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makemeso @ 1421

Last change on this file since 1421 was 1411, checked in by aslmd, 10 years ago
MESOSCALE: a change in lmd_driver to get the right amount of dust in DUSTSTORM mode. changed makemeso to allow for a simple compilation with option -s DUSTSTORM
Property svn:executable set to ``*
File size: 35.5 KB

Rev	Line
[11]	1	#! /bin/bash
	2
	3
	4	##################################
	5	# makemeso allows you to compile #
	6	# WRF with modified LMD physics #
	7	##################################
	8
	9	##############################
	10	# Author: A. Spiga #
	11	# New version : October 2008 #
	12	# Last update : January 2009 #
	13	# November 09 #
[29]	14	# January 11 #
[11]	15	##############################
	16
[68]	17	###############################
	18	#### Type makemeso -h for help
	19	###############################
[11]	20
	21
	22
	23	##############################################################################################
	24	##############################################################################################
	25	##############################################################################################
	26	##############################################################################################
	27
	28	donotcompile=0
	29	donotallow=0
[142]	30	config=''
[11]	31	donotcompilephys=0
	32	justphys=0
	33	debug=0
[54]	34	fresh_start=0
[29]	35	phys=""
[118]	36	scenario=""
[1038]	37	from_scratch=0
	38	while getopts "drc:njhgpfs:xe" options; do
[11]	39	case $options in
[118]	40	d ) donotcompile=1;; ## just to check the compile folder
	41	r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last')
	42	c ) config="${OPTARG}";; ## idealized cases
	43	n ) donotcompilephys=1;; ## do not recompile physics
	44	j ) justphys=1;; ## just compile LMD physics
	45	g ) debug=1;; ## debug mode
	46	p ) phys="newphys_";; ## with new physics
	47	f ) fresh_start=1;; ## a fresh start
[1038]	48	e ) from_scratch=1;; ## a fresh start with a completely new folder
[1411]	49	s ) scenario="${OPTARG}";; ## a specific scenario (with precompiling flags)
[157]	50	x ) donotcompile=1;phys="nophys_";donotcompilephys=1;; ## a case with no LMD physics included
[11]	51	h ) echo "
	52	# Use:
	53	#
[142]	54	# makemeso ## basic use (real-case configuration)
[11]	55	#
	56	# makemeso -d ## no compilation, just check the name of the compile folder
	57	#
[68]	58	# makemeso -c ideal ## idealized mode (convective cell, mountain wave, etc...)
[142]	59	# makemeso -c les ## large-eddy simulations mode based on WRFV3
[11]	60	#
[70]	61	# makemeso -n ## do not recompile LMD physics (must have been compiled before)
[68]	62	#
[11]	63	# makemeso < last ## basic use + skip questions [! script must have been executed at least once]
	64	# makemeso -r < last ## basic use + skip questions + only known config
	65	# makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile
	66	#
	67	# makemeso -j ## just compile the LMD physics
	68	#
	69	# makemeso -g ## debug mode
	70	#
	71	# makemeso -h ## display options
[29]	72	#
	73	# makemeso -p ## with new LMD physics
[54]	74	#
	75	# makemeso -f ## fresh start [clean -a]
[118]	76	#
[1038]	77	# makemeso -e ## a completely new recompile with erasing ALL compiling folder
	78	#
[1411]	79	# makemeso -s DUSTSTORM ## a specific scenario (with precompiling flags)
[156]	80	#
	81	# makemeso -x ## a case with no LMD physics included
[11]	82	" ; exit ;;
	83	esac
	84	done
	85
	86	#--------------
	87	# talk w/ user
	88	#--------------
	89	echo '****************************************'
	90	echo ' LMD Mesoscale Model Compiler. Welcome.'
