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physiq_mod.F90 @ 1914

Last change on this file since 1914 was 1914, checked in by jvatant, 7 years ago

Ooops just realized that in r1908 physiq_mod.F90
hasn't been pushed ...
+ Also add "cosmetic" changes for arrays (1:nlayer)->(:)
--JVO

Property svn:executable set to *
Property svn:mergeinfo set to
/trunk/LMDZ.GENERIC/libf/phystd/physiq_mod.F90 merged eligible

File size: 62.3 KB

Line
1	#define USE_QTEST
2
3	module physiq_mod
4
5	implicit none
6
7	contains
8
9	subroutine physiq(ngrid,nlayer,nq, &
10	nametrac, &
11	firstcall,lastcall, &
12	pday,ptime,ptimestep, &
13	pplev,pplay,pphi, &
14	pu,pv,pt,pq, &
15	flxw, &
16	pdu,pdv,pdt,pdq,pdpsrf)
17
18	use radinc_h, only : L_NSPECTI,L_NSPECTV
19	use radcommon_h, only: sigma, glat, grav, BWNV
20	use surfdat_h, only: phisfi, zmea, zstd, zsig, zgam, zthe
21	use comchem_h, only: nkim
22	use comdiurn_h, only: coslat, sinlat, coslon, sinlon
23	use comsaison_h, only: mu0, fract, dist_star, declin, right_ascen
24	use comsoil_h, only: nsoilmx, layer, mlayer, inertiedat
25	use datafile_mod, only: datadir, corrkdir, banddir
26	use geometry_mod, only: latitude, longitude, cell_area
27	USE comgeomfi_h, only: totarea, totarea_planet
28	USE tracer_h
29	use time_phylmdz_mod, only: ecritphy, iphysiq, nday
30	use phyetat0_mod, only: phyetat0
31	use phyredem, only: physdem0, physdem1
32	use planetwide_mod, only: planetwide_minval,planetwide_maxval,planetwide_sumval
33	use mod_phys_lmdz_para, only : is_master
34	use planete_mod, only: apoastr, periastr, year_day, peri_day, &
35	obliquit, nres, z0
36	use comcstfi_mod, only: pi, g, rcp, r, rad, mugaz, cpp
37	use time_phylmdz_mod, only: daysec
38	use logic_mod, only: moyzon_ch
39	use moyzon_mod, only: tmoy, playmoy, zphibar, zphisbar, zplevbar, &
40	zplaybar, zzlevbar, zzlaybar, ztfibar, zqfibar
41	use callkeys_mod
42	use vertical_layers_mod, only: presnivs, pseudoalt
43	use ioipsl_getin_p_mod, only: getin_p
44	use mod_phys_lmdz_omp_data, ONLY: is_omp_master
45	#ifdef CPP_XIOS
46	use xios_output_mod, only: initialize_xios_output, &
47	update_xios_timestep, &
48	send_xios_field
49	use wxios, only: wxios_context_init, xios_context_finalize
50	#endif
51	use MMP_OPTICS
52	implicit none
53
54
55	!==================================================================
56	!
57	! Purpose
58	! -------
59	! Central subroutine for all the physics parameterisations in the
60	! universal model. Originally adapted from the Mars LMDZ model.
61	!
62	! The model can be run without or with tracer transport
63	! depending on the value of "tracer" in file "callphys.def".
64	!
65	!
66	! It includes:
67	!
68	! I. Initialization :
69	! I.1 Firstcall initializations.
70	! I.2 Initialization for every call to physiq.
71	!
72	! II. Compute radiative transfer tendencies (longwave and shortwave) :
73	! II.a Option 1 : Call correlated-k radiative transfer scheme.
74	! II.b Option 2 : Call Newtonian cooling scheme.
75	! II.c Option 3 : Atmosphere has no radiative effect.
76	!
77	! III. Vertical diffusion (turbulent mixing) :
78	!
79	! IV. Dry Convective adjustment :
80	!
81	! V. Tracers
82	! V.1. Chemistry
83	! V.2. Microphysics
84	! V.3. Updates (pressure variations, surface budget).
85	! V.4. Surface Tracer Update.
86	!
87	! VI. Surface and sub-surface soil temperature.
88	!
89	! VII. Perform diagnostics and write output files.
90	!
91	!
92	! arguments
93	! ---------
94	!
95	! INPUT
96	! -----
97	!
98	! ngrid Size of the horizontal grid.
99	! nlayer Number of vertical layers.
100	! nq Number of advected fields.
101	! nametrac Name of corresponding advected fields.
102	!
103	! firstcall True at the first call.
104	! lastcall True at the last call.
105	!
106	! pday Number of days counted from the North. Spring equinoxe.
107	! ptime Universal time (0<ptime<1): ptime=0.5 at 12:00 UT.
108	! ptimestep timestep (s).
109	!
110	! pplay(ngrid,nlayer) Pressure at the middle of the layers (Pa).
111	! pplev(ngrid,nlayer+1) Intermediate pressure levels (Pa).
112	! pphi(ngrid,nlayer) Geopotential at the middle of the layers (m2.s-2).
113	!
114	! pu(ngrid,nlayer) u, zonal component of the wind (ms-1).
115	! pv(ngrid,nlayer) v, meridional component of the wind (ms-1).
116	!
117	! pt(ngrid,nlayer) Temperature (K).
118	!
119	! pq(ngrid,nlayer,nq) Advected fields.
120	!
121	! pudyn(ngrid,nlayer) \
122	! pvdyn(ngrid,nlayer) \ Dynamical temporal derivative for the
123	! ptdyn(ngrid,nlayer) / corresponding variables.
124	! pqdyn(ngrid,nlayer,nq) /
125	! flxw(ngrid,nlayer) vertical mass flux (kg/s) at layer lower boundary
126	!
127	! OUTPUT
128	! ------
129	!
130	! pdu(ngrid,nlayer) \
131	! pdv(ngrid,nlayer) \ Temporal derivative of the corresponding
132	! pdt(ngrid,nlayer) / variables due to physical processes.
133	! pdq(ngrid,nlayer) /
134	! pdpsrf(ngrid) /
135	!
136	!
137	! Authors
138	! -------
139	! Frederic Hourdin 15/10/93
140	! Francois Forget 1994
141	! Christophe Hourdin 02/1997
142	! Subroutine completely rewritten by F. Forget (01/2000)
143	! Water ice clouds: Franck Montmessin (update 06/2003)
144	! Radiatively active tracers: J.-B. Madeleine (10/2008-06/2009)
145	! New correlated-k radiative scheme: R. Wordsworth (2009)
146	! Many specifically Martian subroutines removed: R. Wordsworth (2009)
147	! Improved water cycle: R. Wordsworth / B. Charnay (2010)
148	! To F90: R. Wordsworth (2010)
149	! New turbulent diffusion scheme: J. Leconte (2012)
150	! Loops converted to F90 matrix format: J. Leconte (2012)
151	! No more ngridmx/nqmx, F90 commons and adaptation to parallel: A. Spiga (2012)
152	! Purge of the code : M. Turbet (2015)
153	! Fork for Titan : J. Vatant d'Ollone (2017)
154	! + clean of all too-generic (ocean, water, co2 ...) routines
155	! + Titan's chemistry
156	! Microphysical moment model - J.Burgalat / J.Vatant d'Ollone (2017-2018)
157	!============================================================================================
158
159
160	! 0. Declarations :
161	! ------------------
162
163	include "netcdf.inc"
164
165	! Arguments :
166	! -----------
167
168	! INPUTS:
169	! -------
170
171
172	integer,intent(in) :: ngrid ! Number of atmospheric columns.
173	integer,intent(in) :: nlayer ! Number of atmospheric layers.
174	integer,intent(in) :: nq ! Number of tracers.
175	character*20,intent(in) :: nametrac(nq) ! Names of the tracers taken from dynamics.
176
177	logical,intent(in) :: firstcall ! Signals first call to physics.
178	logical,intent(in) :: lastcall ! Signals last call to physics.
179
180	real,intent(in) :: pday ! Number of elapsed sols since reference Ls=0.
181	real,intent(in) :: ptime ! "Universal time", given as fraction of sol (e.g.: 0.5 for noon).
182	real,intent(in) :: ptimestep ! Physics timestep (s).
183	real,intent(in) :: pplev(ngrid,nlayer+1) ! Inter-layer pressure (Pa).
184	real,intent(in) :: pplay(ngrid,nlayer) ! Mid-layer pressure (Pa).
185	real,intent(in) :: pphi(ngrid,nlayer) ! Geopotential at mid-layer (m2s-2).
186	real,intent(in) :: pu(ngrid,nlayer) ! Zonal wind component (m/s).
187	real,intent(in) :: pv(ngrid,nlayer) ! Meridional wind component (m/s).
188	real,intent(in) :: pt(ngrid,nlayer) ! Temperature (K).
189	real,intent(in) :: pq(ngrid,nlayer,nq) ! Tracers (kg/kg_of_air).
190	real,intent(in) :: flxw(ngrid,nlayer) ! Vertical mass flux (ks/s) at lower boundary of layer
191
192	! OUTPUTS:
193	! --------
194
195	! Physical tendencies :
196
197	real,intent(out) :: pdu(ngrid,nlayer) ! Zonal wind tendencies (m/s/s).
198	real,intent(out) :: pdv(ngrid,nlayer) ! Meridional wind tendencies (m/s/s).
