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physiq_mod.F90 @ 2095

Last change on this file since 2095 was 2050, checked in by jvatant, 7 years ago

Major radiative transfer contribution : Add the 'corrk_recombin' option that allows to use
correlated-k for single species instead of pre-mix and enables more flexiblity for variable species.
-> Algorithm inspired from Lacis and Oinas 1991 and Amundsen et al 2016

+ Added 'recombin_corrk.F90' - Important improvements in 'sugas_corrk.90' and 'callcork.F90'

Must have the desired variable species as tracers -> TBD : Enable to force composition even if no tracers

To have decent CPU time recombining is not done on all gridpoints and wavelenghts but we calculate a gasi/v_recomb variable on the reference corrk-k T,P grid (only for T,P values who match the atmospheric conditions ) which is then processed as a standard pre-mix in optci/v routines, but updated every time tracers on the ref P grid have varied > 1%.

READ CAREFULY :

In case of 'corrk_recombin', the variable L_NREFVAR doesn't have the same meaning as before and doesn't stand for the different mixing ratios but the different species.
Input corr-k should be found in corrkdir within 'corrk_gcm_IR/VI_XXX.dat' and can contain a 'fixed' specie ( compulsory if you include self-broadening ) that MUST have been created with correct mixing ratios, or a variable specie for which mixing ratio MUST have been set to 1 ( no self-broadening then, assume it's a trace sepecie ) -> You can't neither have CIA of variable species included upstream in the corr-k

Property svn:executable set to *
Property svn:mergeinfo set to
/trunk/LMDZ.GENERIC/libf/phystd/physiq_mod.F90 merged eligible

File size: 70.0 KB

Line
1	module physiq_mod
2
3	implicit none
4
5	contains
6
7	subroutine physiq(ngrid,nlayer,nq, &
8	nametrac, &
9	firstcall,lastcall, &
10	pday,ptime,ptimestep, &
11	pplev,pplay,pphi, &
12	pu,pv,pt,pq, &
13	flxw, &
14	pdu,pdv,pdt,pdq,pdpsrf)
15
16	use radinc_h, only : L_NSPECTI,L_NSPECTV
17	use radcommon_h, only: sigma, gzlat, gzlat_ig, Cmk, grav, BWNV
18	use surfdat_h, only: phisfi, zmea, zstd, zsig, zgam, zthe
19	use comchem_h, only: nkim, cnames, nlaykim_up, ykim_up, ykim_tot, botCH4
20	use comdiurn_h, only: coslat, sinlat, coslon, sinlon
21	use comsaison_h, only: mu0, fract, dist_star, declin, right_ascen
22	use comsoil_h, only: nsoilmx, layer, mlayer, inertiedat
23	use datafile_mod, only: datadir, corrkdir, banddir
24	use geometry_mod, only: latitude, longitude, cell_area
25	USE comgeomfi_h, only: totarea, totarea_planet
26	USE tracer_h
27	use time_phylmdz_mod, only: ecritphy, iphysiq, nday
28	use phyetat0_mod, only: phyetat0
29	use phyredem, only: physdem0, physdem1
30	use planetwide_mod, only: planetwide_minval,planetwide_maxval,planetwide_sumval
31	use mod_phys_lmdz_para, only : is_master
32	use planete_mod, only: apoastr, periastr, year_day, peri_day, &
33	obliquit, nres, z0
34	use comcstfi_mod, only: pi, g, rcp, r, rad, mugaz, cpp
35	use time_phylmdz_mod, only: daysec
36	use logic_mod, only: moyzon_ch
37	use moyzon_mod, only: zphibar, zphisbar, zplevbar, zplaybar, &
38	zzlevbar, zzlaybar, ztfibar, zqfibar
39	use callkeys_mod
40	use vertical_layers_mod, only: presnivs, pseudoalt
41	use ioipsl_getin_p_mod, only: getin_p
42	use mod_phys_lmdz_omp_data, ONLY: is_omp_master
43	#ifdef CPP_XIOS
44	use xios_output_mod, only: initialize_xios_output, &
45	update_xios_timestep, &
46	send_xios_field
47	use wxios, only: wxios_context_init, xios_context_finalize
48	#endif
49	use MMP_OPTICS
50	use muphy_diag
51	implicit none
52
53
54	!==================================================================
55	!
56	! Purpose
57	! -------
58	! Central subroutine for all the physics parameterisations in the
59	! universal model. Originally adapted from the Mars LMDZ model.
60	!
61	! The model can be run without or with tracer transport
62	! depending on the value of "tracer" in file "callphys.def".
63	!
64	!
65	! It includes:
66	!
67	! I. Initialization :
68	! I.1 Firstcall initializations.
69	! I.2 Initialization for every call to physiq.
70	!
71	! II. Compute radiative transfer tendencies (longwave and shortwave) :
72	! II.a Option 1 : Call correlated-k radiative transfer scheme.
73	! II.b Option 2 : Call Newtonian cooling scheme.
74	! II.c Option 3 : Atmosphere has no radiative effect.
75	!
76	! III. Vertical diffusion (turbulent mixing) :
77	!
78	! IV. Dry Convective adjustment :
79	!
80	! V. Tracers
81	! V.1. Microphysics
82	! V.2. Chemistry
83	! V.3. Updates (pressure variations, surface budget).
84	! V.4. Surface Tracer Update.
85	!
86	! VI. Surface and sub-surface soil temperature.
87	!
88	! VII. Perform diagnostics and write output files.
89	!
90	!
91	! arguments
92	! ---------
93	!
94	! INPUT
95	! -----
96	!
97	! ngrid Size of the horizontal grid.
98	! nlayer Number of vertical layers.
99	! nq Number of advected fields.
100	! nametrac Name of corresponding advected fields.
101	!
102	! firstcall True at the first call.
103	! lastcall True at the last call.
104	!
105	! pday Number of days counted from the North. Spring equinoxe.
106	! ptime Universal time (0<ptime<1): ptime=0.5 at 12:00 UT.
107	! ptimestep timestep (s).
108	!
109	! pplay(ngrid,nlayer) Pressure at the middle of the layers (Pa).
110	! pplev(ngrid,nlayer+1) Intermediate pressure levels (Pa).
111	! pphi(ngrid,nlayer) Geopotential at the middle of the layers (m2.s-2).
112	!
113	! pu(ngrid,nlayer) u, zonal component of the wind (ms-1).
114	! pv(ngrid,nlayer) v, meridional component of the wind (ms-1).
115	!
116	! pt(ngrid,nlayer) Temperature (K).
117	!
118	! pq(ngrid,nlayer,nq) Advected fields.
119	!
120	! pudyn(ngrid,nlayer) \
121	! pvdyn(ngrid,nlayer) \ Dynamical temporal derivative for the
122	! ptdyn(ngrid,nlayer) / corresponding variables.
123	! pqdyn(ngrid,nlayer,nq) /
124	! flxw(ngrid,nlayer) vertical mass flux (kg/s) at layer lower boundary
125	!
126	! OUTPUT
127	! ------
128	!
129	! pdu(ngrid,nlayer) \
130	! pdv(ngrid,nlayer) \ Temporal derivative of the corresponding
131	! pdt(ngrid,nlayer) / variables due to physical processes.
132	! pdq(ngrid,nlayer) /
133	! pdpsrf(ngrid) /
134	!
135	!
136	! Authors
137	! -------
138	! Frederic Hourdin 15/10/93
139	! Francois Forget 1994
140	! Christophe Hourdin 02/1997
141	! Subroutine completely rewritten by F. Forget (01/2000)
142	! Water ice clouds: Franck Montmessin (update 06/2003)
143	! Radiatively active tracers: J.-B. Madeleine (10/2008-06/2009)
144	! New correlated-k radiative scheme: R. Wordsworth (2009)
145	! Many specifically Martian subroutines removed: R. Wordsworth (2009)
146	! Improved water cycle: R. Wordsworth / B. Charnay (2010)
147	! To F90: R. Wordsworth (2010)
148	! New turbulent diffusion scheme: J. Leconte (2012)
149	! Loops converted to F90 matrix format: J. Leconte (2012)
150	! No more ngridmx/nqmx, F90 commons and adaptation to parallel: A. Spiga (2012)
151	! Purge of the code : M. Turbet (2015)
152	! Fork for Titan : J. Vatant d'Ollone (2017)
153	! + clean of all too-generic (ocean, water, co2 ...) routines
154	! + Titan's chemistry
155	! Microphysical moment model - J.Burgalat / J.Vatant d'Ollone (2017-2018)
156	!============================================================================================
157
158
159	! 0. Declarations :
160	! ------------------
161
162	include "netcdf.inc"
163
164	! Arguments :
165	! -----------
166
167	! INPUTS:
168	! -------
169
170
171	integer,intent(in) :: ngrid ! Number of atmospheric columns.
172	integer,intent(in) :: nlayer ! Number of atmospheric layers.
173	integer,intent(in) :: nq ! Number of tracers.
174	character*30,intent(in) :: nametrac(nq) ! Names of the tracers taken from dynamics.
175
176	logical,intent(in) :: firstcall ! Signals first call to physics.
177	logical,intent(in) :: lastcall ! Signals last call to physics.
178
179	real,intent(in) :: pday ! Number of elapsed sols since reference Ls=0.
180	real,intent(in) :: ptime ! "Universal time", given as fraction of sol (e.g.: 0.5 for noon).
181	real,intent(in) :: ptimestep ! Physics timestep (s).
182	real,intent(in) :: pplev(ngrid,nlayer+1) ! Inter-layer pressure (Pa).
183	real,intent(in) :: pplay(ngrid,nlayer) ! Mid-layer pressure (Pa).
184	real,intent(in) :: pphi(ngrid,nlayer) ! Geopotential at mid-layer (m2s-2).
185	real,intent(in) :: pu(ngrid,nlayer) ! Zonal wind component (m/s).
186	real,intent(in) :: pv(ngrid,nlayer) ! Meridional wind component (m/s).
187	real,intent(in) :: pt(ngrid,nlayer) ! Temperature (K).
188	real,intent(in) :: pq(ngrid,nlayer,nq) ! Tracers (kg/kg_of_air).
189	real,intent(in) :: flxw(ngrid,nlayer) ! Vertical mass flux (ks/s) at lower boundary of layer
190
191	! OUTPUTS:
192	! --------
193
194	! Physical tendencies :
195
196	real,intent(out) :: pdu(ngrid,nlayer) ! Zonal wind tendencies (m/s/s).
197	real,intent(out) :: pdv(ngrid,nlayer) ! Meridional wind tendencies (m/s/s).
198	real,intent(out) :: pdt(ngrid,nlayer) ! Temperature tendencies (K/s).
199	real,intent(out) :: pdq(ngrid,nlayer,nq) ! Tracer tendencies (kg/kg_of_air/s).
