source: trunk/LMDZ.TITAN/DOC/main.aux @ 1777

Last change on this file since 1777 was 987, checked in by jleconte, 11 years ago

11/06/2013 == JL+EM

  • User manual (+ sources) added in DOC.
File size: 13.0 KB
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1\relax
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6\bibstyle{abbrv}
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15\@writefile{toc}{\contentsline {chapter}{\numberline {1}Introduction}{3}}
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22\@writefile{toc}{\contentsline {chapter}{\numberline {2}Main features of the model}{4}}
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27\@writefile{toc}{\contentsline {section}{\numberline {2.2}Dynamical-Physical separation}{4}}
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31\@writefile{toc}{\contentsline {subsection}{\numberline {2.3.1}Horizontal grids}{5}}
32\@writefile{lof}{\contentsline {figure}{\numberline {2.2}{\ignorespaces Dynamical and physical grids for a 6 $\times $ 7 horizontal resolution. In the dynamics (but not in the physics) winds u and v are on specific staggered grids. Other dynamical variables are on the dynamical ``scalar'' grid. The physics uses the same ``scalar'' grid for all the variables, except that nodes are indexed in a single vector containing NGRID=2+(JM-1)$\times $IM points when counting from the north pole. N.B.: In the Fortran program, the following variables are used: {\tt  iim=IM , iip1=IM+1, jjm=JM , jjp1=JM+1}.}}{6}}
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34\@writefile{toc}{\contentsline {subsection}{\numberline {2.3.2}Vertical grids}{7}}
35\@writefile{lof}{\contentsline {figure}{\numberline {2.3}{\ignorespaces hybrides}}{7}}
36\newlabel{fg:hybrid}{{2.3}{7}}
37\@writefile{lof}{\contentsline {figure}{\numberline {2.4}{\ignorespaces Vertical grid description of the {\tt  llm (or nlayer)} atmospheric layers in the programming code ({\tt  llm} is the variable used in the dynamical part, and {\tt  nlayer} is used in the physical part). Variables {\tt  ap, bp} and {\tt  aps, bps} indicate the hybrid levels at the interlayer levels and at middle of the layers respectively. Pressure at the interlayer is $Plev(l)=ap(l)+bp(l) \times Ps$ and pressure in the middle of the layer is defined by $Play(l)=aps(l)+bps(l) \times Ps$, (where $Ps$ is surface pressure). Sigma coordinates are merely a specific case of hybrid coordinates such that $aps=0$ and $bps=P/Ps$. Note that for the hybrid coordinates, $bps=0$ above $\sim 50$~km, leading to purely pressure levels. The user can choose whether to run the model using hybrid coordinates or not by setting variable {\tt  hybrid} in run.def to True or False.}}{8}}
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42\@writefile{toc}{\contentsline {subsection}{\numberline {2.4.3}Tracers}{10}}
43\citation{Holt:79}
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46\@writefile{toc}{\contentsline {chapter}{\numberline {3}3D Dynamical Code}{11}}
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51\@writefile{toc}{\contentsline {paragraph}{la pression extensive:}{11}}
52\@writefile{lof}{\contentsline {figure}{\numberline {3.1}{\ignorespaces Grille obtenue avec 96 points en longitude et 73 en latitude et un zoom d'un facteur 3 centr\'e sur la m\'edit\'erann\'ee (grille utilis\'ee au laboratoire par Ali Harzallah)}}{12}}
53\newlabel{fg:zoom}{{3.1}{12}}
54\@writefile{lof}{\contentsline {figure}{\numberline {3.2}{\ignorespaces Disposition des variables dans la grille du LMD}}{13}}
55\newlabel{fg:grille}{{3.2}{13}}
56\@writefile{toc}{\contentsline {paragraph}{les trois composantes du flux de masse:}{13}}
57\@writefile{toc}{\contentsline {paragraph}{le facteur de Coriolis multipli\'e par l'aire de la maille:}{13}}
58\@writefile{toc}{\contentsline {paragraph}{la vorticit\'e potentielle absolue:}{13}}
59\@writefile{toc}{\contentsline {paragraph}{l'\'energie cin\'etique}{13}}
60\@writefile{toc}{\contentsline {paragraph}{\'equations du mouvement:}{13}}
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63\@writefile{toc}{\contentsline {paragraph}{\'equation thermodynamique:}{14}}
