| 1 | #! /bin/bash |
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| 2 | |
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| 3 | |
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| 4 | ################################## |
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| 5 | # makemeso allows you to compile # |
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| 6 | # WRF with modified LMD physics # |
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| 7 | ################################## |
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| 8 | |
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| 9 | ############################## |
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| 10 | # Author: A. Spiga # |
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| 11 | # New version : October 2008 # |
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| 12 | # Last update : January 2009 # |
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| 13 | ############################## |
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| 14 | |
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| 15 | ############################# |
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| 16 | # Use: |
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| 17 | # |
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| 18 | # makemeso ## basic use (real configuration) |
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| 19 | # |
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| 20 | # makemeso -d ## no compilation, just check the name of the compile folder |
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| 21 | # |
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| 22 | # makemeso -c real ## real-case mode [default] |
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| 23 | # makemeso -c convection ## idealized mode: convective cell |
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| 24 | # |
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| 25 | # makemeso < last ## basic use + skip questions [! script must have been executed at least once] |
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| 26 | # makemeso -r < last ## basic use + skip questions + only known config |
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| 27 | # makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile |
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| 28 | # |
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| 29 | # makemeso -j ## just compile the LMD physics |
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| 30 | # |
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| 31 | # makemeso -g ## debug mode |
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| 32 | # |
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| 33 | # makemeso -h ## display options |
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| 34 | # |
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| 35 | ############################# |
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| 36 | |
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| 37 | |
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| 38 | # todo: netcdf support |
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| 39 | |
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| 40 | |
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| 41 | ############################################################################################## |
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| 42 | ############################################################################################## |
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| 43 | ############################################################################################## |
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| 44 | ############################################################################################## |
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| 45 | |
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| 46 | donotcompile=0 |
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| 47 | donotallow=0 |
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| 48 | config='real' |
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| 49 | donotcompilephys=0 |
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| 50 | justphys=0 |
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| 51 | debug=0 |
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| 52 | while getopts "drc:njhg" options; do |
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| 53 | case $options in |
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| 54 | d ) donotcompile=1;; ## just to check the compile folder |
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| 55 | r ) donotallow=1;; ## allow only known config (useful with 'makemeso < last') |
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| 56 | c ) config="${OPTARG}";; ## idealized cases |
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| 57 | n ) donotcompilephys=1;; ## do not recompile physics |
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| 58 | j ) justphys=1;; ## just compile LMD physics |
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| 59 | g ) debug=1;; ## debug mode |
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| 60 | h ) echo " |
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| 61 | # Use: |
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| 62 | # |
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| 63 | # makemeso ## basic use (real configuration) |
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| 64 | # |
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| 65 | # makemeso -d ## no compilation, just check the name of the compile folder |
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| 66 | # |
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| 67 | # makemeso -c real ## real-case mode [default] |
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| 68 | # makemeso -c convection ## idealized mode: convective cell |
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| 69 | # |
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| 70 | # makemeso < last ## basic use + skip questions [! script must have been executed at least once] |
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| 71 | # makemeso -r < last ## basic use + skip questions + only known config |
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| 72 | # makemeso -nr < last ## basic use + skip questions + only known config + no LMD phys recompile |
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| 73 | # |
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| 74 | # makemeso -j ## just compile the LMD physics |
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| 75 | # |
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| 76 | # makemeso -g ## debug mode |
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| 77 | # |
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| 78 | # makemeso -h ## display options |
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| 79 | " ; exit ;; |
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| 80 | esac |
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| 81 | done |
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| 82 | |
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| 83 | #-------------- |
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| 84 | # talk w/ user |
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| 85 | #-------------- |
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| 86 | echo '****************************************' |
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| 87 | echo 'Welcome.' |
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| 88 | echo '****************************************' |
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| 89 | # computer |
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| 90 | uname -a | grep x86_64 > /dev/null |
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| 91 | if [[ "$?" == 0 ]] |