200	real,intent(out) :: pdpsrf(ngrid) ! Surface pressure tendency (Pa/s).
201
202	! Local saved variables:
203	! ----------------------
204
205	integer,save :: day_ini ! Initial date of the run (sol since Ls=0).
206	integer,save :: icount ! Counter of calls to physiq during the run.
207	!$OMP THREADPRIVATE(day_ini,icount)
208
209	real, dimension(:),allocatable,save :: tsurf ! Surface temperature (K).
210	real, dimension(:,:),allocatable,save :: tsoil ! Sub-surface temperatures (K).
211	real, dimension(:,:),allocatable,save :: albedo ! Surface Spectral albedo. By MT2015.
212	real, dimension(:),allocatable,save :: albedo_equivalent ! Spectral Mean albedo.
213
214	!$OMP THREADPRIVATE(tsurf,tsoil,albedo,albedo_equivalent)
215
216	real,dimension(:),allocatable,save :: albedo_bareground ! Bare Ground Albedo. By MT 2015.
217
218	!$OMP THREADPRIVATE(albedo_bareground)
219
220	real,dimension(:),allocatable,save :: emis ! Thermal IR surface emissivity.
221	real,dimension(:,:),allocatable,save :: dtrad ! Net atmospheric radiative heating rate (K.s-1).
222	real,dimension(:),allocatable,save :: fluxrad_sky ! Radiative flux from sky absorbed by surface (W.m-2).
223	real,dimension(:),allocatable,save :: fluxrad ! Net radiative surface flux (W.m-2).
224	real,dimension(:),allocatable,save :: capcal ! Surface heat capacity (J m-2 K-1).
225	real,dimension(:),allocatable,save :: fluxgrd ! Surface conduction flux (W.m-2).
226	real,dimension(:,:),allocatable,save :: qsurf ! Tracer on surface (e.g. kg.m-2).
227	real,dimension(:,:),allocatable,save :: q2 ! Turbulent Kinetic Energy.
228
229	!$OMP THREADPRIVATE(emis,dtrad,fluxrad_sky,fluxrad,capcal,fluxgrd,qsurf,q2)
230
231
232	! Local variables :
233	! -----------------
234
235	real zh(ngrid,nlayer) ! Potential temperature (K).
236	real pw(ngrid,nlayer) ! Vertical velocity (m/s). (NOTE : >0 WHEN DOWNWARDS !!)
237
238	integer l,ig,ierr,iq,nw,isoil
239
240	! FOR DIAGNOSTIC :
241
242	real,dimension(:),allocatable,save :: fluxsurf_lw ! Incident Long Wave (IR) surface flux (W.m-2).
243	real,dimension(:),allocatable,save :: fluxsurf_sw ! Incident Short Wave (stellar) surface flux (W.m-2).
244	real,dimension(:),allocatable,save :: fluxsurfabs_sw ! Absorbed Short Wave (stellar) flux by the surface (W.m-2).
245	real,dimension(:),allocatable,save :: fluxtop_lw ! Outgoing LW (IR) flux to space (W.m-2).
246	real,dimension(:),allocatable,save :: fluxabs_sw ! Absorbed SW (stellar) flux (W.m-2).
247	real,dimension(:),allocatable,save :: fluxtop_dn ! Incoming SW (stellar) radiation at the top of the atmosphere (W.m-2).
248	real,dimension(:),allocatable,save :: fluxdyn ! Horizontal heat transport by dynamics (W.m-2).
249	real,dimension(:,:),allocatable,save :: OLR_nu ! Outgoing LW radiation in each band (Normalized to the band width (W/m2/cm-1)).
250	real,dimension(:,:),allocatable,save :: OSR_nu ! Outgoing SW radiation in each band (Normalized to the band width (W/m2/cm-1)).
251	real,dimension(:,:),allocatable,save :: zdtlw ! LW heating tendencies (K/s).
252	real,dimension(:,:),allocatable,save :: zdtsw ! SW heating tendencies (K/s).
253	real,dimension(:),allocatable,save :: sensibFlux ! Turbulent flux given by the atmosphere to the surface (W.m-2).
254
255	!$OMP THREADPRIVATE(fluxsurf_lw,fluxsurf_sw,fluxsurfabs_sw,fluxtop_lw,fluxabs_sw,fluxtop_dn,fluxdyn,OLR_nu,OSR_nu,&
256
257	!$OMP zdtlw,zdtsw,sensibFlux)
258
259	real zls ! Solar longitude (radians).
260	real zlss ! Sub solar point longitude (radians).
261	real zday ! Date (time since Ls=0, calculated in sols).
262	real zzlay(ngrid,nlayer) ! Altitude at the middle of the atmospheric layers.
263	real zzlev(ngrid,nlayer+1) ! Altitude at the atmospheric layer boundaries.
264
265	! TENDENCIES due to various processes :
266
267	! For Surface Temperature : (K/s)
268	real zdtsurf(ngrid) ! Cumulated tendencies.
269	real zdtsurfmr(ngrid) ! Mass_redistribution routine.
270	real zdtsdif(ngrid) ! Turbdiff/vdifc routines.
271
272	! For Atmospheric Temperatures : (K/s)
273	real zdtdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
274	real zdtmr(ngrid,nlayer) ! Mass_redistribution routine.
275	real zdtsw1(ngrid,nlayer), zdtlw1(ngrid,nlayer) ! Callcorrk routine.
276
277	! For Surface Tracers : (kg/m2/s)
278	real dqsurf(ngrid,nq) ! Cumulated tendencies.
279	real zdqsdif(ngrid,nq) ! Turbdiff/vdifc routines.
280	real zdqsurfmr(ngrid,nq) ! Mass_redistribution routine.
281
282	! For Tracers : (kg/kg_of_air/s)
283	real zdqadj(ngrid,nlayer,nq) ! Convadj routine.
284	real zdqdif(ngrid,nlayer,nq) ! Turbdiff/vdifc routines.
285	real zdqevap(ngrid,nlayer) ! Turbdiff routine.
286	real zdqmr(ngrid,nlayer,nq) ! Mass_redistribution routine.
287
288	real zdqchi(ngrid,nlayer,nq) ! Chemical tendency ( chemistry routine ).
289
290	real zdqmufi(ngrid,nlayer,nq) ! Microphysical tendency.
291
292	real zdqfibar(ngrid,nlayer,nq) ! For 2D chemistry
293	real zdqmufibar(ngrid,nlayer,nq) ! For 2D chemistry
294
295	! For Winds : (m/s/s)
296	real zdvadj(ngrid,nlayer),zduadj(ngrid,nlayer) ! Convadj routine.
297	real zdumr(ngrid,nlayer),zdvmr(ngrid,nlayer) ! Mass_redistribution routine.
298	real zdvdif(ngrid,nlayer),zdudif(ngrid,nlayer) ! Turbdiff/vdifc routines.
299	real zdhdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
300	real zdhadj(ngrid,nlayer) ! Convadj routine.
301
302	! For Pressure and Mass :
303	real zdmassmr(ngrid,nlayer) ! Atmospheric Mass tendency for mass_redistribution (kg_of_air/m2/s).
304	real zdmassmr_col(ngrid) ! Atmospheric Column Mass tendency for mass_redistribution (kg_of_air/m2/s).
305	real zdpsrfmr(ngrid) ! Pressure tendency for mass_redistribution routine (Pa/s).
306
307
308
309	! Local variables for LOCAL CALCULATIONS:
310	! ---------------------------------------
311	real zflubid(ngrid)
312	real zplanck(ngrid),zpopsk(ngrid,nlayer)
313	real ztim1,ztim2,ztim3, z1,z2
314	real ztime_fin
315	real zdh(ngrid,nlayer)
316	real gmplanet
317	real taux(ngrid),tauy(ngrid)
318
319
320
321	! local variables for DIAGNOSTICS : (diagfi & stat)
322	! -------------------------------------------------
323	real ps(ngrid) ! Surface Pressure.
324	real zt(ngrid,nlayer) ! Atmospheric Temperature.
325	real zu(ngrid,nlayer),zv(ngrid,nlayer) ! Zonal and Meridional Winds.
326	real zq(ngrid,nlayer,nq) ! Atmospheric Tracers.
327	real zdtadj(ngrid,nlayer) ! Convadj Diagnostic.
328	real zdtdyn(ngrid,nlayer) ! Dynamical Heating (K/s).
329	real zdudyn(ngrid,nlayer) ! Dynamical Zonal Wind tendency (m.s-2).
330	real,allocatable,dimension(:,:),save :: ztprevious ! Previous loop Atmospheric Temperature (K) ! Useful for Dynamical Heating calculation.
331	real,allocatable,dimension(:,:),save :: zuprevious ! Previous loop Zonal Wind (m.s-1) ! Useful for Zonal Wind tendency calculation.
332	!$OMP THREADPRIVATE(ztprevious,zuprevious)
333
334	real zhorizwind(ngrid,nlayer) ! Horizontal Wind ( sqrt(u*+vv))
335
336	real vmr(ngrid,nlayer) ! volume mixing ratio
337	real time_phys
338
339	real ISR,ASR,OLR,GND,DYN,GSR,Ts1,Ts2,Ts3,TsS ! for Diagnostic.
340
341	! to test energy conservation (RW+JL)
342	real mass(ngrid,nlayer),massarea(ngrid,nlayer)
343	real dEtot, dEtots, AtmToSurf_TurbFlux
344	real,save :: dEtotSW, dEtotsSW, dEtotLW, dEtotsLW
345	!$OMP THREADPRIVATE(dEtotSW, dEtotsSW, dEtotLW, dEtotsLW)
346	real dEzRadsw(ngrid,nlayer),dEzRadlw(ngrid,nlayer),dEzdiff(ngrid,nlayer)
347	real dEdiffs(ngrid),dEdiff(ngrid)
348
349	!JL12 conservation test for mean flow kinetic energy has been disabled temporarily
350
351	real dItot, dItot_tmp, dVtot, dVtot_tmp
352
353	real dWtot, dWtot_tmp, dWtots, dWtots_tmp
354
355
356	! For Clear Sky Case.
357	real fluxsurf_lw1(ngrid), fluxsurf_sw1(ngrid), fluxsurfabs_sw1(ngrid) ! For SW/LW flux.
358	real fluxtop_lw1(ngrid), fluxabs_sw1(ngrid) ! For SW/LW flux.
359	real albedo_equivalent1(ngrid) ! For Equivalent albedo calculation.
