last change on this file since 1751 was 1746, checked in by aslmd, 7 years ago
MESOSCALE. makemeso module_initialize_les module_initialize_real reverted back to r1723 because commit r1724 was based on corrupted versions.
Property svn:executable set to ``*
File size: 36.8 KB

Rev	Line
[11]	1	#! /bin/bash
	2
	3
	4	##################################
	5	# makemeso allows you to compile #
	6	# WRF with modified LMD physics #
	7	##################################
	8
	9	##############################
	10	# Author: A. Spiga #
	11	# New version : October 2008 #
	12	# Last update : January 2009 #
	13	# November 09 #
[29]	14	# January 11 #
[11]	15	##############################
	16
[68]	17	###############################
	18	#### Type makemeso -h for help
	19	###############################
[11]	20
	21
	22
	23	##############################################################################################
	24	##############################################################################################
	25	##############################################################################################
	26	##############################################################################################
	27
	28	donotcompile=0
	29	donotallow=0
[1588]	30	config='real'
[11]	31	donotcompilephys=0
	32	justphys=0
	33	debug=0
[54]	34	fresh_start=0
[1588]	35	phys="mars_lmd"
[118]	36	scenario=""
[1038]	37	from_scratch=0
[1440]	38
[1588]	39	while getopts "drc:njhgp:fs:xe" options; do
[11]	40	case $options in
[118]	41	d ) donotcompile=1;; ## just to check the compile folder
	42	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
	43	c ) config="${OPTARG}";; ## idealized cases
	44	n ) donotcompilephys=1;; ## do not recompile physics
	45	j ) justphys=1;; ## just compile LMD physics
	46	g ) debug=1;; ## debug mode
[1588]	47	p ) phys="${OPTARG}";; ## choose physics
[118]	48	f ) fresh_start=1;; ## a fresh start
[1038]	49	e ) from_scratch=1;; ## a fresh start with a completely new folder
[1411]	50	s ) scenario="${OPTARG}";; ## a specific scenario (with precompiling flags)
[1590]	51	x ) donotcompile=1;phys="void_lmd_new";donotcompilephys=1;; ## a case with no LMD physics included
[11]	52	h ) echo "
	53	# Use:
	54	#
[142]	55	# makemeso ## basic use (real-case configuration)
[11]	56	#
	57	# makemeso -d ## no compilation, just check the name of the compile folder
	58	#
[68]	59	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
[142]	60	# makemeso -c les ## large-eddy simulations mode based on WRFV3
[11]	61	#
[70]	62	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
[68]	63	#
[11]	64	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
	65	# makemeso -r < last ## basic use + skip questions + only known config
	66	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
	67	#
	68	# makemeso -j ## just compile the LMD physics
	69	#
	70	# makemeso -g ## debug mode
	71	#
	72	# makemeso -h ## display options
[29]	73	#
[1588]	74	# makemeso -p mars_lmd_new ## choose physics
[1597]	75	# venus_lmd_new
[54]	76	#
	77	# makemeso -f ## fresh start [clean -a]
[118]	78	#
[1578]	79	# makemeso -e ## a completely new recompile with erasing the WHOLE compiling folder
[1038]	80	#
[1411]	81	# makemeso -s DUSTSTORM ## a specific scenario (with precompiling flags)
[156]	82	#
	83	# makemeso -x ## a case with no LMD physics included
[11]	84	" ; exit ;;
	85	esac
	86	done
	87
	88	#--------------
	89	# talk w/ user
	90	#--------------
	91	echo '****************************************'
	92	echo ' LMD Mesoscale Model Compiler. Welcome.'
