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physiq_mod.F90 @ 2097

Last change on this file since 2097 was 2097, checked in by jvatant, 6 years ago

+ Fix some ambiguities about effective gravity field. Choice is made to keep coherence between dynamics and physics by default,

but having correct altitudes for chemistry - to have correct fluxes - no matter what's in physics.
Then chemistry is "recast" on the dynphy grid.

+ Also correct the fact that chemistry requires altitutde with ref to the geoid not to the local surface -> pphi+phhis in the calculation.
+ Both points above lead to new zlay_eff/zlev_eff altitudes variables in physiq_mod sent to chemistry.

We still need to think about it for microphysics.

--JVO

Property svn:executable set to *
Property svn:mergeinfo set to
/trunk/LMDZ.GENERIC/libf/phystd/physiq_mod.F90 merged eligible

File size: 71.0 KB

Line
1	module physiq_mod
2
3	implicit none
4
5	contains
6
7	subroutine physiq(ngrid,nlayer,nq, &
8	nametrac, &
9	firstcall,lastcall, &
10	pday,ptime,ptimestep, &
11	pplev,pplay,pphi, &
12	pu,pv,pt,pq, &
13	flxw, &
14	pdu,pdv,pdt,pdq,pdpsrf)
15
16	use radinc_h, only : L_NSPECTI,L_NSPECTV
17	use radcommon_h, only: sigma, gzlat, gzlat_ig, Cmk, grav, BWNV
18	use surfdat_h, only: phisfi, zmea, zstd, zsig, zgam, zthe
19	use comchem_h, only: nkim, cnames, nlaykim_up, ykim_up, ykim_tot, botCH4
20	use comdiurn_h, only: coslat, sinlat, coslon, sinlon
21	use comsaison_h, only: mu0, fract, dist_star, declin, right_ascen
22	use comsoil_h, only: nsoilmx, layer, mlayer, inertiedat
23	use datafile_mod, only: datadir, corrkdir, banddir
24	use geometry_mod, only: latitude, longitude, cell_area
25	USE comgeomfi_h, only: totarea, totarea_planet
26	USE tracer_h
27	use time_phylmdz_mod, only: ecritphy, iphysiq, nday
28	use phyetat0_mod, only: phyetat0
29	use phyredem, only: physdem0, physdem1
30	use planetwide_mod, only: planetwide_minval,planetwide_maxval,planetwide_sumval
31	use mod_phys_lmdz_para, only : is_master
32	use planete_mod, only: apoastr, periastr, year_day, peri_day, &
33	obliquit, nres, z0
34	use comcstfi_mod, only: pi, g, rcp, r, rad, mugaz, cpp
35	use time_phylmdz_mod, only: daysec
36	use logic_mod, only: moyzon_ch
37	use moyzon_mod, only: zphibar, zphisbar, zplevbar, zplaybar, &
38	zzlevbar, zzlaybar, ztfibar, zqfibar
39	use callkeys_mod
40	use vertical_layers_mod, only: presnivs, pseudoalt
41	use ioipsl_getin_p_mod, only: getin_p
42	use mod_phys_lmdz_omp_data, ONLY: is_omp_master
43	#ifdef CPP_XIOS
44	use xios_output_mod, only: initialize_xios_output, &
45	update_xios_timestep, &
46	send_xios_field
47	use wxios, only: wxios_context_init, xios_context_finalize
48	#endif
49	use MMP_OPTICS
50	use muphy_diag
51	implicit none
52
53
54	!==================================================================
55	!
56	! Purpose
57	! -------
58	! Central subroutine for all the physics parameterisations in the
59	! universal model. Originally adapted from the Mars LMDZ model.
60	!
61	! The model can be run without or with tracer transport
62	! depending on the value of "tracer" in file "callphys.def".
63	!
64	!
65	! It includes:
66	!
67	! I. Initialization :
68	! I.1 Firstcall initializations.
69	! I.2 Initialization for every call to physiq.
70	!
71	! II. Compute radiative transfer tendencies (longwave and shortwave) :
72	! II.a Option 1 : Call correlated-k radiative transfer scheme.
73	! II.b Option 2 : Call Newtonian cooling scheme.
74	! II.c Option 3 : Atmosphere has no radiative effect.
75	!
76	! III. Vertical diffusion (turbulent mixing) :
77	!
78	! IV. Dry Convective adjustment :
79	!
80	! V. Tracers
81	! V.1. Microphysics
82	! V.2. Chemistry
83	! V.3. Updates (pressure variations, surface budget).
84	! V.4. Surface Tracer Update.
85	!
86	! VI. Surface and sub-surface soil temperature.
87	!
88	! VII. Perform diagnostics and write output files.
89	!
90	!
91	! arguments
92	! ---------
93	!
94	! INPUT
95	! -----
96	!
97	! ngrid Size of the horizontal grid.
98	! nlayer Number of vertical layers.
99	! nq Number of advected fields.
100	! nametrac Name of corresponding advected fields.
101	!
102	! firstcall True at the first call.
103	! lastcall True at the last call.
104	!
105	! pday Number of days counted from the North. Spring equinoxe.
106	! ptime Universal time (0<ptime<1): ptime=0.5 at 12:00 UT.
107	! ptimestep timestep (s).
108	!
109	! pplay(ngrid,nlayer) Pressure at the middle of the layers (Pa).
110	! pplev(ngrid,nlayer+1) Intermediate pressure levels (Pa).
111	! pphi(ngrid,nlayer) Geopotential at the middle of the layers (m2.s-2).
112	!
113	! pu(ngrid,nlayer) u, zonal component of the wind (ms-1).
114	! pv(ngrid,nlayer) v, meridional component of the wind (ms-1).
115	!
116	! pt(ngrid,nlayer) Temperature (K).
117	!
118	! pq(ngrid,nlayer,nq) Advected fields.
119	!
120	! pudyn(ngrid,nlayer) \
121	! pvdyn(ngrid,nlayer) \ Dynamical temporal derivative for the
122	! ptdyn(ngrid,nlayer) / corresponding variables.
123	! pqdyn(ngrid,nlayer,nq) /
124	! flxw(ngrid,nlayer) vertical mass flux (kg/s) at layer lower boundary
125	!
126	! OUTPUT
127	! ------
128	!
129	! pdu(ngrid,nlayer) \
130	! pdv(ngrid,nlayer) \ Temporal derivative of the corresponding
131	! pdt(ngrid,nlayer) / variables due to physical processes.
132	! pdq(ngrid,nlayer) /
133	! pdpsrf(ngrid) /
134	!
135	!
136	! Authors
137	! -------
138	! Frederic Hourdin 15/10/93
139	! Francois Forget 1994
140	! Christophe Hourdin 02/1997
141	! Subroutine completely rewritten by F. Forget (01/2000)
142	! Water ice clouds: Franck Montmessin (update 06/2003)
143	! Radiatively active tracers: J.-B. Madeleine (10/2008-06/2009)
144	! New correlated-k radiative scheme: R. Wordsworth (2009)
145	! Many specifically Martian subroutines removed: R. Wordsworth (2009)
146	! Improved water cycle: R. Wordsworth / B. Charnay (2010)
147	! To F90: R. Wordsworth (2010)
148	! New turbulent diffusion scheme: J. Leconte (2012)
149	! Loops converted to F90 matrix format: J. Leconte (2012)
150	! No more ngridmx/nqmx, F90 commons and adaptation to parallel: A. Spiga (2012)
151	! Purge of the code : M. Turbet (2015)
152	! Fork for Titan : J. Vatant d'Ollone (2017)
153	! + clean of all too-generic (ocean, water, co2 ...) routines
154	! + Titan's chemistry
155	! Microphysical moment model - J.Burgalat / J.Vatant d'Ollone (2017-2018)
156	!============================================================================================
157
158
159	! 0. Declarations :
160	! ------------------
161
162	include "netcdf.inc"
163
164	! Arguments :
165	! -----------
166
167	! INPUTS:
168	! -------
169
170
171	integer,intent(in) :: ngrid ! Number of atmospheric columns.
172	integer,intent(in) :: nlayer ! Number of atmospheric layers.
173	integer,intent(in) :: nq ! Number of tracers.
174	character*30,intent(in) :: nametrac(nq) ! Names of the tracers taken from dynamics.
175
176	logical,intent(in) :: firstcall ! Signals first call to physics.
177	logical,intent(in) :: lastcall ! Signals last call to physics.
178
179	real,intent(in) :: pday ! Number of elapsed sols since reference Ls=0.
180	real,intent(in) :: ptime ! "Universal time", given as fraction of sol (e.g.: 0.5 for noon).
181	real,intent(in) :: ptimestep ! Physics timestep (s).
182	real,intent(in) :: pplev(ngrid,nlayer+1) ! Inter-layer pressure (Pa).
183	real,intent(in) :: pplay(ngrid,nlayer) ! Mid-layer pressure (Pa).
184	real,intent(in) :: pphi(ngrid,nlayer) ! Geopotential at mid-layer (m2s-2).
185	real,intent(in) :: pu(ngrid,nlayer) ! Zonal wind component (m/s).
186	real,intent(in) :: pv(ngrid,nlayer) ! Meridional wind component (m/s).
187	real,intent(in) :: pt(ngrid,nlayer) ! Temperature (K).
188	real,intent(in) :: pq(ngrid,nlayer,nq) ! Tracers (kg/kg_of_air).
189	real,intent(in) :: flxw(ngrid,nlayer) ! Vertical mass flux (ks/s) at lower boundary of layer
190
191	! OUTPUTS:
192	! --------
193
194	! Physical tendencies :
195
196	real,intent(out) :: pdu(ngrid,nlayer) ! Zonal wind tendencies (m/s/s).
197	real,intent(out) :: pdv(ngrid,nlayer) ! Meridional wind tendencies (m/s/s).
198	real,intent(out) :: pdt(ngrid,nlayer) ! Temperature tendencies (K/s).
199	real,intent(out) :: pdq(ngrid,nlayer,nq) ! Tracer tendencies (kg/kg_of_air/s).
200	real,intent(out) :: pdpsrf(ngrid) ! Surface pressure tendency (Pa/s).
201
202	! Local saved variables:
203	! ----------------------
204
205	integer,save :: day_ini ! Initial date of the run (sol since Ls=0).
206	integer,save :: icount ! Counter of calls to physiq during the run.
207	!$OMP THREADPRIVATE(day_ini,icount)
208
209	real, dimension(:),allocatable,save :: tsurf ! Surface temperature (K).
210	real, dimension(:,:),allocatable,save :: tsoil ! Sub-surface temperatures (K).
211	real, dimension(:,:),allocatable,save :: albedo ! Surface Spectral albedo. By MT2015.
212	real, dimension(:),allocatable,save :: albedo_equivalent ! Spectral Mean albedo.