360	real tf, ntf
361
362	real,allocatable,dimension(:,:),save :: qsurf_hist
363	!$OMP THREADPRIVATE(qsurf_hist)
364
365	! Miscellaneous :
366	character(len=10) :: tmp1
367	character(len=10) :: tmp2
368
369	! Local variables for Titan chemistry and microphysics
370	! ----------------------------------------------------
371
372	real,save :: ctimestep ! Chemistry timestep (s)
373	!$OMP THREADPRIVATE(ctimestep)
374
375	! Chemical tracers in molar fraction
376	real, dimension(ngrid,nlayer,nkim) :: ychim ! (mol/mol)
377	real, dimension(ngrid,nlayer,nkim) :: ychimbar ! For 2D chemistry
378
379	! Molar fraction tendencies ( chemistry, condensation and evaporation ) for tracers (mol/mol/s)
380	real, dimension(:,:,:), allocatable, save :: dycchi ! NB : Only for chem tracers. Saved since chemistry is not called every step.
381	!$OMP THREADPRIVATE(dycchi)
382	real, dimension(ngrid,nlayer,nq) :: dyccond ! Condensation rate. NB : for all tracers, as we want to use indx on it.
383	real, dimension(ngrid,nlayer,nq) :: dyccondbar ! For 2D chemistry
384	real, dimension(ngrid) :: dycevapCH4 ! Surface "pseudo-evaporation" rate (forcing constant surface humidity).
385
386	! Saturation profiles
387	real, dimension(ngrid,nlayer,nkim) :: ysat ! (mol/mol)
388
389	! Surface methane
390	real, dimension(:), allocatable, save :: tankCH4 ! Depth of surface methane tank (m)
391	!$OMP THREADPRIVATE(tankCH4)
392
393	real :: i2e(ngrid,nlayer) ! int 2 ext factor ( X.kg-1 -> X.m-3 for diags )
394
395	real,save,dimension(:,:,:), allocatable :: tpq ! Tracers for decoupled microphysical tests ( temporary in 01/18 )
396	!$OMP THREADPRIVATE(tpq)
397	real,dimension(ngrid,nlayer,nq) :: dtpq ! (temporary in 01/18)
398
399
400	!-----------------------------------------------------------------------------
401	! Interface to calmufi
402	! --> needed in order to pass assumed-shape arrays. Otherwise we must put calmufi in a module
403	! (to have an explicit interface generated by the compiler).
404	! Or one can put calmufi in MMP_GCM module (in muphytitan).
405	INTERFACE
406	SUBROUTINE calmufi(dt, plev, zlev, play, zlay, g3d, temp, pq, zdqfi, zdq)
407	REAL(kind=8), INTENT(IN) :: dt !! Physics timestep (s).
408	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: plev !! Pressure levels (Pa).
409	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: zlev !! Altitude levels (m).
410	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: play !! Pressure layers (Pa).
411	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: zlay !! Altitude at the center of each layer (m).
412	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: g3d !! Latitude-Altitude depending gravitational acceleration (m.s-2).
413	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: temp !! Temperature at the center of each layer (K).
414	REAL(kind=8), DIMENSION(:,:,:), INTENT(IN) :: pq !! Tracers ($kg.kg^{-1}}$).
415	REAL(kind=8), DIMENSION(:,:,:), INTENT(IN) :: zdqfi !! Tendency from former processes for tracers ($kg.kg^{-1}}$).
416	REAL(kind=8), DIMENSION(:,:,:), INTENT(OUT) :: zdq !! Microphysical tendency for tracers ($kg.kg^{-1}}$).
417	END SUBROUTINE calmufi
418	END INTERFACE
419
420	!==================================================================================================
421
422	! -----------------
423	! I. INITIALISATION
424	! -----------------
425
426	! --------------------------------
427	! I.1 First Call Initialisation.
428	! --------------------------------
429	if (firstcall) then
430	allocate(tpq(ngrid,nlayer,nq))
431	tpq(:,:,:) = pq(:,:,:)
432
433	! Initialisation of nmicro as well as tracers names, indexes ...
434	if (ngrid.ne.1) then ! Already done in rcm1d
435	call initracer2(nq,nametrac) ! WARNING JB (27/03/2018): should be wrapped in an OMP SINGLE statement (see module notes)
436	endif
437
438	! Allocate saved arrays.
439	ALLOCATE(tsurf(ngrid))
440	ALLOCATE(tsoil(ngrid,nsoilmx))
441	ALLOCATE(albedo(ngrid,L_NSPECTV))
442	ALLOCATE(albedo_equivalent(ngrid))
443	ALLOCATE(albedo_bareground(ngrid))
444	ALLOCATE(emis(ngrid))
445	ALLOCATE(dtrad(ngrid,nlayer))
446	ALLOCATE(fluxrad_sky(ngrid))
447	ALLOCATE(fluxrad(ngrid))
448	ALLOCATE(capcal(ngrid))
449	ALLOCATE(fluxgrd(ngrid))
450	ALLOCATE(qsurf(ngrid,nq))
451	ALLOCATE(q2(ngrid,nlayer+1))
452	ALLOCATE(tankCH4(ngrid))
453	ALLOCATE(ztprevious(ngrid,nlayer))
454	ALLOCATE(zuprevious(ngrid,nlayer))
455	ALLOCATE(qsurf_hist(ngrid,nq))
456	ALLOCATE(fluxsurf_lw(ngrid))
457	ALLOCATE(fluxsurf_sw(ngrid))
458	ALLOCATE(fluxsurfabs_sw(ngrid))
459	ALLOCATE(fluxtop_lw(ngrid))
460	ALLOCATE(fluxabs_sw(ngrid))
461	ALLOCATE(fluxtop_dn(ngrid))
462	ALLOCATE(fluxdyn(ngrid))
463	ALLOCATE(OLR_nu(ngrid,L_NSPECTI))
464	ALLOCATE(OSR_nu(ngrid,L_NSPECTV))
465	ALLOCATE(sensibFlux(ngrid))
466	ALLOCATE(zdtlw(ngrid,nlayer))
467	ALLOCATE(zdtsw(ngrid,nlayer))
468
469	! This is defined in comsaison_h
470	ALLOCATE(mu0(ngrid))
471	ALLOCATE(fract(ngrid))
472	! This is defined in radcommon_h
473	ALLOCATE(gzlat(ngrid,nlayer))
474	ALLOCATE(gzlat_ig(nlayer))
475	ALLOCATE(Cmk(nlayer))
476
477	! Variables set to 0
478	! ~~~~~~~~~~~~~~~~~~
479	dtrad(:,:) = 0.0
480	fluxrad(:) = 0.0
481	zdtsw(:,:) = 0.0
482	zdtlw(:,:) = 0.0
483
484	! Initialize setup for correlated-k radiative transfer
485	! JVO 17 : Was in callcorrk firstcall, but we need spectral intervals for microphysics
486	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
487
488	if (corrk) then
489
490	call system('rm -f surf_vals_long.out')
491
492	write( tmp1, '(i3)' ) L_NSPECTI
493	write( tmp2, '(i3)' ) L_NSPECTV
494	banddir=trim(adjustl(tmp1))//'x'//trim(adjustl(tmp2))
495	banddir=trim(adjustl(corrkdir))//'/'//trim(adjustl(banddir))
496
497	call setspi ! Basic infrared properties.
498	call setspv ! Basic visible properties.
499	call sugas_corrk ! Set up gaseous absorption properties.
500
501	OLR_nu(:,:) = 0.
502	OSR_nu(:,:) = 0.
503
504	endif
505
506	! Initialize names and timestep for chemistry
507	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
508
509	if ( callchim ) then
510
511	if ( moyzon_ch .and. ngrid.eq.1 ) then
512	print *, "moyzon_ch=",moyzon_ch," and ngrid=1"
513	print *, "Please desactivate zonal mean for 1D !"
514	stop
515	endif
516
517	allocate(dycchi(ngrid,nlayer,nkim)) ! only for chemical tracers
518
519	! Chemistry timestep
520	ctimestep = ptimestep*REAL(ichim)
521
522	zdqchi(:,:,:) = 0.0
523
524	endif
525
526	! Initialize microphysics.
527	! ~~~~~~~~~~~~~~~~~~~~~~~~
528
529	IF ( callmufi ) THEN
530	! WARNING JB (27/03/2018): inimufi AND mmp_initialize_optics should be wrapped in an OMP SINGLE statement.
531	call inimufi(ptimestep)
532	! Optical coupling of YAMMS is plugged but inactivated for now
533	! as long as the microphysics only isn't fully debugged -- JVO 01/18
534	! NOTE JB (03/18): mmp_optic_file is initialized in inimufi => mmp_initialize_optics must be called AFTER inimufi
535	IF (.NOT.uncoupl_optic_haze) call mmp_initialize_optics(mmp_optic_file)
536
537	! initialize microphysics diagnostics arrays.
538	call ini_diag_arrays(ngrid,nlayer,nice)
539
540	ENDIF
541
542
543	#ifdef CPP_XIOS
544	! Initialize XIOS context
545	write(,) "physiq: call wxios_context_init"
546	CALL wxios_context_init
547	#endif
548
549	! Read 'startfi.nc' file.
550	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
551	call phyetat0(startphy_file,ngrid,nlayer,"startfi.nc",0,0,nsoilmx,nq, &
552	day_ini,time_phys,tsurf,tsoil,emis,q2,qsurf,tankCH4)
553	if (.not.startphy_file) then
554	! additionnal "academic" initialization of physics
555	if (is_master) write(,) "Physiq: initializing tsurf(:) to pt(:,1) !!"
556	tsurf(:)=pt(:,1)
557	if (is_master) write(,) "Physiq: initializing tsoil(:) to pt(:,1) !!"
558	do isoil=1,nsoilmx
559	tsoil(:,isoil)=tsurf(:)
560	enddo
561	if (is_master) write(,) "Physiq: initializing day_ini to pdat !"
562	day_ini=pday
563	endif
564
565	if (pday.ne.day_ini) then
566	write(,) "ERROR in physiq.F90:"
567	write(,) "bad synchronization between physics and dynamics"
568	write(,) "dynamics day: ",pday
569	write(,) "physics day: ",day_ini
570	stop
571	endif
572	write (,) 'In physiq day_ini =', day_ini
573
574	! Initialize albedo calculation.
575	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
576	albedo(:,:)=0.0
577	albedo_bareground(:)=0.0
578	call surfini(ngrid,nq,qsurf,albedo,albedo_bareground)
579
580	! Initialize orbital calculation.
581	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
582	call iniorbit(apoastr,periastr,year_day,peri_day,obliquit)
583
584	if(tlocked)then
585	print*,'Planet is tidally locked at resonance n=',nres
586	print*,'Make sure you have the right rotation rate!!!'
587	endif
588
589
590	! Initialize soil.
591	! ~~~~~~~~~~~~~~~~
592	if (callsoil) then
593
594	call soil(ngrid,nsoilmx,firstcall,lastcall,inertiedat, &
595	ptimestep,tsurf,tsoil,capcal,fluxgrd)
596
597	else ! else of 'callsoil'.