199	real,intent(out) :: pdt(ngrid,nlayer) ! Temperature tendencies (K/s).
200	real,intent(out) :: pdq(ngrid,nlayer,nq) ! Tracer tendencies (kg/kg_of_air/s).
201	real,intent(out) :: pdpsrf(ngrid) ! Surface pressure tendency (Pa/s).
202
203	! Local saved variables:
204	! ----------------------
205
206	integer,save :: day_ini ! Initial date of the run (sol since Ls=0).
207	integer,save :: icount ! Counter of calls to physiq during the run.
208	!$OMP THREADPRIVATE(day_ini,icount)
209
210	real, dimension(:),allocatable,save :: tsurf ! Surface temperature (K).
211	real, dimension(:,:),allocatable,save :: tsoil ! Sub-surface temperatures (K).
212	real, dimension(:,:),allocatable,save :: albedo ! Surface Spectral albedo. By MT2015.
213	real, dimension(:),allocatable,save :: albedo_equivalent ! Spectral Mean albedo.
214
215	!$OMP THREADPRIVATE(tsurf,tsoil,albedo,albedo_equivalent)
216
217	real,dimension(:),allocatable,save :: albedo_bareground ! Bare Ground Albedo. By MT 2015.
218
219	!$OMP THREADPRIVATE(albedo_bareground)
220
221	real,dimension(:),allocatable,save :: emis ! Thermal IR surface emissivity.
222	real,dimension(:,:),allocatable,save :: dtrad ! Net atmospheric radiative heating rate (K.s-1).
223	real,dimension(:),allocatable,save :: fluxrad_sky ! Radiative flux from sky absorbed by surface (W.m-2).
224	real,dimension(:),allocatable,save :: fluxrad ! Net radiative surface flux (W.m-2).
225	real,dimension(:),allocatable,save :: capcal ! Surface heat capacity (J m-2 K-1).
226	real,dimension(:),allocatable,save :: fluxgrd ! Surface conduction flux (W.m-2).
227	real,dimension(:,:),allocatable,save :: qsurf ! Tracer on surface (e.g. kg.m-2).
228	real,dimension(:,:),allocatable,save :: q2 ! Turbulent Kinetic Energy.
229
230	!$OMP THREADPRIVATE(emis,dtrad,fluxrad_sky,fluxrad,capcal,fluxgrd,qsurf,q2)
231
232
233	! Local variables :
234	! -----------------
235
236	real zh(ngrid,nlayer) ! Potential temperature (K).
237	real pw(ngrid,nlayer) ! Vertical velocity (m/s). (NOTE : >0 WHEN DOWNWARDS !!)
238
239	integer l,ig,ierr,iq,nw,isoil
240
241	! FOR DIAGNOSTIC :
242
243	real,dimension(:),allocatable,save :: fluxsurf_lw ! Incident Long Wave (IR) surface flux (W.m-2).
244	real,dimension(:),allocatable,save :: fluxsurf_sw ! Incident Short Wave (stellar) surface flux (W.m-2).
245	real,dimension(:),allocatable,save :: fluxsurfabs_sw ! Absorbed Short Wave (stellar) flux by the surface (W.m-2).
246	real,dimension(:),allocatable,save :: fluxtop_lw ! Outgoing LW (IR) flux to space (W.m-2).
247	real,dimension(:),allocatable,save :: fluxabs_sw ! Absorbed SW (stellar) flux (W.m-2).
248	real,dimension(:),allocatable,save :: fluxtop_dn ! Incoming SW (stellar) radiation at the top of the atmosphere (W.m-2).
249	real,dimension(:),allocatable,save :: fluxdyn ! Horizontal heat transport by dynamics (W.m-2).
250	real,dimension(:,:),allocatable,save :: OLR_nu ! Outgoing LW radiation in each band (Normalized to the band width (W/m2/cm-1)).
251	real,dimension(:,:),allocatable,save :: OSR_nu ! Outgoing SW radiation in each band (Normalized to the band width (W/m2/cm-1)).
252	real,dimension(:,:),allocatable,save :: zdtlw ! LW heating tendencies (K/s).
253	real,dimension(:,:),allocatable,save :: zdtsw ! SW heating tendencies (K/s).
254	real,dimension(:),allocatable,save :: sensibFlux ! Turbulent flux given by the atmosphere to the surface (W.m-2).
255
256	!$OMP THREADPRIVATE(fluxsurf_lw,fluxsurf_sw,fluxsurfabs_sw,fluxtop_lw,fluxabs_sw,fluxtop_dn,fluxdyn,OLR_nu,OSR_nu,&
257
258	!$OMP zdtlw,zdtsw,sensibFlux)
259
260	real zls ! Solar longitude (radians).
261	real zlss ! Sub solar point longitude (radians).
262	real zday ! Date (time since Ls=0, calculated in sols).
263	real zzlay(ngrid,nlayer) ! Altitude at the middle of the atmospheric layers.
264	real zzlev(ngrid,nlayer+1) ! Altitude at the atmospheric layer boundaries.
265
266	! TENDENCIES due to various processes :
267
268	! For Surface Temperature : (K/s)
269	real zdtsurf(ngrid) ! Cumulated tendencies.
270	real zdtsurfmr(ngrid) ! Mass_redistribution routine.
271	real zdtsdif(ngrid) ! Turbdiff/vdifc routines.
272
273	! For Atmospheric Temperatures : (K/s)
274	real zdtdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
275	real zdtmr(ngrid,nlayer) ! Mass_redistribution routine.
276	real zdtsw1(ngrid,nlayer), zdtlw1(ngrid,nlayer) ! Callcorrk routine.
277
278	! For Surface Tracers : (kg/m2/s)
279	real dqsurf(ngrid,nq) ! Cumulated tendencies.
280	real zdqsdif(ngrid,nq) ! Turbdiff/vdifc routines.
281	real zdqsurfmr(ngrid,nq) ! Mass_redistribution routine.
282
283	! For Tracers : (kg/kg_of_air/s)
284	real zdqadj(ngrid,nlayer,nq) ! Convadj routine.
285	real zdqdif(ngrid,nlayer,nq) ! Turbdiff/vdifc routines.
286	real zdqevap(ngrid,nlayer) ! Turbdiff routine.
287	real zdqmr(ngrid,nlayer,nq) ! Mass_redistribution routine.
288
289	real zdqchi(ngrid,nlayer,nq) ! Chemical tendency ( chemistry routine ).
290	real zdqcond(ngrid,nlayer,nq) ! Condensation tendency ( chemistry routine ).
291
292	real zdqmufi(ngrid,nlayer,nq) ! Microphysical tendency.
293
294	! For Winds : (m/s/s)
295	real zdvadj(ngrid,nlayer),zduadj(ngrid,nlayer) ! Convadj routine.
296	real zdumr(ngrid,nlayer),zdvmr(ngrid,nlayer) ! Mass_redistribution routine.
297	real zdvdif(ngrid,nlayer),zdudif(ngrid,nlayer) ! Turbdiff/vdifc routines.
298	real zdhdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
299	real zdhadj(ngrid,nlayer) ! Convadj routine.
300
301	! For Pressure and Mass :
302	real zdmassmr(ngrid,nlayer) ! Atmospheric Mass tendency for mass_redistribution (kg_of_air/m2/s).
303	real zdmassmr_col(ngrid) ! Atmospheric Column Mass tendency for mass_redistribution (kg_of_air/m2/s).
304	real zdpsrfmr(ngrid) ! Pressure tendency for mass_redistribution routine (Pa/s).
305
306
307
308	! Local variables for LOCAL CALCULATIONS:
309	! ---------------------------------------
310	real zflubid(ngrid)
311	real zplanck(ngrid),zpopsk(ngrid,nlayer)
312	real ztim1,ztim2,ztim3, z1,z2
313	real ztime_fin
314	real zdh(ngrid,nlayer)
315	real gmplanet
316	real taux(ngrid),tauy(ngrid)
317
318
319
320	! local variables for DIAGNOSTICS : (diagfi & stat)
321	! -------------------------------------------------
322	real ps(ngrid) ! Surface Pressure.
323	real zt(ngrid,nlayer) ! Atmospheric Temperature.
324	real zu(ngrid,nlayer),zv(ngrid,nlayer) ! Zonal and Meridional Winds.
325	real zq(ngrid,nlayer,nq) ! Atmospheric Tracers.
326	real zdtadj(ngrid,nlayer) ! Convadj Diagnostic.
327	real zdtdyn(ngrid,nlayer) ! Dynamical Heating (K/s).
328	real zdudyn(ngrid,nlayer) ! Dynamical Zonal Wind tendency (m.s-2).
329	real,allocatable,dimension(:,:),save :: ztprevious ! Previous loop Atmospheric Temperature (K) ! Useful for Dynamical Heating calculation.
330	real,allocatable,dimension(:,:),save :: zuprevious ! Previous loop Zonal Wind (m.s-1) ! Useful for Zonal Wind tendency calculation.
331	!$OMP THREADPRIVATE(ztprevious,zuprevious)
332
333	real vmr(ngrid,nlayer) ! volume mixing ratio
334	real time_phys
335
336	real ISR,ASR,OLR,GND,DYN,GSR,Ts1,Ts2,Ts3,TsS ! for Diagnostic.