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| 92 | then |
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| 93 | machine='64' |
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| 94 | else |
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| 95 | machine='32' |
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| 96 | fi |
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| 97 | # compilator |
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| 98 | echo '>>>' supported compiler options are 1. pgf90, 2. g95, 3. mpi+pgf90 - your choice ? ; read reply |
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| 99 | case ${reply} in |
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| 100 | 1) compilo='pgf' ; numproc=1 ;; |
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| 101 | 2) compilo='g95' ; numproc=1 ;; |
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| 102 | 3) compilo='mpi' |
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| 103 | if [[ "${WHERE_MPI}" = "" ]] |
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| 104 | then |
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| 105 | echo Please initialize the variable WHERE_MPI in your environnement |
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| 106 | exit |
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| 107 | fi |
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| 108 | echo '>>>' how many processors ? 1, 2, 4, 6, 8, 12, 16 ; read numproc ;; |
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| 109 | *) echo not supported by this script ; exit ;; |
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| 110 | esac |
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| 111 | # dimensions |
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| 112 | if [ ${donotcompile} -eq 0 ] |
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| 113 | then |
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| 114 | echo '>>>' grid points in longitude ? ; read lon |
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| 115 | echo '>>>' grid points in latitude ? ; read lat |
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| 116 | echo '>>>' number of vertical levels ? ; read level |
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| 117 | fi |
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| 118 | echo '>>>' number of domains ? ; read dom |
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| 119 | |
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| 120 | ###PB lecture dom si < last |
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| 121 | |
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| 122 | case ${dom} in |
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| 123 | 1) single='_single' ;; |
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| 124 | *) single='_nest' ;; |
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| 125 | esac |
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| 126 | if [[ "${compilo}" = "mpi" ]] |
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| 127 | then |
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| 128 | single='' |
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| 129 | fi |
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| 130 | testflag='' |
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| 131 | #### |
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| 132 | #testflag='_test' |
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| 133 | #### |
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| 134 | conf_wrf="${compilo}_${machine}${single}${testflag}" |
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| 135 | \rm what_folder 2> /dev/null |
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| 136 | echo ${conf_wrf} > what_folder |
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| 137 | if [ ${donotcompile} -eq 1 ] |
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| 138 | then |
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| 139 | #\rm what_folder 2> /dev/null |
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| 140 | #echo '**********************' |
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| 141 | #echo '*** Your folder is ...' |
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| 142 | #echo '**********************' |
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| 143 | #echo ${conf_wrf} | tee what_folder |
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| 144 | #cat what_folder |
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| 145 | #echo ${conf_wrf} > what_folder |
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| 146 | #echo ${reply} > what_compilo |
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| 147 | #echo ${numproc} > what_numproc |
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| 148 | exit |
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| 149 | fi |
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| 150 | echo '>>>' number of tracers ? ; read tra |
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| 151 | if [ ${tra} -eq 0 ] |
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| 152 | then |
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| 153 | tra=1 |
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| 154 | fi |
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| 155 | # folder |
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| 156 | mkdir ${conf_wrf} 2> /dev/null |
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| 157 | if [[ "$?" == 0 ]] |
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| 158 | then |
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| 159 | echo new folder ... link sources |
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| 160 | ./copy_model |
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| 161 | mv WRFV2 ${conf_wrf}/ |
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| 162 | cd ${conf_wrf}/WRFV2 |
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| 163 | cd Registry ; Registry.bash ; cd .. |
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| 164 | else |
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| 165 | cd ${conf_wrf}/WRFV2 |
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| 166 | echo '>>>' did you modify anything in the Registry or clean ? y for yes, any key for no ; read answer |
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| 167 | case ${answer} in |
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| 168 | y) cd Registry ; mv Registry Registry.bak ; Registry.bash ; cd .. ;; |
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| 169 | *) answer='no' ;; |
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| 170 | esac |
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| 171 | fi |
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| 172 | # summary |
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| 173 | echo '**********************' |
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| 174 | echo '*** Your folder is ...' |
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| 175 | echo '**********************' |
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| 176 | echo ${conf_wrf} |
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| 177 | echo '**********************' |
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| 178 | echo '****************************************' |
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| 179 | echo so ... |
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| 180 | echo your computer is ${machine} bits |
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| 181 | echo ${compilo} is your compiler |
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| 182 | if [[ "${compilo}" = "mpi" ]] |
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| 183 | then |
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| 184 | echo MPICH is in ${WHERE_MPI} |
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| 185 | fi |
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| 186 | echo you will use ${numproc} processors |