598
599	print*,'WARNING! Thermal conduction in the soil turned off'
600	capcal(:)=1.e6
601	fluxgrd(:)=intheat
602	print*,'Flux from ground = ',intheat,' W m^-2'
603
604	endif ! end of 'callsoil'.
605
606	icount=1
607
608
609	! Initialize surface history variable.
610	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
611	qsurf_hist(:,:)=qsurf(:,:)
612
613	! Initialize variable for dynamical heating and zonal wind tendency diagnostic
614	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
615	ztprevious(:,:)=pt(:,:)
616	zuprevious(:,:)=pu(:,:)
617
618
619	if(meanOLR)then
620	call system('rm -f rad_bal.out') ! to record global radiative balance.
621	call system('rm -f tem_bal.out') ! to record global mean/max/min temperatures.
622	call system('rm -f h2o_bal.out') ! to record global hydrological balance.
623	endif
624
625	if (ngrid.ne.1) then
626	! Note : no need to create a restart file in 1d.
627	call physdem0("restartfi.nc",longitude,latitude,nsoilmx,ngrid,nlayer,nq, &
628	ptimestep,pday+nday,time_phys,cell_area, &
629	albedo_bareground,inertiedat,zmea,zstd,zsig,zgam,zthe)
630	endif
631
632	! XIOS outputs
633	#ifdef CPP_XIOS
634
635	write(,) "physiq: call initialize_xios_output"
636	call initialize_xios_output(pday,ptime,ptimestep,daysec, &
637	presnivs,pseudoalt)
638	#endif
639	write(,) "physiq: end of firstcall"
640	endif ! end of 'firstcall'
641
642	! ------------------------------------------------------
643	! I.2 Initializations done at every physical timestep:
644	! ------------------------------------------------------
645
646	#ifdef CPP_XIOS
647	! update XIOS time/calendar
648	call update_xios_timestep
649	#endif
650
651	! Initialize various variables
652	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
653
654	pdt(:,:) = 0.0
655	zdtsurf(:) = 0.0
656	pdq(:,:,:) = 0.0
657	dqsurf(:,:) = 0.0
658	pdu(:,:) = 0.0
659	pdv(:,:) = 0.0
660	pdpsrf(:) = 0.0
661	zflubid(:) = 0.0
662	taux(:) = 0.0
663	tauy(:) = 0.0
664
665	zday=pday+ptime ! Compute time, in sols (and fraction thereof).
666
667	! Compute Stellar Longitude (Ls), and orbital parameters.
668	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
669	if (season) then
670	call stellarlong(zday,zls)
671	else
672	call stellarlong(float(day_ini),zls)
673	end if
674
675	call orbite(zls,dist_star,declin,right_ascen)
676
677	if (tlocked) then
678	zlss=Mod(-(2.pi(zday/year_day)nres - right_ascen),2.pi)
679	elseif (diurnal) then
680	zlss=-2.pi(zday-.5)
681	else if(diurnal .eqv. .false.) then
682	zlss=9999.
683	endif
684
685
686	! Compute variations of g with latitude (oblate case).
687	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
688	if (oblate .eqv. .false.) then
689	gzlat(:,:) = g
690	else if (flatten .eq. 0.0 .or. J2 .eq. 0.0 .or. Rmean .eq. 0.0 .or. MassPlanet .eq. 0.0) then
691	print*,'I need values for flatten, J2, Rmean and MassPlanet to compute gzlat (else set oblate=.false.)'
692	call abort
693	else
694	gmplanet = MassPlanetgrav1e24
695	do ig=1,ngrid
696	gzlat(ig,:)= gmplanet/(Rmean*2) (1.D0 + 0.75 J2 - 2.0flatten/3. + (2.flatten - 15./4. J2) * cos(2. * (pi/2. - latitude(ig))))
697	end do
698	endif
699
700	! Compute altitudes with the geopotential coming from the dynamics.
701	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
702
703	if (eff_gz .eqv. .false.) then
704
705	do l=1,nlayer
706	zzlay(:,l) = pphi(:,l) / gzlat(:,l)
707	enddo
708
709	else ! In this case we consider variations of g with altitude
710
711	do l=1,nlayer
712	zzlay(:,l) = gradrad / ( g*rad - pphi(:,l) ) - rad
713	gzlat(:,l) = gradrad / ( rad + zzlay(:,l) )**2
714	end do
715
716	endif ! if eff_gz
717
718	zzlev(:,1)=0.
719	zzlev(:,nlayer+1)=1.e7 ! Dummy top of last layer above 10000 km...
720
721	do l=2,nlayer
722	do ig=1,ngrid
723	z1=(pplay(ig,l-1)+pplev(ig,l))/(pplay(ig,l-1)-pplev(ig,l))
724	z2=(pplev(ig,l)+pplay(ig,l))/(pplev(ig,l)-pplay(ig,l))
725	zzlev(ig,l)=(z1zzlay(ig,l-1)+z2zzlay(ig,l))/(z1+z2)
726	enddo
727	enddo
728
729	! Zonal averages needed for chemistry
730	! ~~~~~~~ Taken from old Titan ~~~~~~
731	if (moyzon_ch) then
732
733	if (eff_gz .eqv. .false.) then
734	zzlaybar(1,:)=(zphibar(1,:)+zphisbar(1))/g
735	else ! if we take into account effective altitude-dependent gravity field
736	zzlaybar(1,:)=gradrad/(g*rad-(zphibar(1,:)+zphisbar(1)))-rad
737	endif
738	zzlevbar(1,1)=zphisbar(1)/g
739	DO l=2,nlayer
740	z1=(zplaybar(1,l-1)+zplevbar(1,l))/(zplaybar(1,l-1)-zplevbar(1,l))
741	z2=(zplevbar(1,l) +zplaybar(1,l))/(zplevbar(1,l) -zplaybar(1,l))
742	zzlevbar(1,l)=(z1zzlaybar(1,l-1)+z2zzlaybar(1,l))/(z1+z2)
743	ENDDO
744	zzlevbar(1,nlayer+1)=zzlaybar(1,nlayer)+(zzlaybar(1,nlayer)-zzlevbar(1,nlayer))
745
746	DO ig=2,ngrid
747	if (latitude(ig).ne.latitude(ig-1)) then
748	DO l=1,nlayer
749	if (eff_gz .eqv. .false.) then
750	zzlaybar(ig,l)=(zphibar(ig,l)+zphisbar(ig))/g
751	else ! if we take into account effective altitude-dependent gravity field
752	zzlaybar(ig,l)=gradrad/(g*rad-(zphibar(ig,l)+zphisbar(ig)))-rad
753	endif
754	ENDDO
755	zzlevbar(ig,1)=zphisbar(ig)/g
756	DO l=2,nlayer
757	z1=(zplaybar(ig,l-1)+zplevbar(ig,l))/ (zplaybar(ig,l-1)-zplevbar(ig,l))
758	z2=(zplevbar(ig,l) +zplaybar(ig,l))/(zplevbar(ig,l) -zplaybar(ig,l))
759	zzlevbar(ig,l)=(z1zzlaybar(ig,l-1)+z2zzlaybar(ig,l))/(z1+z2)
760	ENDDO
761	zzlevbar(ig,nlayer+1)=zzlaybar(ig,nlayer)+(zzlaybar(ig,nlayer)-zzlevbar(ig,nlayer))
762	else
763	zzlaybar(ig,:)=zzlaybar(ig-1,:)
764	zzlevbar(ig,:)=zzlevbar(ig-1,:)
765	endif
766	ENDDO
767
768	endif ! moyzon
769
770	! -------------------------------------------------------------------------------------
771	! Compute potential temperature
772	! Note : Potential temperature calculation may not be the same in physiq and dynamic...
773	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
774	do l=1,nlayer
775	do ig=1,ngrid
776	zpopsk(ig,l)=(pplay(ig,l)/pplev(ig,1))**rcp
777	zh(ig,l)=pt(ig,l)/zpopsk(ig,l)
778	mass(ig,l) = (pplev(ig,l) - pplev(ig,l+1))/gzlat(ig,l)
779	massarea(ig,l)=mass(ig,l)*cell_area(ig)
780	enddo
781	enddo
782
783	! Compute vertical velocity (m/s) from vertical mass flux
784	! w = F / (rhoarea) and rho = P/(rT)
785	! But first linearly interpolate mass flux to mid-layers
786	do l=1,nlayer-1
787	pw(:,l)=0.5*(flxw(:,l)+flxw(:,l+1))
788	enddo
789	pw(:,nlayer)=0.5*flxw(:,nlayer) ! since flxw(nlayer+1)=0
790	do l=1,nlayer
791	pw(:,l)=(pw(:,l)rpt(:,l)) / (pplay(:,l)*cell_area(:))
792	enddo
793
794	!---------------------------------
795	! II. Compute radiative tendencies
796	!---------------------------------
797
798	if (callrad) then
799	if( mod(icount-1,iradia).eq.0.or.lastcall) then
800
801	! Compute local stellar zenith angles
802	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
803	if (tlocked) then
804	! JL14 corrects tidally resonant (and inclined) cases. nres=omega_rot/omega_orb
805	ztim1=SIN(declin)
806	ztim2=COS(declin)*COS(zlss)
807	ztim3=COS(declin)*SIN(zlss)
808
809	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
810	ztim1,ztim2,ztim3,mu0,fract, flatten)
811
812	elseif (diurnal) then
813	ztim1=SIN(declin)
814	ztim2=COS(declin)COS(2.pi*(zday-.5))
815	ztim3=-COS(declin)SIN(2.pi*(zday-.5))
816
817	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
818	ztim1,ztim2,ztim3,mu0,fract, flatten)
819	else if(diurnal .eqv. .false.) then
820
821	call mucorr(ngrid,declin,latitude,mu0,fract,10000.,rad,flatten)
822	! WARNING: this function appears not to work in 1D
823
824	endif
825
826	! Eclipse incoming sunlight (e.g. Saturn ring shadowing).
827	if(rings_shadow) then
828	call call_rings(ngrid, ptime, pday, diurnal)
829	endif
830
831
832	if (corrk) then
833
834	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
835	! II.a Call correlated-k radiative transfer scheme
836	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
837
838	call call_profilgases(nlayer)
839
840	! standard callcorrk
841	call callcorrk(ngrid,nlayer,pq,nq,qsurf,zday, &
842	albedo,albedo_equivalent,emis,mu0,pplev,pplay,pt, &
843	tsurf,fract,dist_star, &
844	zdtlw,zdtsw,fluxsurf_lw,fluxsurf_sw, &
845	fluxsurfabs_sw,fluxtop_lw, &
846	fluxabs_sw,fluxtop_dn,OLR_nu,OSR_nu, &
847	lastcall)
848
849	! Radiative flux from the sky absorbed by the surface (W.m-2).
