| 1 | #! /bin/bash |
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| 2 | |
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| 3 | ########################################################## |
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| 4 | laphysiq="mars_lmd" ## default value |
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| 5 | config="" ## default value |
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| 6 | while getopts "p:c:" options; do |
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| 7 | case $options in |
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| 8 | p ) laphysiq="${OPTARG}";; ## choose physics |
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| 9 | c ) config="${OPTARG}";; ## choose config |
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| 10 | esac |
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| 11 | done |
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| 12 | ########################################################## |
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| 13 | echo '*** copying physics: '$laphysiq |
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| 14 | ########################################################## |
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| 15 | |
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| 16 | echo '*** linking sources from ...' |
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| 17 | WRFSRC=$PWD/SRC/ |
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| 18 | if [[ "${config}" == "les" ]] |
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| 19 | then |
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| 20 | WRFSRC=$PWD/SRC/LES/ |
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| 21 | fi |
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| 22 | echo $WRFSRC |
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| 23 | echo '*** to ...' |
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| 24 | HERE=$PWD |
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| 25 | echo $HERE |
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| 26 | |
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| 27 | |
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| 28 | #mkdir WPS |
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| 29 | #cd WPS |
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| 30 | #ln -sf $WRFSRC/WPS/wps_mars . |
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| 31 | #ln -sf $WRFSRC/WPS/switch_WPS_Mars . |
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| 32 | #cd .. |
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| 33 | |
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| 34 | mkdir zeWRFV2 |
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| 35 | #ln -sf $WRFSRC/prepare_ini . |
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| 36 | cd zeWRFV2 |
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| 37 | |
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| 38 | echo '*** start defining folders and links' |
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| 39 | ln -sf $WRFSRC/WRFV2/clean . |
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| 40 | ln -sf $WRFSRC/WRFV2/compile . |
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| 41 | #ln -sf $WRFSRC/WRFV2/makemeso . |
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| 42 | ln -sf $WRFSRC/WRFV2/configure . |
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| 43 | ln -sf $WRFSRC/WRFV2/Makefile . |
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| 44 | #ln -sf $WRFSRC/WRFV2/mars.sed* . |
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| 45 | ln -sf $WRFSRC/WRFV2/*.h . |
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| 46 | ln -sf $WRFSRC/WRFV2/configure.defaults.* . |
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| 47 | ln -sf $WRFSRC/WRFV2/call_meso_inifis?.inc . |
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| 48 | ln -sf $WRFSRC/WRFV2/call_meso_physiq?.inc . |
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| 49 | |
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| 50 | #\rm meso_dimphys.h |
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| 51 | #cp $WRFSRC/WRFV2/meso_dimphys.h . |
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| 52 | #cp $WRFSRC/WRFV2/call_*.inc . |
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| 53 | #cp $WRFSRC/WRFV2/custom*.inc . |
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| 54 | mkdir Registry |
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| 55 | ln -sf $WRFSRC/WRFV2/Registry/* Registry/ |
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| 56 | ### this is to allow one to change Registry somewhere without it being changed everywhere ! |
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| 57 | rm Registry/Registry.EM |
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| 58 | cp $WRFSRC/WRFV2/Registry/Registry.EM Registry/ |
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| 59 | mkdir arch |
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| 60 | ln -sf $WRFSRC/WRFV2/arch/* arch/ |
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| 61 | mkdir dyn_em |
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| 62 | ln -sf $WRFSRC/WRFV2/dyn_em/* dyn_em/ |
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| 63 | mkdir dyn_exp |
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| 64 | ln -sf $WRFSRC/WRFV2/dyn_exp/* dyn_exp/ |
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| 65 | mkdir dyn_nmm |
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| 66 | ln -sf $WRFSRC/WRFV2/dyn_nmm/* dyn_nmm/ |
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| 67 | mkdir frame |
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| 68 | ln -sf $WRFSRC/WRFV2/frame/* frame/ |
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| 69 | mkdir inc |
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| 70 | ln -sf $WRFSRC/WRFV2/inc/* inc/ |
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| 71 | mkdir main |