213
214	!$OMP THREADPRIVATE(tsurf,tsoil,albedo,albedo_equivalent)
215
216	real,dimension(:),allocatable,save :: albedo_bareground ! Bare Ground Albedo. By MT 2015.
217
218	!$OMP THREADPRIVATE(albedo_bareground)
219
220	real,dimension(:),allocatable,save :: emis ! Thermal IR surface emissivity.
221	real,dimension(:,:),allocatable,save :: dtrad ! Net atmospheric radiative heating rate (K.s-1).
222	real,dimension(:),allocatable,save :: fluxrad_sky ! Radiative flux from sky absorbed by surface (W.m-2).
223	real,dimension(:),allocatable,save :: fluxrad ! Net radiative surface flux (W.m-2).
224	real,dimension(:),allocatable,save :: capcal ! Surface heat capacity (J m-2 K-1).
225	real,dimension(:),allocatable,save :: fluxgrd ! Surface conduction flux (W.m-2).
226	real,dimension(:,:),allocatable,save :: qsurf ! Tracer on surface (e.g. kg.m-2).
227	real,dimension(:,:),allocatable,save :: q2 ! Turbulent Kinetic Energy.
228
229	!$OMP THREADPRIVATE(emis,dtrad,fluxrad_sky,fluxrad,capcal,fluxgrd,qsurf,q2)
230
231
232	! Local variables :
233	! -----------------
234
235	real zh(ngrid,nlayer) ! Potential temperature (K).
236	real pw(ngrid,nlayer) ! Vertical velocity (m/s). (NOTE : >0 WHEN DOWNWARDS !!)
237
238	integer l,ig,ierr,iq,nw,isoil
239
240	! FOR DIAGNOSTIC :
241
242	real,dimension(:),allocatable,save :: fluxsurf_lw ! Incident Long Wave (IR) surface flux (W.m-2).
243	real,dimension(:),allocatable,save :: fluxsurf_sw ! Incident Short Wave (stellar) surface flux (W.m-2).
244	real,dimension(:),allocatable,save :: fluxsurfabs_sw ! Absorbed Short Wave (stellar) flux by the surface (W.m-2).
245	real,dimension(:),allocatable,save :: fluxtop_lw ! Outgoing LW (IR) flux to space (W.m-2).
246	real,dimension(:),allocatable,save :: fluxabs_sw ! Absorbed SW (stellar) flux (W.m-2).
247	real,dimension(:),allocatable,save :: fluxtop_dn ! Incoming SW (stellar) radiation at the top of the atmosphere (W.m-2).
248	real,dimension(:),allocatable,save :: fluxdyn ! Horizontal heat transport by dynamics (W.m-2).
249	real,dimension(:,:),allocatable,save :: OLR_nu ! Outgoing LW radiation in each band (Normalized to the band width (W/m2/cm-1)).
250	real,dimension(:,:),allocatable,save :: OSR_nu ! Outgoing SW radiation in each band (Normalized to the band width (W/m2/cm-1)).
251	real,dimension(:,:),allocatable,save :: zdtlw ! LW heating tendencies (K/s).
252	real,dimension(:,:),allocatable,save :: zdtsw ! SW heating tendencies (K/s).
253	real,dimension(:),allocatable,save :: sensibFlux ! Turbulent flux given by the atmosphere to the surface (W.m-2).
254
255	!$OMP THREADPRIVATE(fluxsurf_lw,fluxsurf_sw,fluxsurfabs_sw,fluxtop_lw,fluxabs_sw,fluxtop_dn,fluxdyn,OLR_nu,OSR_nu,&
256
257	!$OMP zdtlw,zdtsw,sensibFlux)
258
259	real zls ! Solar longitude (radians).
260	real zlss ! Sub solar point longitude (radians).
261	real zday ! Date (time since Ls=0, calculated in sols).
262	real zzlay(ngrid,nlayer) ! Altitude at the middle of the atmospheric layers (ref : local surf).
263	real zzlev(ngrid,nlayer+1) ! Altitude at the atmospheric layer boundaries (ref : local surf).
264	real zzlay_eff(ngrid,nlayer) ! Effective altitude at the middle of the atmospheric layers (ref : geoid ).
265	real zzlev_eff(ngrid,nlayer+1) ! Effective altitude at the atmospheric layer boundaries ( ref : geoid ).
266
267	! TENDENCIES due to various processes :
268
269	! For Surface Temperature : (K/s)
270	real zdtsurf(ngrid) ! Cumulated tendencies.
271	real zdtsurfmr(ngrid) ! Mass_redistribution routine.
272	real zdtsdif(ngrid) ! Turbdiff/vdifc routines.
273
274	! For Atmospheric Temperatures : (K/s)
275	real zdtdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
276	real zdtmr(ngrid,nlayer) ! Mass_redistribution routine.
277	real zdtsw1(ngrid,nlayer), zdtlw1(ngrid,nlayer) ! Callcorrk routine.
278
279	! For Surface Tracers : (kg/m2/s)
280	real dqsurf(ngrid,nq) ! Cumulated tendencies.
281	real zdqsdif(ngrid,nq) ! Turbdiff/vdifc routines.
282	real zdqsurfmr(ngrid,nq) ! Mass_redistribution routine.
283
284	! For Tracers : (kg/kg_of_air/s)
285	real zdqadj(ngrid,nlayer,nq) ! Convadj routine.
286	real zdqdif(ngrid,nlayer,nq) ! Turbdiff/vdifc routines.
287	real zdqevap(ngrid,nlayer) ! Turbdiff routine.
288	real zdqmr(ngrid,nlayer,nq) ! Mass_redistribution routine.
289
290	real zdqchi(ngrid,nlayer,nq) ! Chemical tendency ( chemistry routine ).
291
292	real zdqmufi(ngrid,nlayer,nq) ! Microphysical tendency.
293
294	real zdqfibar(ngrid,nlayer,nq) ! For 2D chemistry
295	real zdqmufibar(ngrid,nlayer,nq) ! For 2D chemistry
296
297	! For Winds : (m/s/s)
298	real zdvadj(ngrid,nlayer),zduadj(ngrid,nlayer) ! Convadj routine.
299	real zdumr(ngrid,nlayer),zdvmr(ngrid,nlayer) ! Mass_redistribution routine.
300	real zdvdif(ngrid,nlayer),zdudif(ngrid,nlayer) ! Turbdiff/vdifc routines.
301	real zdhdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
302	real zdhadj(ngrid,nlayer) ! Convadj routine.
303
304	! For Pressure and Mass :
305	real zdmassmr(ngrid,nlayer) ! Atmospheric Mass tendency for mass_redistribution (kg_of_air/m2/s).
306	real zdmassmr_col(ngrid) ! Atmospheric Column Mass tendency for mass_redistribution (kg_of_air/m2/s).
307	real zdpsrfmr(ngrid) ! Pressure tendency for mass_redistribution routine (Pa/s).
308
309
310
311	! Local variables for LOCAL CALCULATIONS:
312	! ---------------------------------------
313	real zflubid(ngrid)
314	real zplanck(ngrid),zpopsk(ngrid,nlayer)
315	real ztim1,ztim2,ztim3, z1,z2
316	real ztime_fin
317	real zdh(ngrid,nlayer)
318	real gmplanet
319	real taux(ngrid),tauy(ngrid)
320
321
322
323	! local variables for DIAGNOSTICS : (diagfi & stat)
324	! -------------------------------------------------
325	real ps(ngrid) ! Surface Pressure.
326	real zt(ngrid,nlayer) ! Atmospheric Temperature.
327	real zu(ngrid,nlayer),zv(ngrid,nlayer) ! Zonal and Meridional Winds.
328	real zq(ngrid,nlayer,nq) ! Atmospheric Tracers.
329	real zdtadj(ngrid,nlayer) ! Convadj Diagnostic.
330	real zdtdyn(ngrid,nlayer) ! Dynamical Heating (K/s).
331	real zdudyn(ngrid,nlayer) ! Dynamical Zonal Wind tendency (m.s-2).
332	real,allocatable,dimension(:,:),save :: ztprevious ! Previous loop Atmospheric Temperature (K) ! Useful for Dynamical Heating calculation.
333	real,allocatable,dimension(:,:),save :: zuprevious ! Previous loop Zonal Wind (m.s-1) ! Useful for Zonal Wind tendency calculation.
334	!$OMP THREADPRIVATE(ztprevious,zuprevious)
335
336	real zhorizwind(ngrid,nlayer) ! Horizontal Wind ( sqrt(u*+vv))
337
338	real vmr(ngrid,nlayer) ! volume mixing ratio
339	real time_phys
340
341	real ISR,ASR,OLR,GND,DYN,GSR,Ts1,Ts2,Ts3,TsS ! for Diagnostic.
342
343	! to test energy conservation (RW+JL)
344	real mass(ngrid,nlayer),massarea(ngrid,nlayer)
345	real dEtot, dEtots, AtmToSurf_TurbFlux
346	real,save :: dEtotSW, dEtotsSW, dEtotLW, dEtotsLW
347	!$OMP THREADPRIVATE(dEtotSW, dEtotsSW, dEtotLW, dEtotsLW)
348	real dEzRadsw(ngrid,nlayer),dEzRadlw(ngrid,nlayer),dEzdiff(ngrid,nlayer)
349	real dEdiffs(ngrid),dEdiff(ngrid)
350
351	!JL12 conservation test for mean flow kinetic energy has been disabled temporarily
352
353	real dItot, dItot_tmp, dVtot, dVtot_tmp
354
355	real dWtot, dWtot_tmp, dWtots, dWtots_tmp
356
357
358	! For Clear Sky Case.
359	real fluxsurf_lw1(ngrid), fluxsurf_sw1(ngrid), fluxsurfabs_sw1(ngrid) ! For SW/LW flux.
360	real fluxtop_lw1(ngrid), fluxabs_sw1(ngrid) ! For SW/LW flux.
361	real albedo_equivalent1(ngrid) ! For Equivalent albedo calculation.
362	real tf, ntf
363
364	real,allocatable,dimension(:,:),save :: qsurf_hist
365	!$OMP THREADPRIVATE(qsurf_hist)
366
367	! Miscellaneous :
368	character(len=10) :: tmp1
369	character(len=10) :: tmp2
370
371	! Local variables for Titan chemistry and microphysics
372	! ----------------------------------------------------
373
374	real,save :: ctimestep ! Chemistry timestep (s)
375	!$OMP THREADPRIVATE(ctimestep)
376
377	! Chemical tracers in molar fraction
378	real, dimension(ngrid,nlayer,nkim) :: ychim ! (mol/mol)
379	real, dimension(ngrid,nlayer,nkim) :: ychimbar ! For 2D chemistry
380
381	! Molar fraction tendencies ( chemistry, condensation and evaporation ) for tracers (mol/mol/s)
382	real, dimension(:,:,:), allocatable, save :: dycchi ! NB : Only for chem tracers. Saved since chemistry is not called every step.