64\newlabel{eq:thermo}{{3.7}{14}}
65\@writefile{toc}{\contentsline {paragraph}{\'equation hydrostatique:}{14}}
66\@writefile{toc}{\contentsline {paragraph}{\'equations de continuit\'e:}{14}}
67\newlabel{eq:cont1}{{3.9}{14}}
68\newlabel{eq:cont2}{{3.10}{14}}
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70\@writefile{toc}{\contentsline {section}{\numberline {3.3}Dissipation}{14}}
71\@writefile{toc}{\contentsline {section}{\numberline {3.4}Sponge layer}{15}}
72\citation{Forg:99}
73\citation{Forg:99}
74\citation{Lewi:99}
75\@writefile{toc}{\contentsline {chapter}{\numberline {4}Physical parameterizations of the generic model: some references}{16}}
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80\@writefile{toc}{\contentsline {paragraph}{General references:}{16}}
81\@writefile{toc}{\contentsline {section}{\numberline {4.2}Radiative transfer}{16}}
82\@writefile{toc}{\contentsline {subsection}{\numberline {4.2.1}\bf  Absorption/emission and diffusion by dust:}{16}}
83\citation{Toon:89}
84\citation{Forg:98grl}
85\citation{Fouq:80}
86\citation{Ocke:97}
87\citation{Clan:91}
88\citation{Hour:93}
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90\citation{Hour:99}
91\citation{Mont:04jgr}
92\@writefile{toc}{\contentsline {section}{\numberline {4.3}Subgrid atmospheric dynamical processes}{17}}
93\@writefile{toc}{\contentsline {subsection}{\numberline {4.3.1}Turbulent diffusion in the upper layer}{17}}
94\@writefile{toc}{\contentsline {subsection}{\numberline {4.3.2}Convection}{17}}
95\@writefile{toc}{\contentsline {section}{\numberline {4.4}Surface thermal conduction}{17}}
96\@writefile{toc}{\contentsline {section}{\numberline {4.5}CO$_2$ Condensation}{17}}
97\@writefile{toc}{\contentsline {section}{\numberline {4.6}Tracer transport and sources}{17}}
98\@writefile{toc}{\contentsline {chapter}{\numberline {5}Running the model: a practice simulation}{19}}
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101\newlabel{loc:contact1}{{5}{19}}
102\@writefile{toc}{\contentsline {section}{\numberline {5.1}Installing the model from SVN}{19}}
103\@writefile{toc}{\contentsline {section}{\numberline {5.2}Installing the model without SVN}{21}}
104\@writefile{toc}{\contentsline {section}{\numberline {5.3}Compiling the model}{21}}
105\newlabel{sc:run1}{{5.3}{21}}
106\@writefile{toc}{\contentsline {section}{\numberline {5.4}Input files (initial states and def files)}{22}}
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108\@writefile{lof}{\contentsline {figure}{\numberline {5.1}{\ignorespaces Input/output data}}{23}}
109\newlabel{fig:inout}{{5.1}{23}}
110\@writefile{toc}{\contentsline {section}{\numberline {5.6}Visualizing the output files}{24}}
111\@writefile{toc}{\contentsline {subsection}{\numberline {5.6.1}Using GrAds to visualize outputs}{24}}
112\newlabel{loc:visu}{{5.6.1}{24}}
113\@writefile{toc}{\contentsline {section}{\numberline {5.7}Resuming a simulation}{25}}
114\@writefile{toc}{\contentsline {section}{\numberline {5.8}Chain simulations}{25}}
115\@writefile{toc}{\contentsline {section}{\numberline {5.9}Creating and modifying initial states}{25}}
116\newlabel{sc:newstart}{{5.9}{25}}
117\@writefile{toc}{\contentsline {subsection}{\numberline {5.9.1}Using program ``newstart''}{25}}
118\@writefile{toc}{\contentsline {subsection}{\numberline {5.9.2}Creating the initial start\_archive.nc file }{27}}
119\@writefile{toc}{\contentsline {subsection}{\numberline {5.9.3}Changing the horizontal or vertical grid resolution}{27}}
120\@writefile{toc}{\contentsline {chapter}{\numberline {6}Program organization and compilation script}{28}}
121\@writefile{lof}{\addvspace {10\p@ }}
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123\newlabel{sc:info}{{6}{28}}
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126\@writefile{toc}{\contentsline {section}{\numberline {6.2}Programming}{29}}
127\@writefile{toc}{\contentsline {section}{\numberline {6.3}Model organization}{29}}
128\@writefile{toc}{\contentsline {section}{\numberline {6.4}Compiling the model}{29}}
129\newlabel{sc:compil1}{{6.4}{29}}