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| 187 | echo you have ${lon} x points |
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| 188 | echo ' '${lat} y points |
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| 189 | echo ' '${level} z points |
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| 190 | echo ' '${dom} domains |
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| 191 | echo ' '${tra} tracers |
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| 192 | echo '****************************************' |
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| 193 | # save answer |
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| 194 | \rm last 2> /dev/null |
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| 195 | touch last |
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| 196 | echo ${reply} >> last |
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| 197 | if [[ "${compilo}" = "mpi" ]] |
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| 198 | then |
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| 199 | echo ${numproc} >> last |
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| 200 | fi |
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| 201 | echo ${lon} >> last |
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| 202 | echo ${lat} >> last |
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| 203 | echo ${level} >> last |
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| 204 | echo ${dom} >> last |
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| 205 | echo ${tra} >> last |
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| 206 | echo ${answer} >> last |
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| 207 | |
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| 208 | |
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| 209 | #------------ |
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| 210 | # log files |
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| 211 | #------------ |
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| 212 | \rm log_compile 2> /dev/null |
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| 213 | \rm log_error 2> /dev/null |
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| 214 | |
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| 215 | #----------------- |
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| 216 | # configure WRF |
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| 217 | #----------------- |
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| 218 | mv configure.wrf configure.wrf.bak 2> /dev/null |
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| 219 | ######################## |
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| 220 | case ${conf_wrf} in |
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| 221 | # PGF90, 32 bits, no nesting |
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| 222 | pgf_32_single) echo 1 | configure > log_compile 2> log_error ;; |
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| 223 | # PGF90, 32 bits, nesting |
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| 224 | pgf_32_nest) echo 2 | configure > log_compile 2> log_error ;; |
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| 225 | # PGF90, 64 bits, no nesting |
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| 226 | pgf_64_single) echo 1 | configure > log_compile 2> log_error ;; |
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| 227 | # PGF90, 64 bits, nesting |
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| 228 | pgf_64_nest) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd .. |
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| 229 | echo 4 | configure > log_compile 2> log_error ;; |
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| 230 | # G95, 32 bits, no nesting |
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| 231 | g95_32_single) echo 13 | configure > log_compile 2> log_error ;; |
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| 232 | # MPICH, 64 bits, no nesting / nesting |
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| 233 | mpi_64) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd .. |
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| 234 | echo 3 | configure > log_compile 2> log_error |
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| 235 | sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf | sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g | sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah |
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| 236 | #| sed s+"fastsse"+"fast"+g > yeah |
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| 237 | mv -f yeah configure.wrf ;; |
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| 238 | # MPICH, 64 bits, OK with periodic BC but no positive definite |
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| 239 | mpi_64_test) cd arch ; ln -sf ../configure.defaults.fix64nest configure.defaults ; cd .. |
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| 240 | echo 2 | configure > log_compile 2> log_error |
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| 241 | sed s+"mpif90"+"${WHERE_MPI}/mpif90"+g configure.wrf | sed s+"mpicc"+"${WHERE_MPI}/mpicc"+g | sed s+"mpicc"+"mpicc -DMPI2_SUPPORT"+g > yeah |
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| 242 | mv -f yeah configure.wrf ;; |
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| 243 | # ANYTHING ELSE |
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| 244 | *) echo NO PRESETS ... |
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| 245 | if [ ${donotallow} -eq 0 ] |
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| 246 | then |
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| 247 | configure |
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| 248 | else |
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| 249 | # problem when an input file is used |
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| 250 | echo 'please cd to '$PWD' and type ./configure' |
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| 251 | exit |
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| 252 | fi ;; |
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| 253 | esac |
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| 254 | ######################## |
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| 255 | sed -f mars.sed configure.wrf > yeah |
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| 256 | mv -f yeah configure.wrf |
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| 257 | |
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| 258 | if [ ${debug} -ne 0 ] |
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| 259 | then |
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| 260 | echo 'DEBUG DEBUG DEBUG DEBUG' |
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| 261 | sed s+"#-g"+"-g"+g configure.wrf > yeah |
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| 262 | mv -f yeah configure.wrf |
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| 263 | fi |
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| 264 | |
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| 265 | ################################################## |
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| 266 | # compile physics |
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| 267 | ################################################## |
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| 268 | if [ ${donotcompilephys} -eq 0 ] |
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| 269 | then |
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| 270 | |
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| 271 | cd mars_lmd/ |
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| 272 | |
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| 273 | # required size |
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| 274 | #---------------- |
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| 275 | case ${numproc} in |