383	!$OMP THREADPRIVATE(dycchi)
384	real, dimension(ngrid,nlayer,nq) :: dyccond ! Condensation rate. NB : for all tracers, as we want to use indx on it.
385	real, dimension(ngrid,nlayer,nq) :: dyccondbar ! For 2D chemistry
386	real, dimension(ngrid) :: dycevapCH4 ! Surface "pseudo-evaporation" rate (forcing constant surface humidity).
387
388	! Saturation profiles
389	real, dimension(ngrid,nlayer,nkim) :: ysat ! (mol/mol)
390
391	! Surface methane
392	real, dimension(:), allocatable, save :: tankCH4 ! Depth of surface methane tank (m)
393	!$OMP THREADPRIVATE(tankCH4)
394
395	real :: i2e(ngrid,nlayer) ! int 2 ext factor ( X.kg-1 -> X.m-3 for diags )
396
397	real,save,dimension(:,:,:), allocatable :: tpq ! Tracers for decoupled microphysical tests ( temporary in 01/18 )
398	!$OMP THREADPRIVATE(tpq)
399	real,dimension(ngrid,nlayer,nq) :: dtpq ! (temporary in 01/18)
400
401
402	!-----------------------------------------------------------------------------
403	! Interface to calmufi
404	! --> needed in order to pass assumed-shape arrays. Otherwise we must put calmufi in a module
405	! (to have an explicit interface generated by the compiler).
406	! Or one can put calmufi in MMP_GCM module (in muphytitan).
407	INTERFACE
408	SUBROUTINE calmufi(dt, plev, zlev, play, zlay, g3d, temp, pq, zdqfi, zdq)
409	REAL(kind=8), INTENT(IN) :: dt !! Physics timestep (s).
410	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: plev !! Pressure levels (Pa).
411	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: zlev !! Altitude levels (m).
412	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: play !! Pressure layers (Pa).
413	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: zlay !! Altitude at the center of each layer (m).
414	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: g3d !! Latitude-Altitude depending gravitational acceleration (m.s-2).
415	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: temp !! Temperature at the center of each layer (K).
416	REAL(kind=8), DIMENSION(:,:,:), INTENT(IN) :: pq !! Tracers ($kg.kg^{-1}}$).
417	REAL(kind=8), DIMENSION(:,:,:), INTENT(IN) :: zdqfi !! Tendency from former processes for tracers ($kg.kg^{-1}}$).
418	REAL(kind=8), DIMENSION(:,:,:), INTENT(OUT) :: zdq !! Microphysical tendency for tracers ($kg.kg^{-1}}$).
419	END SUBROUTINE calmufi
420	END INTERFACE
421
422	!==================================================================================================
423
424	! -----------------
425	! I. INITIALISATION
426	! -----------------
427
428	! --------------------------------
429	! I.1 First Call Initialisation.
430	! --------------------------------
431	if (firstcall) then
432	allocate(tpq(ngrid,nlayer,nq))
433	tpq(:,:,:) = pq(:,:,:)
434
435	! Initialisation of nmicro as well as tracers names, indexes ...
436	if (ngrid.ne.1) then ! Already done in rcm1d
437	call initracer2(nq,nametrac) ! WARNING JB (27/03/2018): should be wrapped in an OMP SINGLE statement (see module notes)
438	endif
439
440	! Allocate saved arrays.
441	ALLOCATE(tsurf(ngrid))
442	ALLOCATE(tsoil(ngrid,nsoilmx))
443	ALLOCATE(albedo(ngrid,L_NSPECTV))
444	ALLOCATE(albedo_equivalent(ngrid))
445	ALLOCATE(albedo_bareground(ngrid))
446	ALLOCATE(emis(ngrid))
447	ALLOCATE(dtrad(ngrid,nlayer))
448	ALLOCATE(fluxrad_sky(ngrid))
449	ALLOCATE(fluxrad(ngrid))
450	ALLOCATE(capcal(ngrid))
451	ALLOCATE(fluxgrd(ngrid))
452	ALLOCATE(qsurf(ngrid,nq))
453	ALLOCATE(q2(ngrid,nlayer+1))
454	ALLOCATE(tankCH4(ngrid))
455	ALLOCATE(ztprevious(ngrid,nlayer))
456	ALLOCATE(zuprevious(ngrid,nlayer))
457	ALLOCATE(qsurf_hist(ngrid,nq))
458	ALLOCATE(fluxsurf_lw(ngrid))
459	ALLOCATE(fluxsurf_sw(ngrid))
460	ALLOCATE(fluxsurfabs_sw(ngrid))
461	ALLOCATE(fluxtop_lw(ngrid))
462	ALLOCATE(fluxabs_sw(ngrid))
463	ALLOCATE(fluxtop_dn(ngrid))
464	ALLOCATE(fluxdyn(ngrid))
465	ALLOCATE(OLR_nu(ngrid,L_NSPECTI))
466	ALLOCATE(OSR_nu(ngrid,L_NSPECTV))
467	ALLOCATE(sensibFlux(ngrid))
468	ALLOCATE(zdtlw(ngrid,nlayer))
469	ALLOCATE(zdtsw(ngrid,nlayer))
470
471	! This is defined in comsaison_h
472	ALLOCATE(mu0(ngrid))
473	ALLOCATE(fract(ngrid))
474	! This is defined in radcommon_h
475	ALLOCATE(gzlat(ngrid,nlayer))
476	ALLOCATE(gzlat_ig(nlayer))
477	ALLOCATE(Cmk(nlayer))
478
479	! Variables set to 0
480	! ~~~~~~~~~~~~~~~~~~
481	dtrad(:,:) = 0.0
482	fluxrad(:) = 0.0
483	zdtsw(:,:) = 0.0
484	zdtlw(:,:) = 0.0
485
486	! Initialize setup for correlated-k radiative transfer
487	! JVO 17 : Was in callcorrk firstcall, but we need spectral intervals for microphysics
488	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
489
490	if (corrk) then
491
492	call system('rm -f surf_vals_long.out')
493
494	write( tmp1, '(i3)' ) L_NSPECTI
495	write( tmp2, '(i3)' ) L_NSPECTV
496	banddir=trim(adjustl(tmp1))//'x'//trim(adjustl(tmp2))
497	banddir=trim(adjustl(corrkdir))//'/'//trim(adjustl(banddir))
498
499	call setspi ! Basic infrared properties.
500	call setspv ! Basic visible properties.
501	call sugas_corrk ! Set up gaseous absorption properties.
502
503	OLR_nu(:,:) = 0.
504	OSR_nu(:,:) = 0.
505
506	endif
507
508	! Initialize names and timestep for chemistry
509	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
510
511	if ( callchim ) then
512
513	if ( moyzon_ch .and. ngrid.eq.1 ) then
514	print *, "moyzon_ch=",moyzon_ch," and ngrid=1"
515	print *, "Please desactivate zonal mean for 1D !"
516	stop
517	endif
518
519	allocate(dycchi(ngrid,nlayer,nkim)) ! only for chemical tracers
520
521	! Chemistry timestep
522	ctimestep = ptimestep*REAL(ichim)
523
524	zdqchi(:,:,:) = 0.0
525
526	endif
527
528	! Initialize microphysics.
529	! ~~~~~~~~~~~~~~~~~~~~~~~~
530
531	IF ( callmufi ) THEN
532	! WARNING JB (27/03/2018): inimufi AND mmp_initialize_optics should be wrapped in an OMP SINGLE statement.
533	call inimufi(ptimestep)
534	! Optical coupling of YAMMS is plugged but inactivated for now
535	! as long as the microphysics only isn't fully debugged -- JVO 01/18
536	! NOTE JB (03/18): mmp_optic_file is initialized in inimufi => mmp_initialize_optics must be called AFTER inimufi
537	IF (.NOT.uncoupl_optic_haze) call mmp_initialize_optics(mmp_optic_file)
538
539	! initialize microphysics diagnostics arrays.
540	call ini_diag_arrays(ngrid,nlayer,nice)
541
542	ENDIF
543
544
545	#ifdef CPP_XIOS
546	! Initialize XIOS context
547	write(,) "physiq: call wxios_context_init"
548	CALL wxios_context_init
549	#endif
550
551	! Read 'startfi.nc' file.
552	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
553	call phyetat0(startphy_file,ngrid,nlayer,"startfi.nc",0,0,nsoilmx,nq, &
554	day_ini,time_phys,tsurf,tsoil,emis,q2,qsurf,tankCH4)
555	if (.not.startphy_file) then
556	! additionnal "academic" initialization of physics
557	if (is_master) write(,) "Physiq: initializing tsurf(:) to pt(:,1) !!"
558	tsurf(:)=pt(:,1)
559	if (is_master) write(,) "Physiq: initializing tsoil(:) to pt(:,1) !!"
560	do isoil=1,nsoilmx
561	tsoil(:,isoil)=tsurf(:)
562	enddo
563	if (is_master) write(,) "Physiq: initializing day_ini to pdat !"
564	day_ini=pday
565	endif
566
567	if (pday.ne.day_ini) then
568	write(,) "ERROR in physiq.F90:"
569	write(,) "bad synchronization between physics and dynamics"
570	write(,) "dynamics day: ",pday
571	write(,) "physics day: ",day_ini
572	stop
573	endif
574	write (,) 'In physiq day_ini =', day_ini
575
576	! Initialize albedo calculation.
577	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
578	albedo(:,:)=0.0
579	albedo_bareground(:)=0.0
580	call surfini(ngrid,nq,qsurf,albedo,albedo_bareground)
581
582	! Initialize orbital calculation.
583	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
584	call iniorbit(apoastr,periastr,year_day,peri_day,obliquit)
585
586	if(tlocked)then
587	print*,'Planet is tidally locked at resonance n=',nres
588	print*,'Make sure you have the right rotation rate!!!'
589	endif
590
591
592	! Initialize soil.
593	! ~~~~~~~~~~~~~~~~
594	if (callsoil) then
595
596	call soil(ngrid,nsoilmx,firstcall,lastcall,inertiedat, &
597	ptimestep,tsurf,tsoil,capcal,fluxgrd)
598
599	else ! else of 'callsoil'.
600
601	print*,'WARNING! Thermal conduction in the soil turned off'
602	capcal(:)=1.e6
603	fluxgrd(:)=intheat
604	print*,'Flux from ground = ',intheat,' W m^-2'
605
606	endif ! end of 'callsoil'.
607
608	icount=1
609
610
611	! Initialize surface history variable.
612	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
613	qsurf_hist(:,:)=qsurf(:,:)
614
615	! Initialize variable for dynamical heating and zonal wind tendency diagnostic
616	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
617	ztprevious(:,:)=pt(:,:)
618	zuprevious(:,:)=pu(:,:)
619
620
621	if(meanOLR)then
622	call system('rm -f rad_bal.out') ! to record global radiative balance.