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| 72 | ln -sf $WRFSRC/WRFV2/main/* main/ |
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| 73 | mkdir phys |
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| 74 | ln -sf $WRFSRC/WRFV2/phys/* phys/ |
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| 75 | echo $laphysiq |
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| 76 | ln -sf $WRFSRC/WRFV2/phys/dynphy_wrf_$laphysiq/* phys/ |
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| 77 | mkdir run |
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| 78 | ln -sf $WRFSRC/WRFV2/run/* run/ |
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| 79 | mkdir share |
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| 80 | ln -sf $WRFSRC/WRFV2/share/* share/ |
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| 81 | mkdir tools |
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| 82 | ln -sf $WRFSRC/WRFV2/tools/* tools/ |
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| 83 | \rm tools/DOMAIN_TIME_TEST |
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| 84 | \rm tools/CodeBase |
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| 85 | mkdir tools/DOMAIN_TIME_TEST |
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| 86 | ln -sf $WRFSRC/WRFV2/tools/DOMAIN_TIME_TEST/* tools/DOMAIN_TIME_TEST/ |
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| 87 | mkdir tools/CodeBase |
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| 88 | ln -sf $WRFSRC/WRFV2/tools/CodeBase/* tools/CodeBase/ |
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| 89 | mkdir external |
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| 90 | ln -sf $WRFSRC/WRFV2/external/Makefile external/ |
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| 91 | mkdir external/io_int |
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| 92 | ln -sf $WRFSRC/WRFV2/external/io_int/* external/io_int/ |
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| 93 | mkdir external/esmf_time_f90 |
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| 94 | ln -sf $WRFSRC/WRFV2/external/esmf_time_f90/* external/esmf_time_f90/ |
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| 95 | mkdir external/io_netcdf |
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| 96 | ln -sf $WRFSRC/WRFV2/external/io_netcdf/* external/io_netcdf/ |
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| 97 | mkdir external/io_grib1 |
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| 98 | ln -sf $WRFSRC/WRFV2/external/io_grib1/* external/io_grib1/ |
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| 99 | \rm external/io_grib1/MEL_grib1 |
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| 100 | \rm external/io_grib1/WGRIB |
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| 101 | \rm external/io_grib1/build |
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| 102 | \rm external/io_grib1/grib1_util |
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| 103 | mkdir external/io_grib1/MEL_grib1 |
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| 104 | ln -sf $WRFSRC/WRFV2/external/io_grib1/MEL_grib1/* external/io_grib1/MEL_grib1/ |
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| 105 | mkdir external/io_grib1/WGRIB |
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| 106 | ln -sf $WRFSRC/WRFV2/external/io_grib1/WGRIB/* external/io_grib1/WGRIB/ |
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| 107 | mkdir external/io_grib1/grib1_util |
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| 108 | ln -sf $WRFSRC/WRFV2/external/io_grib1/grib1_util/* external/io_grib1/grib1_util/ |
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| 109 | mkdir external/io_grib1/build |
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| 110 | mkdir external/io_grib_share |
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| 111 | ln -sf $WRFSRC/WRFV2/external/io_grib_share/* external/io_grib_share/ |
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| 112 | \rm external/io_grib_share/build |
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| 113 | mkdir external/io_grib_share/build |
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| 114 | ln -sf $WRFSRC/WRFV2/external/io_grib_share/build/* external/io_grib_share/build/ |
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| 115 | mkdir external/ioapi_share |
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| 116 | ln -sf $WRFSRC/WRFV2/external/ioapi_share/* external/ioapi_share/ |
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| 117 | mkdir external/io_phdf5 |
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| 118 | ln -sf $WRFSRC/WRFV2/external/io_phdf5/* external/io_phdf5/ |
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| 119 | mkdir external/RSL_LITE |
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| 120 | ln -sf $WRFSRC/WRFV2/external/RSL_LITE/* external/RSL_LITE/ |
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| 121 | mkdir external/io_grib2 |
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| 122 | ln -sf $WRFSRC/WRFV2/external/io_grib2/* external/io_grib2/ |
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| 123 | \rm external/io_grib2/bacio-1.3 |
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| 124 | \rm external/io_grib2/g2lib |
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| 125 | mkdir external/io_grib2/bacio-1.3 |
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| 126 | ln -sf $WRFSRC/WRFV2/external/io_grib2/bacio-1.3/* external/io_grib2/bacio-1.3/ |
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| 127 | mkdir external/io_grib2/g2lib |
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| 128 | ln -sf $WRFSRC/WRFV2/external/io_grib2/g2lib/* external/io_grib2/g2lib/ |
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| 129 | mkdir external/io_pnetcdf |
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| 130 | ln -sf $WRFSRC/WRFV2/external/io_pnetcdf/* external/io_pnetcdf/ |
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| 131 | mkdir external/RSL |