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| 276 | 1) physx=$(expr ${lon} - 1) |
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| 277 | physy=$(expr ${lat} - 1) |
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| 278 | physz=$(expr ${level} - 1) ;; |
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| 279 | 2) physx=$(expr ${lon} - 1) |
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| 280 | physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 2) |
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| 281 | physz=$(expr ${level} - 1) ;; |
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| 282 | 4) physx=$(expr ${lon} - 1) ; physx=$(expr ${physx} \/ 2) |
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| 283 | physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 2) |
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| 284 | physz=$(expr ${level} - 1) ;; |
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| 285 | 6) physx=$(expr ${lon} - 1) ; physx=$(expr ${physx} \/ 2) |
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| 286 | physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 3) |
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| 287 | physz=$(expr ${level} - 1) ;; |
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| 288 | 8) physx=$(expr ${lon} - 1) ; physx=$(expr ${physx} \/ 2) |
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| 289 | physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 4) |
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| 290 | physz=$(expr ${level} - 1) ;; |
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| 291 | 12) physx=$(expr ${lon} - 1) ; physx=$(expr ${physx} \/ 3) |
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| 292 | physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 4) |
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| 293 | physz=$(expr ${level} - 1) ;; |
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| 294 | 16) physx=$(expr ${lon} - 1) ; physx=$(expr ${physx} \/ 4) |
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| 295 | physy=$(expr ${lat} - 1) ; physy=$(expr ${physy} \/ 4) |
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| 296 | physz=$(expr ${level} - 1) ;; |
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| 297 | *) echo not supported ; exit |
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| 298 | esac |
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| 299 | |
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| 300 | # change this if you change num_soil_layers in WRF |
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| 301 | # -- default is 10 |
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| 302 | soilsize=10 |
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| 303 | |
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| 304 | # GCM environment variables |
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| 305 | #-------------------------- |
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| 306 | export LMDGCM=$PWD |
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| 307 | export LIBOGCM=$PWD/libo |
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| 308 | |
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| 309 | # generate the appropriate dimphys |
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| 310 | #--------------------------------- |
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| 311 | cd libf/phymars |
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| 312 | \rm dimphys.h 2> /dev/null |
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| 313 | physize=$(expr ${physx} \* ${physy}) |
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| 314 | sed s/--xsize--/${physx}/g meso_dimphys.h_ref | sed s/--ysize--/${physy}/g | sed s/--physize--/${physize}/g | sed s/--zsize--/${physz}/g | sed s/--soilsize--/${soilsize}/g > dimphys.h |
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| 315 | #head -15 dimphys.h |
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| 316 | cd ../.. |
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| 317 | |
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| 318 | # prepare for nesting |
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| 319 | #--------------------- |
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| 320 | cd libf |
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| 321 | duplicate${dom} 2> /dev/null |
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| 322 | cd .. |
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| 323 | |
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| 324 | # compile physics |
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| 325 | #-------------------------- |
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| 326 | \rm libf/grid/dimensions.h 2> /dev/null |
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| 327 | \rm -rf libo/* 2> /dev/null |
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| 328 | echo 1. compiling LMD physics ... |
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| 329 | echo compilation info in: |
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| 330 | echo $PWD/libo/log_compile_phys |
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| 331 | if [ ${debug} -ne 0 ] |
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| 332 | then |
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| 333 | echo 'DEBUG DEBUG DEBUG DEBUG' |
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| 334 | nohup makegcm_${compilo} -debug -t ${tra} -p mars -d ${physz} meso_testphys1d | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys |
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| 335 | else |
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| 336 | nohup makegcm_${compilo} -t ${tra} -p mars -d ${physz} meso_testphys1d | tee libo/log_compile_phys | grep 'warnings' >> libo/log_compile_phys |
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| 337 | fi |
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| 338 | echo ... done |
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| 339 | # clean the duplicate routines |
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| 340 | cd libf |
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| 341 | duplicate1 2> /dev/null |
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| 342 | cd .. |
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| 343 | |
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| 344 | # merge LMD executables in one lib |
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| 345 | #-------------------------------------- |
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| 346 | cd libo |
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| 347 | mkdir temp |
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| 348 | #cp -f LINUXfastI._${physz}_t${tra}_reg/*.a temp |
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| 349 | cp -f LINUX*/*.a temp |
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| 350 | cd temp |
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| 351 | ar x libbibio.a |
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| 352 | ar x libphymars.a |
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| 353 | ar x libaeronomars.a |
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| 354 | \rm *.a |
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| 355 | ar r liblmd.a * |
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| 356 | cp -f liblmd.a .. |
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| 357 | cd .. |
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| 358 | \rm -r temp |
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| 359 | nm liblmd.a > liblmd_content |
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| 360 | # finish merge |
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| 361 | cd .. |
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| 362 | |
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| 363 | # save a copy |
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| 364 | #-------------- |