	93	echo '****************************************'
[1588]	94	if [[ "${phys}" == "new" ]]
[29]	95	then
[1588]	96	echo '*********** PHYSICS: ' ${phys}
[29]	97	echo '****************************************'
	98	fi
[11]	99	# computer
	100	uname -a \| grep x86_64 > /dev/null
	101	if [[ "$?" == 0 ]]
	102	then
	103	machine='64'
	104	else
	105	machine='32'
	106	fi
	107	# compiler
	108	echo "Supported compiler options are "
	109	echo " <1> pgf90"
	110	echo " <2> g95"
	111	echo " <3> pgf90 + mpi"
	112	echo " <4> ifort"
	113	echo " <5> ifort + mpi"
	114	echo " <7> xlf + mpi (IBM AIX)"
	115	echo "Your choice ?" ; read reply
	116	case ${reply} in
	117	1) compilo='pgf' ; numproc=1 ;;
	118	2) compilo='g95' ; numproc=1 ;;
	119	3) compilo='mpi'
[1236]	120	if [[ "${WHERE_MPI}" = "" ]]
[11]	121	then
	122	echo Please initialize the variable WHERE_MPI in your environnement
	123	exit
[1236]	124	fi ;;
[11]	125	4) compilo='ifort' ; numproc=1 ;;
[1236]	126	5) compilo='mpifort' ;;
	127	7) compilo='mpixlf' ;;
	128	### for tests
	129	99) compilo='gnu' ; numproc=1 ;;
[11]	130	*) echo not supported by this script ; exit ;;
	131	esac
[1236]	132	# number of processors
[1597]	133	if [[ "${phys}" == "new" ]]
[1236]	134	then
	135	numproc=999
	136	else
	137	case ${reply} in
	138	3) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
	139	5) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
	140	7) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
	141	esac
	142	fi
	143
[11]	144	# dimensions
	145	if [ ${donotcompile} -eq 0 ]
	146	then
[1212]	147	# ngrid: now dynamically set in newphys 03/2014
[1597]	148	if [[ "${phys}" == "new" ]]
[1212]	149	then
	150	lon=999
	151	lat=999
[1272]	152	level=999
[1236]	153	else
	154	echo Grid points in longitude ? ; read lon
	155	echo Grid points in latitude ? ; read lat
[1272]	156	echo Number of vertical levels ? ; read level
[1212]	157	fi
[11]	158	fi
	159	echo Number of domains ? ; read dom
	160
	161	###PB lecture dom si < last
	162
	163	case ${dom} in
	164	1) single='_single' ;;
	165	*) single='_nest' ;;
	166	esac
	167	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
	168	then
	169	single=''
	170	fi
	171
	172	testflag=''
	173	####
	174	#testflag='_test'
	175	####
	176
[1588]	177	conf_wrf="${phys}_${config}${scenario}_${compilo}_${machine}${single}${testflag}"
[1234]	178
	179	if [ ${debug} -eq 1 ]
	180	then
	181	conf_wrf="debug_${conf_wrf}"
	182	fi
	183
[11]	184	\rm what_folder 2> /dev/null
	185	echo ${conf_wrf} > what_folder
[1590]	186	if [ ${donotcompile} -eq 0 ]
[11]	187	then
[1590]	188	##\rm what_folder 2> /dev/null
	189	##echo '**********************'
	190	##echo '*** Your folder is ...'
	191	##echo '**********************'
	192	##echo ${conf_wrf} \| tee what_folder
	193	##cat what_folder
	194	##echo ${conf_wrf} > what_folder
	195	##echo ${reply} > what_compilo
	196	##echo ${numproc} > what_numproc
	197	#if [[ "${phys}" != "nophys_" ]]
	198	#then
	199	# exit
	200	#fi
	201	#else
[1212]	202	# tracers: now dynamically set in newphys 09/2013
[1597]	203	if [[ "${phys}" == "new" ]]
[1038]	204	then
	205	tra=999
	206	else
[1236]	207	echo Number of tracers ? ; read tra
[1038]	208	if [ ${tra} -eq 0 ]
	209	then
	210	tra=1
	211	fi
[157]	212	fi
[11]	213	fi
[1038]	214	# 'from scratch' case
	215	if [ ${from_scratch} -eq 1 ]
	216	then
	217	echo "***** I ERASE THE FOLDER "${conf_wrf}
	218	\rm -rf ${conf_wrf}
	219	fi
[11]	220	# folder
[1588]	221
[11]	222	mkdir ${conf_wrf} 2> /dev/null
	223	if [[ "$?" == 0 ]]
	224	then
	225	echo new folder ... link sources
[1588]	226	###############################################
[1597]	227	echo ${phys}
[1588]	228	./SRC/SCRIPTS/copy_model -p ${phys} -c ${config}
[215]	229	mv zeWRFV2 ${conf_wrf}/WRFV2
[1588]	230	###############################################
	231	if [[ "${phys}" == "new" ]]
[1411]	232	then
[1588]	233	cd ${conf_wrf}/WRFV2
[1411]	234	if [[ "${config}" != "les" ]]
[118]	235	then
[1411]	236	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
[118]	237	else
[1411]	238	cp -L ../../SRC/LES/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
	239	fi
[1588]	240	cd phys
	241	ln -sf module_lmd_driver.F.new module_lmd_driver.F
	242	cd ..