337
338	! to test energy conservation (RW+JL)
339	real mass(ngrid,nlayer),massarea(ngrid,nlayer)
340	real dEtot, dEtots, AtmToSurf_TurbFlux
341	real,save :: dEtotSW, dEtotsSW, dEtotLW, dEtotsLW
342	!$OMP THREADPRIVATE(dEtotSW, dEtotsSW, dEtotLW, dEtotsLW)
343	real dEzRadsw(ngrid,nlayer),dEzRadlw(ngrid,nlayer),dEzdiff(ngrid,nlayer)
344	real dEdiffs(ngrid),dEdiff(ngrid)
345
346	!JL12 conservation test for mean flow kinetic energy has been disabled temporarily
347
348	real dItot, dItot_tmp, dVtot, dVtot_tmp
349
350	real dWtot, dWtot_tmp, dWtots, dWtots_tmp
351
352
353	! For Clear Sky Case.
354	real fluxsurf_lw1(ngrid), fluxsurf_sw1(ngrid), fluxsurfabs_sw1(ngrid) ! For SW/LW flux.
355	real fluxtop_lw1(ngrid), fluxabs_sw1(ngrid) ! For SW/LW flux.
356	real albedo_equivalent1(ngrid) ! For Equivalent albedo calculation.
357	real tf, ntf
358
359	real,allocatable,dimension(:,:),save :: qsurf_hist
360	!$OMP THREADPRIVATE(qsurf_hist)
361
362	! Miscellaneous :
363	character(len=10) :: tmp1
364	character(len=10) :: tmp2
365
366	! Local variables for Titan chemistry and microphysics
367	! ----------------------------------------------------
368
369	real,save :: ctimestep ! Chemistry timestep (s)
370	!$OMP THREADPRIVATE(ctimestep)
371
372	! Chemical tracers in molar fraction
373	real, dimension(ngrid,nlayer,nkim) :: ychim ! (mol/mol)
374
375	! Molar fraction tendencies ( chemistry and condensation ) for tracers (mol/mol/s)
376	real, dimension(ngrid,nlayer,nq) :: dyccond ! All tracers, we want to use indx on it.
377	real, dimension(:,:,:), allocatable, save :: dycchi ! Only for chem tracers. Saved since chemistry is not called every step.
378	!$OMP THREADPRIVATE(dycchi)
379
380	! Saturation profiles
381	real, dimension(:,:), allocatable, save :: qysat ! (mol/mol)
382	!$OMP THREADPRIVATE(qysat)
383	real temp_eq(nlayer), press_eq(nlayer) ! Planetary averages for the init. of saturation profiles (K,mbar)
384
385	! Surface methane tank
386	real,dimension(:),allocatable,save :: tankCH4 ! Depth of surface methane tank (m)
387	!$OMP THREADPRIVATE(tankCH4)
388
389	! -----****----- FOR MUPHYS OPTICS -----****-----
390	integer :: i,j
391	real :: pqo(ngrid,nlayer,nq) ! Tracers for the optics (X/m2).
392	real :: i2e(nlayer) ! int 2 ext factor
393	! -----****----- END FOR MUPHYS OPTICS -----****-----
394
395	real,save,dimension(:,:,:), allocatable :: tpq ! Tracers for decoupled microphysical tests ( temporary in 01/18 )
396	!$OMP THREADPRIVATE(tpq)
397
398
399	!-----------------------------------------------------------------------------
400	! Interface to calmufi
401	! --> needed in order to pass assumed-shape arrays. Otherwise we must put calmufi in a module
402	! (to have an explicit interface generated by the compiler).
403	! Or one can put calmufi in MMP_GCM module (in muphytitan).
404	INTERFACE
405	SUBROUTINE calmufi(dt, plev, zlev, play, zlay, temp, pq, zdqfi, zdq)
406	REAL(kind=8), INTENT(IN) :: dt !! Physics timestep (s).
407	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: plev !! Pressure levels (Pa).
408	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: zlev !! Altitude levels (m).
409	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: play !! Pressure layers (Pa).
410	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: zlay !! Altitude at the center of each layer (m).
411	REAL(kind=8), DIMENSION(:,:), INTENT(IN) :: temp !! Temperature at the center of each layer (K).
412	REAL(kind=8), DIMENSION(:,:,:), INTENT(IN) :: pq !! Tracers ($kg.kg^{-1}}$).
413	REAL(kind=8), DIMENSION(:,:,:), INTENT(IN) :: zdqfi !! Tendency from former processes for tracers ($kg.kg^{-1}}$).
414	REAL(kind=8), DIMENSION(:,:,:), INTENT(OUT) :: zdq !! Microphysical tendency for tracers ($kg.kg^{-1}}$).
415	END SUBROUTINE calmufi
416	END INTERFACE
417
418	!==================================================================================================
419
420	! -----------------
421	! I. INITIALISATION
422	! -----------------
423
424	! --------------------------------
425	! I.1 First Call Initialisation.
426	! --------------------------------
427	if (firstcall) then
428	allocate(tpq(ngrid,nlayer,nq))
429	tpq(:,:,:) = pq(:,:,:)
430
431	! Initialisation of nmicro as well as tracers names, indexes ...
432	if (ngrid.ne.1) then ! Already done in rcm1d
433	call initracer2(nq,nametrac)
434	endif
435
436	! Allocate saved arrays.
437	ALLOCATE(tsurf(ngrid))
438	ALLOCATE(tsoil(ngrid,nsoilmx))
439	ALLOCATE(albedo(ngrid,L_NSPECTV))
440	ALLOCATE(albedo_equivalent(ngrid))
441	ALLOCATE(albedo_bareground(ngrid))
442	ALLOCATE(emis(ngrid))
443	ALLOCATE(dtrad(ngrid,nlayer))
444	ALLOCATE(fluxrad_sky(ngrid))
445	ALLOCATE(fluxrad(ngrid))
446	ALLOCATE(capcal(ngrid))
447	ALLOCATE(fluxgrd(ngrid))
448	ALLOCATE(qsurf(ngrid,nq))
449	ALLOCATE(q2(ngrid,nlayer+1))
450	ALLOCATE(tankCH4(ngrid))
451	ALLOCATE(ztprevious(ngrid,nlayer))
452	ALLOCATE(zuprevious(ngrid,nlayer))
453	ALLOCATE(qsurf_hist(ngrid,nq))
454	ALLOCATE(fluxsurf_lw(ngrid))
455	ALLOCATE(fluxsurf_sw(ngrid))
456	ALLOCATE(fluxsurfabs_sw(ngrid))
457	ALLOCATE(fluxtop_lw(ngrid))
458	ALLOCATE(fluxabs_sw(ngrid))
459	ALLOCATE(fluxtop_dn(ngrid))
460	ALLOCATE(fluxdyn(ngrid))
461	ALLOCATE(OLR_nu(ngrid,L_NSPECTI))
462	ALLOCATE(OSR_nu(ngrid,L_NSPECTV))
463	ALLOCATE(sensibFlux(ngrid))
464	ALLOCATE(zdtlw(ngrid,nlayer))
465	ALLOCATE(zdtsw(ngrid,nlayer))
466
467	! This is defined in comsaison_h
468	ALLOCATE(mu0(ngrid))
469	ALLOCATE(fract(ngrid))
470	! This is defined in radcommon_h
471	ALLOCATE(glat(ngrid))
472
473
474	! Variables set to 0
475	! ~~~~~~~~~~~~~~~~~~
476	dtrad(:,:) = 0.0
477	fluxrad(:) = 0.0
478	zdtsw(:,:) = 0.0
479	zdtlw(:,:) = 0.0
480
481	! Initialize setup for correlated-k radiative transfer
482	! JVO 17 : Was in callcorrk firstcall, but we need spectral intervals for microphysics
483	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
484
485	if (corrk) then
486
487	call system('rm -f surf_vals_long.out')
488
489	write( tmp1, '(i3)' ) L_NSPECTI
490	write( tmp2, '(i3)' ) L_NSPECTV
491	banddir=trim(adjustl(tmp1))//'x'//trim(adjustl(tmp2))
492	banddir=trim(adjustl(corrkdir))//'/'//trim(adjustl(banddir))
493
494	call setspi ! Basic infrared properties.
495	call setspv ! Basic visible properties.
496	call sugas_corrk ! Set up gaseous absorption properties.
497
498	OLR_nu(:,:) = 0.
499	OSR_nu(:,:) = 0.
500
501	endif
502
503	! Initialize names, timestep and saturation profiles for chemistry
504	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
505
506	if ( callchim ) then
507
508	if ( moyzon_ch .and. ngrid.eq.1 ) then
509	print *, "moyzon_ch=",moyzon_ch," and ngrid=1"
510	print *, "Please desactivate zonal mean for 1D !"
511	stop
512	endif
513
514	allocate(dycchi(ngrid,nlayer,nkim)) ! only for chemical tracers
515	allocate(qysat(nlayer,nkim))
516
517	! Chemistry timestep
518	ctimestep = ptimestep*REAL(ichim)
519
520	! qysat is taken at the equator ( small variations of t,p )
521	if (ngrid.ne.1) then ! TODO : a patcher (lecture d'un profil?) si jamais on a plus acces a moyzon_mod !
522	temp_eq(:) = tmoy(:)
523	press_eq(:) = playmoy(:)/100. ! in mbar
524	else
525	temp_eq(:) = pt(1,:)
526	press_eq(:) = pplay(1,:)/100.
527	endif
528
529	call inicondens(press_eq,temp_eq,qysat)
530
531	zdqchi(:,:,:) = 0.0
532	zdqcond(:,:,:) = 0.0
533
534	endif
535
536	! Initialize microphysics.