	91	echo '****************************************'
[29]	92	if [[ "${phys}" == "newphys_" ]]
	93	then
	94	echo '*********with new physics***********'
	95	echo '****************************************'
	96	fi
[11]	97	# computer
	98	uname -a \| grep x86_64 > /dev/null
	99	if [[ "$?" == 0 ]]
	100	then
	101	machine='64'
	102	else
	103	machine='32'
	104	fi
	105	# compiler
	106	echo "Supported compiler options are "
	107	echo " <1> pgf90"
	108	echo " <2> g95"
	109	echo " <3> pgf90 + mpi"
	110	echo " <4> ifort"
	111	echo " <5> ifort + mpi"
	112	echo " <7> xlf + mpi (IBM AIX)"
	113	echo "Your choice ?" ; read reply
	114	case ${reply} in
	115	1) compilo='pgf' ; numproc=1 ;;
	116	2) compilo='g95' ; numproc=1 ;;
	117	3) compilo='mpi'
[1236]	118	if [[ "${WHERE_MPI}" = "" ]]
[11]	119	then
	120	echo Please initialize the variable WHERE_MPI in your environnement
	121	exit
[1236]	122	fi ;;
[11]	123	4) compilo='ifort' ; numproc=1 ;;
[1236]	124	5) compilo='mpifort' ;;
	125	7) compilo='mpixlf' ;;
	126	### for tests
	127	99) compilo='gnu' ; numproc=1 ;;
[11]	128	*) echo not supported by this script ; exit ;;
	129	esac
[1236]	130	# number of processors
[1389]	131	if [ "${phys}" == "newphys_" ] \|\| [ "${phys}" == "nophys_" ]
[1236]	132	then
	133	numproc=999
	134	else
	135	case ${reply} in
	136	3) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
	137	5) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
	138	7) echo How many processors ? e.g. 1, 2, 4, 6, 8, 12, 16, 20, 24, 32, 64, 128 ; read numproc ;;
	139	esac
	140	fi
	141
[11]	142	# dimensions
	143	if [ ${donotcompile} -eq 0 ]
	144	then
[1212]	145	# ngrid: now dynamically set in newphys 03/2014
	146	if [[ "${phys}" == "newphys_" ]]
	147	then
	148	lon=999
	149	lat=999
[1272]	150	level=999
[1236]	151	else
	152	echo Grid points in longitude ? ; read lon
	153	echo Grid points in latitude ? ; read lat
[1272]	154	echo Number of vertical levels ? ; read level
[1212]	155	fi
[11]	156	fi
	157	echo Number of domains ? ; read dom
	158
	159	###PB lecture dom si < last
	160
	161	case ${dom} in
	162	1) single='_single' ;;
	163	*) single='_nest' ;;
	164	esac
	165	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
	166	then
	167	single=''
	168	fi
	169
	170	testflag=''
	171	####
	172	#testflag='_test'
	173	####
	174
[142]	175	conf_wrf="${config}${scenario}${phys}${compilo}_${machine}${single}${testflag}"
[1234]	176
	177	if [ ${debug} -eq 1 ]
	178	then
	179	conf_wrf="debug_${conf_wrf}"
	180	fi
	181
[11]	182	\rm what_folder 2> /dev/null
	183	echo ${conf_wrf} > what_folder
	184	if [ ${donotcompile} -eq 1 ]
	185	then
	186	#\rm what_folder 2> /dev/null
	187	#echo '**********************'
	188	#echo '*** Your folder is ...'
	189	#echo '**********************'
	190	#echo ${conf_wrf} \| tee what_folder
	191	#cat what_folder
	192	#echo ${conf_wrf} > what_folder
	193	#echo ${reply} > what_compilo
	194	#echo ${numproc} > what_numproc
[157]	195	if [[ "${phys}" != "nophys_" ]]
	196	then
	197	exit
	198	fi
	199	else
[1212]	200	# tracers: now dynamically set in newphys 09/2013
[1038]	201	if [[ "${phys}" == "newphys_" ]]
	202	then
	203	tra=999
	204	else
[1236]	205	echo Number of tracers ? ; read tra
[1038]	206	if [ ${tra} -eq 0 ]
	207	then
	208	tra=1
	209	fi
[157]	210	fi
[11]	211	fi
[1038]	212	# 'from scratch' case
	213	if [ ${from_scratch} -eq 1 ]
	214	then
	215	echo "***** I ERASE THE FOLDER "${conf_wrf}
	216	\rm -rf ${conf_wrf}
	217	fi
[11]	218	# folder
	219	mkdir ${conf_wrf} 2> /dev/null
	220	if [[ "$?" == 0 ]]
	221	then
	222	echo new folder ... link sources
[29]	223	if [[ "${phys}" == "newphys_" ]]
	224	then
[247]	225	\rm copy_model_tmp > /dev/null 2> /dev/null
[1411]	226	sed s+"mars_lmd"+"mars_lmd_new"+g SRC/SCRIPTS/copy_model > copy_model_tmp
[142]	227	if [[ "${config}" == "les" ]]
	228	then
	229	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g copy_model_tmp > yeah
	230	mv yeah copy_model_tmp
	231	fi
[54]	232	chmod 755 copy_model_tmp
	233	./copy_model_tmp
	234	\rm copy_model_tmp
[215]	235	mv zeWRFV2 ${conf_wrf}/WRFV2
[54]	236	cd ${conf_wrf}/WRFV2
[1411]	237	ln -sf mars_lmd_new mars_lmd
	238	if [[ "${phys}" == "newphys_" ]]
	239	then
	240	if [[ "${config}" != "les" ]]
[118]	241	then
[1411]	242	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
[118]	243	else
[1411]	244	cp -L ../../SRC/LES/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
	245	fi
	246	fi
	247	cd phys
	248	ln -sf module_lmd_driver.F.new module_lmd_driver.F
	249	cd ..