[1212]	243
[1746]	244	else
	245	cd ${conf_wrf}/WRFV2
	246	cd Registry ; ./Registry.bash ; cd ..
[54]	247	fi
[142]	248	#### sparadrap consequent a l'utilisation de copy_model pour les liens
	249	#### -- car alors il manque fftpack
	250	if [[ "${config}" == "les" ]]
[158]	251	then
[1389]	252	cp ../../SRC/LES/correcfft ./
[142]	253	./correcfft
	254	\rm correcfft
	255	fi
[1588]	256	else
[11]	257	cd ${conf_wrf}/WRFV2
[54]	258	if [ ${fresh_start} -eq 1 ]
	259	then
	260	echo '*** FRESH START, I clean everything'
[318]	261	### clean the whole place
[54]	262	clean -a > /dev/null 2> /dev/null
[318]	263	### get a possibly modified registry !
[1588]	264	if [[ "${phys}" == "new" ]]
[333]	265	then
[1411]	266	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
	267	else
	268	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
[333]	269	fi
[341]	270	if [[ "${config}" == "les" ]]
	271	then
	272	cp ../../SRC/LES/WRFV2/Registry/Registry.EM Registry/
	273	fi
[318]	274	### ensure the model will be recompiled from scratch with correct registry
[54]	275	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
[262]	276	# answer='y' ## a voir... pas si sur
	277	# else
	278	# if [[ "${phys}" != "nophys_" ]]
	279	# then
	280	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
	281	# case ${answer} in
	282	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
	283	# *) answer='no' ;;
	284	# esac
	285	# fi
[54]	286	fi
[11]	287	fi
[153]	288
[11]	289	# summary
	290	echo '**********************'
	291	echo '*** Your folder is ...'
	292	echo '**********************'
	293	echo ${conf_wrf}
	294	echo '**********************'
	295	echo '****************************************'
	296	echo so ...
	297	echo your computer is ${machine} bits
	298	echo ${compilo} is your compiler
	299	if [[ "${compilo}" = "mpi" ]]
	300	then
	301	echo MPICH is in ${WHERE_MPI}
	302	fi
[1272]	303	echo you have ${dom} domains
[1588]	304	if [[ "${phys}" == "new" ]]
[153]	305	then
[1236]	306	echo number of processors can be changed without recompiling
	307	echo x points can be changed without recompiling
	308	echo y points can be changed without recompiling
[1272]	309	echo z points can be changed without recompiling
[1236]	310	echo number of tracers can be changed without recompiling
	311	else
	312	echo you will use ${numproc} processors
	313	echo you have ${lon} x points
	314	echo ' '${lat} y points
[1272]	315	echo ' '${level} z points
[1236]	316	echo ' '${tra} tracers
[153]	317	fi
[11]	318	echo '****************************************'
	319	# save answer
	320	\rm last 2> /dev/null
	321	touch last
	322	echo ${reply} >> last
[1588]	323	if [[ "${phys}" != "new" ]]
[1236]	324	then
	325	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
	326	then
[11]	327	echo ${numproc} >> last
[1236]	328	fi
	329	echo ${lon} >> last
	330	echo ${lat} >> last
[1272]	331	echo ${level} >> last
[1236]	332	fi
[11]	333	echo ${dom} >> last
[1588]	334	if [[ "${phys}" != *"new" ]]
[1236]	335	then
	336	echo ${tra} >> last
	337	fi
[11]	338
	339	#------------
	340	# log files
	341	#------------
	342	\rm log_compile 2> /dev/null
	343	\rm log_error 2> /dev/null
	344
	345	#-----------------
	346	# configure WRF
	347	#-----------------
	348	mv configure.wrf configure.wrf.bak 2> /dev/null
	349	########################
[30]	350	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
[142]	351
	352	#### in this case options are different because for LES, WRFV3 is used
	353	if [[ "${config}" == "les" ]]
	354	then
	355	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
	356	fi
	357
[30]	358	case ${conf_wrf_forall} in
[142]	359
	360	#######LES-specific (WRFV3-based) -- previously in 'makeles'
	361	#######
	362
	363	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
	364	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
	365	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
[1588]	366	sed s+"-lnetcdf"+"-lnetcdf -L../$phys/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[142]	367	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
	368	then
	369	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
	370	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	371	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[158]	372	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	373	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[142]	374	else
[390]	375	#sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	376	#sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	377	#### OPENMPI