537	! ~~~~~~~~~~~~~~~~~~~~~~~~
538
539	IF ( callmufi ) THEN
540
541	call inimufi(nq,ptimestep)
542
543	! Optical coupling of YAMMS is plugged but inactivated for now
544	! as long as the microphysics only isn't fully debugged -- JVO 01/18
545	IF (.NOT.uncoupl_optic_haze) call mmp_initialize_optics("/path/to/mmp_optic_table.nc")
546
547	ENDIF
548
549
550	#ifdef CPP_XIOS
551	! Initialize XIOS context
552	write(,) "physiq: call wxios_context_init"
553	CALL wxios_context_init
554	#endif
555
556	! Read 'startfi.nc' file.
557	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
558	call phyetat0(startphy_file,ngrid,nlayer,"startfi.nc",0,0,nsoilmx,nq, &
559	day_ini,time_phys,tsurf,tsoil,emis,q2,qsurf,tankCH4)
560	if (.not.startphy_file) then
561	! additionnal "academic" initialization of physics
562	if (is_master) write(,) "Physiq: initializing tsurf(:) to pt(:,1) !!"
563	tsurf(:)=pt(:,1)
564	if (is_master) write(,) "Physiq: initializing tsoil(:) to pt(:,1) !!"
565	do isoil=1,nsoilmx
566	tsoil(:,isoil)=tsurf(:)
567	enddo
568	if (is_master) write(,) "Physiq: initializing day_ini to pdat !"
569	day_ini=pday
570	endif
571
572	if (pday.ne.day_ini) then
573	write(,) "ERROR in physiq.F90:"
574	write(,) "bad synchronization between physics and dynamics"
575	write(,) "dynamics day: ",pday
576	write(,) "physics day: ",day_ini
577	stop
578	endif
579	write (,) 'In physiq day_ini =', day_ini
580
581	! Initialize albedo calculation.
582	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
583	albedo(:,:)=0.0
584	albedo_bareground(:)=0.0
585	call surfini(ngrid,nq,qsurf,albedo,albedo_bareground)
586
587	! Initialize orbital calculation.
588	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
589	call iniorbit(apoastr,periastr,year_day,peri_day,obliquit)
590
591	if(tlocked)then
592	print*,'Planet is tidally locked at resonance n=',nres
593	print*,'Make sure you have the right rotation rate!!!'
594	endif
595
596
597	! Initialize soil.
598	! ~~~~~~~~~~~~~~~~
599	if (callsoil) then
600
601	call soil(ngrid,nsoilmx,firstcall,lastcall,inertiedat, &
602	ptimestep,tsurf,tsoil,capcal,fluxgrd)
603
604	else ! else of 'callsoil'.
605
606	print*,'WARNING! Thermal conduction in the soil turned off'
607	capcal(:)=1.e6
608	fluxgrd(:)=intheat
609	print*,'Flux from ground = ',intheat,' W m^-2'
610
611	endif ! end of 'callsoil'.
612
613	icount=1
614
615
616	! Initialize surface history variable.
617	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
618	qsurf_hist(:,:)=qsurf(:,:)
619
620	! Initialize variable for dynamical heating and zonal wind tendency diagnostic
621	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
622	ztprevious(:,:)=pt(:,:)
623	zuprevious(:,:)=pu(:,:)
624
625
626	if(meanOLR)then
627	call system('rm -f rad_bal.out') ! to record global radiative balance.
628	call system('rm -f tem_bal.out') ! to record global mean/max/min temperatures.
629	call system('rm -f h2o_bal.out') ! to record global hydrological balance.
630	endif
631
632	if (ngrid.ne.1) then
633	! Note : no need to create a restart file in 1d.
634	call physdem0("restartfi.nc",longitude,latitude,nsoilmx,ngrid,nlayer,nq, &
635	ptimestep,pday+nday,time_phys,cell_area, &
636	albedo_bareground,inertiedat,zmea,zstd,zsig,zgam,zthe)
637	endif
638
639	! XIOS outputs
640	#ifdef CPP_XIOS
641
642	write(,) "physiq: call initialize_xios_output"
643	call initialize_xios_output(pday,ptime,ptimestep,daysec, &
644	presnivs,pseudoalt)
645	#endif
646	write(,) "physiq: end of firstcall"
647	endif ! end of 'firstcall'
648
649	! ------------------------------------------------------
650	! I.2 Initializations done at every physical timestep:
651	! ------------------------------------------------------
652
653	#ifdef CPP_XIOS
654	! update XIOS time/calendar
655	call update_xios_timestep
656	#endif
657
658	! Initialize various variables
659	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
660
661	pdt(:,:) = 0.0
662	zdtsurf(:) = 0.0
663	pdq(:,:,:) = 0.0
664	dqsurf(:,:) = 0.0
665	pdu(:,:) = 0.0
666	pdv(:,:) = 0.0
667	pdpsrf(:) = 0.0
668	zflubid(:) = 0.0
669	taux(:) = 0.0
670	tauy(:) = 0.0
671
672	zday=pday+ptime ! Compute time, in sols (and fraction thereof).
673
674	! Compute Stellar Longitude (Ls), and orbital parameters.
675	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
676	if (season) then
677	call stellarlong(zday,zls)
678	else
679	call stellarlong(float(day_ini),zls)
680	end if
681
682	call orbite(zls,dist_star,declin,right_ascen)
683
684	if (tlocked) then
685	zlss=Mod(-(2.pi(zday/year_day)nres - right_ascen),2.pi)
686	elseif (diurnal) then
687	zlss=-2.pi(zday-.5)
688	else if(diurnal .eqv. .false.) then
689	zlss=9999.
690	endif
691
692
693	! Compute variations of g with latitude (oblate case).
694	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
695	if (oblate .eqv. .false.) then
696	glat(:) = g
697	else if (flatten .eq. 0.0 .or. J2 .eq. 0.0 .or. Rmean .eq. 0.0 .or. MassPlanet .eq. 0.0) then
698	print*,'I need values for flatten, J2, Rmean and MassPlanet to compute glat (else set oblate=.false.)'
699	call abort
700	else
701	gmplanet = MassPlanetgrav1e24
702	do ig=1,ngrid
703	glat(ig)= gmplanet/(Rmean*2) (1.D0 + 0.75 J2 - 2.0flatten/3. + (2.flatten - 15./4. J2) * cos(2. * (pi/2. - latitude(ig))))
704	end do
705	endif
706
707	! Compute geopotential between layers.
708	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
709	zzlay(:,:)=pphi(:,:)
710	do l=1,nlayer
711	zzlay(:,l)= zzlay(:,l)/glat(:)
712	enddo
713
714	zzlev(:,1)=0.
715	zzlev(:,nlayer+1)=1.e7 ! Dummy top of last layer above 10000 km...
716
717	do l=2,nlayer
718	do ig=1,ngrid
719	z1=(pplay(ig,l-1)+pplev(ig,l))/(pplay(ig,l-1)-pplev(ig,l))
720	z2=(pplev(ig,l)+pplay(ig,l))/(pplev(ig,l)-pplay(ig,l))
721	zzlev(ig,l)=(z1zzlay(ig,l-1)+z2zzlay(ig,l))/(z1+z2)
722	enddo
723	enddo
724
725	! Zonal averages needed for chemistry
726	! ~~~~~~~ Taken from old Titan ~~~~~~
727	if (moyzon_ch) then
728
729	zzlaybar(1,:)=(zphibar(1,:)+zphisbar(1))/g
730	! SI ON TIENT COMPTE DE LA VARIATION DE G AVEC L'ALTITUDE:
731	! zzlaybar(1,:)=RGRARA/(RG*RA-(zphibar(1,:)+zphisbar(1)))-RA
732	zzlevbar(1,1)=zphisbar(1)/g
733	DO l=2,nlayer
734	z1=(zplaybar(1,l-1)+zplevbar(1,l))/(zplevbar(1,l-1)-zplevbar(1,l))
735	z2=(zplevbar(1,l) +zplaybar(1,l))/(zplevbar(1,l) -zplaybar(1,l))
736	zzlevbar(1,l)=(z1zzlaybar(1,l-1)+z2zzlaybar(1,l))/(z1+z2)
737	ENDDO
738	zzlevbar(1,nlayer+1)=zzlaybar(1,nlayer)+(zzlaybar(1,nlayer)-zzlevbar(1,nlayer))
739
740	DO ig=2,ngrid
741	if (latitude(ig).ne.latitude(ig-1)) then
742	DO l=1,nlayer
743	zzlaybar(ig,l)=(zphibar(ig,l)+zphisbar(ig))/g
744	! SI ON TIENT COMPTE DE LA VARIATION DE G AVEC L'ALTITUDE:
745	!zzlaybar(ig,l)=RGRARA/(RG*RA-(zphibar(ig,l)+zphisbar(ig)))-RA
746	ENDDO
747	zzlevbar(ig,1)=zphisbar(ig)/g
748	DO l=2,nlayer
749	z1=(zplaybar(ig,l-1)+zplevbar(ig,l))/ (zplevbar(ig,l-1)-zplevbar(ig,l))
750	z2=(zplevbar(ig,l) +zplaybar(ig,l))/(zplevbar(ig,l) -zplaybar(ig,l))
751	zzlevbar(ig,l)=(z1zzlaybar(ig,l-1)+z2zzlaybar(ig,l))/(z1+z2)
752	ENDDO
753	zzlevbar(ig,nlayer+1)=zzlaybar(ig,nlayer)+(zzlaybar(ig,nlayer)-zzlevbar(ig,nlayer))
754	else
755	zzlaybar(ig,:)=zzlaybar(ig-1,:)
756	zzlevbar(ig,:)=zzlevbar(ig-1,:)
757	endif
758	ENDDO
759
760	endif ! moyzon
761
762	! -------------------------------------------------------------------------------------
763	! Compute potential temperature
764	! Note : Potential temperature calculation may not be the same in physiq and dynamic...