623	call system('rm -f tem_bal.out') ! to record global mean/max/min temperatures.
624	call system('rm -f h2o_bal.out') ! to record global hydrological balance.
625	endif
626
627	if (ngrid.ne.1) then
628	! Note : no need to create a restart file in 1d.
629	call physdem0("restartfi.nc",longitude,latitude,nsoilmx,ngrid,nlayer,nq, &
630	ptimestep,pday+nday,time_phys,cell_area, &
631	albedo_bareground,inertiedat,zmea,zstd,zsig,zgam,zthe)
632	endif
633
634	! XIOS outputs
635	#ifdef CPP_XIOS
636
637	write(,) "physiq: call initialize_xios_output"
638	call initialize_xios_output(pday,ptime,ptimestep,daysec, &
639	presnivs,pseudoalt)
640	#endif
641	write(,) "physiq: end of firstcall"
642	endif ! end of 'firstcall'
643
644	! ------------------------------------------------------
645	! I.2 Initializations done at every physical timestep:
646	! ------------------------------------------------------
647
648	#ifdef CPP_XIOS
649	! update XIOS time/calendar
650	call update_xios_timestep
651	#endif
652
653	! Initialize various variables
654	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
655
656	pdt(:,:) = 0.0
657	zdtsurf(:) = 0.0
658	pdq(:,:,:) = 0.0
659	dqsurf(:,:) = 0.0
660	pdu(:,:) = 0.0
661	pdv(:,:) = 0.0
662	pdpsrf(:) = 0.0
663	zflubid(:) = 0.0
664	taux(:) = 0.0
665	tauy(:) = 0.0
666
667	zday=pday+ptime ! Compute time, in sols (and fraction thereof).
668
669	! Compute Stellar Longitude (Ls), and orbital parameters.
670	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
671	if (season) then
672	call stellarlong(zday,zls)
673	else
674	call stellarlong(float(day_ini),zls)
675	end if
676
677	call orbite(zls,dist_star,declin,right_ascen)
678
679	if (tlocked) then
680	zlss=Mod(-(2.pi(zday/year_day)nres - right_ascen),2.pi)
681	elseif (diurnal) then
682	zlss=-2.pi(zday-.5)
683	else if(diurnal .eqv. .false.) then
684	zlss=9999.
685	endif
686
687
688	! Compute variations of g with latitude (oblate case).
689	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
690	if (oblate .eqv. .false.) then
691	gzlat(:,:) = g
692	else if (flatten .eq. 0.0 .or. J2 .eq. 0.0 .or. Rmean .eq. 0.0 .or. MassPlanet .eq. 0.0) then
693	print*,'I need values for flatten, J2, Rmean and MassPlanet to compute gzlat (else set oblate=.false.)'
694	call abort
695	else
696	gmplanet = MassPlanetgrav1e24
697	do ig=1,ngrid
698	gzlat(ig,:)= gmplanet/(Rmean*2) (1.D0 + 0.75 J2 - 2.0flatten/3. + (2.flatten - 15./4. J2) * cos(2. * (pi/2. - latitude(ig))))
699	end do
700	endif
701
702	! Compute altitudes with the geopotential coming from the dynamics.
703	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
704
705	if (eff_gz .eqv. .false.) then
706
707	do l=1,nlayer
708	zzlay(:,l) = pphi(:,l) / gzlat(:,l) ! Reference = local surface
709	enddo
710
711	else ! In this case we consider variations of g with altitude
712
713	do l=1,nlayer
714	zzlay(:,l) = gradrad / ( g*rad - ( pphi(:,l) + phisfi(:) )) - rad
715	gzlat(:,l) = gradrad / ( rad + zzlay(:,l) )**2
716	end do
717
718	endif ! if eff_gz
719
720	zzlev(:,1)=0.
721	zzlev(:,nlayer+1)=1.e7 ! Dummy top of last layer above 10000 km...
722	! JVO 19 : This altitude is indeed dummy for the GCM and fits ptop=0
723	! but for upper chemistry that's a pb -> we anyway redefine it just after ..
724
725	do l=2,nlayer
726	do ig=1,ngrid
727	z1=(pplay(ig,l-1)+pplev(ig,l))/(pplay(ig,l-1)-pplev(ig,l))
728	z2=(pplev(ig,l)+pplay(ig,l))/(pplev(ig,l)-pplay(ig,l))
729	zzlev(ig,l)=(z1zzlay(ig,l-1)+z2zzlay(ig,l))/(z1+z2)
730	enddo
731	enddo
732
733	! Effective altitudes ( eg needed for chemistry ) with correct g, and with reference to the geoid
734	! JVO 19 : We shall always have correct altitudes in chemistry no matter what's in physics
735	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
736	if (moyzon_ch) then ! Zonal averages
737
738	zzlaybar(1,:)=gradrad/(g*rad-(zphibar(1,:)+zphisbar(1)))-rad ! reference = geoid
739	zzlevbar(1,1)=zphisbar(1)/g
740	DO l=2,nlayer
741	z1=(zplaybar(1,l-1)+zplevbar(1,l))/(zplaybar(1,l-1)-zplevbar(1,l))
742	z2=(zplevbar(1,l) +zplaybar(1,l))/(zplevbar(1,l) -zplaybar(1,l))
743	zzlevbar(1,l)=(z1zzlaybar(1,l-1)+z2zzlaybar(1,l))/(z1+z2)
744	ENDDO
745	zzlevbar(1,nlayer+1)=zzlaybar(1,nlayer)+(zzlaybar(1,nlayer)-zzlevbar(1,nlayer))
746
747	DO ig=2,ngrid
748	if (latitude(ig).ne.latitude(ig-1)) then
749	DO l=1,nlayer
750	zzlaybar(ig,l)=gradrad/(g*rad-(zphibar(ig,l)+zphisbar(ig)))-rad
751	ENDDO
752	zzlevbar(ig,1)=zphisbar(ig)/g
753	DO l=2,nlayer
754	z1=(zplaybar(ig,l-1)+zplevbar(ig,l))/ (zplaybar(ig,l-1)-zplevbar(ig,l))
755	z2=(zplevbar(ig,l) +zplaybar(ig,l))/(zplevbar(ig,l) -zplaybar(ig,l))
756	zzlevbar(ig,l)=(z1zzlaybar(ig,l-1)+z2zzlaybar(ig,l))/(z1+z2)
757	ENDDO
758	zzlevbar(ig,nlayer+1)=zzlaybar(ig,nlayer)+(zzlaybar(ig,nlayer)-zzlevbar(ig,nlayer))
759	else
760	zzlaybar(ig,:)=zzlaybar(ig-1,:)
761	zzlevbar(ig,:)=zzlevbar(ig-1,:)
762	endif
763	ENDDO
764
765	else ! if not moyzon
766
767	DO l=1,nlayer
768	zzlay_eff(ig,l)=gradrad/(g*rad-(pphi(ig,l)+phisfi(ig)))-rad ! reference = geoid
769	ENDDO
770	zzlev_eff(ig,1)=phisfi(ig)/g
771	DO l=2,nlayer
772	z1=(pplay(ig,l-1)+pplev(ig,l))/ (pplay(ig,l-1)-pplev(ig,l))
773	z2=(pplev(ig,l) +pplay(ig,l))/(pplev(ig,l) -pplay(ig,l))
774	zzlev_eff(ig,l)=(z1zzlay_eff(ig,l-1)+z2zzlay_eff(ig,l))/(z1+z2)
775	ENDDO
776	zzlev_eff(ig,nlayer+1)=zzlay_eff(ig,nlayer)+(zzlay_eff(ig,nlayer)-zzlev_eff(ig,nlayer))
777
778	endif ! moyzon
779
780	! -------------------------------------------------------------------------------------
781	! Compute potential temperature
782	! Note : Potential temperature calculation may not be the same in physiq and dynamic...
783	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
784	do l=1,nlayer
785	do ig=1,ngrid
786	zpopsk(ig,l)=(pplay(ig,l)/pplev(ig,1))**rcp
787	zh(ig,l)=pt(ig,l)/zpopsk(ig,l)
788	mass(ig,l) = (pplev(ig,l) - pplev(ig,l+1))/gzlat(ig,l)
789	massarea(ig,l)=mass(ig,l)*cell_area(ig)
790	enddo
791	enddo
792
793	! Compute vertical velocity (m/s) from vertical mass flux
794	! w = F / (rhoarea) and rho = P/(rT)
795	! But first linearly interpolate mass flux to mid-layers
796	do l=1,nlayer-1
797	pw(:,l)=0.5*(flxw(:,l)+flxw(:,l+1))
798	enddo
799	pw(:,nlayer)=0.5*flxw(:,nlayer) ! since flxw(nlayer+1)=0
800	do l=1,nlayer
801	pw(:,l)=(pw(:,l)rpt(:,l)) / (pplay(:,l)*cell_area(:))
802	enddo
803
804	!---------------------------------
805	! II. Compute radiative tendencies
806	!---------------------------------
807
808	if (callrad) then
809	if( mod(icount-1,iradia).eq.0.or.lastcall) then
810
811	! Compute local stellar zenith angles
812	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
813	if (tlocked) then
814	! JL14 corrects tidally resonant (and inclined) cases. nres=omega_rot/omega_orb
815	ztim1=SIN(declin)
816	ztim2=COS(declin)*COS(zlss)
817	ztim3=COS(declin)*SIN(zlss)
818
819	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
820	ztim1,ztim2,ztim3,mu0,fract, flatten)
821
822	elseif (diurnal) then
823	ztim1=SIN(declin)
824	ztim2=COS(declin)COS(2.pi*(zday-.5))
825	ztim3=-COS(declin)SIN(2.pi*(zday-.5))
826
827	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
828	ztim1,ztim2,ztim3,mu0,fract, flatten)
829	else if(diurnal .eqv. .false.) then
830
831	call mucorr(ngrid,declin,latitude,mu0,fract,10000.,rad,flatten)
832	! WARNING: this function appears not to work in 1D
833
834	endif
835
836	! Eclipse incoming sunlight (e.g. Saturn ring shadowing).
837	if(rings_shadow) then
838	call call_rings(ngrid, ptime, pday, diurnal)
839	endif
840
841
842	if (corrk) then
843
844	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
845	! II.a Call correlated-k radiative transfer scheme
846	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
847
848	call call_profilgases(nlayer)
849
850	! standard callcorrk
851	call callcorrk(ngrid,nlayer,pq,nq,qsurf,zday, &
852	albedo,albedo_equivalent,emis,mu0,pplev,pplay,pt, &
853	tsurf,fract,dist_star, &
854	zdtlw,zdtsw,fluxsurf_lw,fluxsurf_sw, &
855	fluxsurfabs_sw,fluxtop_lw, &
856	fluxabs_sw,fluxtop_dn,OLR_nu,OSR_nu, &
857	lastcall)
858
859	! Radiative flux from the sky absorbed by the surface (W.m-2).