850	GSR=0.0
851	fluxrad_sky(:)=emis(:)*fluxsurf_lw(:)+fluxsurfabs_sw(:)
852
853	!if(noradsurf)then ! no lower surface; SW flux just disappears
854	! GSR = SUM(fluxsurf_sw(:)*cell_area(:))/totarea
855	! fluxrad_sky(:)=emis(:)*fluxsurf_lw(:)
856	! print*,'SW lost in deep atmosphere = ',GSR,' W m^-2'
857	!endif
858
859	! Net atmospheric radiative heating rate (K.s-1)
860	dtrad(:,:)=zdtsw(:,:)+zdtlw(:,:)
861
862	elseif(newtonian)then
863
864	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
865	! II.b Call Newtonian cooling scheme
866	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
867	call newtrelax(ngrid,nlayer,mu0,sinlat,zpopsk,pt,pplay,pplev,dtrad,firstcall)
868
869	zdtsurf(:) = +(pt(:,1)-tsurf(:))/ptimestep
870	! e.g. surface becomes proxy for 1st atmospheric layer ?
871
872	else
873
874	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
875	! II.c Atmosphere has no radiative effect
876	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
877	fluxtop_dn(:) = fract(:)mu0(:)Fat1AU/dist_star**2
878	if(ngrid.eq.1)then ! / by 4 globally in 1D case...
879	fluxtop_dn(1) = fract(1)Fat1AU/dist_star*2/2.0
880	endif
881	fluxsurf_sw(:) = fluxtop_dn(:)
882	print*,'------------WARNING---WARNING------------' ! by MT2015.
883	print*,'You are in corrk=false mode, '
884	print*,'and the surface albedo is taken equal to the first visible spectral value'
885
886	fluxsurfabs_sw(:) = fluxtop_dn(:)*(1.-albedo(:,1))
887	fluxrad_sky(:) = fluxsurfabs_sw(:)
888	fluxtop_lw(:) = emis(:)sigmatsurf(:)**4
889
890	dtrad(:,:)=0.0 ! no atmospheric radiative heating
891
892	endif ! end of corrk
893
894	endif ! of if(mod(icount-1,iradia).eq.0)
895
896
897	! Transformation of the radiative tendencies
898	! ------------------------------------------
899	zplanck(:)=tsurf(:)*tsurf(:)
900	zplanck(:)=emis(:)sigmazplanck(:)*zplanck(:)
901	fluxrad(:)=fluxrad_sky(:)-zplanck(:)
902	pdt(:,:)=pdt(:,:)+dtrad(:,:)
903
904	! Test of energy conservation
905	!----------------------------
906	if(enertest)then
907	call planetwide_sumval(cppmassarea(:,:)zdtsw(:,:)/totarea_planet,dEtotSW)
908	call planetwide_sumval(cppmassarea(:,:)zdtlw(:,:)/totarea_planet,dEtotLW)
909	!call planetwide_sumval(fluxsurf_sw(:)(1.-albedo_equivalent(:))cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
910	call planetwide_sumval(fluxsurfabs_sw(:)*cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
911	call planetwide_sumval((fluxsurf_lw(:)emis(:)-zplanck(:))cell_area(:)/totarea_planet,dEtotsLW)
912	dEzRadsw(:,:)=cppmass(:,:)zdtsw(:,:)
913	dEzRadlw(:,:)=cppmass(:,:)zdtlw(:,:)
914	if (is_master) then
915	print*,'---------------------------------------------------------------'
916	print*,'In corrk SW atmospheric heating =',dEtotSW,' W m-2'
917	print*,'In corrk LW atmospheric heating =',dEtotLW,' W m-2'
918	print*,'atmospheric net rad heating (SW+LW) =',dEtotLW+dEtotSW,' W m-2'
919	print*,'In corrk SW surface heating =',dEtotsSW,' W m-2'
920	print*,'In corrk LW surface heating =',dEtotsLW,' W m-2'
921	print*,'surface net rad heating (SW+LW) =',dEtotsLW+dEtotsSW,' W m-2'
922	endif
923	endif ! end of 'enertest'
924
925	endif ! of if (callrad)
926
927
928
929	! --------------------------------------------
930	! III. Vertical diffusion (turbulent mixing) :
931	! --------------------------------------------
932
933	if (calldifv) then
934
935	zflubid(:)=fluxrad(:)+fluxgrd(:)
936
937	! JL12 the following if test is temporarily there to allow us to compare the old vdifc with turbdiff.
938	if (UseTurbDiff) then
939
940	call turbdiff(ngrid,nlayer,nq, &
941	ptimestep,capcal,lwrite, &
942	pplay,pplev,zzlay,zzlev,z0, &
943	pu,pv,pt,zpopsk,pq,tsurf,emis,qsurf, &
944	pdt,pdq,zflubid, &
945	zdudif,zdvdif,zdtdif,zdtsdif, &
946	sensibFlux,q2,zdqdif,zdqsdif, &
947	taux,tauy,lastcall)
948
949	else
950
951	zdh(:,:)=pdt(:,:)/zpopsk(:,:)
952
953	call vdifc(ngrid,nlayer,nq,zpopsk, &
954	ptimestep,capcal,lwrite, &
955	pplay,pplev,zzlay,zzlev,z0, &
956	pu,pv,zh,pq,tsurf,emis,qsurf, &
957	zdh,pdq,zflubid, &
958	zdudif,zdvdif,zdhdif,zdtsdif, &
959	sensibFlux,q2,zdqdif,zdqsdif, &
960	taux,tauy,lastcall)
961
962	zdtdif(:,:)=zdhdif(:,:)*zpopsk(:,:) ! for diagnostic only
963	zdqevap(:,:)=0.
964
965	end if !end of 'UseTurbDiff'
966
967
968	pdv(:,:)=pdv(:,:)+zdvdif(:,:)
969	pdu(:,:)=pdu(:,:)+zdudif(:,:)
970	pdt(:,:)=pdt(:,:)+zdtdif(:,:)
971	zdtsurf(:)=zdtsurf(:)+zdtsdif(:)
972
973	if (tracer) then
974	pdq(:,:,:)=pdq(:,:,:)+ zdqdif(:,:,:)
975	dqsurf(:,:)=dqsurf(:,:) + zdqsdif(:,:)
976	end if ! of if (tracer)
977
978
979	! test energy conservation
980	!-------------------------
981	if(enertest)then
982
983	dEzdiff(:,:)=cppmass(:,:)zdtdif(:,:)
984	do ig = 1, ngrid
985	dEdiff(ig)=SUM(dEzdiff (ig,:))+ sensibFlux(ig)! subtract flux to the ground
986	dEzdiff(ig,1)= dEzdiff(ig,1)+ sensibFlux(ig)! subtract flux to the ground
987	enddo
988
989	call planetwide_sumval(dEdiff(:)*cell_area(:)/totarea_planet,dEtot)
990	dEdiffs(:)=capcal(:)*zdtsdif(:)-zflubid(:)-sensibFlux(:)
991	call planetwide_sumval(dEdiffs(:)*cell_area(:)/totarea_planet,dEtots)
992	call planetwide_sumval(sensibFlux(:)*cell_area(:)/totarea_planet,AtmToSurf_TurbFlux)
993
994	if (is_master) then
995
996	if (UseTurbDiff) then
997	print*,'In TurbDiff sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
998	print*,'In TurbDiff non-cons atm nrj change =',dEtot,' W m-2'
999	print*,'In TurbDiff (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1000	else
1001	print*,'In vdifc sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
1002	print*,'In vdifc non-cons atm nrj change =',dEtot,' W m-2'
1003	print*,'In vdifc (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1004	end if
1005	endif ! end of 'is_master'
1006
1007	! JL12 : note that the black body radiative flux emitted by the surface has been updated by the implicit scheme but not given back elsewhere.
1008	endif ! end of 'enertest'
1009
1010	else ! calldifv
1011
1012	if(.not.newtonian)then
1013
1014	zdtsurf(:) = zdtsurf(:) + (fluxrad(:) + fluxgrd(:))/capcal(:)
1015
1016	endif
1017
1018	endif ! end of 'calldifv'
1019
1020
1021	!----------------------------------
1022	! IV. Dry convective adjustment :
1023	!----------------------------------
1024
1025	if(calladj) then
1026
1027	zdh(:,:) = pdt(:,:)/zpopsk(:,:)
1028	zduadj(:,:)=0.0
1029	zdvadj(:,:)=0.0
1030	zdhadj(:,:)=0.0
1031
1032
1033	call convadj(ngrid,nlayer,nq,ptimestep, &
1034	pplay,pplev,zpopsk, &
1035	pu,pv,zh,pq, &
1036	pdu,pdv,zdh,pdq, &
1037	zduadj,zdvadj,zdhadj, &
1038	zdqadj)
1039
1040	pdu(:,:) = pdu(:,:) + zduadj(:,:)
1041	pdv(:,:) = pdv(:,:) + zdvadj(:,:)
1042	pdt(:,:) = pdt(:,:) + zdhadj(:,:)*zpopsk(:,:)
1043	zdtadj(:,:) = zdhadj(:,:)*zpopsk(:,:) ! for diagnostic only
1044
1045	if(tracer) then
1046	pdq(:,:,:) = pdq(:,:,:) + zdqadj(:,:,:)
1047	end if
1048
1049	! Test energy conservation
1050	if(enertest)then
1051	call planetwide_sumval(cppmassarea(:,:)zdtadj(:,:)/totarea_planet,dEtot)
1052	if (is_master) print*,'In convadj atmospheric energy change =',dEtot,' W m-2'
1053	endif
1054
1055
1056	endif ! end of 'calladj'
1057
1058
1059	!---------------------------------------------
1060	! V. Specific parameterizations for tracers
1061	!---------------------------------------------
1062
1063	if (tracer) then
1064
1065	! -------------------
1066	! V.1 Microphysics
1067	! -------------------
1068
1069	! JVO 05/18 : We must call microphysics before chemistry, for condensation !