[1212]	250
	251	# remove files adapted to parallel GCM and useless for mesoscale
	252	cd mars_lmd
	253	cd libf/phymars
	254	\rm tabfi* soil_settings* phyetat0* phyredem* iostart* writediagfi* mkstat* writediagsoil* eofdump* wstats* inistats* mod_*
[1214]	255	\rm iniphysiq* init_phys_lmdz* comgeomphy* planetwide_mod*
[1212]	256	mv ../dyn3d/control_mod.F90 .
	257	cd ../..
	258	cd ..
	259
[29]	260	else
[142]	261	if [[ "${config}" == "les" ]]
	262	then
[1389]	263	#### NB: With physics: LES folder // Without physics : LESnophys_ folder
	264	#### ---- because differences in 'modif' folder ----
	265	#sed s+"PWD/SRC/"+"PWD/SRC/LES$phys/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
	266	sed s+"PWD/SRC/"+"PWD/SRC/LES/"+g SRC/SCRIPTS/copy_model > copy_model_tmp
[142]	267	else
[216]	268	cp SRC/SCRIPTS/copy_model copy_model_tmp
[142]	269	fi
	270	chmod 755 copy_model_tmp
	271	./copy_model_tmp
	272	\rm copy_model_tmp
[235]	273	mv zeWRFV2 ${conf_wrf}/WRFV2
[54]	274	cd ${conf_wrf}/WRFV2
[856]	275	cd Registry ; ./Registry.bash ; cd ..
[54]	276	fi
[142]	277	#### sparadrap consequent a l'utilisation de copy_model pour les liens
	278	#### -- car alors il manque fftpack
	279	if [[ "${config}" == "les" ]]
[158]	280	then
[1389]	281	#if [[ "${phys}" == "nophys_" ]]
	282	#then
	283	# ## voir ci-dessus pour le folder
	284	# cp ../../SRC/LES$phys/correcfft ./
	285	#else
	286	# cp ../../SRC/LES/correcfft ./
	287	#fi
	288	cp ../../SRC/LES/correcfft ./
[142]	289	./correcfft
	290	\rm correcfft
	291	fi
[11]	292	else
	293	cd ${conf_wrf}/WRFV2
[54]	294	if [ ${fresh_start} -eq 1 ]
	295	then
	296	echo '*** FRESH START, I clean everything'
[318]	297	### clean the whole place
[54]	298	clean -a > /dev/null 2> /dev/null
[318]	299	### get a possibly modified registry !
[1411]	300	if [[ "${phys}" == "newphys_" ]]
[333]	301	then
[1411]	302	cp ../../SRC/WRFV2/Registry/Registry.EM.newphys Registry/Registry.EM
	303	else
	304	cp ../../SRC/WRFV2/Registry/Registry.EM Registry/
[333]	305	fi
[341]	306	if [[ "${config}" == "les" ]]
	307	then
	308	cp ../../SRC/LES/WRFV2/Registry/Registry.EM Registry/
	309	fi
[318]	310	### ensure the model will be recompiled from scratch with correct registry
[54]	311	cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd ..
[262]	312	# answer='y' ## a voir... pas si sur
	313	# else
	314	# if [[ "${phys}" != "nophys_" ]]
	315	# then
	316	# echo Did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer
	317	# case ${answer} in
	318	# y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;;
	319	# *) answer='no' ;;
	320	# esac
	321	# fi
[54]	322	fi
[11]	323	fi
[153]	324
[11]	325	# summary
	326	echo '**********************'
	327	echo '*** Your folder is ...'
	328	echo '**********************'
	329	echo ${conf_wrf}
	330	echo '**********************'
	331	echo '****************************************'
	332	echo so ...