	378	sed s+"mpif90 -f90=\$(SFC)"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	379	sed s+"mpicc -cc=\$(SCC)"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[142]	380	fi
	381	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	382	### pas forcement necessaire ici mais OK
	383	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	384	\rm conf > /dev/null ;;
	385
	386	lesmpifort_64) ## MPI (dm) 64 bits IFORT
	387	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
	388	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
[1597]	389	if [[ "${phys}" != "void" ]]
	390	then
	391	sed s+"-lnetcdf"+"-lnetcdf -L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	392	else
	393	sed s+"-lnetcdf"+"-lnetcdf $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	394	fi
[142]	395	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	396	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	397	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
[1597]	398	sed s+"O3"+"O3 -mcmodel=large -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[1587]	399	#sed s+"-lnetcdf -lnetcdff"+"-lnetcdf -lnetcdff -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[674]	400	if [ ${debug} -ne 0 ] # not working for xlf!
	401	then
	402	echo 'DEBUG DEBUG DEBUG DEBUG'
[790]	403	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
[674]	404	mv -f yeah configure.wrf
	405	fi
[142]	406	\rm conf > /dev/null ;;
	407
	408	#######
	409	#######LES-specific (WRFV3-based) -- previously in 'makeles'
	410
[11]	411	#######TEST TEST
	412	# GFORTRAN, 64 bits, no nesting
	413	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
	414	echo 15 \| configure > log_compile 2> log_error
[1588]	415	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	416	sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[11]	417	#######TEST TEST
	418	# PGF90, 32 bits, no nesting
	419	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
[1588]	420	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[11]	421	# PGF90, 32 bits, nesting
	422	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
[1588]	423	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[11]	424	# PGF90, 64 bits, no nesting
	425	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
[330]	426	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
[1588]	427	#sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	428	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[11]	429	# PGF90, 64 bits, nesting
	430	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	431	echo 4 \| configure > log_compile 2> log_error
[1588]	432	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[11]	433	# G95, 32 bits, no nesting
	434	g95_32_single) echo 13 \| configure > log_compile 2> log_error
[1588]	435	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[24]	436	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
	437	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
	438	echo 14 \| configure > log_compile 2> log_error
[330]	439	##### marche pas ....
	440	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
[1588]	441	#sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	442	#sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	443	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[24]	444	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
[11]	445	# IFORT, 64 bits, no nesting
	446	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
	447	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
[674]	448	if [ ${debug} -ne 0 ] # not working for xlf!
	449	then
	450	echo 'DEBUG DEBUG DEBUG DEBUG'
[790]	451	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
[674]	452	mv -f yeah configure.wrf
	453	fi
[11]	454	## !!! NETCDF must be defined
[1588]	455	sed s+"lio_grib_share"+"lio_grib_share -L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
[11]	456	mv -f yeah configure.wrf ;;
	457	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
[1746]	458	echo 9 \| configure > log_compile 2> log_error
[1588]	459	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
[11]	460	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	461	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	462	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
[1440]	463	sed s+"-O1"+"-O1 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	464	sed s+"-O2"+"-O2 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	465	sed s+"-O3"+"-O3 -mcmodel=medium -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[674]	466	if [ ${debug} -ne 0 ] # not working for xlf!