860	GSR=0.0
861	fluxrad_sky(:)=emis(:)*fluxsurf_lw(:)+fluxsurfabs_sw(:)
862
863	!if(noradsurf)then ! no lower surface; SW flux just disappears
864	! GSR = SUM(fluxsurf_sw(:)*cell_area(:))/totarea
865	! fluxrad_sky(:)=emis(:)*fluxsurf_lw(:)
866	! print*,'SW lost in deep atmosphere = ',GSR,' W m^-2'
867	!endif
868
869	! Net atmospheric radiative heating rate (K.s-1)
870	dtrad(:,:)=zdtsw(:,:)+zdtlw(:,:)
871
872	elseif(newtonian)then
873
874	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
875	! II.b Call Newtonian cooling scheme
876	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
877	call newtrelax(ngrid,nlayer,mu0,sinlat,zpopsk,pt,pplay,pplev,dtrad,firstcall)
878
879	zdtsurf(:) = +(pt(:,1)-tsurf(:))/ptimestep
880	! e.g. surface becomes proxy for 1st atmospheric layer ?
881
882	else
883
884	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
885	! II.c Atmosphere has no radiative effect
886	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
887	fluxtop_dn(:) = fract(:)mu0(:)Fat1AU/dist_star**2
888	if(ngrid.eq.1)then ! / by 4 globally in 1D case...
889	fluxtop_dn(1) = fract(1)Fat1AU/dist_star*2/2.0
890	endif
891	fluxsurf_sw(:) = fluxtop_dn(:)
892	print*,'------------WARNING---WARNING------------' ! by MT2015.
893	print*,'You are in corrk=false mode, '
894	print*,'and the surface albedo is taken equal to the first visible spectral value'
895
896	fluxsurfabs_sw(:) = fluxtop_dn(:)*(1.-albedo(:,1))
897	fluxrad_sky(:) = fluxsurfabs_sw(:)
898	fluxtop_lw(:) = emis(:)sigmatsurf(:)**4
899
900	dtrad(:,:)=0.0 ! no atmospheric radiative heating
901
902	endif ! end of corrk
903
904	endif ! of if(mod(icount-1,iradia).eq.0)
905
906
907	! Transformation of the radiative tendencies
908	! ------------------------------------------
909	zplanck(:)=tsurf(:)*tsurf(:)
910	zplanck(:)=emis(:)sigmazplanck(:)*zplanck(:)
911	fluxrad(:)=fluxrad_sky(:)-zplanck(:)
912	pdt(:,:)=pdt(:,:)+dtrad(:,:)
913
914	! Test of energy conservation
915	!----------------------------
916	if(enertest)then
917	call planetwide_sumval(cppmassarea(:,:)zdtsw(:,:)/totarea_planet,dEtotSW)
918	call planetwide_sumval(cppmassarea(:,:)zdtlw(:,:)/totarea_planet,dEtotLW)
919	!call planetwide_sumval(fluxsurf_sw(:)(1.-albedo_equivalent(:))cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
920	call planetwide_sumval(fluxsurfabs_sw(:)*cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
921	call planetwide_sumval((fluxsurf_lw(:)emis(:)-zplanck(:))cell_area(:)/totarea_planet,dEtotsLW)
922	dEzRadsw(:,:)=cppmass(:,:)zdtsw(:,:)
923	dEzRadlw(:,:)=cppmass(:,:)zdtlw(:,:)
924	if (is_master) then
925	print*,'---------------------------------------------------------------'
926	print*,'In corrk SW atmospheric heating =',dEtotSW,' W m-2'
927	print*,'In corrk LW atmospheric heating =',dEtotLW,' W m-2'
928	print*,'atmospheric net rad heating (SW+LW) =',dEtotLW+dEtotSW,' W m-2'
929	print*,'In corrk SW surface heating =',dEtotsSW,' W m-2'
930	print*,'In corrk LW surface heating =',dEtotsLW,' W m-2'
931	print*,'surface net rad heating (SW+LW) =',dEtotsLW+dEtotsSW,' W m-2'
932	endif
933	endif ! end of 'enertest'
934
935	endif ! of if (callrad)
936
937
938
939	! --------------------------------------------
940	! III. Vertical diffusion (turbulent mixing) :
941	! --------------------------------------------
942
943	if (calldifv) then
944
945	zflubid(:)=fluxrad(:)+fluxgrd(:)
946
947	! JL12 the following if test is temporarily there to allow us to compare the old vdifc with turbdiff.
948	if (UseTurbDiff) then
949
950	call turbdiff(ngrid,nlayer,nq, &
951	ptimestep,capcal,lwrite, &
952	pplay,pplev,zzlay,zzlev,z0, &
953	pu,pv,pt,zpopsk,pq,tsurf,emis,qsurf, &
954	pdt,pdq,zflubid, &
955	zdudif,zdvdif,zdtdif,zdtsdif, &
956	sensibFlux,q2,zdqdif,zdqsdif, &
957	taux,tauy,lastcall)
958
959	else
960
961	zdh(:,:)=pdt(:,:)/zpopsk(:,:)
962
963	call vdifc(ngrid,nlayer,nq,zpopsk, &
964	ptimestep,capcal,lwrite, &
965	pplay,pplev,zzlay,zzlev,z0, &
966	pu,pv,zh,pq,tsurf,emis,qsurf, &
967	zdh,pdq,zflubid, &
968	zdudif,zdvdif,zdhdif,zdtsdif, &
969	sensibFlux,q2,zdqdif,zdqsdif, &
970	taux,tauy,lastcall)
971
972	zdtdif(:,:)=zdhdif(:,:)*zpopsk(:,:) ! for diagnostic only
973	zdqevap(:,:)=0.
974
975	end if !end of 'UseTurbDiff'
976
977
978	pdv(:,:)=pdv(:,:)+zdvdif(:,:)
979	pdu(:,:)=pdu(:,:)+zdudif(:,:)
980	pdt(:,:)=pdt(:,:)+zdtdif(:,:)
981	zdtsurf(:)=zdtsurf(:)+zdtsdif(:)
982
983	if (tracer) then
984	pdq(:,:,:)=pdq(:,:,:)+ zdqdif(:,:,:)
985	dqsurf(:,:)=dqsurf(:,:) + zdqsdif(:,:)
986	end if ! of if (tracer)
987
988
989	! test energy conservation
990	!-------------------------
991	if(enertest)then
992
993	dEzdiff(:,:)=cppmass(:,:)zdtdif(:,:)
994	do ig = 1, ngrid
995	dEdiff(ig)=SUM(dEzdiff (ig,:))+ sensibFlux(ig)! subtract flux to the ground
996	dEzdiff(ig,1)= dEzdiff(ig,1)+ sensibFlux(ig)! subtract flux to the ground
997	enddo
998
999	call planetwide_sumval(dEdiff(:)*cell_area(:)/totarea_planet,dEtot)
1000	dEdiffs(:)=capcal(:)*zdtsdif(:)-zflubid(:)-sensibFlux(:)
1001	call planetwide_sumval(dEdiffs(:)*cell_area(:)/totarea_planet,dEtots)
1002	call planetwide_sumval(sensibFlux(:)*cell_area(:)/totarea_planet,AtmToSurf_TurbFlux)
1003
1004	if (is_master) then
1005
1006	if (UseTurbDiff) then
1007	print*,'In TurbDiff sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
1008	print*,'In TurbDiff non-cons atm nrj change =',dEtot,' W m-2'
1009	print*,'In TurbDiff (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1010	else
1011	print*,'In vdifc sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
1012	print*,'In vdifc non-cons atm nrj change =',dEtot,' W m-2'
1013	print*,'In vdifc (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1014	end if
1015	endif ! end of 'is_master'
1016
1017	! JL12 : note that the black body radiative flux emitted by the surface has been updated by the implicit scheme but not given back elsewhere.
1018	endif ! end of 'enertest'
1019
1020	else ! calldifv
1021
1022	if(.not.newtonian)then
1023
1024	zdtsurf(:) = zdtsurf(:) + (fluxrad(:) + fluxgrd(:))/capcal(:)
1025
1026	endif
1027
1028	endif ! end of 'calldifv'
1029
1030
1031	!----------------------------------
1032	! IV. Dry convective adjustment :
1033	!----------------------------------
1034
1035	if(calladj) then
1036
1037	zdh(:,:) = pdt(:,:)/zpopsk(:,:)
1038	zduadj(:,:)=0.0
1039	zdvadj(:,:)=0.0
1040	zdhadj(:,:)=0.0
1041
1042
1043	call convadj(ngrid,nlayer,nq,ptimestep, &
1044	pplay,pplev,zpopsk, &
1045	pu,pv,zh,pq, &
1046	pdu,pdv,zdh,pdq, &
1047	zduadj,zdvadj,zdhadj, &
1048	zdqadj)
1049
1050	pdu(:,:) = pdu(:,:) + zduadj(:,:)
1051	pdv(:,:) = pdv(:,:) + zdvadj(:,:)
1052	pdt(:,:) = pdt(:,:) + zdhadj(:,:)*zpopsk(:,:)
1053	zdtadj(:,:) = zdhadj(:,:)*zpopsk(:,:) ! for diagnostic only
1054
1055	if(tracer) then
1056	pdq(:,:,:) = pdq(:,:,:) + zdqadj(:,:,:)
1057	end if
1058
1059	! Test energy conservation
1060	if(enertest)then
1061	call planetwide_sumval(cppmassarea(:,:)zdtadj(:,:)/totarea_planet,dEtot)
1062	if (is_master) print*,'In convadj atmospheric energy change =',dEtot,' W m-2'
1063	endif
1064
1065
1066	endif ! end of 'calladj'
1067
1068
1069	!---------------------------------------------
1070	! V. Specific parameterizations for tracers
1071	!---------------------------------------------
1072
1073	if (tracer) then
1074
1075	! -------------------
1076	! V.1 Microphysics
1077	! -------------------
1078
1079	! JVO 05/18 : We must call microphysics before chemistry, for condensation !
1080
1081	if (callmufi) then
1082	#ifdef USE_QTEST
1083	dtpq(:,:,:) = 0.0 ! we want tpq to go only through mufi
1084	call calmufi(ptimestep,pplev,zzlev,pplay,zzlay,gzlat,pt,tpq,dtpq,zdqmufi)
1085	tpq(:,:,:) = tpq(:,:,:) + zdqmufi(:,:,:)ptimestep ! only manipulation of tpq->ptimestep here
1086	#else
1087	call calmufi(ptimestep,pplev,zzlev,pplay,zzlay,gzlat,pt,pq,pdq,zdqmufi) ! JVO 19 : To be fixed, what altitude do we need ?