765	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
766	do l=1,nlayer
767	do ig=1,ngrid
768	zpopsk(ig,l)=(pplay(ig,l)/pplev(ig,1))**rcp
769	zh(ig,l)=pt(ig,l)/zpopsk(ig,l)
770	mass(ig,l) = (pplev(ig,l) - pplev(ig,l+1))/glat(ig)
771	massarea(ig,l)=mass(ig,l)*cell_area(ig)
772	enddo
773	enddo
774
775	! Compute vertical velocity (m/s) from vertical mass flux
776	! w = F / (rhoarea) and rho = P/(rT)
777	! But first linearly interpolate mass flux to mid-layers
778	do l=1,nlayer-1
779	pw(:,l)=0.5*(flxw(:,l)+flxw(:,l+1))
780	enddo
781	pw(:,nlayer)=0.5*flxw(:,nlayer) ! since flxw(nlayer+1)=0
782	do l=1,nlayer
783	pw(:,l)=(pw(:,l)rpt(:,l)) / (pplay(:,l)*cell_area(:))
784	enddo
785
786	!---------------------------------
787	! II. Compute radiative tendencies
788	!---------------------------------
789
790	if (callrad) then
791	if( mod(icount-1,iradia).eq.0.or.lastcall) then
792
793	! Compute local stellar zenith angles
794	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
795	if (tlocked) then
796	! JL14 corrects tidally resonant (and inclined) cases. nres=omega_rot/omega_orb
797	ztim1=SIN(declin)
798	ztim2=COS(declin)*COS(zlss)
799	ztim3=COS(declin)*SIN(zlss)
800
801	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
802	ztim1,ztim2,ztim3,mu0,fract, flatten)
803
804	elseif (diurnal) then
805	ztim1=SIN(declin)
806	ztim2=COS(declin)COS(2.pi*(zday-.5))
807	ztim3=-COS(declin)SIN(2.pi*(zday-.5))
808
809	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
810	ztim1,ztim2,ztim3,mu0,fract, flatten)
811	else if(diurnal .eqv. .false.) then
812
813	call mucorr(ngrid,declin,latitude,mu0,fract,10000.,rad,flatten)
814	! WARNING: this function appears not to work in 1D
815
816	endif
817
818	! Eclipse incoming sunlight (e.g. Saturn ring shadowing).
819	if(rings_shadow) then
820	call call_rings(ngrid, ptime, pday, diurnal)
821	endif
822
823
824	if (corrk) then
825
826	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
827	! II.a Call correlated-k radiative transfer scheme
828	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
829
830	call call_profilgases(nlayer)
831
832	! Convert (microphysical) tracers for optics: X.kg-1 --> X.m-2_
833	! NOTE: it should be moved somewhere else: calmufi performs the same kind of
834	! computations... waste of time...
835	DO i = 1, ngrid
836	i2e(1:nlayer) = ( pplev(i,1:nlayer)-pplev(i,2:nlayer+1) ) / g
837	pqo(i,:,:) = 0.0
838	DO j=1,nmicro-nice
839	pqo(i,:,j) = pq(i,:,j)*i2e(:)
840	ENDDO
841	ENDDO
842
843
844	! standard callcorrk
845	call callcorrk(ngrid,nlayer,pqo,nq,qsurf, &
846	albedo,albedo_equivalent,emis,mu0,pplev,pplay,pt, &
847	tsurf,fract,dist_star, &
848	zdtlw,zdtsw,fluxsurf_lw,fluxsurf_sw, &
849	fluxsurfabs_sw,fluxtop_lw, &
850	fluxabs_sw,fluxtop_dn,OLR_nu,OSR_nu, &
851	lastcall)
852
853	! Radiative flux from the sky absorbed by the surface (W.m-2).
854	GSR=0.0
855	fluxrad_sky(:)=emis(:)*fluxsurf_lw(:)+fluxsurfabs_sw(:)
856
857	!if(noradsurf)then ! no lower surface; SW flux just disappears
858	! GSR = SUM(fluxsurf_sw(:)*cell_area(:))/totarea
859	! fluxrad_sky(:)=emis(:)*fluxsurf_lw(:)
860	! print*,'SW lost in deep atmosphere = ',GSR,' W m^-2'
861	!endif
862
863	! Net atmospheric radiative heating rate (K.s-1)
864	dtrad(:,:)=zdtsw(:,:)+zdtlw(:,:)
865
866	elseif(newtonian)then
867
868	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
869	! II.b Call Newtonian cooling scheme
870	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
871	call newtrelax(ngrid,nlayer,mu0,sinlat,zpopsk,pt,pplay,pplev,dtrad,firstcall)
872
873	zdtsurf(:) = +(pt(:,1)-tsurf(:))/ptimestep
874	! e.g. surface becomes proxy for 1st atmospheric layer ?
875
876	else
877
878	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
879	! II.c Atmosphere has no radiative effect
880	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
881	fluxtop_dn(:) = fract(:)mu0(:)Fat1AU/dist_star**2
882	if(ngrid.eq.1)then ! / by 4 globally in 1D case...
883	fluxtop_dn(1) = fract(1)Fat1AU/dist_star*2/2.0
884	endif
885	fluxsurf_sw(:) = fluxtop_dn(:)
886	print*,'------------WARNING---WARNING------------' ! by MT2015.
887	print*,'You are in corrk=false mode, '
888	print*,'and the surface albedo is taken equal to the first visible spectral value'
889
890	fluxsurfabs_sw(:) = fluxtop_dn(:)*(1.-albedo(:,1))
891	fluxrad_sky(:) = fluxsurfabs_sw(:)
892	fluxtop_lw(:) = emis(:)sigmatsurf(:)**4
893
894	dtrad(:,:)=0.0 ! no atmospheric radiative heating
895
896	endif ! end of corrk
897
898	endif ! of if(mod(icount-1,iradia).eq.0)
899
900
901	! Transformation of the radiative tendencies
902	! ------------------------------------------
903	zplanck(:)=tsurf(:)*tsurf(:)
904	zplanck(:)=emis(:)sigmazplanck(:)*zplanck(:)
905	fluxrad(:)=fluxrad_sky(:)-zplanck(:)
906	pdt(:,:)=pdt(:,:)+dtrad(:,:)
907
908	! Test of energy conservation
909	!----------------------------
910	if(enertest)then
911	call planetwide_sumval(cppmassarea(:,:)zdtsw(:,:)/totarea_planet,dEtotSW)
912	call planetwide_sumval(cppmassarea(:,:)zdtlw(:,:)/totarea_planet,dEtotLW)
913	!call planetwide_sumval(fluxsurf_sw(:)(1.-albedo_equivalent(:))cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
914	call planetwide_sumval(fluxsurfabs_sw(:)*cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
915	call planetwide_sumval((fluxsurf_lw(:)emis(:)-zplanck(:))cell_area(:)/totarea_planet,dEtotsLW)
916	dEzRadsw(:,:)=cppmass(:,:)zdtsw(:,:)
917	dEzRadlw(:,:)=cppmass(:,:)zdtlw(:,:)
918	if (is_master) then
919	print*,'---------------------------------------------------------------'
920	print*,'In corrk SW atmospheric heating =',dEtotSW,' W m-2'
921	print*,'In corrk LW atmospheric heating =',dEtotLW,' W m-2'
922	print*,'atmospheric net rad heating (SW+LW) =',dEtotLW+dEtotSW,' W m-2'
923	print*,'In corrk SW surface heating =',dEtotsSW,' W m-2'
924	print*,'In corrk LW surface heating =',dEtotsLW,' W m-2'
925	print*,'surface net rad heating (SW+LW) =',dEtotsLW+dEtotsSW,' W m-2'
926	endif
927	endif ! end of 'enertest'
928
929	endif ! of if (callrad)
930
931
932
933	! --------------------------------------------
934	! III. Vertical diffusion (turbulent mixing) :
935	! --------------------------------------------
936
937	if (calldifv) then
938
939	zflubid(:)=fluxrad(:)+fluxgrd(:)
940
941	! JL12 the following if test is temporarily there to allow us to compare the old vdifc with turbdiff.
942	if (UseTurbDiff) then
943
944	call turbdiff(ngrid,nlayer,nq, &
945	ptimestep,capcal,lwrite, &
946	pplay,pplev,zzlay,zzlev,z0, &
947	pu,pv,pt,zpopsk,pq,tsurf,emis,qsurf, &
948	pdt,pdq,zflubid, &
949	zdudif,zdvdif,zdtdif,zdtsdif, &
950	sensibFlux,q2,zdqdif,zdqsdif, &
951	taux,tauy,lastcall)
952
953	else
954
955	zdh(:,:)=pdt(:,:)/zpopsk(:,:)
956
957	call vdifc(ngrid,nlayer,nq,zpopsk, &
958	ptimestep,capcal,lwrite, &
959	pplay,pplev,zzlay,zzlev,z0, &
960	pu,pv,zh,pq,tsurf,emis,qsurf, &
961	zdh,pdq,zflubid, &
962	zdudif,zdvdif,zdhdif,zdtsdif, &
963	sensibFlux,q2,zdqdif,zdqsdif, &
964	taux,tauy,lastcall)
965
966	zdtdif(:,:)=zdhdif(:,:)*zpopsk(:,:) ! for diagnostic only
967	zdqevap(:,:)=0.