	467	then
	468	echo 'DEBUG DEBUG DEBUG DEBUG'
[1746]	469	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
[674]	470	mv -f yeah configure.wrf
	471	fi
[11]	472	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	473	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
	474	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
	475	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
	476	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
	477	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	478	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	479	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	480	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	481	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	482	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	483	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	484	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	485	### necessary even if mpi-selector is used (no need in makegcm though)
	486	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
	487	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	488	## !!! NETCDF must be defined
[1746]	489	sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
[70]	490	mv -f yeah configure.wrf
	491	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
[71]	492	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
[11]	493	mv -f yeah configure.wrf ;;
	494	# MPICH, 64 bits, no nesting / nesting
	495	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	496	echo 3 \| configure > log_compile 2> log_error
[1588]	497	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
[227]	498	### the following line is necessary because readtesassim has a line "use netcdf" in it!
[1588]	499	sed s+"-L../$phys/libo -llmd"+"-L../$phys/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[11]	500	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
[341]	501	#sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT -w -O3"+g > yeah
[11]	502	#\| sed s+"fastsse"+"fast"+g > yeah
[341]	503	mv -f yeah configure.wrf ;;
[335]	504	# #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
	505	# ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
	506	# ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
	507	#sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah
	508	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
[341]	509	#sed s+"-fastsse"+""+g configure.wrf > yeah
	510	#sed s+"-fastsse"+"-fast"+g configure.wrf > yeah
	511	#sed s+"-fastsse"+"-Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8 -Mfprelaxed"+g configure.wrf > yeah
	512	#mv -f yeah configure.wrf ;;
[11]	513	# MPICH, 64 bits, OK with periodic BC but no positive definite
	514	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	515	echo 2 \| configure > log_compile 2> log_error
[1588]	516	sed -f physics.sed configure.wrf > yeah ; mv -f yeah configure.wrf
[11]	517	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
	518	mv -f yeah configure.wrf ;;
	519	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
	520	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	521	echo 3 \| configure > log_compile 2> log_error
[1588]	522	sed -f physics.sed configure.wrf > yeah
[11]	523	mv -f yeah configure.wrf ;;
	524	# ANYTHING ELSE
	525	*) echo NO PRESETS ...
	526	if [ ${donotallow} -eq 0 ]
	527	then
	528	configure
	529	else
	530	# problem when an input file is used
	531	echo 'please cd to '$PWD' and type ./configure'
	532	exit
	533	fi ;;
	534	esac
	535	########################
	536
[142]	537
[156]	538	### here a case structure would be great
	539
[1588]	540	if [[ "${phys}" == "new" ]]
[29]	541	then
[142]	542	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
	543	then
	544	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
	545	else
	546	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
	547	fi
[29]	548	mv -f yeah configure.wrf
	549	fi
[11]	550
[1411]	551	### SCENARIO SCENARIO SCENARIO
	552	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment?
[118]	553	then
[1411]	554	# precompiling flag in WRF part
[118]	555	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
	556	mv -f yeah configure.wrf
[1411]	557	# precompiling flag in LMD part
[1588]	558	cd $phys
[1411]	559	cp -Lrf makegcm_${compilo} yeah
	560	\rm makegcm_${compilo}
	561	sed s+"-DMESOSCALE"+"-D${scenario} -DMESOSCALE"+ yeah > makegcm_${compilo}
	562	chmod 755 makegcm_${compilo}
	563	\rm yeah
	564	cd ..