1088	pdq(:,:,:) = pdq(:,:,:) + zdqmufi(:,:,:)
1089	#endif
1090
1091	! Microphysics condensation for 2D fields to sent non-saturated fields to photochem
1092	if ( callclouds .and. moyzon_ch .and. mod(icount-1,ichim).eq.0 ) then
1093	zdqfibar(:,:,:) = 0.0 ! We work in zonal average -> forget processes other than condensation
1094	call calmufi(ptimestep,zplevbar,zzlevbar,zplaybar,zzlaybar, &
1095	gzlat,ztfibar,zqfibar,zdqfibar,zdqmufibar)
1096	endif
1097
1098	endif
1099
1100	! -----------------
1101	! V.2. Chemistry
1102	! -----------------
1103	! NB : Must be call last ( brings fields back to an equilibrium )
1104
1105	! Known bug ? ( JVO 18 ) : If you try to use chimi_indx instead of iq+nmicro
1106	! it leads to weird results / crash on dev mod ( ok in debug ) ... Why ? Idk ...
1107
1108	if (callchim) then
1109
1110	! o. Convert updated tracers to molar fraction
1111	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1112	do iq = 1,nkim
1113	ychim(:,:,iq) = ( pq(:,:,iq+nmicro) + pdq(:,:,iq+nmicro) ) / rat_mmol(iq+nmicro)
1114	enddo
1115
1116	! JVO 05/18 : We update zonally averaged fields with condensation
1117	! as it is compulsory to have correct photochem production. But for other
1118	! processes ( convadj ... ) we miss them in any case as we work in zonally/diurnal
1119	! mean -> no fine diurnal/short time evolution, only seasonal evolution only.
1120	if ( moyzon_ch .and. mod(icount-1,ichim).eq. 0 ) then
1121	do iq = 1,nkim
1122	ychimbar(:,:,iq) = zqfibar(:,:,iq+nmicro) / rat_mmol(iq+nmicro)
1123	if ( callclouds ) then
1124	ychimbar(:,:,iq) = ychimbar(:,:,iq) + ( zdqmufibar(:,:,iq+nmicro) / rat_mmol(iq+nmicro) )
1125	endif
1126	enddo
1127	endif
1128
1129	! i. Condensation of the 3D tracers after the transport
1130	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1131
1132	call calc_ysat(ngrid,nlayer,pplay/100.0,pt,ysat) ! Compute saturation profiles for every grid point
1133
1134	dyccond(:,:,:) = 0.0 ! Default value -> no condensation
1135
1136	do iq=1,nkim
1137	where ( ychim(:,:,iq).gt.ysat(:,:,iq) ) &
1138	dyccond(:,:,iq+nmicro) = ( -ychim(:,:,iq)+ysat(:,:,iq) ) / ptimestep
1139	enddo
1140
1141	if ( callclouds ) dyccond(:,:,ices_indx) = 0.0 ! Condensation have been calculated in the cloud microphysics
1142
1143	do iq=1,nkim
1144	ychim(:,:,iq) = ychim(:,:,iq) + dyccond(:,:,iq+nmicro) ! update molar ychim for following calchim
1145
1146	pdq(:,:,iq+nmicro) = pdq(:,:,iq+nmicro) + dyccond(:,:,iq+nmicro)*rat_mmol(iq+nmicro) ! convert tendencies to mass mixing ratio
1147	enddo
1148
1149
1150	! ii. 2D zonally averaged fields need to condense and evap before photochem
1151	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1152	if ( moyzon_ch .and. mod(icount-1,ichim).eq. 0 ) then
1153
1154	call calc_ysat(ngrid,nlayer,zplaybar/100.0,ztfibar,ysat) ! Compute saturation profiles for every grid point for the zon-ave fields
1155
1156	dyccondbar(:,:,:) = 0.0 ! Default value -> no condensation
1157
1158	do iq = 1,nkim
1159	where ( ychimbar(:,:,iq).gt.ysat(:,:,iq) ) &
1160	dyccondbar(:,:,iq+nmicro) = ( -ychimbar(:,:,iq)+ysat(:,:,iq) ) / ptimestep
1161	enddo
1162
1163	if ( callclouds ) dyccondbar(:,:,ices_indx) = 0.0 ! Condensation have been calculated in the cloud microphysics
1164
1165	do iq=1,nkim
1166	ychimbar(:,:,iq) = ychimbar(:,:,iq) + dyccondbar(:,:,iq+nmicro)
1167	enddo
1168
1169	! Pseudo-evap ( forcing constant surface humidity )
1170	do ig=1,ngrid
1171	if ( ychimbar(ig,1,7+nmicro) .lt. botCH4 ) ychimbar(ig,1,7+nmicro) = botCH4
1172	enddo
1173
1174	endif ! if ( moyzon_ch .and. mod(icount-1,ichim).eq. 0 )
1175
1176	! iii. Photochemistry ( must be call after condensation (and evap of 2D) )
1177	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1178	if( mod(icount-1,ichim).eq.0. ) then
1179
1180	print *, "We enter in the chemistry ..."
1181
1182	if (moyzon_ch) then ! 2D zonally averaged chemistry
1183
1184	! Here we send zonal average fields ( corrected with cond ) from dynamics to chem. module
1185	call calchim(ngrid,ychimbar,declin,ctimestep,ztfibar,zphibar,zphisbar, &
1186	zplaybar,zplevbar,zzlaybar,zzlevbar,dycchi)
1187	else ! 3D chemistry (or 1D run)
1188	call calchim(ngrid,ychim,declin,ctimestep,pt,pphi,phisfi, &
1189	pplay,pplev,zzlay_eff,zzlev_eff,dycchi)
1190	endif ! if moyzon
1191
1192	endif
1193
1194	! iv. Surface pseudo-evaporation
1195	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1196	do ig=1,ngrid
1197	if ( (ychim(ig,1,7+nmicro)+dycchi(ig,1,7+nmicro)*ptimestep) .lt. botCH4 ) then ! +dycchi because ychim not yet updated
1198	dycevapCH4(ig) = ( -ychim(ig,1,7+nmicro)+botCH4 ) / ptimestep - dycchi(ig,1,7+nmicro)
1199	else
1200	dycevapCH4(ig) = 0.0
1201	endif
1202	enddo
1203
1204	pdq(:,1,7+nmicro) = pdq(:,1,7+nmicro) + dycevapCH4(:)*rat_mmol(7+nmicro)
1205
1206	! v. Updates and positivity check
1207	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1208	do iq=1,nkim
1209	zdqchi(:,:,iq+nmicro) = dycchi(:,:,iq)*rat_mmol(iq+nmicro) ! convert tendencies to mass mixing ratio
1210
1211	where( (pq(:,:,iq+nmicro) + ( pdq(:,:,iq+nmicro)+zdqchi(:,:,iq+nmicro) )*ptimestep ) .LT. 0.) & ! When using zonal means we set the same tendency
1212	zdqchi(:,:,iq+nmicro) = 1.e-30 - pdq(:,:,iq+nmicro) - pq(:,:,iq+nmicro)/ptimestep ! everywhere in longitude -> could lead to negs !
1213	enddo
1214
1215	pdq(:,:,:) = pdq(:,:,:) + zdqchi(:,:,:)
1216
1217	endif ! end of 'callchim'
1218
1219	! ---------------
1220	! V.3 Updates
1221	! ---------------
1222
1223	! Updating Atmospheric Mass and Tracers budgets.
1224	if(mass_redistrib) then
1225
1226	zdmassmr(:,:) = mass(:,:) * zdqevap(:,:)
1227
1228	do ig = 1, ngrid
1229	zdmassmr_col(ig)=SUM(zdmassmr(ig,:))
1230	enddo
1231
1232	call writediagfi(ngrid,"mass_evap","mass gain"," ",3,zdmassmr)
1233	call writediagfi(ngrid,"mass_evap_col","mass gain col"," ",2,zdmassmr_col)
1234	call writediagfi(ngrid,"mass","mass","kg/m2",3,mass)
1235
1236	call mass_redistribution(ngrid,nlayer,nq,ptimestep, &
1237	capcal,pplay,pplev,pt,tsurf,pq,qsurf, &
1238	pu,pv,pdt,zdtsurf,pdq,pdu,pdv,zdmassmr, &
1239	zdtmr,zdtsurfmr,zdpsrfmr,zdumr,zdvmr,zdqmr,zdqsurfmr)
1240
1241	pdq(:,:,:) = pdq(:,:,:) + zdqmr(:,:,:)
1242	dqsurf(:,:) = dqsurf(:,:) + zdqsurfmr(:,:)
1243	pdt(:,:) = pdt(:,:) + zdtmr(:,:)
1244	pdu(:,:) = pdu(:,:) + zdumr(:,:)
1245	pdv(:,:) = pdv(:,:) + zdvmr(:,:)
1246	pdpsrf(:) = pdpsrf(:) + zdpsrfmr(:)
1247	zdtsurf(:) = zdtsurf(:) + zdtsurfmr(:)
1248
1249	endif
1250
1251	! -----------------------------
1252	! V.4. Surface Tracer Update
1253	! -----------------------------
1254
1255	qsurf(:,:) = qsurf(:,:) + ptimestep*dqsurf(:,:)
1256
1257	! Add qsurf to qsurf_hist, which is what we save in diagfi.nc. At the same time, we set the water
1258	! content of ocean gridpoints back to zero, in order to avoid rounding errors in vdifc, rain.
1259	qsurf_hist(:,:) = qsurf(:,:)
1260
1261	endif! end of if 'tracer'
1262
1263
1264	!------------------------------------------------
1265	! VI. Surface and sub-surface soil temperature
1266	!------------------------------------------------
1267
1268
1269	! Increment surface temperature
1270
1271	tsurf(:)=tsurf(:)+ptimestep*zdtsurf(:)
1272
1273	! Compute soil temperatures and subsurface heat flux.
1274	if (callsoil) then
1275	call soil(ngrid,nsoilmx,.false.,lastcall,inertiedat, &
1276	ptimestep,tsurf,tsoil,capcal,fluxgrd)
1277	endif
1278
1279
1280	! Test energy conservation
1281	if(enertest)then
1282	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf(:)/totarea_planet,dEtots)
1283	if (is_master) print*,'Surface energy change =',dEtots,' W m-2'
1284	endif
1285
1286
1287	!---------------------------------------------------
1288	! VII. Perform diagnostics and write output files
1289	!---------------------------------------------------
1290
1291	! Note : For output only: the actual model integration is performed in the dynamics.
1292
1293	! Temperature, zonal and meridional winds.
1294	zt(:,:) = pt(:,:) + pdt(:,:)*ptimestep
1295	zu(:,:) = pu(:,:) + pdu(:,:)*ptimestep
1296	zv(:,:) = pv(:,:) + pdv(:,:)*ptimestep
1297
1298	! Diagnostic.