	333	echo your computer is ${machine} bits
	334	echo ${compilo} is your compiler
	335	if [[ "${compilo}" = "mpi" ]]
	336	then
	337	echo MPICH is in ${WHERE_MPI}
	338	fi
[1272]	339	echo you have ${dom} domains
[153]	340	if [[ "${phys}" == "newphys_" ]]
	341	then
[1236]	342	echo number of processors can be changed without recompiling
	343	echo x points can be changed without recompiling
	344	echo y points can be changed without recompiling
[1272]	345	echo z points can be changed without recompiling
[1236]	346	echo number of tracers can be changed without recompiling
	347	else
	348	echo you will use ${numproc} processors
	349	echo you have ${lon} x points
	350	echo ' '${lat} y points
[1272]	351	echo ' '${level} z points
[1236]	352	echo ' '${tra} tracers
[153]	353	fi
[11]	354	echo '****************************************'
	355	# save answer
	356	\rm last 2> /dev/null
	357	touch last
	358	echo ${reply} >> last
[1236]	359	if [[ "${phys}" != "newphys_" ]]
	360	then
	361	if [ "${compilo}" = "mpi" -o "${compilo}" = "mpifort" -o "${compilo}" = "mpixlf" ]
	362	then
[11]	363	echo ${numproc} >> last
[1236]	364	fi
	365	echo ${lon} >> last
	366	echo ${lat} >> last
[1272]	367	echo ${level} >> last
[1236]	368	fi
[11]	369	echo ${dom} >> last
[1236]	370	if [[ "${phys}" != "newphys_" ]]
	371	then
	372	echo ${tra} >> last
	373	fi
[11]	374
	375	#------------
	376	# log files
	377	#------------
	378	\rm log_compile 2> /dev/null
	379	\rm log_error 2> /dev/null
	380
	381	#-----------------
	382	# configure WRF
	383	#-----------------
	384	mv configure.wrf configure.wrf.bak 2> /dev/null
	385	########################
[30]	386	conf_wrf_forall="${compilo}_${machine}${single}${testflag}"
[142]	387
	388	#### in this case options are different because for LES, WRFV3 is used
	389	if [[ "${config}" == "les" ]]
	390	then
	391	conf_wrf_forall="${config}${compilo}_${machine}${single}${testflag}"
	392	fi
	393
[30]	394	case ${conf_wrf_forall} in
[142]	395
	396	#######LES-specific (WRFV3-based) -- previously in 'makeles'
	397	#######
	398
	399	lesmpi_64) ## MPI (dm) 64 bits [PS: remplacer 3 par 4 pour openMP]
	400	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 3 >> conf ; echo 1 >> conf
	401	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
	402	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	403	if [[ "$(hostname)" == "ciclad1.ipsl.jussieu.fr" ]]
	404	then
	405	echo "SPECIFIC CHANGES FOR CICLAD CLUSTER. EDIT makemeso IF YOU ENCOUNTER PROBLEMS."
	406	#sed s+"mpif90 -f90=$(SFC)"+"/usr/lib64/openmpi/1.4.2-pgf/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	407	#sed s+"mpicc -cc=$(SCC)"+"/usr/lib64/openmpi/1.4.2-gfortran/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[158]	408	sed s+"mpif90 -f90=\$(SFC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	409	sed s+"mpicc -cc=\$(SCC)"+"/usr/lib64/openmpi/1.4.3-pgfgcc/bin/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[142]	410	else
[390]	411	#sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	412	#sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	413	#### OPENMPI
	414	sed s+"mpif90 -f90=\$(SFC)"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	415	sed s+"mpicc -cc=\$(SCC)"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[142]	416	fi
	417	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	418	### pas forcement necessaire ici mais OK
	419	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	420	\rm conf > /dev/null ;;
	421
	422	lesmpifort_64) ## MPI (dm) 64 bits IFORT
	423	\rm conf > /dev/null 2> /dev/null ; touch conf ; echo 7 >> conf ; echo 1 >> conf
	424	\rm configure.wrf > /dev/null 2> /dev/null ; ./configure < conf > /dev/null 2> /dev/null
	425	sed s+"-lnetcdf"+"-lnetcdf -L../mars_lmd/libo -llmd"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	426	sed s+"mpif90"+"$WHERE_MPI/mpif90"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	427	sed s+"mpicc"+"$WHERE_MPI/mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	428	sed s+"-fastsse"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
[666]	429	sed s+"O3"+"O3 -mcmodel=large -shared-intel"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[142]	430	sed s+"-llmd"+"-llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[674]	431	if [ ${debug} -ne 0 ] # not working for xlf!
	432	then
	433	echo 'DEBUG DEBUG DEBUG DEBUG'
[790]	434	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
[674]	435	mv -f yeah configure.wrf
	436	fi
[142]	437	\rm conf > /dev/null ;;
	438
	439	#######
	440	#######LES-specific (WRFV3-based) -- previously in 'makeles'
	441
[11]	442	#######TEST TEST
	443	# GFORTRAN, 64 bits, no nesting
	444	gnu_64_single) cd arch ; ln -sf ../configure.defaults.gfortran64 configure.defaults ; cd ..
	445	echo 15 \| configure > log_compile 2> log_error
	446	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	447	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	448	#######TEST TEST
	449	# PGF90, 32 bits, no nesting
	450	pgf_32_single) echo 1 \| configure > log_compile 2> log_error
	451	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	452	# PGF90, 32 bits, nesting
	453	pgf_32_nest) echo 2 \| configure > log_compile 2> log_error
	454	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	455	# PGF90, 64 bits, no nesting
	456	pgf_64_single) echo 1 \| configure > log_compile 2> log_error
[330]	457	#### the following line is necessary because readtesassim has a line "use netcdf" in it!