1070
1071	if (callmufi) then
1072	#ifdef USE_QTEST
1073	dtpq(:,:,:) = 0.0 ! we want tpq to go only through mufi
1074	call calmufi(ptimestep,pplev,zzlev,pplay,zzlay,gzlat,pt,tpq,dtpq,zdqmufi)
1075	tpq(:,:,:) = tpq(:,:,:) + zdqmufi(:,:,:)ptimestep ! only manipulation of tpq->ptimestep here
1076	#else
1077	call calmufi(ptimestep,pplev,zzlev,pplay,zzlay,gzlat,pt,pq,pdq,zdqmufi)
1078	pdq(:,:,:) = pdq(:,:,:) + zdqmufi(:,:,:)
1079	#endif
1080
1081	! Microphysics condensation for 2D fields to sent non-saturated fields to photochem
1082	if ( callclouds .and. moyzon_ch .and. mod(icount-1,ichim).eq.0 ) then
1083	zdqfibar(:,:,:) = 0.0 ! We work in zonal average -> forget processes other than condensation
1084	call calmufi(ptimestep,zplevbar,zzlevbar,zplaybar,zzlaybar, &
1085	gzlat,ztfibar,zqfibar,zdqfibar,zdqmufibar)
1086	endif
1087
1088	endif
1089
1090	! -----------------
1091	! V.2. Chemistry
1092	! -----------------
1093	! NB : Must be call last ( brings fields back to an equilibrium )
1094
1095	! Known bug ? ( JVO 18 ) : If you try to use chimi_indx instead of iq+nmicro
1096	! it leads to weird results / crash on dev mod ( ok in debug ) ... Why ? Idk ...
1097
1098	if (callchim) then
1099
1100	! o. Convert updated tracers to molar fraction
1101	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1102	do iq = 1,nkim
1103	ychim(:,:,iq) = ( pq(:,:,iq+nmicro) + pdq(:,:,iq+nmicro) ) / rat_mmol(iq+nmicro)
1104	enddo
1105
1106	! JVO 05/18 : We update zonally averaged fields with condensation
1107	! as it is compulsory to have correct photochem production. But for other
1108	! processes ( convadj ... ) we miss them in any case as we work in zonally/diurnal
1109	! mean -> no fine diurnal/short time evolution, only seasonal evolution only.
1110	if ( moyzon_ch .and. mod(icount-1,ichim).eq. 0 ) then
1111	do iq = 1,nkim
1112	ychimbar(:,:,iq) = zqfibar(:,:,iq+nmicro) / rat_mmol(iq+nmicro)
1113	if ( callclouds ) then
1114	ychimbar(:,:,iq) = ychimbar(:,:,iq) + ( zdqmufibar(:,:,iq+nmicro) / rat_mmol(iq+nmicro) )
1115	endif
1116	enddo
1117	endif
1118
1119	! i. Condensation of the 3D tracers after the transport
1120	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1121
1122	call calc_ysat(ngrid,nlayer,pplay/100.0,pt,ysat) ! Compute saturation profiles for every grid point
1123
1124	dyccond(:,:,:) = 0.0 ! Default value -> no condensation
1125
1126	do iq=1,nkim
1127	where ( ychim(:,:,iq).gt.ysat(:,:,iq) ) &
1128	dyccond(:,:,iq+nmicro) = ( -ychim(:,:,iq)+ysat(:,:,iq) ) / ptimestep
1129	enddo
1130
1131	if ( callclouds ) dyccond(:,:,ices_indx) = 0.0 ! Condensation have been calculated in the cloud microphysics
1132
1133	do iq=1,nkim
1134	ychim(:,:,iq) = ychim(:,:,iq) + dyccond(:,:,iq+nmicro) ! update molar ychim for following calchim
1135
1136	pdq(:,:,iq+nmicro) = pdq(:,:,iq+nmicro) + dyccond(:,:,iq+nmicro)*rat_mmol(iq+nmicro) ! convert tendencies to mass mixing ratio
1137	enddo
1138
1139
1140	! ii. 2D zonally averaged fields need to condense and evap before photochem
1141	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1142	if ( moyzon_ch .and. mod(icount-1,ichim).eq. 0 ) then
1143
1144	call calc_ysat(ngrid,nlayer,zplaybar/100.0,ztfibar,ysat) ! Compute saturation profiles for every grid point for the zon-ave fields
1145
1146	dyccondbar(:,:,:) = 0.0 ! Default value -> no condensation
1147
1148	do iq = 1,nkim
1149	where ( ychimbar(:,:,iq).gt.ysat(:,:,iq) ) &
1150	dyccondbar(:,:,iq+nmicro) = ( -ychimbar(:,:,iq)+ysat(:,:,iq) ) / ptimestep
1151	enddo
1152
1153	if ( callclouds ) dyccondbar(:,:,ices_indx) = 0.0 ! Condensation have been calculated in the cloud microphysics
1154
1155	do iq=1,nkim
1156	ychimbar(:,:,iq) = ychimbar(:,:,iq) + dyccondbar(:,:,iq+nmicro)
1157	enddo
1158
1159	! Pseudo-evap ( forcing constant surface humidity )
1160	do ig=1,ngrid
1161	if ( ychimbar(ig,1,7+nmicro) .lt. botCH4 ) ychimbar(ig,1,7+nmicro) = botCH4
1162	enddo
1163
1164	endif ! if ( moyzon_ch .and. mod(icount-1,ichim).eq. 0 )
1165
1166	! iii. Photochemistry ( must be call after condensation (and evap of 2D) )
1167	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1168	if( mod(icount-1,ichim).eq.0. ) then
1169
1170	print *, "We enter in the chemistry ..."
1171
1172	if (moyzon_ch) then ! 2D zonally averaged chemistry
1173
1174	! Here we send zonal average fields ( corrected with cond ) from dynamics to chem. module
1175	call calchim(ngrid,ychimbar,declin,ctimestep,ztfibar,zphibar, &
1176	zplaybar,zplevbar,zzlaybar,zzlevbar,dycchi)
1177	else ! 3D chemistry (or 1D run)
1178	call calchim(ngrid,ychim,declin,ctimestep,pt,pphi, &
1179	pplay,pplev,zzlay,zzlev,dycchi)
1180	endif ! if moyzon
1181
1182	endif
1183
1184	! iv. Surface pseudo-evaporation
1185	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1186	do ig=1,ngrid
1187	if ( (ychim(ig,1,7+nmicro)+dycchi(ig,1,7+nmicro)*ptimestep) .lt. botCH4 ) then ! +dycchi because ychim not yet updated
1188	dycevapCH4(ig) = ( -ychim(ig,1,7+nmicro)+botCH4 ) / ptimestep - dycchi(ig,1,7+nmicro)
1189	else
1190	dycevapCH4(ig) = 0.0
1191	endif
1192	enddo
1193
1194	pdq(:,1,7+nmicro) = pdq(:,1,7+nmicro) + dycevapCH4(:)*rat_mmol(7+nmicro)
1195
1196	! v. Updates and positivity check
1197	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1198	do iq=1,nkim
1199	zdqchi(:,:,iq+nmicro) = dycchi(:,:,iq)*rat_mmol(iq+nmicro) ! convert tendencies to mass mixing ratio
1200
1201	where( (pq(:,:,iq+nmicro) + ( pdq(:,:,iq+nmicro)+zdqchi(:,:,iq+nmicro) )*ptimestep ) .LT. 0.) & ! When using zonal means we set the same tendency
1202	zdqchi(:,:,iq+nmicro) = 1.e-30 - pdq(:,:,iq+nmicro) - pq(:,:,iq+nmicro)/ptimestep ! everywhere in longitude -> could lead to negs !
1203	enddo
1204
1205	pdq(:,:,:) = pdq(:,:,:) + zdqchi(:,:,:)
1206
1207	endif ! end of 'callchim'
1208
1209	! ---------------
1210	! V.3 Updates
1211	! ---------------
1212
1213	! Updating Atmospheric Mass and Tracers budgets.
1214	if(mass_redistrib) then
1215
1216	zdmassmr(:,:) = mass(:,:) * zdqevap(:,:)
1217
1218	do ig = 1, ngrid
1219	zdmassmr_col(ig)=SUM(zdmassmr(ig,:))
1220	enddo
1221
1222	call writediagfi(ngrid,"mass_evap","mass gain"," ",3,zdmassmr)
1223	call writediagfi(ngrid,"mass_evap_col","mass gain col"," ",2,zdmassmr_col)
1224	call writediagfi(ngrid,"mass","mass","kg/m2",3,mass)
1225
1226	call mass_redistribution(ngrid,nlayer,nq,ptimestep, &
1227	capcal,pplay,pplev,pt,tsurf,pq,qsurf, &
1228	pu,pv,pdt,zdtsurf,pdq,pdu,pdv,zdmassmr, &
1229	zdtmr,zdtsurfmr,zdpsrfmr,zdumr,zdvmr,zdqmr,zdqsurfmr)
1230
1231	pdq(:,:,:) = pdq(:,:,:) + zdqmr(:,:,:)
1232	dqsurf(:,:) = dqsurf(:,:) + zdqsurfmr(:,:)
1233	pdt(:,:) = pdt(:,:) + zdtmr(:,:)
1234	pdu(:,:) = pdu(:,:) + zdumr(:,:)
1235	pdv(:,:) = pdv(:,:) + zdvmr(:,:)
1236	pdpsrf(:) = pdpsrf(:) + zdpsrfmr(:)
1237	zdtsurf(:) = zdtsurf(:) + zdtsurfmr(:)
1238
1239	endif
1240
1241	! -----------------------------
1242	! V.4. Surface Tracer Update
1243	! -----------------------------
1244
1245	qsurf(:,:) = qsurf(:,:) + ptimestep*dqsurf(:,:)
1246
1247	! Add qsurf to qsurf_hist, which is what we save in diagfi.nc. At the same time, we set the water
1248	! content of ocean gridpoints back to zero, in order to avoid rounding errors in vdifc, rain.
1249	qsurf_hist(:,:) = qsurf(:,:)
1250
1251	endif! end of if 'tracer'
1252
1253
1254	!------------------------------------------------
1255	! VI. Surface and sub-surface soil temperature
1256	!------------------------------------------------
1257
1258
1259	! Increment surface temperature
1260
1261	tsurf(:)=tsurf(:)+ptimestep*zdtsurf(:)
1262
1263	! Compute soil temperatures and subsurface heat flux.
1264	if (callsoil) then
1265	call soil(ngrid,nsoilmx,.false.,lastcall,inertiedat, &
1266	ptimestep,tsurf,tsoil,capcal,fluxgrd)
1267	endif
1268
1269
1270	! Test energy conservation
1271	if(enertest)then
1272	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf(:)/totarea_planet,dEtots)
1273	if (is_master) print*,'Surface energy change =',dEtots,' W m-2'
1274	endif
1275
1276
1277	!---------------------------------------------------
1278	! VII. Perform diagnostics and write output files
1279	!---------------------------------------------------
1280
1281	! Note : For output only: the actual model integration is performed in the dynamics.
1282
1283	! Temperature, zonal and meridional winds.
1284	zt(:,:) = pt(:,:) + pdt(:,:)*ptimestep
1285	zu(:,:) = pu(:,:) + pdu(:,:)*ptimestep
1286	zv(:,:) = pv(:,:) + pdv(:,:)*ptimestep
1287
1288	! Diagnostic.