1299	zdtdyn(:,:) = (pt(:,:)-ztprevious(:,:)) / ptimestep
1300	ztprevious(:,:) = zt(:,:)
1301
1302	zdudyn(:,:) = (pu(:,:)-zuprevious(:,:)) / ptimestep
1303	zuprevious(:,:) = zu(:,:)
1304
1305	if(firstcall)then
1306	zdtdyn(:,:)=0.0
1307	zdudyn(:,:)=0.0
1308	endif
1309
1310	! Horizotal wind
1311	zhorizwind(:,:) = sqrt( zu(:,:)zu(:,:) + zv(:,:)zv(:,:) )
1312
1313	! Dynamical heating diagnostic.
1314	do ig=1,ngrid
1315	fluxdyn(ig)= SUM(zdtdyn(ig,:) mass(ig,:))cpp
1316	enddo
1317
1318	! Tracers.
1319	zq(:,:,:) = pq(:,:,:) + pdq(:,:,:)*ptimestep
1320
1321	! Surface pressure.
1322	ps(:) = pplev(:,1) + pdpsrf(:)*ptimestep
1323
1324
1325
1326	! Surface and soil temperature information
1327	call planetwide_sumval(cell_area(:)*tsurf(:)/totarea_planet,Ts1)
1328	call planetwide_minval(tsurf(:),Ts2)
1329	call planetwide_maxval(tsurf(:),Ts3)
1330	if(callsoil)then
1331	TsS = SUM(cell_area(:)*tsoil(:,nsoilmx))/totarea ! mean temperature at bottom soil layer
1332	if (is_master) then
1333	print*,' ave[Tsurf] min[Tsurf] max[Tsurf] ave[Tdeep]'
1334	print*,Ts1,Ts2,Ts3,TsS
1335	end if
1336	else
1337	if (is_master) then
1338	print*,' ave[Tsurf] min[Tsurf] max[Tsurf]'
1339	print*,Ts1,Ts2,Ts3
1340	endif
1341	end if
1342
1343
1344	! Check the energy balance of the simulation during the run
1345	if(corrk)then
1346
1347	call planetwide_sumval(cell_area(:)*fluxtop_dn(:)/totarea_planet,ISR)
1348	call planetwide_sumval(cell_area(:)*fluxabs_sw(:)/totarea_planet,ASR)
1349	call planetwide_sumval(cell_area(:)*fluxtop_lw(:)/totarea_planet,OLR)
1350	call planetwide_sumval(cell_area(:)*fluxgrd(:)/totarea_planet,GND)
1351	call planetwide_sumval(cell_area(:)*fluxdyn(:)/totarea_planet,DYN)
1352	do ig=1,ngrid
1353	if(fluxtop_dn(ig).lt.0.0)then
1354	print*,'fluxtop_dn has gone crazy'
1355	print*,'fluxtop_dn=',fluxtop_dn(ig)
1356	print*,'temp= ',pt(ig,:)
1357	print*,'pplay= ',pplay(ig,:)
1358	call abort
1359	endif
1360	end do
1361
1362	if(ngrid.eq.1)then
1363	DYN=0.0
1364	endif
1365
1366	if (is_master) then
1367	print*,' ISR ASR OLR GND DYN [W m^-2]'
1368	print*, ISR,ASR,OLR,GND,DYN
1369	endif
1370
1371	if(enertest .and. is_master)then
1372	print*,'SW flux/heating difference SW++ - ASR = ',dEtotSW+dEtotsSW-ASR,' W m-2'
1373	print*,'LW flux/heating difference LW++ - OLR = ',dEtotLW+dEtotsLW+OLR,' W m-2'
1374	print*,'LW energy balance LW++ + ASR = ',dEtotLW+dEtotsLW+ASR,' W m-2'
1375	endif
1376
1377	if(meanOLR .and. is_master)then
1378	if((ngrid.gt.1) .or. (mod(icount-1,ecritphy).eq.0))then
1379	! to record global radiative balance
1380	open(92,file="rad_bal.out",form='formatted',position='append')
1381	write(92,*) zday,ISR,ASR,OLR
1382	close(92)
1383	open(93,file="tem_bal.out",form='formatted',position='append')
1384	if(callsoil)then
1385	write(93,*) zday,Ts1,Ts2,Ts3,TsS
1386	else
1387	write(93,*) zday,Ts1,Ts2,Ts3
1388	endif
1389	close(93)
1390	endif
1391	endif
1392
1393	endif ! end of 'corrk'
1394
1395
1396	! Diagnostic to test radiative-convective timescales in code.
1397	if(testradtimes)then
1398	open(38,file="tau_phys.out",form='formatted',position='append')
1399	ig=1
1400	do l=1,nlayer
1401	write(38,*) -1./pdt(ig,l),pt(ig,l),pplay(ig,l)
1402	enddo
1403	close(38)
1404	print*,'As testradtimes enabled,'
1405	print*,'exiting physics on first call'
1406	call abort
1407	endif
1408
1409
1410	if (is_master) print,'--> Ls =',zls180./pi
1411
1412
1413	!----------------------------------------------------------------------
1414	! Writing NetCDF file "RESTARTFI" at the end of the run
1415	!----------------------------------------------------------------------
1416
1417	! Note: 'restartfi' is stored just before dynamics are stored
1418	! in 'restart'. Between now and the writting of 'restart',
1419	! there will have been the itau=itau+1 instruction and
1420	! a reset of 'time' (lastacll = .true. when itau+1= itaufin)
1421	! thus we store for time=time+dtvr
1422
1423
1424
1425	if(lastcall) then
1426	ztime_fin = ptime + ptimestep/(float(iphysiq)*daysec)
1427
1428	if (ngrid.ne.1) then
1429	write(,)'PHYSIQ: for physdem ztime_fin =',ztime_fin
1430
1431	call physdem1("restartfi.nc",nsoilmx,ngrid,nlayer,nq, &
1432	ptimestep,ztime_fin, &
1433	tsurf,tsoil,emis,q2,qsurf_hist,tankCH4)
1434	endif
1435	endif ! end of 'lastcall'
1436
1437
1438	!-----------------------------------------------------------------------------------------------------
1439	! OUTPUT in netcdf file "DIAGFI.NC", containing any variable for diagnostic
1440	!
1441	! Note 1 : output with period "ecritphy", set in "run.def"
1442	!
1443	! Note 2 : writediagfi can also be called from any other subroutine for any variable,
1444	! but its preferable to keep all the calls in one place ...
1445	!-----------------------------------------------------------------------------------------------------
1446
1447
1448	call writediagfi(ngrid,"Ls","solar longitude","deg",0,zls*180./pi)
1449	call writediagfi(ngrid,"Lss","sub solar longitude","deg",0,zlss*180./pi)
1450	call writediagfi(ngrid,"RA","right ascension","deg",0,right_ascen*180./pi)
1451	call writediagfi(ngrid,"Declin","solar declination","deg",0,declin*180./pi)
1452	call writediagfi(ngrid,"tsurf","Surface temperature","K",2,tsurf)
1453	call writediagfi(ngrid,"ps","Surface pressure","Pa",2,ps)
1454	call writediagfi(ngrid,"temp","temperature","K",3,zt)
1455	call writediagfi(ngrid,"teta","potential temperature","K",3,zh)
1456	call writediagfi(ngrid,"u","Zonal wind","m.s-1",3,zu)
1457	call writediagfi(ngrid,"v","Meridional wind","m.s-1",3,zv)
1458	call writediagfi(ngrid,"w","Vertical wind","m.s-1",3,pw)
1459	call writediagfi(ngrid,"p","Pressure","Pa",3,pplay)
1460
1461	! Subsurface temperatures
1462	! call writediagsoil(ngrid,"tsurf","Surface temperature","K",2,tsurf)
1463	! call writediagsoil(ngrid,"temp","temperature","K",3,tsoil)
1464
1465
1466
1467	! Total energy balance diagnostics
1468	if(callrad.and.(.not.newtonian))then
1469
1470	!call writediagfi(ngrid,"ALB","Surface albedo"," ",2,albedo_equivalent)
1471	call writediagfi(ngrid,"ISR","incoming stellar rad.","W m-2",2,fluxtop_dn)
1472	call writediagfi(ngrid,"ASR","absorbed stellar rad.","W m-2",2,fluxabs_sw)
1473	call writediagfi(ngrid,"OLR","outgoing longwave rad.","W m-2",2,fluxtop_lw)
1474
1475	! call writediagfi(ngrid,"ASRcs","absorbed stellar rad (cs).","W m-2",2,fluxabs_sw1)
1476	! call writediagfi(ngrid,"OLRcs","outgoing longwave rad (cs).","W m-2",2,fluxtop_lw1)
1477	! call writediagfi(ngrid,"fluxsurfsw","sw surface flux.","W m-2",2,fluxsurf_sw)
1478	! call writediagfi(ngrid,"fluxsurflw","lw back radiation.","W m-2",2,fluxsurf_lw)
1479	! call writediagfi(ngrid,"fluxsurfswcs","sw surface flux (cs).","W m-2",2,fluxsurf_sw1)
1480	! call writediagfi(ngrid,"fluxsurflwcs","lw back radiation (cs).","W m-2",2,fluxsurf_lw1)
1481
1482
1483	call writediagfi(ngrid,"GND","heat flux from ground","W m-2",2,fluxgrd)
1484
1485	call writediagfi(ngrid,"DYN","dynamical heat input","W m-2",2,fluxdyn)
1486
1487	endif ! end of 'callrad'
1488
1489	if(enertest) then
1490
1491	if (calldifv) then
1492
1493	call writediagfi(ngrid,"q2","turbulent kinetic energy","J.kg^-1",3,q2)
1494	call writediagfi(ngrid,"sensibFlux","sensible heat flux","w.m^-2",2,sensibFlux)
1495
1496	! call writediagfi(ngrid,"dEzdiff","turbulent diffusion heating (-sensible flux)","w.m^-2",3,dEzdiff)
1497	! call writediagfi(ngrid,"dEdiff","integrated turbulent diffusion heating (-sensible flux)","w.m^-2",2,dEdiff)
1498	! call writediagfi(ngrid,"dEdiffs","In TurbDiff (correc rad+latent heat) surf nrj change","w.m^-2",2,dEdiffs)
1499
1500	endif
1501
1502	if (corrk) then
1503	call writediagfi(ngrid,"dEzradsw","radiative heating","w.m^-2",3,dEzradsw)
1504	call writediagfi(ngrid,"dEzradlw","radiative heating","w.m^-2",3,dEzradlw)
1505	endif
1506
1507	endif ! end of 'enertest'
1508
1509	! Temporary inclusions for winds diagnostics.