	458	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[11]	459	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	460	# PGF90, 64 bits, nesting
	461	pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	462	echo 4 \| configure > log_compile 2> log_error
	463	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	464	# G95, 32 bits, no nesting
	465	g95_32_single) echo 13 \| configure > log_compile 2> log_error
	466	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[24]	467	# G95, 64 bits, no nesting ### we modify configure.defaults to add x86_64 next to g95 in the header comment
	468	g95_64_single) cd arch ; sed s/"PC Linux i486 i586 i686, g95 compiler"/"PC Linux i486 i586 i686 x86_64, g95 compiler"/g configure.defaults > yeahyeahyeah ; rm configure.defaults ; mv yeahyeahyeah configure.defaults ; cd ..
	469	echo 14 \| configure > log_compile 2> log_error
[330]	470	##### marche pas ....
	471	#sed s+"-fno-second-underscore"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
	472	#sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	473	#sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf ;;
[24]	474	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf ;;
	475	#sed s+"= g95"+"= /home/physastro/aspiga/mysoft/g95/g95-install/bin/x86_64-unknown-linux-gnu-g95"+g configure.wrf > yeah ; mv -f yeah configure.wrf;;
[11]	476	# IFORT, 64 bits, no nesting
	477	ifort_64_single) echo 5 \| configure > log_compile 2> log_error
	478	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
[674]	479	if [ ${debug} -ne 0 ] # not working for xlf!
	480	then
	481	echo 'DEBUG DEBUG DEBUG DEBUG'
[790]	482	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
[674]	483	mv -f yeah configure.wrf
	484	fi
[11]	485	## !!! NETCDF must be defined
	486	sed s+"lio_grib_share"+"lio_grib_share -L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
	487	mv -f yeah configure.wrf ;;
	488	mpifort_64) # MPI+IFORT, 64 bits, no nesting / nesting
	489	echo 9 \| configure > log_compile 2> log_error
	490	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	491	sed s+"-f90=ifort"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	492	sed s+"-cc=icc"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	493	sed s+"-DIFORT_KLUDGE"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
[674]	494	if [ ${debug} -ne 0 ] # not working for xlf!
	495	then
	496	echo 'DEBUG DEBUG DEBUG DEBUG'
[790]	497	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
[674]	498	mv -f yeah configure.wrf
	499	fi
[11]	500	sed s+"O3"+"O2"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	501	#sed s+"O3"+"O0"+g configure.wrf > yeah ; mv -f yeah configure.wrf ### pour compilation rapide
	502	#-w -ftz -align all -fno-alias -fp-model precise >>> options indiquees dans WRF3
	503	#http://software.intel.com/en-us/articles/performance-tools-for-software-developers-building-wrf-with-the-intel-compilers/
	504	#### NB: RSL is replaced by RSL_LITE, better memory capacity, less seg fault
	505	sed s+"../external/RSL/RSL"+"../external/RSL_LITE"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	506	sed s+"-DWRF_RSL_IO"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	507	sed s+"-DRSL"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	508	sed s+"librsl.a"+"librsl_lite.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	509	sed s+"../external/RSL/gen"+"../external/RSL_LITE/gen"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	510	sed s+"../external/RSL/module"+"../external/RSL_LITE/module"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	511	sed s+"-lrsl"+"-lrsl_lite"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	512	sed s+"linux"+" "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	513	### necessary even if mpi-selector is used (no need in makegcm though)
	514	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g > yeah ; mv -f yeah configure.wrf
	515	sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g configure.wrf > yeah ; mv -f yeah configure.wrf
	516	## !!! NETCDF must be defined
	517	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah
[70]	518	mv -f yeah configure.wrf
	519	#### POUR LE TRAITEMENT PARTICULIERS des NESTS sur iDATAPLEX [cf. module_lmd_driver]
[71]	520	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DSPECIAL_NEST_SAVE "+g configure.wrf > yeah
[11]	521	mv -f yeah configure.wrf ;;
	522	# MPICH, 64 bits, no nesting / nesting
	523	mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	524	echo 3 \| configure > log_compile 2> log_error
	525	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
[227]	526	### the following line is necessary because readtesassim has a line "use netcdf" in it!