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| 132 | ln -sf $WRFSRC/WRFV2/external/RSL/* external/RSL/ |
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| 133 | \rm external/RSL/RSL |
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| 134 | mkdir external/RSL/RSL |
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| 135 | ln -sf $WRFSRC/WRFV2/external/RSL/RSL/* external/RSL/RSL/ |
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| 136 | mkdir external/io_esmf |
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| 137 | ln -sf $WRFSRC/WRFV2/external/io_esmf/* external/io_esmf/ |
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| 138 | mkdir external/io_mcel |
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| 139 | ln -sf $WRFSRC/WRFV2/external/io_mcel/* external/io_mcel/ |
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| 140 | echo ${laphysiq} |
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| 141 | if [[ "${laphysiq}" == *"void"* ]] |
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| 142 | then |
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| 143 | |
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| 144 | ## case with no physics |
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| 145 | rm -f physics.sed |
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| 146 | touch physics.sed |
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| 147 | |
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| 148 | else |
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| 149 | ## case with physics |
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| 150 | echo $laphysiq |
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| 151 | mkdir $laphysiq |
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| 152 | mkdir $laphysiq/libf |
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| 153 | mkdir $laphysiq/libf/grid |
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| 154 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/grid/* $laphysiq/libf/grid/ |
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| 155 | mkdir $laphysiq/libf/dyn3d |
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| 156 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/dyn3d/* $laphysiq/libf/dyn3d/ |
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| 157 | mkdir $laphysiq/libf/bibio |
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| 158 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/bibio/* $laphysiq/libf/bibio/ |
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| 159 | if [[ "${laphysiq}" == *"mars"* ]] |
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| 160 | then |
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| 161 | ln -sf $WRFSRC/WRFV2/$laphysiq/makegcm* $laphysiq/ |
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| 162 | ln -sf $WRFSRC/WRFV2/$laphysiq/meso_dimphys.h* $laphysiq/ |
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| 163 | ln -sf $WRFSRC/WRFV2/$laphysiq/create_make_gcm $laphysiq/ |
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| 164 | #ln -sf $WRFSRC/WRFV2/$laphysiq/makefile $laphysiq/ |
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| 165 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/duplicate* $laphysiq/libf/ |
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| 166 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/generate* $laphysiq/libf/ |
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| 167 | mkdir $laphysiq/libf/aeronomars |
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| 168 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/aeronomars/* $laphysiq/libf/aeronomars/ |
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| 169 | mkdir $laphysiq/libf/phymars |
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| 170 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/phymars/* $laphysiq/libf/phymars/ |
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| 171 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/phy_common/* $laphysiq/libf/phymars/ |
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| 172 | ### |
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| 173 | \rm $laphysiq/libf/phymars/dimphys.h |
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| 174 | elif [[ "${laphysiq}" == *"venus"* ]] |
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| 175 | then |
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| 176 | ln -sf $WRFSRC/WRFV2/$laphysiq/makelmdz $laphysiq/ |
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| 177 | ln -sf $WRFSRC/WRFV2/$laphysiq/deftank $laphysiq/ |
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| 178 | ln -sf $WRFSRC/WRFV2/$laphysiq/arch* $laphysiq/ |
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| 179 | ln -sf $WRFSRC/WRFV2/$laphysiq/tmp* $laphysiq/ |
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| 180 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf_gcm $laphysiq/ |
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| 181 | ln -sf $WRFSRC/WRFV2/$laphysiq/makefile $laphysiq/ |
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| 182 | ln -sf $WRFSRC/WRFV2/$laphysiq/make_dir $laphysiq/ |
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| 183 | ln -sf $WRFSRC/WRFV2/$laphysiq/create_make_gcm $laphysiq/ |
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| 184 | ln -sf $WRFSRC/WRFV2/$laphysiq/Tools $laphysiq/ |
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| 185 | mkdir $laphysiq/ioipsl |
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| 186 | ln -sf $WRFSRC/WRFV2/$laphysiq/ioipsl/modipsl/lib/* $laphysiq/ioipsl/ |
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| 187 | mkdir $laphysiq/libf/phyvenus |
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| 188 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/phyvenus/* $laphysiq/libf/phyvenus/ |
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| 189 | mkdir $laphysiq/libf/phy_common |
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| 190 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/phy_common/* $laphysiq/libf/phy_common/ |