1289	zdtdyn(:,:) = (pt(:,:)-ztprevious(:,:)) / ptimestep
1290	ztprevious(:,:) = zt(:,:)
1291
1292	zdudyn(:,:) = (pu(:,:)-zuprevious(:,:)) / ptimestep
1293	zuprevious(:,:) = zu(:,:)
1294
1295	if(firstcall)then
1296	zdtdyn(:,:)=0.0
1297	zdudyn(:,:)=0.0
1298	endif
1299
1300	! Horizotal wind
1301	zhorizwind(:,:) = sqrt( zu(:,:)zu(:,:) + zv(:,:)zv(:,:) )
1302
1303	! Dynamical heating diagnostic.
1304	do ig=1,ngrid
1305	fluxdyn(ig)= SUM(zdtdyn(ig,:) mass(ig,:))cpp
1306	enddo
1307
1308	! Tracers.
1309	zq(:,:,:) = pq(:,:,:) + pdq(:,:,:)*ptimestep
1310
1311	! Surface pressure.
1312	ps(:) = pplev(:,1) + pdpsrf(:)*ptimestep
1313
1314
1315
1316	! Surface and soil temperature information
1317	call planetwide_sumval(cell_area(:)*tsurf(:)/totarea_planet,Ts1)
1318	call planetwide_minval(tsurf(:),Ts2)
1319	call planetwide_maxval(tsurf(:),Ts3)
1320	if(callsoil)then
1321	TsS = SUM(cell_area(:)*tsoil(:,nsoilmx))/totarea ! mean temperature at bottom soil layer
1322	if (is_master) then
1323	print*,' ave[Tsurf] min[Tsurf] max[Tsurf] ave[Tdeep]'
1324	print*,Ts1,Ts2,Ts3,TsS
1325	end if
1326	else
1327	if (is_master) then
1328	print*,' ave[Tsurf] min[Tsurf] max[Tsurf]'
1329	print*,Ts1,Ts2,Ts3
1330	endif
1331	end if
1332
1333
1334	! Check the energy balance of the simulation during the run
1335	if(corrk)then
1336
1337	call planetwide_sumval(cell_area(:)*fluxtop_dn(:)/totarea_planet,ISR)
1338	call planetwide_sumval(cell_area(:)*fluxabs_sw(:)/totarea_planet,ASR)
1339	call planetwide_sumval(cell_area(:)*fluxtop_lw(:)/totarea_planet,OLR)
1340	call planetwide_sumval(cell_area(:)*fluxgrd(:)/totarea_planet,GND)
1341	call planetwide_sumval(cell_area(:)*fluxdyn(:)/totarea_planet,DYN)
1342	do ig=1,ngrid
1343	if(fluxtop_dn(ig).lt.0.0)then
1344	print*,'fluxtop_dn has gone crazy'
1345	print*,'fluxtop_dn=',fluxtop_dn(ig)
1346	print*,'temp= ',pt(ig,:)
1347	print*,'pplay= ',pplay(ig,:)
1348	call abort
1349	endif
1350	end do
1351
1352	if(ngrid.eq.1)then
1353	DYN=0.0
1354	endif
1355
1356	if (is_master) then
1357	print*,' ISR ASR OLR GND DYN [W m^-2]'
1358	print*, ISR,ASR,OLR,GND,DYN
1359	endif
1360
1361	if(enertest .and. is_master)then
1362	print*,'SW flux/heating difference SW++ - ASR = ',dEtotSW+dEtotsSW-ASR,' W m-2'
1363	print*,'LW flux/heating difference LW++ - OLR = ',dEtotLW+dEtotsLW+OLR,' W m-2'
1364	print*,'LW energy balance LW++ + ASR = ',dEtotLW+dEtotsLW+ASR,' W m-2'
1365	endif
1366
1367	if(meanOLR .and. is_master)then
1368	if((ngrid.gt.1) .or. (mod(icount-1,ecritphy).eq.0))then
1369	! to record global radiative balance
1370	open(92,file="rad_bal.out",form='formatted',position='append')
1371	write(92,*) zday,ISR,ASR,OLR
1372	close(92)
1373	open(93,file="tem_bal.out",form='formatted',position='append')
1374	if(callsoil)then
1375	write(93,*) zday,Ts1,Ts2,Ts3,TsS
1376	else
1377	write(93,*) zday,Ts1,Ts2,Ts3
1378	endif
1379	close(93)
1380	endif
1381	endif
1382
1383	endif ! end of 'corrk'
1384
1385
1386	! Diagnostic to test radiative-convective timescales in code.
1387	if(testradtimes)then
1388	open(38,file="tau_phys.out",form='formatted',position='append')
1389	ig=1
1390	do l=1,nlayer
1391	write(38,*) -1./pdt(ig,l),pt(ig,l),pplay(ig,l)
1392	enddo
1393	close(38)
1394	print*,'As testradtimes enabled,'
1395	print*,'exiting physics on first call'
1396	call abort
1397	endif
1398
1399
1400	if (is_master) print,'--> Ls =',zls180./pi
1401
1402
1403	!----------------------------------------------------------------------
1404	! Writing NetCDF file "RESTARTFI" at the end of the run
1405	!----------------------------------------------------------------------
1406
1407	! Note: 'restartfi' is stored just before dynamics are stored
1408	! in 'restart'. Between now and the writting of 'restart',
1409	! there will have been the itau=itau+1 instruction and
1410	! a reset of 'time' (lastacll = .true. when itau+1= itaufin)
1411	! thus we store for time=time+dtvr
1412
1413
1414
1415	if(lastcall) then
1416	ztime_fin = ptime + ptimestep/(float(iphysiq)*daysec)
1417
1418	if (ngrid.ne.1) then
1419	write(,)'PHYSIQ: for physdem ztime_fin =',ztime_fin
1420
1421	call physdem1("restartfi.nc",nsoilmx,ngrid,nlayer,nq, &
1422	ptimestep,ztime_fin, &
1423	tsurf,tsoil,emis,q2,qsurf_hist,tankCH4)
1424	endif
1425	endif ! end of 'lastcall'
1426
1427
1428	!-----------------------------------------------------------------------------------------------------
1429	! OUTPUT in netcdf file "DIAGFI.NC", containing any variable for diagnostic
1430	!
1431	! Note 1 : output with period "ecritphy", set in "run.def"
1432	!
1433	! Note 2 : writediagfi can also be called from any other subroutine for any variable,
1434	! but its preferable to keep all the calls in one place ...
1435	!-----------------------------------------------------------------------------------------------------
1436
1437
1438	call writediagfi(ngrid,"Ls","solar longitude","deg",0,zls*180./pi)
1439	call writediagfi(ngrid,"Lss","sub solar longitude","deg",0,zlss*180./pi)
1440	call writediagfi(ngrid,"RA","right ascension","deg",0,right_ascen*180./pi)
1441	call writediagfi(ngrid,"Declin","solar declination","deg",0,declin*180./pi)
1442	call writediagfi(ngrid,"tsurf","Surface temperature","K",2,tsurf)
1443	call writediagfi(ngrid,"ps","Surface pressure","Pa",2,ps)
1444	call writediagfi(ngrid,"temp","temperature","K",3,zt)
1445	call writediagfi(ngrid,"teta","potential temperature","K",3,zh)
1446	call writediagfi(ngrid,"u","Zonal wind","m.s-1",3,zu)
1447	call writediagfi(ngrid,"v","Meridional wind","m.s-1",3,zv)
1448	call writediagfi(ngrid,"w","Vertical wind","m.s-1",3,pw)
1449	call writediagfi(ngrid,"p","Pressure","Pa",3,pplay)
1450
1451	! Subsurface temperatures
1452	! call writediagsoil(ngrid,"tsurf","Surface temperature","K",2,tsurf)
1453	! call writediagsoil(ngrid,"temp","temperature","K",3,tsoil)
1454
1455
1456
1457	! Total energy balance diagnostics
1458	if(callrad.and.(.not.newtonian))then
1459
1460	!call writediagfi(ngrid,"ALB","Surface albedo"," ",2,albedo_equivalent)
1461	call writediagfi(ngrid,"ISR","incoming stellar rad.","W m-2",2,fluxtop_dn)
1462	call writediagfi(ngrid,"ASR","absorbed stellar rad.","W m-2",2,fluxabs_sw)
1463	call writediagfi(ngrid,"OLR","outgoing longwave rad.","W m-2",2,fluxtop_lw)
1464
1465	! call writediagfi(ngrid,"ASRcs","absorbed stellar rad (cs).","W m-2",2,fluxabs_sw1)
1466	! call writediagfi(ngrid,"OLRcs","outgoing longwave rad (cs).","W m-2",2,fluxtop_lw1)
1467	! call writediagfi(ngrid,"fluxsurfsw","sw surface flux.","W m-2",2,fluxsurf_sw)
1468	! call writediagfi(ngrid,"fluxsurflw","lw back radiation.","W m-2",2,fluxsurf_lw)
1469	! call writediagfi(ngrid,"fluxsurfswcs","sw surface flux (cs).","W m-2",2,fluxsurf_sw1)
1470	! call writediagfi(ngrid,"fluxsurflwcs","lw back radiation (cs).","W m-2",2,fluxsurf_lw1)
1471
1472
1473	call writediagfi(ngrid,"GND","heat flux from ground","W m-2",2,fluxgrd)
1474
1475	call writediagfi(ngrid,"DYN","dynamical heat input","W m-2",2,fluxdyn)
1476
1477	endif ! end of 'callrad'
1478
1479	if(enertest) then
1480
1481	if (calldifv) then
1482
1483	call writediagfi(ngrid,"q2","turbulent kinetic energy","J.kg^-1",3,q2)
1484	call writediagfi(ngrid,"sensibFlux","sensible heat flux","w.m^-2",2,sensibFlux)
1485
1486	! call writediagfi(ngrid,"dEzdiff","turbulent diffusion heating (-sensible flux)","w.m^-2",3,dEzdiff)
1487	! call writediagfi(ngrid,"dEdiff","integrated turbulent diffusion heating (-sensible flux)","w.m^-2",2,dEdiff)
1488	! call writediagfi(ngrid,"dEdiffs","In TurbDiff (correc rad+latent heat) surf nrj change","w.m^-2",2,dEdiffs)
1489
1490	endif
1491
1492	if (corrk) then
1493	call writediagfi(ngrid,"dEzradsw","radiative heating","w.m^-2",3,dEzradsw)
1494	call writediagfi(ngrid,"dEzradlw","radiative heating","w.m^-2",3,dEzradlw)
1495	endif
1496
1497	endif ! end of 'enertest'
1498
1499	! Temporary inclusions for winds diagnostics.
1500	call writediagfi(ngrid,"zdudif","Turbdiff tend. zon. wind","m s-2",3,zdudif)
1501	call writediagfi(ngrid,"zdudyn","Dyn. tend. zon. wind","m s-2",3,zdudyn)
1502
1503	! Temporary inclusions for heating diagnostics.