	527	sed s+"-L../mars_lmd/libo -llmd"+"-L../mars_lmd/libo -llmd $NETCDF/lib/libnetcdf.a"+g configure.wrf > yeah ; mv -f yeah configure.wrf
[11]	528	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
[341]	529	#sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT -w -O3"+g > yeah
[11]	530	#\| sed s+"fastsse"+"fast"+g > yeah
[341]	531	mv -f yeah configure.wrf ;;
[335]	532	# #sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
	533	# ##sed s+"-fastsse"+"-O2 -fpic"+g configure.wrf > yeah ## marche pas, ILM problem
	534	# ##sed s+"-fastsse"+"-mcmodel=medium -Mlarge_arrays"+g configure.wrf > yeah ## marche pas, ILM problem
	535	#sed s+"-fastsse"+"-O3 -tp=nehalem-64 -fastsse -Mscalarsse -Mvect=sse -Mipa=fast"+g configure.wrf > yeah
	536	#sed s+"-fastsse"+"-O2 -Munroll -Mcache_align"+g configure.wrf > yeah
[341]	537	#sed s+"-fastsse"+""+g configure.wrf > yeah
	538	#sed s+"-fastsse"+"-fast"+g configure.wrf > yeah
	539	#sed s+"-fastsse"+"-Mvect=noaltcode -Msmartalloc -Mprefetch=distance:8 -Mfprelaxed"+g configure.wrf > yeah
	540	#mv -f yeah configure.wrf ;;
[11]	541	# MPICH, 64 bits, OK with periodic BC but no positive definite
	542	mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	543	echo 2 \| configure > log_compile 2> log_error
	544	sed -f mars.sed configure.wrf > yeah ; mv -f yeah configure.wrf
	545	sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf \| sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g \| sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah
	546	mv -f yeah configure.wrf ;;
	547	# XLF+MPICH on AIX machine (64 bits) with nesting, NB: the 32bits notice is not to be considered
	548	mpixlf_32) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd ..
	549	echo 3 \| configure > log_compile 2> log_error
	550	sed -f mars.sed configure.wrf > yeah
	551	mv -f yeah configure.wrf ;;
	552	# ANYTHING ELSE
	553	*) echo NO PRESETS ...
	554	if [ ${donotallow} -eq 0 ]
	555	then
	556	configure
	557	else
	558	# problem when an input file is used
	559	echo 'please cd to '$PWD' and type ./configure'
	560	exit
	561	fi ;;
	562	esac
	563	########################
	564
[142]	565
[156]	566	### here a case structure would be great
	567
[29]	568	if [[ "${phys}" == "newphys_" ]]
	569	then
[142]	570	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
	571	then
	572	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNEWPHYS "+g configure.wrf > yeah
	573	else
	574	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNEWPHYS "+g configure.wrf > yeah
	575	fi
[29]	576	mv -f yeah configure.wrf
	577	fi
[11]	578
[1411]	579	### SCENARIO SCENARIO SCENARIO
	580	if [[ ! ("${scenario}" == "") ]] ### not supported with LES for the moment?
[118]	581	then
[1411]	582	# precompiling flag in WRF part
[118]	583	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -D${scenario} "+g configure.wrf > yeah
	584	mv -f yeah configure.wrf
[1411]	585	# precompiling flag in LMD part
	586	cd mars_lmd
	587	cp -Lrf makegcm_${compilo} yeah
	588	\rm makegcm_${compilo}
	589	sed s+"-DMESOSCALE"+"-D${scenario} -DMESOSCALE"+ yeah > makegcm_${compilo}
	590	chmod 755 makegcm_${compilo}
	591	\rm yeah
	592	cd ..
[118]	593	fi
	594
[156]	595	################
	596	if [[ "${phys}" == "nophys_" ]]
	597	then
	598	if [[ "${config}" == "les" ]] ### LES is different because of WRFV3
	599	then
	600	sed s+"ARCH_LOCAL = "+"ARCH_LOCAL = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	601	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
	602	else
	603	### not tested yet but should be working
	604	echo CAUTION CAUTION CAUTION NOT FULLY TESTED
	605	sed s+"ARCHFLAGS = "+"ARCHFLAGS = -DNOPHYS "+g configure.wrf > yeah ; mv -f yeah configure.wrf
	606	sed s+"-L../mars_lmd/libo -llmd"+""+g configure.wrf > yeah ; mv -f yeah configure.wrf
	607	fi
	608	fi
	609	################
	610
[11]	611	if [ ${debug} -ne 0 ] # not working for xlf!