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| 365 | cp -f libo/liblmd.a libo/liblmd.a_${lon}_${lat}_${level}_${dom}_${tra} |
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| 366 | echo '****************************************' |
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| 367 | |
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| 368 | # ok |
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| 369 | #---- |
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| 370 | cd .. |
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| 371 | |
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| 372 | # manage nest includes in module_lmd_driver.F |
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| 373 | #---- |
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| 374 | cp call_meso_inifis$dom.inc call_meso_inifis.inc |
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| 375 | cp call_meso_physiq$dom.inc call_meso_physiq.inc |
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| 376 | |
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| 377 | |
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| 378 | fi |
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| 379 | ################################################## |
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| 380 | # END compile physics |
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| 381 | ################################################## |
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| 382 | |
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| 383 | #------------------ |
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| 384 | # compile WRF |
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| 385 | #------------------ |
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| 386 | if [ ${justphys} -eq 0 ] |
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| 387 | then |
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| 388 | |
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| 389 | echo 2. compiling WRF dynamical core ... |
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| 390 | |
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| 391 | if [[ ! ( -f "call_meso_physiq.inc" ) ]] |
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| 392 | then |
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| 393 | echo 'did you compile the physics ? no call_meso_physiq.inc !' |
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| 394 | exit |
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| 395 | fi |
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| 396 | |
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| 397 | # be sure to compile with the most recent physics |
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| 398 | touch phys/module_lmd_driver.F |
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| 399 | |
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| 400 | # talk to user |
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| 401 | echo '>>> YOUR CONFIG IS : '${config} |
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| 402 | echo '>>> compiling ... this may be long ... <<<' |
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| 403 | echo check progress in: |
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| 404 | echo $PWD/log_compile |
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| 405 | echo check possible errors in: |
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| 406 | echo $PWD/log_error |
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| 407 | |
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| 408 | # compile ... |
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| 409 | case ${config} in |
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| 410 | 'real') compile em_real > log_compile 2> log_error |
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| 411 | # save executables |
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| 412 | cd main |
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| 413 | if [[ -f wrf.exe ]] |
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| 414 | then |
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| 415 | echo 'Looks good ! wrf.exe is here...' |
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| 416 | fi |
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| 417 | cp -f real.exe ../../real_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe |
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| 418 | cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe |
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| 419 | cd .. ;; |
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| 420 | 'convection') #mkdir 'test/em_quarter_ss' 2> /dev/null |
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| 421 | compile em_quarter_ss > log_compile 2> log_error |
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| 422 | # save executables |
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| 423 | cd main |
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| 424 | if [[ -f wrf.exe ]] |
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| 425 | then |
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| 426 | echo 'Looks good ! wrf.exe is here...' |
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| 427 | fi |
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| 428 | cp -f ideal.exe ../../ideal_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe |
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| 429 | cp -f wrf.exe ../../wrf_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc}.exe |
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| 430 | cd .. ;; |
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| 431 | *) echo not supported please use ; echo real convection ; exit ;; |
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| 432 | esac |
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| 433 | echo '*******last lines from log_error*********' |
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| 434 | tail -n 20 log_error |
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| 435 | fi |
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| 436 | |
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| 437 | # the end |
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| 438 | echo '****************************************' |
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| 439 | echo 'done.' |
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| 440 | echo '****************************************' |
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| 441 | cp last ../makemeso_x${lon}_y${lat}_z${level}_d${dom}_t${tra}_p${numproc} |
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| 442 | mv last ../../ |
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| 443 | |
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| 444 | # add here specific messages |
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| 445 | if [[ "${dom}" != "1" ]] |
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| 446 | then |
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| 447 | nest=$(expr ${lon} + 4) |
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| 448 | echo NB: in namelist.input, please set: |
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| 449 | echo ' |
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| 450 | max_dom = '$dom' |
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| 451 | s_we = 1,1, |
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| 452 | e_we = '$lon','$nest', |
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| 453 | s_sn = 1,1, |
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| 454 | e_sn = '$lat','$nest', |
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| 455 | s_vert = 1,1, |
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| 456 | e_vert = '$level','$level',' |
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| 457 | fi |
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| 458 | |
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