[118]	565	fi
	566
[156]	567	################
[1590]	568	#if [[ "${phys}" == "nophys_" ]]
	569	#then
	570	# if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
	571	# then
	572	# sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	573	# sed s+"-L../$phys/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
	574	# else
	575	# ### not tested yet but should be working
	576	# echo CAUTION CAUTION CAUTION NOT FULLY TESTED
	577	# sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	578	# sed s+"-L../$phys/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
	579	# fi
	580	#fi
[156]	581	################
	582
[1597]	583	if [[ "${phys}" == "venus" ]]
	584	then
	585	sed s+"LIB_BUNDLED = "+"LIB_BUNDLED = /usr/lib64/liblapack.so \ "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	586	#sed s+"RWORDSIZE = "+"RWORDSIZE = 8 # "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	587	#sed s+"-DLWORDSIZE=4 "+"-DLWORDSIZE=8 "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	588	#sed s+"-DIWORDSIZE=4 "+"-DIWORDSIZE=8 "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	589	#sed s+"FCBASEOPTS ="+"FCBASEOPTS = -r8 "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	590	#sed s+"-fp-model precise "+"-fpconstant -fp-model precise "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	591	fi
	592
[11]	593	if [ ${debug} -ne 0 ] # not working for xlf!
	594	then
	595	echo 'DEBUG DEBUG DEBUG DEBUG'
[790]	596	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
	597	#sed s+"# -g"+"-g -Ktrap=fp -Mbounds"+g configure.wrf > yeah
	598	#sed s+"# -g"+"-g"+g configure.wrf > yeah
[11]	599	mv -f yeah configure.wrf
	600	fi
	601
[1605]	602	if [[ "${phys}" == "prescribed" ]]
	603	then
	604	donotcompilephys=1
	605	fi
[1597]	606
[1588]	607	#exit
[11]	608	##################################################
	609	# compile physics
	610	##################################################
[1597]	611	if [ ${donotcompilephys} -eq 0 ] #\|\| [[ "${phys}" != "prescribed" ]]
[11]	612	then
	613
[1588]	614	cd $phys/
[11]	615
[1588]	616	if [[ "${phys}" == "new" ]]
[1212]	617	then
	618	divx=1
	619	divy=1
	620	else
[11]	621	# required size
	622	#----------------
	623	case ${numproc} in
[239]	624	1) divx=1 ; divy=1 ;;
	625	2) divx=1 ; divy=2 ;;
	626	4) divx=2 ; divy=2 ;;
	627	6) divx=2 ; divy=3 ;;
	628	8) divx=2 ; divy=4 ;;
	629	12) divx=3 ; divy=4 ;;
	630	16) divx=4 ; divy=4 ;;
	631	20) divx=4 ; divy=5 ;;
	632	24) divx=4 ; divy=6 ;;
	633	32) divx=4 ; divy=8 ;;
	634	64) divx=8 ; divy=8 ;;
	635	128) divx=8 ; divy=16 ;;
	636	*) echo not yet supported ; exit ;;
[11]	637	esac
[1212]	638	fi
[240]	639	physx=$(expr ${lon} - 1)
	640	restex=$(expr ${physx} \% ${divx})
	641	physy=$(expr ${lat} - 1)
	642	restey=$(expr ${physy} \% ${divy})
[239]	643	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
	644	then
	645	echo nx-1 shall be divided by ${divx}
	646	echo ny-1 shall be divided by ${divy}
	647	exit
	648	fi
[240]	649	physx=$(expr ${physx} \/ ${divx})
	650	physy=$(expr ${physy} \/ ${divy})
[239]	651	physz=$(expr ${level} - 1)
[11]	652
	653	# change this if you change num_soil_layers in WRF
	654	# -- default is 10
[1588]	655	if [[ "${phys}" == "new" ]]
[30]	656	then
[1212]	657	soilsize=18 ## nouvelle physique. ne sert a rien ici. voir comsoil.
[30]	658	else
	659	soilsize=10
	660	fi
[11]	661
	662	# GCM environment variables
	663	#--------------------------
	664	export LMDGCM=$PWD
	665	export LIBOGCM=$PWD/libo
	666
	667	# generate the appropriate dimphys
	668	#---------------------------------
[1597]	669	if [[ "${phys}" == "mars" ]]
	670	then
	671	cd libf/phymars
	672	elif [[ "${phys}" == "venus" ]]
	673	then
	674	cd libf/phyvenus
	675	fi
[11]	676	\rm dimphys.h 2> /dev/null
[1746]	677	# if [[ "${phys}" == "newphys_" ]]
	678	# then
	679	# ln -sf ../../meso_dimphys.h_ref . ## ne sert plus !!