	612	then
	613	echo 'DEBUG DEBUG DEBUG DEBUG'
[790]	614	sed s+"# -g"+" -g -no-ftz -traceback -ftrapuv -fp-stack-check -check"+g configure.wrf > yeah
	615	#sed s+"# -g"+"-g -Ktrap=fp -Mbounds"+g configure.wrf > yeah
	616	#sed s+"# -g"+"-g"+g configure.wrf > yeah
[11]	617	mv -f yeah configure.wrf
	618	fi
	619
	620
	621	##################################################
	622	# compile physics
	623	##################################################
	624	if [ ${donotcompilephys} -eq 0 ]
	625	then
	626
	627	cd mars_lmd/
	628
[1212]	629	if [[ "${phys}" == "newphys_" ]]
	630	then
	631	divx=1
	632	divy=1
	633	else
[11]	634	# required size
	635	#----------------
	636	case ${numproc} in
[239]	637	1) divx=1 ; divy=1 ;;
	638	2) divx=1 ; divy=2 ;;
	639	4) divx=2 ; divy=2 ;;
	640	6) divx=2 ; divy=3 ;;
	641	8) divx=2 ; divy=4 ;;
	642	12) divx=3 ; divy=4 ;;
	643	16) divx=4 ; divy=4 ;;
	644	20) divx=4 ; divy=5 ;;
	645	24) divx=4 ; divy=6 ;;
	646	32) divx=4 ; divy=8 ;;
	647	64) divx=8 ; divy=8 ;;
	648	128) divx=8 ; divy=16 ;;
	649	*) echo not yet supported ; exit ;;
[11]	650	esac
[1212]	651	fi
[240]	652	physx=$(expr ${lon} - 1)
	653	restex=$(expr ${physx} \% ${divx})
	654	physy=$(expr ${lat} - 1)
	655	restey=$(expr ${physy} \% ${divy})
[239]	656	if [[ ${restex} != 0 \|\| ${restey} != 0 ]]
	657	then
	658	echo nx-1 shall be divided by ${divx}
	659	echo ny-1 shall be divided by ${divy}
	660	exit
	661	fi
[240]	662	physx=$(expr ${physx} \/ ${divx})
	663	physy=$(expr ${physy} \/ ${divy})
[239]	664	physz=$(expr ${level} - 1)
[11]	665
	666	# change this if you change num_soil_layers in WRF
	667	# -- default is 10
[30]	668	if [[ "${phys}" == "newphys_" ]]
	669	then
[1212]	670	soilsize=18 ## nouvelle physique. ne sert a rien ici. voir comsoil.
[30]	671	else
	672	soilsize=10
	673	fi
[11]	674
	675	# GCM environment variables
	676	#--------------------------
	677	export LMDGCM=$PWD
	678	export LIBOGCM=$PWD/libo
	679
	680	# generate the appropriate dimphys
	681	#---------------------------------
	682	cd libf/phymars
	683	\rm dimphys.h 2> /dev/null
[235]	684	if [[ "${phys}" == "newphys_" ]]
	685	then
[1272]	686	ln -sf ../../meso_dimphys.h_ref . ## ne sert plus !!
	687	else
	688	physize=$(expr ${physx} \* ${physy})
	689	sed s/--xsize--/${physx}/g meso_dimphys.h_ref \| sed s/--ysize--/${physy}/g \| sed s/--physize--/${physize}/g \| sed s/--zsize--/${physz}/g \| sed s/--soilsize--/${soilsize}/g > dimphys.h
	690	head -15 dimphys.h
[235]	691	fi
[42]	692	### TEST new new phys
	693	if [[ "${phys}" == "newphys_" ]]
	694	then
[50]	695	touch gr_fi_dyn.F.lien
[227]	696	ln -sf ../dyn3d/gr_fi_dyn.F . ## dommage, a corriger
[153]	697	###############################
	698	###############################
	699	###############################
[42]	700	fi
	701	###
	702	###
[11]	703	cd ../..
	704
	705	# prepare for nesting
	706	#---------------------
	707	cd libf
	708	duplicate${dom} 2> /dev/null
	709	cd ..
	710
	711	# compile physics
	712	#--------------------------
	713	\rm libf/grid/dimensions.h 2> /dev/null
	714	\rm -rf libo/* 2> /dev/null
	715	echo 1. compiling LMD physics ...
	716	echo compilation info in:
	717	echo $PWD/libo/log_compile_phys
	718
	719	if [ ${debug} -ne 0 ]
	720	then
	721	echo 'DEBUG DEBUG DEBUG DEBUG'
[86]	722	nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
[11]	723	else
[86]	724	nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} testphys1d \| tee libo/log_compile_phys \| grep 'warnings' >> libo/log_compile_phys
[11]	725	fi
	726	echo ... done
	727	# clean the duplicate routines
	728	cd libf
	729	duplicate1 2> /dev/null
	730	cd ..