1504	call writediagfi(ngrid,"zdtsw","SW heating","T s-1",3,zdtsw)
1505	call writediagfi(ngrid,"zdtlw","LW heating","T s-1",3,zdtlw)
1506	call writediagfi(ngrid,"dtrad","radiative heating","K s-1",3,dtrad)
1507	call writediagfi(ngrid,"zdtdyn","Dyn. heating","T s-1",3,zdtdyn)
1508
1509	! For Debugging.
1510	call writediagfi(ngrid,'pphi','Geopotential',' ',3,pphi)
1511
1512
1513	! Output tracers.
1514	if (tracer) then
1515
1516	if (callmufi) then
1517	! Microphysical tracers are expressed in unit/m3.
1518	! convert X.kg-1 --> X.m-3 (whereas for optics was -> X.m-2)
1519	i2e(:,:) = ( pplev(:,1:nlayer)-pplev(:,2:nlayer+1) ) / gzlat(:,1:nlayer) /(zzlev(:,2:nlayer+1)-zzlev(:,1:nlayer))
1520
1521	#ifdef USE_QTEST
1522	! Microphysical tracers passed through dyn+phys(except mufi)
1523	call writediagfi(ngrid,"mu_m0as_dp","Dynphys only spherical mode 0th order moment",'m-3',3,zq(:,:,micro_indx(1))*i2e)
1524	call writediagfi(ngrid,"mu_m3as_dp","Dynphys only spherical mode 3rd order moment",'m3/m3',3,zq(:,:,micro_indx(2))*i2e)
1525	call writediagfi(ngrid,"mu_m0af_dp","Dynphys only fractal mode 0th order moment",'m-3',3,zq(:,:,micro_indx(3))*i2e)
1526	call writediagfi(ngrid,"mu_m3af_dp","Dynphys only fractal mode 3rd order moment",'m3/m3',3,zq(:,:,micro_indx(4))*i2e)
1527	! Microphysical tracers passed through mufi only
1528	call writediagfi(ngrid,"mu_m0as_mo","Mufi only spherical mode 0th order moment",'m-3',3,tpq(:,:,micro_indx(1))*i2e)
1529	call writediagfi(ngrid,"mu_m3as_mo","Mufi only spherical mode 3rd order moment",'m3/m3',3,tpq(:,:,micro_indx(2))*i2e)
1530	call writediagfi(ngrid,"mu_m0af_mo","Mufi only fractal mode 0th order moment",'m-3',3,tpq(:,:,micro_indx(3))*i2e)
1531	call writediagfi(ngrid,"mu_m3af_mo","Mufi only fractal mode 3rd order moment",'m3/m3',3,tpq(:,:,micro_indx(4))*i2e)
1532	#else
1533	call writediagfi(ngrid,"mu_m0as","Spherical mode 0th order moment",'m-3',3,zq(:,:,micro_indx(1))*i2e)
1534	call writediagfi(ngrid,"mu_m3as","Spherical mode 3rd order moment",'m3/m3',3,zq(:,:,micro_indx(2))*i2e)
1535	call writediagfi(ngrid,"mu_m0af","Fractal mode 0th order moment",'m-3',3,zq(:,:,micro_indx(3))*i2e)
1536	call writediagfi(ngrid,"mu_m3af","Fractal mode 3rd order moment",'m3/m3',3,zq(:,:,micro_indx(4))*i2e)
1537	#endif
1538
1539	! Microphysical diagnostics
1540	call writediagfi(ngrid,"mmd_aer_prec","Total aerosols precipitations",'m',2,mmd_aer_prec)
1541	call writediagfi(ngrid,"mmd_aer_s_flux","Spherical aerosols sedimentation flux",'kg.m-2.s-1',3,mmd_aer_s_flux)
1542	call writediagfi(ngrid,"mmd_aer_f_flux","Fractal aerosols sedimentation flux",'kg.m-2.s-1',3,mmd_aer_f_flux)
1543	call writediagfi(ngrid,"mmd_rc_sph","Spherical mode caracteristic radius",'m',3,mmd_rc_sph)
1544	call writediagfi(ngrid,"mmd_rc_fra","Fractal mode caracteristic radius",'m',3,mmd_rc_fra)
1545
1546	endif ! end of 'callmufi'
1547
1548	! Chemical tracers
1549	if (callchim) then
1550	do iq=1,nkim
1551	call writediagfi(ngrid,cnames(iq),cnames(iq),'mol/mol',3,zq(:,:,iq+nmicro)/rat_mmol(iq+nmicro))
1552	enddo
1553	call writediagfi(ngrid,"evapCH4","Surface CH4 pseudo-evaporation rate",'mol/mol/s',2,dycevapCH4)
1554	endif
1555
1556	endif ! end of 'tracer'
1557
1558	! XIOS outputs
1559	#ifdef CPP_XIOS
1560	! Send fields to XIOS: (NB these fields must also be defined as
1561	! <field id="..." /> in context_lmdz_physics.xml to be correctly used)
1562	CALL send_xios_field("ls",zls*180./pi)
1563	CALL send_xios_field("lss",zlss*180./pi)
1564	CALL send_xios_field("RA",right_ascen*180./pi)
1565	CALL send_xios_field("Declin",declin*180./pi)
1566
1567	! Total energy balance diagnostics
1568	if (callrad.and.(.not.newtonian)) then
1569	CALL send_xios_field("ISR_TOA",fluxtop_dn)
1570	CALL send_xios_field("OLR_TOA",fluxtop_lw)
1571	endif
1572
1573	CALL send_xios_field("area",cell_area)
1574	CALL send_xios_field("pphi",pphi)
1575	CALL send_xios_field("pphis",phisfi)
1576
1577	CALL send_xios_field("ps",ps)
1578	CALL send_xios_field("tsurf",tsurf)
1579
1580	if(enertest) then
1581	if (calldifv) then
1582	CALL send_xios_field("sensibFlux",sensibFlux)
1583	endif
1584	endif
1585
1586	CALL send_xios_field("temp",zt)
1587	CALL send_xios_field("teta",zh)
1588	CALL send_xios_field("u",zu)
1589	CALL send_xios_field("v",zv)
1590	CALL send_xios_field("w",pw)
1591	CALL send_xios_field("p",pplay)
1592
1593	! Winds diagnostics.
1594	CALL send_xios_field("dudif",zdudif)
1595	CALL send_xios_field("dudyn",zdudyn)
1596
1597	CALL send_xios_field("horizwind",zhorizwind)
1598
1599	! Heating diagnostics.
1600	CALL send_xios_field("dtsw",zdtsw)
1601	CALL send_xios_field("dtlw",zdtlw)
1602	CALL send_xios_field("dtrad",dtrad)
1603	CALL send_xios_field("dtdyn",zdtdyn)
1604
1605	! Chemical tracers
1606	if (callchim) then
1607
1608	! Advected fields
1609	do iq=1,nkim
1610	CALL send_xios_field(trim(cnames(iq)),zq(:,:,iq+nmicro)/rat_mmol(iq+nmicro)) ! kg/kg -> mol/mol
1611	enddo
1612
1613	! Upper chemistry fields
1614	do iq=1,nkim
1615	CALL send_xios_field(trim(cnames(iq))//"_up",ykim_up(iq,:,:)) ! mol/mol
1616	enddo
1617
1618	! Append fields in ykim_tot for output on the total vertical grid (0->1300km)
1619	do iq=1,nkim
1620
1621	! GCM levels
1622	do l=1,nlayer
1623	ykim_tot(iq,:,l) = zq(:,l,iq+nmicro)/rat_mmol(iq+nmicro)
1624	enddo
1625	! Upper levels
1626	do l=1,nlaykim_up
1627	ykim_tot(iq,:,nlayer+l) = ykim_up(iq,:,l)
1628	enddo
1629
1630	CALL send_xios_field(trim(cnames(iq))//"_tot",ykim_tot(iq,:,:)) ! mol/mol
1631
1632	enddo
1633
1634	! Condensation tendencies ( mol/mol/s )
1635	CALL send_xios_field("dqcond_CH4",dyccond(:,:,7+nmicro))
1636	CALL send_xios_field("dqcond_C2H2",dyccond(:,:,10+nmicro))
1637	CALL send_xios_field("dqcond_C2H4",dyccond(:,:,12+nmicro))
1638	CALL send_xios_field("dqcond_C2H6",dyccond(:,:,14+nmicro))
1639	CALL send_xios_field("dqcond_C3H6",dyccond(:,:,17+nmicro))
1640	CALL send_xios_field("dqcond_C4H4",dyccond(:,:,21+nmicro))
1641	CALL send_xios_field("dqcond_CH3CCH",dyccond(:,:,24+nmicro))
1642	CALL send_xios_field("dqcond_C3H8",dyccond(:,:,25+nmicro))
1643	CALL send_xios_field("dqcond_C4H2",dyccond(:,:,26+nmicro))
1644	CALL send_xios_field("dqcond_C4H6",dyccond(:,:,27+nmicro))
1645	CALL send_xios_field("dqcond_C4H10",dyccond(:,:,28+nmicro))
1646	CALL send_xios_field("dqcond_AC6H6",dyccond(:,:,29+nmicro))
1647	CALL send_xios_field("dqcond_HCN",dyccond(:,:,36+nmicro))
1648	CALL send_xios_field("dqcond_CH3CN",dyccond(:,:,40+nmicro))
1649	CALL send_xios_field("dqcond_HC3N",dyccond(:,:,42+nmicro))
1650	CALL send_xios_field("dqcond_NCCN",dyccond(:,:,43+nmicro))
1651	CALL send_xios_field("dqcond_C4N2",dyccond(:,:,44+nmicro))
1652
1653	! Pseudo-evaporation flux (mol/mol/s)
1654	CALL send_xios_field("evapCH4",dycevapCH4(:))
1655
1656	endif ! of 'if callchim'
1657
1658	! Microphysical tracers
1659	if (callmufi) then
1660	CALL send_xios_field("mu_m0as",zq(:,:,micro_indx(1))*i2e)
1661	CALL send_xios_field("mu_m3as",zq(:,:,micro_indx(2))*i2e)
1662	CALL send_xios_field("mu_m0af",zq(:,:,micro_indx(3))*i2e)
1663	CALL send_xios_field("mu_m3af",zq(:,:,micro_indx(4))*i2e)
1664	endif
1665
1666	if (lastcall.and.is_omp_master) then
1667	write(,) "physiq: call xios_context_finalize"
1668	call xios_context_finalize
1669	endif
1670	#endif
1671
1672	icount=icount+1
1673
1674	end subroutine physiq
1675
1676	end module physiq_mod

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