	680	# else
	681	if [[ "${phys}" == "mars_lmd" ]]
[235]	682	then
[1272]	683	physize=$(expr ${physx} \* ${physy})
	684	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
	685	head -15 dimphys.h
[235]	686	fi
[1746]	687	#### TEST new new phys
[1578]	688	#if [[ "${phys}" == "newphys_" ]]
	689	#then
	690	# touch gr_fi_dyn.F.lien
	691	# ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
[1746]	692	################################
	693	################################
	694	################################
[1578]	695	#fi
[1746]	696	####
	697	####
[11]	698	cd ../..
	699
	700	# prepare for nesting
	701	#---------------------
	702	cd libf
	703	duplicate${dom} 2> /dev/null
	704	cd ..
	705
	706	# compile physics
	707	#--------------------------
	708	\rm libf/grid/dimensions.h 2> /dev/null
	709	\rm -rf libo/* 2> /dev/null
	710	echo 1. compiling LMD physics ...
	711	echo compilation info in:
	712	echo $PWD/libo/log_compile_phys
[1746]	713
[1597]	714	if [ ${debug} -ne 0 ]
[11]	715	then
[1597]	716	if [[ "${phys}" == "mars" ]]
	717	then
	718	echo 'DEBUG DEBUG DEBUG DEBUG'
[1746]	719	nohup makegcm_${compilo} -debug -full -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
[1597]	720	elif [[ "${phys}" == "venus" ]]
	721	then
	722	echo 'DEBUG DEBUG DEBUG DEBUG'
[1746]	723	nohup makelmdz -debug -full -p venus -d 181 rcm1d -arch linux-ifort -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
[1597]	724	fi
[11]	725	else
[1746]	726	if [[ "${phys}" == "mars" ]]
[1597]	727	then
	728	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
	729	elif [[ "${phys}" == "venus" ]]
	730	then
[1746]	731	nohup makelmdz -full -p venus -d 51 rcm1d -arch linux-ifort -cpp MESOSCALE \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
[1597]	732	fi
[11]	733	fi
	734	echo ... done
	735	# clean the duplicate routines
	736	cd libf
	737	duplicate1 2> /dev/null
	738	cd ..
	739
	740	# merge LMD executables in one lib
	741	#--------------------------------------
	742	cd libo
	743	mkdir temp
[1746]	744	if [[ "${phys}" == "venus" ]]
[1601]	745	then
[1746]	746	cp -f linux/.a temp/
[1601]	747	cp -f ../ioipsl/libioipsl.a temp/
[1597]	748	else
	749	cp -f LINUX/.a temp/
	750	fi
[11]	751	cd temp
[1597]	752	if [[ "${phys}" == "mars" ]]
	753	then
	754	ar x libbibio.a
	755	ar x libphymars.a
	756	ar x libaeronomars.a
[1746]	757	else
[1597]	758	ar x libphyvenus.a
	759	ar x libmisc.a
	760	ar x libphy_common.a
[1601]	761	ar x libioipsl.a
[1597]	762	fi
[11]	763	\rm *.a
	764	ar r liblmd.a *
	765	cp -f liblmd.a ..
	766	cd ..
	767	\rm -r temp
	768	nm liblmd.a > liblmd_content
	769	# finish merge
	770	cd ..
[1588]	771	if [[ "${phys}" == "new" ]]
[1234]	772	then
[1597]	773	if [[ "${phys}" == "mars" ]]
	774	then
	775	# include modules for interfacing
	776	mv *.mod ../inc/
[1746]	777	else # [[ "${phys}" == "venus" ]]
	778	mv ./libo/linux/.mod ../inc/
[1601]	779	cp -f ./ioipsl/*.mod ../inc/
[1746]	780
[1597]	781	fi
[1234]	782	fi
	783
[1597]	784
[11]	785	# save a copy
	786	#--------------
[1247]	787	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}
[11]	788	echo '****************************************'
	789
	790	# ok
	791	#----
	792	cd ..