968
969	end if !end of 'UseTurbDiff'
970
971
972	pdv(:,:)=pdv(:,:)+zdvdif(:,:)
973	pdu(:,:)=pdu(:,:)+zdudif(:,:)
974	pdt(:,:)=pdt(:,:)+zdtdif(:,:)
975	zdtsurf(:)=zdtsurf(:)+zdtsdif(:)
976
977	if (tracer) then
978	pdq(:,:,:)=pdq(:,:,:)+ zdqdif(:,:,:)
979	dqsurf(:,:)=dqsurf(:,:) + zdqsdif(:,:)
980	end if ! of if (tracer)
981
982
983	! test energy conservation
984	!-------------------------
985	if(enertest)then
986
987	dEzdiff(:,:)=cppmass(:,:)zdtdif(:,:)
988	do ig = 1, ngrid
989	dEdiff(ig)=SUM(dEzdiff (ig,:))+ sensibFlux(ig)! subtract flux to the ground
990	dEzdiff(ig,1)= dEzdiff(ig,1)+ sensibFlux(ig)! subtract flux to the ground
991	enddo
992
993	call planetwide_sumval(dEdiff(:)*cell_area(:)/totarea_planet,dEtot)
994	dEdiffs(:)=capcal(:)*zdtsdif(:)-zflubid(:)-sensibFlux(:)
995	call planetwide_sumval(dEdiffs(:)*cell_area(:)/totarea_planet,dEtots)
996	call planetwide_sumval(sensibFlux(:)*cell_area(:)/totarea_planet,AtmToSurf_TurbFlux)
997
998	if (is_master) then
999
1000	if (UseTurbDiff) then
1001	print*,'In TurbDiff sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
1002	print*,'In TurbDiff non-cons atm nrj change =',dEtot,' W m-2'
1003	print*,'In TurbDiff (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1004	else
1005	print*,'In vdifc sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
1006	print*,'In vdifc non-cons atm nrj change =',dEtot,' W m-2'
1007	print*,'In vdifc (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1008	end if
1009	endif ! end of 'is_master'
1010
1011	! JL12 : note that the black body radiative flux emitted by the surface has been updated by the implicit scheme but not given back elsewhere.
1012	endif ! end of 'enertest'
1013
1014	else ! calldifv
1015
1016	if(.not.newtonian)then
1017
1018	zdtsurf(:) = zdtsurf(:) + (fluxrad(:) + fluxgrd(:))/capcal(:)
1019
1020	endif
1021
1022	endif ! end of 'calldifv'
1023
1024
1025	!----------------------------------
1026	! IV. Dry convective adjustment :
1027	!----------------------------------
1028
1029	if(calladj) then
1030
1031	zdh(:,:) = pdt(:,:)/zpopsk(:,:)
1032	zduadj(:,:)=0.0
1033	zdvadj(:,:)=0.0
1034	zdhadj(:,:)=0.0
1035
1036
1037	call convadj(ngrid,nlayer,nq,ptimestep, &
1038	pplay,pplev,zpopsk, &
1039	pu,pv,zh,pq, &
1040	pdu,pdv,zdh,pdq, &
1041	zduadj,zdvadj,zdhadj, &
1042	zdqadj)
1043
1044	pdu(:,:) = pdu(:,:) + zduadj(:,:)
1045	pdv(:,:) = pdv(:,:) + zdvadj(:,:)
1046	pdt(:,:) = pdt(:,:) + zdhadj(:,:)*zpopsk(:,:)
1047	zdtadj(:,:) = zdhadj(:,:)*zpopsk(:,:) ! for diagnostic only
1048
1049	if(tracer) then
1050	pdq(:,:,:) = pdq(:,:,:) + zdqadj(:,:,:)
1051	end if
1052
1053	! Test energy conservation
1054	if(enertest)then
1055	call planetwide_sumval(cppmassarea(:,:)zdtadj(:,:)/totarea_planet,dEtot)
1056	if (is_master) print*,'In convadj atmospheric energy change =',dEtot,' W m-2'
1057	endif
1058
1059
1060	endif ! end of 'calladj'
1061
1062
1063	!---------------------------------------------
1064	! V. Specific parameterizations for tracers
1065	!---------------------------------------------
1066
1067	if (tracer) then
1068
1069	! -------------------------
1070	! V.1. Chemistry
1071	! -------------------------
1072
1073	if (callchim) then
1074
1075	! o. Convert updated tracers to molar fraction
1076	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1077	do iq = 1,nkim
1078	ychim(:,:,iq) = ( pq(:,:,iq+nmicro) + pdq(:,:,iq+nmicro) ) / rat_mmol(iq+nmicro)
1079	enddo
1080
1081	! i. Condensation after the transport
1082	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1083	do iq=1,nkim
1084	do l=1,nlayer
1085	do ig=1,ngrid
1086	if ( ychim(ig,l,iq).gt.qysat(l,iq) ) then
1087	dyccond(ig,l,iq+nmicro) = ( -ychim(ig,l,iq)+qysat(l,iq) ) / ptimestep
1088	else
1089	dyccond(ig,l,iq+nmicro) = 0.0 ! since array not saved
1090	endif
1091	enddo
1092	enddo
1093	enddo
1094
1095	if ( callclouds ) dyccond(:,:,ices_indx) = 0.0 ! Condensation will be calculated in the cloud microphysics
1096
1097	do iq=1,nkim
1098	ychim(:,:,iq) = ychim(:,:,iq) + dyccond(:,:,iq+nmicro) ! update molar ychim for following calchim
1099	zdqcond(:,:,iq+nmicro) = dyccond(:,:,iq+nmicro)*rat_mmol(iq+nmicro) ! convert tendencies to mass mixing ratio
1100	enddo
1101
1102	pdq(:,:,:) = pdq(:,:,:) + zdqcond(:,:,:)
1103
1104	! ii. Photochemistry
1105	! ~~~~~~~~~~~~~~~~~~
1106	if( mod(icount-1,ichim).eq.0. ) then
1107
1108	print *, "We enter in the chemistry ..."
1109
1110	if (moyzon_ch) then ! 2D zonally averaged chemistry
1111
1112	do iq = 1,nkim ! In this case we send zonal average from dynamics to chem. module
1113	ychim(:,:,iq) = zqfibar(:,:,iq+nmicro) / rat_mmol(iq+nmicro)
1114	enddo
1115
1116	call calchim(ngrid,ychim,declin,ctimestep,ztfibar,zphibar, &
1117	zplaybar,zplevbar,zzlaybar,zzlevbar,dycchi)
1118
1119	else ! 3D chemistry (or 1D run)
1120	call calchim(ngrid,ychim,declin,ctimestep,pt,pphi, &
1121	pplay,pplev,zzlay,zzlev,dycchi)
1122	endif ! if moyzon
1123	endif
1124
1125	do iq=1,nkim
1126	zdqchi(:,:,iq+nmicro) = dycchi(:,:,iq)*rat_mmol(iq+nmicro) ! convert tendencies to mass mixing ratio
1127
1128	where( (pq(:,:,iq+nmicro)+zdqchi(:,:,iq+nmicro) ).LT.1e-40) & ! When using zonal means we set the same tendency
1129	zdqchi(:,:,iq+nmicro) = 1e-40 - ( pq(:,:,iq+nmicro) ) ! everywhere in longitude -> can lead to negs !
1130	enddo
1131
1132	pdq(:,:,:) = pdq(:,:,:) + zdqchi(:,:,:)
1133
1134	endif ! end of 'callchim'
1135
1136	! -------------------
1137	! V.2 Microphysics
1138	! -------------------
1139
1140	if (callmufi) then
1141	#ifdef USE_QTEST
1142	dtpq(:,:,:) = 0.0 ! we want tpq to go only through mufi
1143	call calmufi(ptimestep,pplev,zzlev,pplay,zzlay,pt,tpq,dtpq,zdqmufi)
1144	tpq(:,:,:) = tpq(:,:,:) + zdqmufi(:,:,:)ptimestep ! only manipulation of tpq->ptimestep here
1145	#else
1146	call calmufi(ptimestep,pplev,zzlev,pplay,zzlay,pt,pq,pdq,zdqmufi)
1147	pdq(:,:,:) = pdq(:,:,:) + zdqmufi(:,:,:)
1148	#endif
1149	endif
1150
1151	! ---------------
1152	! V.3 Updates
1153	! ---------------
1154
1155	! Updating Atmospheric Mass and Tracers budgets.