	731
	732	# merge LMD executables in one lib
	733	#--------------------------------------
	734	cd libo
	735	mkdir temp
	736	#cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp
[1038]	737	cp -f LINUX/.a temp/
[11]	738	cd temp
	739	ar x libbibio.a
	740	ar x libphymars.a
	741	ar x libaeronomars.a
	742	\rm *.a
	743	ar r liblmd.a *
	744	cp -f liblmd.a ..
	745	cd ..
	746	\rm -r temp
	747	nm liblmd.a > liblmd_content
	748	# finish merge
	749	cd ..
	750
[1234]	751	if [[ "${phys}" == "newphys_" ]]
	752	then
	753	# include modules for interfacing
	754	mv *.mod ../inc/
	755	fi
	756
[11]	757	# save a copy
	758	#--------------
[1247]	759	cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra}
[11]	760	echo '****************************************'
	761
	762	# ok
	763	#----
	764	cd ..
	765
	766	# manage nest includes in module_lmd_driver.F
	767	#----
	768	cp call_meso_inifis$dom.inc call_meso_inifis.inc
	769	cp call_meso_physiq$dom.inc call_meso_physiq.inc
	770
	771
	772	fi
	773	##################################################
	774	# END compile physics
	775	##################################################
	776
	777	#------------------
	778	# compile WRF
	779	#------------------
	780	if [ ${justphys} -eq 0 ]
	781	then
	782
	783	echo 2. compiling WRF dynamical core ...
	784
[156]	785	if [[ "${phys}" == "nophys_" ]]
[11]	786	then
[156]	787	echo 'NO LMD PHYSICS included'
	788	else
	789	if [[ ! ( -f "call_meso_physiq.inc" ) ]]
	790	then
	791	echo 'did you compile the physics ? no call_meso_physiq.inc !'
	792	exit
	793	fi
[11]	794	fi
	795
	796	# be sure to compile with the most recent physics
	797	touch phys/module_lmd_driver.F
	798
	799	# talk to user
	800	echo '>>> compiling ... this may be long ... <<<'
	801	echo check progress in:
	802	echo $PWD/log_compile
	803	echo check possible errors in:
	804	echo $PWD/log_error
	805
	806	# compile ...
	807	case ${config} in
[421]	808	'') ./compile em_real > log_compile 2> log_error
[11]	809	# save executables
	810	cd main
[68]	811	if [[ -f real.exe ]]
	812	then
	813	echo 'Looks good ! real.exe is here...'
	814	fi
[11]	815	if [[ -f wrf.exe ]]
	816	then
	817	echo 'Looks good ! wrf.exe is here...'
	818	fi
[1247]	819	cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
	820	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
[11]	821	cd .. ;;
[68]	822	'ideal') #mkdir 'test/em_quarter_ss' 2> /dev/null
[142]	823	echo '>>> YOUR CONFIG IS : '${config}
[421]	824	./compile em_quarter_ss > log_compile 2> log_error
[11]	825	# save executables
	826	cd main
[68]	827	if [[ -f ideal.exe ]]
	828	then
	829	echo 'Looks good ! ideal.exe is here...'
	830	fi
[11]	831	if [[ -f wrf.exe ]]
	832	then
	833	echo 'Looks good ! wrf.exe is here...'
	834	fi
[1247]	835	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
	836	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
[11]	837	cd .. ;;
[142]	838	'les') echo '>>> YOUR CONFIG IS : '${config}
	839	mkdir 'test/em_les' 2> /dev/null
[421]	840	./compile em_les > log_compile 2> log_error
[142]	841	# save executables
	842	cd main
	843	if [[ -f ideal.exe ]]
	844	then
	845	echo 'Looks good ! ideal.exe is here...'
	846	fi
	847	if [[ -f wrf.exe ]]
	848	then
	849	echo 'Looks good ! wrf.exe is here...'
	850	fi
[1247]	851	cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
	852	cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe
[142]	853	cd .. ;;
	854	*) echo not supported... please use ; echo ideal les ; exit ;;
[11]	855	esac
	856	echo '*****last lines from log_error*******'
	857	tail -n 20 log_error
	858	fi
	859
	860	# the end
	861	echo '****************************************'
	862	echo 'done.'
	863	echo '****************************************'
[1247]	864	cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}
[11]	865	mv last ../../
[1247]	866	svn info ../../ > ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.svn.info
[11]	867
	868	# add here specific messages
	869	if [[ "${dom}" != "1" ]]
	870	then
	871	nest=$(expr ${lon} + 4)
	872	echo NB: in namelist.input, please set:
	873	echo '
	874	max_dom = '$dom'
	875	s_we = 1,1,
	876	e_we = '$lon','$nest',
	877	s_sn = 1,1,
	878	e_sn = '$lat','$nest',
	879	s_vert = 1,1,
	880	e_vert = '$level','$level','
	881	fi
	882

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