1510	call writediagfi(ngrid,"zdudif","Turbdiff tend. zon. wind","m s-2",3,zdudif)
1511	call writediagfi(ngrid,"zdudyn","Dyn. tend. zon. wind","m s-2",3,zdudyn)
1512
1513	! Temporary inclusions for heating diagnostics.
1514	call writediagfi(ngrid,"zdtsw","SW heating","T s-1",3,zdtsw)
1515	call writediagfi(ngrid,"zdtlw","LW heating","T s-1",3,zdtlw)
1516	call writediagfi(ngrid,"dtrad","radiative heating","K s-1",3,dtrad)
1517	call writediagfi(ngrid,"zdtdyn","Dyn. heating","T s-1",3,zdtdyn)
1518
1519	! For Debugging.
1520	call writediagfi(ngrid,'pphi','Geopotential',' ',3,pphi)
1521
1522
1523	! Output tracers.
1524	if (tracer) then
1525
1526	if (callmufi) then
1527	! Microphysical tracers are expressed in unit/m3.
1528	! convert X.kg-1 --> X.m-3 (whereas for optics was -> X.m-2)
1529	i2e(:,:) = ( pplev(:,1:nlayer)-pplev(:,2:nlayer+1) ) / gzlat(:,1:nlayer) /(zzlev(:,2:nlayer+1)-zzlev(:,1:nlayer))
1530
1531	#ifdef USE_QTEST
1532	! Microphysical tracers passed through dyn+phys(except mufi)
1533	call writediagfi(ngrid,"mu_m0as_dp","Dynphys only spherical mode 0th order moment",'m-3',3,zq(:,:,micro_indx(1))*i2e)
1534	call writediagfi(ngrid,"mu_m3as_dp","Dynphys only spherical mode 3rd order moment",'m3/m3',3,zq(:,:,micro_indx(2))*i2e)
1535	call writediagfi(ngrid,"mu_m0af_dp","Dynphys only fractal mode 0th order moment",'m-3',3,zq(:,:,micro_indx(3))*i2e)
1536	call writediagfi(ngrid,"mu_m3af_dp","Dynphys only fractal mode 3rd order moment",'m3/m3',3,zq(:,:,micro_indx(4))*i2e)
1537	! Microphysical tracers passed through mufi only
1538	call writediagfi(ngrid,"mu_m0as_mo","Mufi only spherical mode 0th order moment",'m-3',3,tpq(:,:,micro_indx(1))*i2e)
1539	call writediagfi(ngrid,"mu_m3as_mo","Mufi only spherical mode 3rd order moment",'m3/m3',3,tpq(:,:,micro_indx(2))*i2e)
1540	call writediagfi(ngrid,"mu_m0af_mo","Mufi only fractal mode 0th order moment",'m-3',3,tpq(:,:,micro_indx(3))*i2e)
1541	call writediagfi(ngrid,"mu_m3af_mo","Mufi only fractal mode 3rd order moment",'m3/m3',3,tpq(:,:,micro_indx(4))*i2e)
1542	#else
1543	call writediagfi(ngrid,"mu_m0as","Spherical mode 0th order moment",'m-3',3,zq(:,:,micro_indx(1))*i2e)
1544	call writediagfi(ngrid,"mu_m3as","Spherical mode 3rd order moment",'m3/m3',3,zq(:,:,micro_indx(2))*i2e)
1545	call writediagfi(ngrid,"mu_m0af","Fractal mode 0th order moment",'m-3',3,zq(:,:,micro_indx(3))*i2e)
1546	call writediagfi(ngrid,"mu_m3af","Fractal mode 3rd order moment",'m3/m3',3,zq(:,:,micro_indx(4))*i2e)
1547	#endif
1548
1549	! Microphysical diagnostics
1550	call writediagfi(ngrid,"mmd_aer_prec","Total aerosols precipitations",'m',2,mmd_aer_prec)
1551	call writediagfi(ngrid,"mmd_aer_s_flux","Spherical aerosols sedimentation flux",'kg.m-2.s-1',3,mmd_aer_s_flux)
1552	call writediagfi(ngrid,"mmd_aer_f_flux","Fractal aerosols sedimentation flux",'kg.m-2.s-1',3,mmd_aer_f_flux)
1553	call writediagfi(ngrid,"mmd_rc_sph","Spherical mode caracteristic radius",'m',3,mmd_rc_sph)
1554	call writediagfi(ngrid,"mmd_rc_fra","Fractal mode caracteristic radius",'m',3,mmd_rc_fra)
1555
1556	endif ! end of 'callmufi'
1557
1558	! Chemical tracers
1559	if (callchim) then
1560	do iq=1,nkim
1561	call writediagfi(ngrid,cnames(iq),cnames(iq),'mol/mol',3,zq(:,:,iq+nmicro)/rat_mmol(iq+nmicro))
1562	enddo
1563	call writediagfi(ngrid,"evapCH4","Surface CH4 pseudo-evaporation rate",'mol/mol/s',2,dycevapCH4)
1564	endif
1565
1566	endif ! end of 'tracer'
1567
1568	! XIOS outputs
1569	#ifdef CPP_XIOS
1570	! Send fields to XIOS: (NB these fields must also be defined as
1571	! <field id="..." /> in context_lmdz_physics.xml to be correctly used)
1572	CALL send_xios_field("ls",zls*180./pi)
1573	CALL send_xios_field("lss",zlss*180./pi)
1574	CALL send_xios_field("RA",right_ascen*180./pi)
1575	CALL send_xios_field("Declin",declin*180./pi)
1576
1577	! Total energy balance diagnostics
1578	if (callrad.and.(.not.newtonian)) then
1579	CALL send_xios_field("ISR_TOA",fluxtop_dn)
1580	CALL send_xios_field("OLR_TOA",fluxtop_lw)
1581	endif
1582
1583	CALL send_xios_field("area",cell_area)
1584	CALL send_xios_field("pphi",pphi)
1585	CALL send_xios_field("pphis",phisfi)
1586
1587	CALL send_xios_field("ps",ps)
1588	CALL send_xios_field("tsurf",tsurf)
1589
1590	if(enertest) then
1591	if (calldifv) then
1592	CALL send_xios_field("sensibFlux",sensibFlux)
1593	endif
1594	endif
1595
1596	CALL send_xios_field("temp",zt)
1597	CALL send_xios_field("teta",zh)
1598	CALL send_xios_field("u",zu)
1599	CALL send_xios_field("v",zv)
1600	CALL send_xios_field("w",pw)
1601	CALL send_xios_field("p",pplay)
1602
1603	! Winds diagnostics.
1604	CALL send_xios_field("dudif",zdudif)
1605	CALL send_xios_field("dudyn",zdudyn)
1606
1607	CALL send_xios_field("horizwind",zhorizwind)
1608
1609	! Heating diagnostics.
1610	CALL send_xios_field("dtsw",zdtsw)
1611	CALL send_xios_field("dtlw",zdtlw)
1612	CALL send_xios_field("dtrad",dtrad)
1613	CALL send_xios_field("dtdyn",zdtdyn)
1614	CALL send_xios_field("dtdif",zdtdif)
1615
1616	! Chemical tracers
1617	if (callchim) then
1618
1619	! Advected fields
1620	do iq=1,nkim
1621	CALL send_xios_field(trim(cnames(iq)),zq(:,:,iq+nmicro)/rat_mmol(iq+nmicro)) ! kg/kg -> mol/mol
1622	enddo
1623
1624	! Upper chemistry fields
1625	do iq=1,nkim
1626	CALL send_xios_field(trim(cnames(iq))//"_up",ykim_up(iq,:,:)) ! mol/mol
1627	enddo
1628
1629	! Append fields in ykim_tot for output on the total vertical grid (0->1300km)
1630	do iq=1,nkim
1631
1632	! GCM levels
1633	do l=1,nlayer
1634	ykim_tot(iq,:,l) = zq(:,l,iq+nmicro)/rat_mmol(iq+nmicro)
1635	enddo
1636	! Upper levels
1637	do l=1,nlaykim_up
1638	ykim_tot(iq,:,nlayer+l) = ykim_up(iq,:,l)
1639	enddo
1640
1641	CALL send_xios_field(trim(cnames(iq))//"_tot",ykim_tot(iq,:,:)) ! mol/mol
1642
1643	enddo
1644
1645	! Condensation tendencies ( mol/mol/s )
1646	CALL send_xios_field("dqcond_CH4",dyccond(:,:,7+nmicro))
1647	CALL send_xios_field("dqcond_C2H2",dyccond(:,:,10+nmicro))
1648	CALL send_xios_field("dqcond_C2H4",dyccond(:,:,12+nmicro))
1649	CALL send_xios_field("dqcond_C2H6",dyccond(:,:,14+nmicro))
1650	CALL send_xios_field("dqcond_C3H6",dyccond(:,:,17+nmicro))
1651	CALL send_xios_field("dqcond_C4H4",dyccond(:,:,21+nmicro))
1652	CALL send_xios_field("dqcond_CH3CCH",dyccond(:,:,24+nmicro))
1653	CALL send_xios_field("dqcond_C3H8",dyccond(:,:,25+nmicro))
1654	CALL send_xios_field("dqcond_C4H2",dyccond(:,:,26+nmicro))
1655	CALL send_xios_field("dqcond_C4H6",dyccond(:,:,27+nmicro))
1656	CALL send_xios_field("dqcond_C4H10",dyccond(:,:,28+nmicro))
1657	CALL send_xios_field("dqcond_AC6H6",dyccond(:,:,29+nmicro))
1658	CALL send_xios_field("dqcond_HCN",dyccond(:,:,36+nmicro))
1659	CALL send_xios_field("dqcond_CH3CN",dyccond(:,:,40+nmicro))
1660	CALL send_xios_field("dqcond_HC3N",dyccond(:,:,42+nmicro))
1661	CALL send_xios_field("dqcond_NCCN",dyccond(:,:,43+nmicro))
1662	CALL send_xios_field("dqcond_C4N2",dyccond(:,:,44+nmicro))
1663
1664	! Pseudo-evaporation flux (mol/mol/s)
1665	CALL send_xios_field("evapCH4",dycevapCH4(:))
1666
1667	endif ! of 'if callchim'
1668
1669	! Microphysical tracers
1670	if (callmufi) then
1671	CALL send_xios_field("mu_m0as",zq(:,:,micro_indx(1))*i2e)
1672	CALL send_xios_field("mu_m3as",zq(:,:,micro_indx(2))*i2e)
1673	CALL send_xios_field("mu_m0af",zq(:,:,micro_indx(3))*i2e)
1674	CALL send_xios_field("mu_m3af",zq(:,:,micro_indx(4))*i2e)
1675	endif
1676
1677	if (lastcall.and.is_omp_master) then
1678	write(,) "physiq: call xios_context_finalize"
1679	call xios_context_finalize
1680	endif
1681	#endif
1682
1683	icount=icount+1
1684
1685	end subroutine physiq
1686
1687	end module physiq_mod

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