	793
	794	# manage nest includes in module_lmd_driver.F
	795	#----
	796	cp call_meso_inifis$dom.inc call_meso_inifis.inc
	797	cp call_meso_physiq$dom.inc call_meso_physiq.inc
	798
	799
	800	fi
	801	##################################################
	802	# END compile physics
	803	##################################################
	804
	805	#------------------
	806	# compile WRF
	807	#------------------
	808	if [ ${justphys} -eq 0 ]
	809	then
	810
	811	echo 2. compiling WRF dynamical core ...
	812
[1590]	813	#if [[ "${phys}" == "nophys_" ]]
	814	#then
	815	# echo 'NO LMD PHYSICS included'
	816	#else
	817	# if [[ ! ( -f "call_meso_physiq.inc" ) ]]
	818	# then
	819	# echo 'did you compile the physics ? no call_meso_physiq.inc !'
	820	# exit
	821	# fi
	822	#fi
[11]	823
	824	# be sure to compile with the most recent physics
	825	touch phys/module_lmd_driver.F
	826
	827	# talk to user
	828	echo '>>> compiling ... this may be long ... <<<'
	829	echo check progress in:
	830	echo $PWD/log_compile
	831	echo check possible errors in:
	832	echo $PWD/log_error
	833
	834	# compile ...
[1588]	835	echo '>>> YOUR CONFIG IS : '${config}
[11]	836	case ${config} in
[1588]	837	'real') ./compile em_real > log_compile 2> log_error
[11]	838	# save executables
	839	cd main
[68]	840	if [[ -f real.exe ]]
	841	then
	842	echo 'Looks good ! real.exe is here...'
	843	fi
[11]	844	if [[ -f wrf.exe ]]
	845	then
	846	echo 'Looks good ! wrf.exe is here...'
	847	fi
[1247]	848	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
	849	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
[11]	850	cd .. ;;
[68]	851	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
[1588]	852	#echo '>>> YOUR CONFIG IS : '${config}
[421]	853	./compile em_quarter_ss > log_compile 2> log_error
[11]	854	# save executables
	855	cd main
[68]	856	if [[ -f ideal.exe ]]
	857	then
	858	echo 'Looks good ! ideal.exe is here...'
	859	fi
[11]	860	if [[ -f wrf.exe ]]
	861	then
	862	echo 'Looks good ! wrf.exe is here...'
	863	fi
[1247]	864	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
	865	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
[11]	866	cd .. ;;
[1588]	867	'les') #echo '>>> YOUR CONFIG IS : '${config}
[142]	868	mkdir 'test/em_les' 2> /dev/null
[421]	869	./compile em_les > log_compile 2> log_error
[142]	870	# save executables
	871	cd main
	872	if [[ -f ideal.exe ]]
	873	then
	874	echo 'Looks good ! ideal.exe is here...'
	875	fi
	876	if [[ -f wrf.exe ]]
	877	then
	878	echo 'Looks good ! wrf.exe is here...'
	879	fi
[1247]	880	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
	881	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
[142]	882	cd .. ;;
	883	*) echo not supported... please use ; echo ideal les ; exit ;;
[11]	884	esac
	885	echo '*****last lines from log_error*******'
	886	tail -n 20 log_error
	887	fi
	888
	889	# the end
	890	echo '****************************************'
	891	echo 'done.'
	892	echo '****************************************'
[1247]	893	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}
[11]	894	mv last ../../
[1247]	895	svn info ../../ > ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.svn.info
[11]	896
[1445]	897
	898
	899	# link latest compiled folder as LATEST
	900	cd ../../
[1448]	901	rm -rf LATEST
[1445]	902	ln -sf ${conf_wrf} LATEST
	903
[11]	904	# add here specific messages
	905	if [[ "${dom}" != "1" ]]
	906	then
	907	nest=$(expr ${lon} + 4)
	908	echo NB: in namelist.input, please set:
	909	echo '
	910	max_dom = '$dom'
	911	s_we = 1,1,
	912	e_we = '$lon','$nest',
	913	s_sn = 1,1,
	914	e_sn = '$lat','$nest',
	915	s_vert = 1,1,
	916	e_vert = '$level','$level','
	917	fi
	918
[1588]	919

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