1156	if(mass_redistrib) then
1157
1158	zdmassmr(:,:) = mass(:,:) * zdqevap(:,:)
1159
1160	do ig = 1, ngrid
1161	zdmassmr_col(ig)=SUM(zdmassmr(ig,:))
1162	enddo
1163
1164	call writediagfi(ngrid,"mass_evap","mass gain"," ",3,zdmassmr)
1165	call writediagfi(ngrid,"mass_evap_col","mass gain col"," ",2,zdmassmr_col)
1166	call writediagfi(ngrid,"mass","mass","kg/m2",3,mass)
1167
1168	call mass_redistribution(ngrid,nlayer,nq,ptimestep, &
1169	capcal,pplay,pplev,pt,tsurf,pq,qsurf, &
1170	pu,pv,pdt,zdtsurf,pdq,pdu,pdv,zdmassmr, &
1171	zdtmr,zdtsurfmr,zdpsrfmr,zdumr,zdvmr,zdqmr,zdqsurfmr)
1172
1173	pdq(:,:,:) = pdq(:,:,:) + zdqmr(:,:,:)
1174	dqsurf(:,:) = dqsurf(:,:) + zdqsurfmr(:,:)
1175	pdt(:,:) = pdt(:,:) + zdtmr(:,:)
1176	pdu(:,:) = pdu(:,:) + zdumr(:,:)
1177	pdv(:,:) = pdv(:,:) + zdvmr(:,:)
1178	pdpsrf(:) = pdpsrf(:) + zdpsrfmr(:)
1179	zdtsurf(:) = zdtsurf(:) + zdtsurfmr(:)
1180
1181	endif
1182
1183	! -----------------------------
1184	! V.4. Surface Tracer Update
1185	! -----------------------------
1186
1187	qsurf(:,:) = qsurf(:,:) + ptimestep*dqsurf(:,:)
1188
1189	! Add qsurf to qsurf_hist, which is what we save in diagfi.nc. At the same time, we set the water
1190	! content of ocean gridpoints back to zero, in order to avoid rounding errors in vdifc, rain.
1191	qsurf_hist(:,:) = qsurf(:,:)
1192
1193	endif! end of if 'tracer'
1194
1195
1196	!------------------------------------------------
1197	! VI. Surface and sub-surface soil temperature
1198	!------------------------------------------------
1199
1200
1201	! Increment surface temperature
1202
1203	tsurf(:)=tsurf(:)+ptimestep*zdtsurf(:)
1204
1205	! Compute soil temperatures and subsurface heat flux.
1206	if (callsoil) then
1207	call soil(ngrid,nsoilmx,.false.,lastcall,inertiedat, &
1208	ptimestep,tsurf,tsoil,capcal,fluxgrd)
1209	endif
1210
1211
1212	! Test energy conservation
1213	if(enertest)then
1214	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf(:)/totarea_planet,dEtots)
1215	if (is_master) print*,'Surface energy change =',dEtots,' W m-2'
1216	endif
1217
1218
1219	!---------------------------------------------------
1220	! VII. Perform diagnostics and write output files
1221	!---------------------------------------------------
1222
1223	! Note : For output only: the actual model integration is performed in the dynamics.
1224
1225
1226
1227	! Temperature, zonal and meridional winds.
1228	zt(:,:) = pt(:,:) + pdt(:,:)*ptimestep
1229	zu(:,:) = pu(:,:) + pdu(:,:)*ptimestep
1230	zv(:,:) = pv(:,:) + pdv(:,:)*ptimestep
1231
1232	! Diagnostic.
1233	zdtdyn(:,:) = (pt(:,:)-ztprevious(:,:)) / ptimestep
1234	ztprevious(:,:) = zt(:,:)
1235
1236	zdudyn(:,:) = (pu(:,:)-zuprevious(:,:)) / ptimestep
1237	zuprevious(:,:) = zu(:,:)
1238
1239	if(firstcall)then
1240	zdtdyn(:,:)=0.0
1241	zdudyn(:,:)=0.0
1242	endif
1243
1244	! Dynamical heating diagnostic.
1245	do ig=1,ngrid
1246	fluxdyn(ig)= SUM(zdtdyn(ig,:) mass(ig,:))cpp
1247	enddo
1248
1249	! Tracers.
1250	zq(:,:,:) = pq(:,:,:) + pdq(:,:,:)*ptimestep
1251
1252	! Surface pressure.
1253	ps(:) = pplev(:,1) + pdpsrf(:)*ptimestep
1254
1255
1256
1257	! Surface and soil temperature information
1258	call planetwide_sumval(cell_area(:)*tsurf(:)/totarea_planet,Ts1)
1259	call planetwide_minval(tsurf(:),Ts2)
1260	call planetwide_maxval(tsurf(:),Ts3)
1261	if(callsoil)then
1262	TsS = SUM(cell_area(:)*tsoil(:,nsoilmx))/totarea ! mean temperature at bottom soil layer
1263	if (is_master) then
1264	print*,' ave[Tsurf] min[Tsurf] max[Tsurf] ave[Tdeep]'
1265	print*,Ts1,Ts2,Ts3,TsS
1266	end if
1267	else
1268	if (is_master) then
1269	print*,' ave[Tsurf] min[Tsurf] max[Tsurf]'
1270	print*,Ts1,Ts2,Ts3
1271	endif
1272	end if
1273
1274
1275	! Check the energy balance of the simulation during the run
1276	if(corrk)then
1277
1278	call planetwide_sumval(cell_area(:)*fluxtop_dn(:)/totarea_planet,ISR)
1279	call planetwide_sumval(cell_area(:)*fluxabs_sw(:)/totarea_planet,ASR)
1280	call planetwide_sumval(cell_area(:)*fluxtop_lw(:)/totarea_planet,OLR)
1281	call planetwide_sumval(cell_area(:)*fluxgrd(:)/totarea_planet,GND)
1282	call planetwide_sumval(cell_area(:)*fluxdyn(:)/totarea_planet,DYN)
1283	do ig=1,ngrid
1284	if(fluxtop_dn(ig).lt.0.0)then
1285	print*,'fluxtop_dn has gone crazy'
1286	print*,'fluxtop_dn=',fluxtop_dn(ig)
1287	print*,'temp= ',pt(ig,:)
1288	print*,'pplay= ',pplay(ig,:)
1289	call abort
1290	endif
1291	end do
1292
1293	if(ngrid.eq.1)then
1294	DYN=0.0
1295	endif
1296
1297	if (is_master) then
1298	print*,' ISR ASR OLR GND DYN [W m^-2]'
1299	print*, ISR,ASR,OLR,GND,DYN
1300	endif
1301
1302	if(enertest .and. is_master)then
1303	print*,'SW flux/heating difference SW++ - ASR = ',dEtotSW+dEtotsSW-ASR,' W m-2'
1304	print*,'LW flux/heating difference LW++ - OLR = ',dEtotLW+dEtotsLW+OLR,' W m-2'
1305	print*,'LW energy balance LW++ + ASR = ',dEtotLW+dEtotsLW+ASR,' W m-2'
1306	endif
1307
1308	if(meanOLR .and. is_master)then
1309	if((ngrid.gt.1) .or. (mod(icount-1,ecritphy).eq.0))then
1310	! to record global radiative balance
1311	open(92,file="rad_bal.out",form='formatted',position='append')
1312	write(92,*) zday,ISR,ASR,OLR
1313	close(92)
1314	open(93,file="tem_bal.out",form='formatted',position='append')
1315	if(callsoil)then
1316	write(93,*) zday,Ts1,Ts2,Ts3,TsS
1317	else
1318	write(93,*) zday,Ts1,Ts2,Ts3
1319	endif
1320	close(93)
1321	endif
1322	endif
1323
1324	endif ! end of 'corrk'
1325
1326
1327	! Diagnostic to test radiative-convective timescales in code.
1328	if(testradtimes)then
1329	open(38,file="tau_phys.out",form='formatted',position='append')
1330	ig=1
1331	do l=1,nlayer
1332	write(38,*) -1./pdt(ig,l),pt(ig,l),pplay(ig,l)
1333	enddo
1334	close(38)
1335	print*,'As testradtimes enabled,'
1336	print*,'exiting physics on first call'
1337	call abort
1338	endif
1339
1340
1341	if (is_master) print,'--> Ls =',zls180./pi
1342
1343
1344	!----------------------------------------------------------------------
1345	! Writing NetCDF file "RESTARTFI" at the end of the run
1346	!----------------------------------------------------------------------
1347
1348	! Note: 'restartfi' is stored just before dynamics are stored
1349	! in 'restart'. Between now and the writting of 'restart',
1350	! there will have been the itau=itau+1 instruction and
1351	! a reset of 'time' (lastacll = .true. when itau+1= itaufin)
1352	! thus we store for time=time+dtvr
1353
1354
1355
1356	if(lastcall) then
1357	ztime_fin = ptime + ptimestep/(float(iphysiq)*daysec)
1358
1359	if (ngrid.ne.1) then
1360	write(,)'PHYSIQ: for physdem ztime_fin =',ztime_fin
1361
1362	call physdem1("restartfi.nc",nsoilmx,ngrid,nlayer,nq, &
1363	ptimestep,ztime_fin, &
1364	tsurf,tsoil,emis,q2,qsurf_hist,tankCH4)
1365	endif
1366	endif ! end of 'lastcall'
1367
1368
1369	!-----------------------------------------------------------------------------------------------------
1370	! OUTPUT in netcdf file "DIAGFI.NC", containing any variable for diagnostic
1371	!
1372	! Note 1 : output with period "ecritphy", set in "run.def"
1373	!
1374	! Note 2 : writediagfi can also be called from any other subroutine for any variable,
1375	! but its preferable to keep all the calls in one place ...