130\@writefile{lof}{\contentsline {figure}{\numberline {6.1}{\ignorespaces Organigram of subroutine function physiq.F90}}{30}}
131\newlabel{fg:organi_phys}{{6.1}{30}}
132\@writefile{toc}{\contentsline {paragraph}{Help manual for the makegcm script}{31}}
133\@writefile{toc}{\contentsline {chapter}{\numberline {7}Input/Output}{33}}
134\@writefile{lof}{\addvspace {10\p@ }}
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136\newlabel{sc:io}{{7}{33}}
137\@writefile{toc}{\contentsline {section}{\numberline {7.1}NetCDF format}{33}}
138\@writefile{toc}{\contentsline {subsection}{\numberline {7.1.1}NetCDF file editor: ncdump}{33}}
139\@writefile{toc}{\contentsline {paragraph}{Main commands for ncdump}{33}}
140\@writefile{lof}{\contentsline {figure}{\numberline {7.1}{\ignorespaces Example of temperature data (in this case for present-day Mars) at a given time using GrADS visualization}}{34}}
141\newlabel{fg:grads}{{7.1}{34}}
142\@writefile{toc}{\contentsline {subsection}{\numberline {7.1.2}Graphic visualization of the NetCDF files using GrAds}{34}}
143\@writefile{toc}{\contentsline {section}{\numberline {7.2}Input and parameter files}{34}}
144\newlabel{loc:entrees}{{7.2}{34}}
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148\newlabel{sc:callphys.def}{{7.2.2}{37}}
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150\newlabel{sc:traceur.def}{{7.2.3}{39}}
151\@writefile{toc}{\contentsline {subsection}{\numberline {7.2.4}z2sig.def}{39}}
152\@writefile{toc}{\contentsline {subsection}{\numberline {7.2.5}Initialization files: start and startfi}{40}}
153\@writefile{lof}{\contentsline {figure}{\numberline {7.2}{\ignorespaces Organization of NetCDF files }}{41}}
154\newlabel{fg:netcdf}{{7.2}{41}}
155\@writefile{toc}{\contentsline {paragraph}{Physical and dynamical headers}{43}}
156\@writefile{toc}{\contentsline {paragraph}{Surface conditions}{43}}
157\@writefile{toc}{\contentsline {paragraph}{Physical and dynamical state variables}{43}}
158\@writefile{toc}{\contentsline {paragraph}{The ``control'' array}{44}}
159\@writefile{toc}{\contentsline {section}{\numberline {7.3}Output files}{46}}
160\@writefile{toc}{\contentsline {subsection}{\numberline {7.3.1}NetCDF restart files - restart.nc and restartfi.nc}{46}}
161\@writefile{toc}{\contentsline {subsection}{\numberline {7.3.2} NetCDF file - diagfi.nc}{46}}
162\@writefile{toc}{\contentsline {subsection}{\numberline {7.3.3}Stats files}{47}}
163\@writefile{toc}{\contentsline {chapter}{\numberline {8}Water Cycle Simulation}{51}}
164\@writefile{lof}{\addvspace {10\p@ }}
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166\newlabel{sc:water}{{8}{51}}
167\@writefile{toc}{\contentsline {chapter}{\numberline {9}1D version of the generic model}{54}}
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170\newlabel{sc:rcm1d}{{9}{54}}
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172\@writefile{toc}{\contentsline {section}{\numberline {9.2}1-D runs and input files}{54}}
173\@writefile{toc}{\contentsline {section}{\numberline {9.3}Output data}{56}}
174\@writefile{toc}{\contentsline {chapter}{\numberline {10}Zoomed simulations}{57}}
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177\newlabel{sc:zoom}{{10}{57}}
178\@writefile{toc}{\contentsline {section}{\numberline {10.1}To define the zoomed area}{57}}
179\@writefile{toc}{\contentsline {section}{\numberline {10.2}Making a zoomed initial state}{57}}
180\@writefile{toc}{\contentsline {section}{\numberline {10.3}Running a zoomed simulation and stability issue}{58}}
181\@writefile{toc}{\contentsline {chapter}{\numberline {11}Changing the radiative transfer properties}{59}}
182\@writefile{lof}{\addvspace {10\p@ }}
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184\newlabel{sc:kspectrum}{{11}{59}}
185\@writefile{toc}{\contentsline {section}{\numberline {11.1}Producing the high-resolution data}{59}}
186\@writefile{toc}{\contentsline {section}{\numberline {11.2}Performing the correlated-k conversion}{60}}
187\bibdata{newfred.bib}
188\@writefile{toc}{\contentsline {section}{\numberline {11.3}Implementing the absorption data in the GCM}{61}}
189\bibstyle{plain}
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