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| 191 | mkdir $laphysiq/libf/misc |
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| 192 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/misc/* $laphysiq/libf/misc/ |
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| 193 | mkdir $laphysiq/libf/filtrez |
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| 194 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/filtrez/* $laphysiq/libf/filtrez/ |
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| 195 | elif [[ "${laphysiq}" == *"generic"* ]] |
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| 196 | then |
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| 197 | ln -sf $WRFSRC/WRFV2/$laphysiq/arch* $laphysiq/ |
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| 198 | ln -sf $WRFSRC/WRFV2/$laphysiq/build_gcm $laphysiq/ |
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| 199 | ln -sf $WRFSRC/WRFV2/$laphysiq/makelmdz* $laphysiq/ |
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| 200 | ln -sf $WRFSRC/WRFV2/$laphysiq/makegcm* $laphysiq/ |
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| 201 | ln -sf $WRFSRC/WRFV2/$laphysiq/create_make_gcm $laphysiq/ |
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| 202 | mkdir $laphysiq/libf/phystd |
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| 203 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/phystd/* $laphysiq/libf/phystd/ |
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| 204 | cp -r $WRFSRC/WRFV2/$laphysiq/libf/phystd/bands $laphysiq/libf/phystd/ |
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| 205 | cp -r $WRFSRC/WRFV2/$laphysiq/libf/phystd/scatterers $laphysiq/libf/phystd/ |
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| 206 | mkdir $laphysiq/libf/phy_common |
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| 207 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/phy_common/* $laphysiq/libf/phy_common/ |
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| 208 | mkdir $laphysiq/libf/misc |
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| 209 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/misc/* $laphysiq/libf/misc/ |
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| 210 | mkdir $laphysiq/libf/filtrez |
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| 211 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/filtrez/* $laphysiq/libf/filtrez/ |
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| 212 | elif [[ "${laphysiq}" == *"titan"* ]] |
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| 213 | then |
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| 214 | ln -sf $WRFSRC/WRFV2/$laphysiq/arch* $laphysiq/ |
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| 215 | ln -sf $WRFSRC/WRFV2/$laphysiq/build_gcm $laphysiq/ |
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| 216 | ln -sf $WRFSRC/WRFV2/$laphysiq/makelmdz* $laphysiq/ |
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| 217 | ln -sf $WRFSRC/WRFV2/$laphysiq/create_make_gcm $laphysiq/ |
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| 218 | mkdir $laphysiq/libf/phytitan |
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| 219 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/phytitan/* $laphysiq/libf/phytitan/ |
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| 220 | cp -r $WRFSRC/WRFV2/$laphysiq/libf/phytitan/bands $laphysiq/libf/phytitan/ |
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| 221 | cp -r $WRFSRC/WRFV2/$laphysiq/libf/phytitan/scatterers $laphysiq/libf/phytitan/ |
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| 222 | mkdir $laphysiq/libf/chimtitan |
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| 223 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/chimtitan/* $laphysiq/libf/chimtitan/ |
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| 224 | mkdir $laphysiq/libf/muphytitan |
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| 225 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/muphytitan/* $laphysiq/libf/muphytitan/ |
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| 226 | mkdir $laphysiq/libf/phy_common |
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| 227 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/phy_common/* $laphysiq/libf/phy_common/ |
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| 228 | mkdir $laphysiq/libf/misc |
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| 229 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/misc/* $laphysiq/libf/misc/ |
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| 230 | mkdir $laphysiq/libf/filtrez |
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| 231 | ln -sf $WRFSRC/WRFV2/$laphysiq/libf/filtrez/* $laphysiq/libf/filtrez/ |
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| 232 | fi |
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| 233 | mkdir $laphysiq/libo |
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| 234 | #touch $laphysiq/makefile |
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| 235 | |
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| 236 | sed s+"YORGLYORGL"+"$laphysiq"+g $WRFSRC/WRFV2/physics.sed > physics.sed |
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| 237 | fi |
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| 238 | |
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| 239 | mkdir test |
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| 240 | mkdir test/em_real |
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| 241 | mkdir test/em_quarter_ss |
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| 242 | ln -sf $WRFSRC/WRFV2/test/em_real/* test/em_real/ |
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| 243 | |
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| 244 | echo '*** end' |
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| 245 | |
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| 246 | |
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| 247 | |
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| 248 | |
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