1376	!-----------------------------------------------------------------------------------------------------
1377
1378
1379	call writediagfi(ngrid,"Ls","solar longitude","deg",0,zls*180./pi)
1380	call writediagfi(ngrid,"Lss","sub solar longitude","deg",0,zlss*180./pi)
1381	call writediagfi(ngrid,"RA","right ascension","deg",0,right_ascen*180./pi)
1382	call writediagfi(ngrid,"Declin","solar declination","deg",0,declin*180./pi)
1383	call writediagfi(ngrid,"tsurf","Surface temperature","K",2,tsurf)
1384	call writediagfi(ngrid,"ps","Surface pressure","Pa",2,ps)
1385	call writediagfi(ngrid,"temp","temperature","K",3,zt)
1386	call writediagfi(ngrid,"teta","potential temperature","K",3,zh)
1387	call writediagfi(ngrid,"u","Zonal wind","m.s-1",3,zu)
1388	call writediagfi(ngrid,"v","Meridional wind","m.s-1",3,zv)
1389	call writediagfi(ngrid,"w","Vertical wind","m.s-1",3,pw)
1390	call writediagfi(ngrid,"p","Pressure","Pa",3,pplay)
1391
1392	! Subsurface temperatures
1393	! call writediagsoil(ngrid,"tsurf","Surface temperature","K",2,tsurf)
1394	! call writediagsoil(ngrid,"temp","temperature","K",3,tsoil)
1395
1396
1397
1398	! Total energy balance diagnostics
1399	if(callrad.and.(.not.newtonian))then
1400
1401	!call writediagfi(ngrid,"ALB","Surface albedo"," ",2,albedo_equivalent)
1402	call writediagfi(ngrid,"ISR","incoming stellar rad.","W m-2",2,fluxtop_dn)
1403	call writediagfi(ngrid,"ASR","absorbed stellar rad.","W m-2",2,fluxabs_sw)
1404	call writediagfi(ngrid,"OLR","outgoing longwave rad.","W m-2",2,fluxtop_lw)
1405
1406	! call writediagfi(ngrid,"ASRcs","absorbed stellar rad (cs).","W m-2",2,fluxabs_sw1)
1407	! call writediagfi(ngrid,"OLRcs","outgoing longwave rad (cs).","W m-2",2,fluxtop_lw1)
1408	! call writediagfi(ngrid,"fluxsurfsw","sw surface flux.","W m-2",2,fluxsurf_sw)
1409	! call writediagfi(ngrid,"fluxsurflw","lw back radiation.","W m-2",2,fluxsurf_lw)
1410	! call writediagfi(ngrid,"fluxsurfswcs","sw surface flux (cs).","W m-2",2,fluxsurf_sw1)
1411	! call writediagfi(ngrid,"fluxsurflwcs","lw back radiation (cs).","W m-2",2,fluxsurf_lw1)
1412
1413
1414	call writediagfi(ngrid,"GND","heat flux from ground","W m-2",2,fluxgrd)
1415
1416	call writediagfi(ngrid,"DYN","dynamical heat input","W m-2",2,fluxdyn)
1417
1418	endif ! end of 'callrad'
1419
1420	if(enertest) then
1421
1422	if (calldifv) then
1423
1424	call writediagfi(ngrid,"q2","turbulent kinetic energy","J.kg^-1",3,q2)
1425	call writediagfi(ngrid,"sensibFlux","sensible heat flux","w.m^-2",2,sensibFlux)
1426
1427	! call writediagfi(ngrid,"dEzdiff","turbulent diffusion heating (-sensible flux)","w.m^-2",3,dEzdiff)
1428	! call writediagfi(ngrid,"dEdiff","integrated turbulent diffusion heating (-sensible flux)","w.m^-2",2,dEdiff)
1429	! call writediagfi(ngrid,"dEdiffs","In TurbDiff (correc rad+latent heat) surf nrj change","w.m^-2",2,dEdiffs)
1430
1431	endif
1432
1433	if (corrk) then
1434	call writediagfi(ngrid,"dEzradsw","radiative heating","w.m^-2",3,dEzradsw)
1435	call writediagfi(ngrid,"dEzradlw","radiative heating","w.m^-2",3,dEzradlw)
1436	endif
1437
1438	endif ! end of 'enertest'
1439
1440	! Temporary inclusions for winds diagnostics.
1441	call writediagfi(ngrid,"zdudif","Turbdiff tend. zon. wind","m s-2",3,zdudif)
1442	call writediagfi(ngrid,"zdudyn","Dyn. tend. zon. wind","m s-2",3,zdudyn)
1443
1444	! Temporary inclusions for heating diagnostics.
1445	call writediagfi(ngrid,"zdtsw","SW heating","T s-1",3,zdtsw)
1446	call writediagfi(ngrid,"zdtlw","LW heating","T s-1",3,zdtlw)
1447	call writediagfi(ngrid,"dtrad","radiative heating","K s-1",3,dtrad)
1448	call writediagfi(ngrid,"zdtdyn","Dyn. heating","T s-1",3,zdtdyn)
1449
1450	! For Debugging.
1451	call writediagfi(ngrid,'pphi','Geopotential',' ',3,pphi)
1452
1453
1454	! Output tracers.
1455	if (tracer) then
1456
1457	if (callmufi) then ! For now we assume an given order for tracers !
1458	#ifdef USE_QTEST
1459	! Microphysical tracers passed through dyn+phys(except mufi)
1460	call writediagfi(ngrid,"mu_m0as_dp","Dynphys only spherical mode 0th order moment",'kg/kg',3,zq(:,:,1))
1461	call writediagfi(ngrid,"mu_m3as_dp","Dynphys only spherical mode 3rd order moment",'kg/kg',3,zq(:,:,2))
1462	call writediagfi(ngrid,"mu_m0af_dp","Dynphys only fractal mode 0th order moment",'kg/kg',3,zq(:,:,3))
1463	call writediagfi(ngrid,"mu_m3af_dp","Dynphys only fractal mode 3rd order moment",'kg/kg',3,zq(:,:,4))
1464	! Microphysical tracers passed through mufi only
1465	call writediagfi(ngrid,"mu_m0as_mo","Mufi only spherical mode 0th order moment",'kg/kg',3,tpq(:,:,1))
1466	call writediagfi(ngrid,"mu_m3as_mo","Mufi only spherical mode 3rd order moment",'kg/kg',3,tpq(:,:,2))
1467	call writediagfi(ngrid,"mu_m0af_mo","Mufi only fractal mode 0th order moment",'kg/kg',3,tpq(:,:,3))
1468	call writediagfi(ngrid,"mu_m3af_mo","Mufi only fractal mode 3rd order moment",'kg/kg',3,tpq(:,:,4))
1469	#else
1470	call writediagfi(ngrid,"mu_m0as","Spherical mode 0th order moment",'kg/kg',3,zq(:,:,1))
1471	call writediagfi(ngrid,"mu_m3as","Spherical mode 3rd order moment",'kg/kg',3,zq(:,:,2))
1472	call writediagfi(ngrid,"mu_m0af","Fractal mode 0th order moment",'kg/kg',3,zq(:,:,3))
1473	call writediagfi(ngrid,"mu_m3af","Fractal mode 3rd order moment",'kg/kg',3,zq(:,:,4))
1474	#endif
1475	endif ! end of 'callmufi'
1476
1477	if ( callchim .and. (.not. callmufi) ) then
1478	call writediagfi(ngrid,"C2H2","C2H2",'kg/kg',3,zq(:,:,10))
1479	call writediagfi(ngrid,"C2H4","C2H4",'kg/kg',3,zq(:,:,12))
1480	call writediagfi(ngrid,"C2H6","C2H6",'kg/kg',3,zq(:,:,14))
1481	call writediagfi(ngrid,"C4H2","C4H2",'kg/kg',3,zq(:,:,26))
1482	call writediagfi(ngrid,"HCN","HCN",'kg/kg',3,zq(:,:,36))
1483	call writediagfi(ngrid,"HC3N","HC3N",'kg/kg',3,zq(:,:,42))
1484	else if ( callchim .and. callmufi ) then
1485	call writediagfi(ngrid,"C2H2","C2H2",'kg/kg',3,zq(:,:,14))
1486	call writediagfi(ngrid,"C2H4","C2H4",'kg/kg',3,zq(:,:,16))
1487	call writediagfi(ngrid,"C2H6","C2H6",'kg/kg',3,zq(:,:,18))
1488	call writediagfi(ngrid,"C4H2","C4H2",'kg/kg',3,zq(:,:,30))
1489	call writediagfi(ngrid,"HCN","HCN",'kg/kg',3,zq(:,:,40))
1490	call writediagfi(ngrid,"HC3N","HC3N",'kg/kg',3,zq(:,:,46))
1491	endif
1492
1493	endif ! end of 'tracer'
1494
1495	! XIOS outputs
1496	#ifdef CPP_XIOS
1497	! Send fields to XIOS: (NB these fields must also be defined as
1498	! <field id="..." /> in context_lmdz_physics.xml to be correctly used)
1499	CALL send_xios_field("ls",zls)
1500
1501	CALL send_xios_field("ps",ps)
1502	CALL send_xios_field("area",cell_area)
1503
1504	CALL send_xios_field("temperature",zt)
1505	CALL send_xios_field("u",zu)
1506	CALL send_xios_field("v",zv)
1507
1508	if (lastcall.and.is_omp_master) then
1509	write(,) "physiq: call xios_context_finalize"
1510	call xios_context_finalize
1511	endif
1512	#endif
1513
1514	icount=icount+1
1515
1516	end subroutine physiq
1517
1518	end module physiq_mod

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