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physiq_mod.F90 @ 3684

Last change on this file since 3684 was 3684, checked in by debatzbr, 3 months ago
Cleaning for new diagnostics of optical thickness
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1	module physiq_mod
2
3	implicit none
4
5	contains
6
7	subroutine physiq(ngrid,nlayer,nq, &
8	firstcall,lastcall, &
9	pday,ptime,ptimestep, &
10	pplev,pplay,pphi, &
11	pu,pv,pt,pq, &
12	flxw, &
13	pdu,pdv,pdt,pdq,pdpsrf)
14
15	!!
16	use write_field_phy, only: Writefield_phy
17	!!
18	use ioipsl_getin_p_mod, only: getin_p
19	use radinc_h, only : L_NSPECTI,L_NSPECTV,naerkind, corrkdir, banddir
20	use gases_h, only: gnom, gfrac
21	use radcommon_h, only: sigma, glat, grav, BWNV, WNOI, DWNI, DWNV, WNOV
22	use suaer_corrk_mod, only: suaer_corrk
23	use aerosol_mod, only: i_haze, haze_prof
24	use surfdat_h, only: phisfi, zmea, zstd, zsig, zgam, zthe, &
25	dryness
26	use comdiurn_h, only: coslat, sinlat, coslon, sinlon
27	use comsaison_h, only: mu0, fract, dist_star, declin, right_ascen
28	use comsoil_h, only: nsoilmx, layer, mlayer, inertiedat, volcapa
29	use geometry_mod, only: latitude, longitude, cell_area, &
30	cell_area_for_lonlat_outputs
31	USE comgeomfi_h, only: totarea, totarea_planet
32	USE tracer_h, only: noms, mmol, radius, rho_q, qext, &
33	igcm_n2,igcm_ch4_gas,igcm_ch4_ice,igcm_haze,&
34	igcm_co_gas,igcm_co_ice,igcm_prec_haze,lw_n2,lw_ch4,lw_co,&
35	alpha_lift, alpha_devil, qextrhor, &
36	nesp, is_chim
37	use time_phylmdz_mod, only: ecritphy, iphysiq, nday
38	use phyetat0_mod, only: phyetat0,tab_cntrl_mod
39	use wstats_mod, only: callstats, wstats, mkstats
40	use phyredem, only: physdem0, physdem1
41	use planetwide_mod, only: planetwide_minval,planetwide_maxval,planetwide_sumval
42	use mod_phys_lmdz_para, only : is_master
43	use planete_mod, only: apoastr, periastr, year_day, peri_day, &
44	obliquit, z0, adjust, tpal
45	use comcstfi_mod, only: pi, g, rcp, r, rad, mugaz, cpp
46	use time_phylmdz_mod, only: daysec
47	use callkeys_mod, only: albedo_spectral_mode, calladj, calldifv, &
48	callrad, callsoil, nosurf, &
49	callconduct,callmolvis,callmoldiff, &
50	corrk, &
51	diurnal, enertest, fat1au, &
52	icetstep, intheat, iradia, kastprof, &
53	lwrite, mass_redistrib, meanOLR, &
54	fast,fasthaze,haze,metcloud,monoxcloud, &
55	n2cond,noseason_day,conservn2,conservch4, &
56	convergeps,kbo,triton,paleo,paleoyears,glaflow, &
57	carbox, methane,condmetsurf,condcosurf, &
58	oldplutovdifc,oldplutocorrk,oldplutosedim, &
59	optichaze,haze_proffix,haze_radproffix, &
60	source_haze, tsurfmax, albmin_ch4, &
61	season, sedimentation, &
62	specOLR, &
63	startphy_file, testradtimes, &
64	tracer, UseTurbDiff, &
65	global1d, szangle, &
66	callmufi
67	use check_fields_mod, only: check_physics_fields
68	use conc_mod, only: rnew, cpnew, ini_conc_mod
69	use phys_state_var_mod
70	use callcorrk_mod, only: callcorrk
71	use callcorrk_pluto_mod, only: callcorrk_pluto
72	use vdifc_mod, only: vdifc
73	use vdifc_pluto_mod, only: vdifc_pluto
74	use turbdiff_mod, only: turbdiff
75	use turb_mod, only : q2,sensibFlux,turb_resolved
76	use mass_redistribution_mod, only: mass_redistribution
77	use datafile_mod, only: datadir
78	USE vertical_layers_mod, ONLY: ap,bp,aps,bps,presnivs,pseudoalt
79	use mod_phys_lmdz_omp_data, ONLY: is_omp_master
80	USE mod_grid_phy_lmdz, ONLY: regular_lonlat, grid_type, unstructured
81	! Microphysical model (mp2m)
82	use mp2m_calmufi
83	use mp2m_diagnostics
84
85	#ifdef CPP_XIOS
86	use xios_output_mod, only: initialize_xios_output, &
87	update_xios_timestep, &
88	send_xios_field
89	use wxios, only: wxios_context_init, xios_context_finalize
90	#endif
91	USE mod_grid_phy_lmdz, ONLY: grid_type,unstructured,regular_lonlat
92	use write_output_mod, only: write_output
93
94	implicit none
95
96
97	!==================================================================
98	!
99	! Purpose
100	! -------
101	! Central subroutine for all the physics parameterisations in the
102	! Pluto model. Originally adapted from the Mars LMDZ model.
103	!
104	! The model can be run with 1 (N2) or more tracer transport
105	! depending on the value of "tracer" in file "callphys.def".
106	!
107	! It includes:
108	!
109	! I. Initialization :
110	! I.1 Firstcall initializations.
111	! I.2 Initialization for every call to physiq.
112	!
113	! II.1 Thermosphere
114	! II.2 Compute radiative transfer tendencies (longwave and shortwave) :
115	! II.2.a Option 1 : Call correlated-k radiative transfer scheme.
116	! II.2.b Option 2 : Atmosphere has no radiative effect.
117	!
118	! III. Vertical diffusion (turbulent mixing)
119	!
120	! IV. Convection :
121	! IV.a Dry convective adjusment
122	!
123	! V. Condensation and sublimation of gases.
124	!
125	! VI. Tracers
126	! VI.1. Microphysics / Aerosols and particles.
127	! VI.2. Updates (pressure variations, surface budget).
128	! VI.3. Surface Tracer Update.
129	!
130	! VII. Surface and sub-surface soil temperature.
131	!
132	! VIII. Perform diagnostics and write output files.
133	!
134	!
135	! arguments
136	! ---------
137	!
138	! INPUT
139	! -----
140	!
141	! ngrid Size of the horizontal grid.
142	! nlayer Number of vertical layers.
143	! nq Number of advected fields.
144	!
145	! firstcall True at the first call.
146	! lastcall True at the last call.
147	!
148	! pday Number of days counted from the North. Spring equinoxe.
149	! ptime Universal time (0<ptime<1): ptime=0.5 at 12:00 UT.
150	! ptimestep timestep (s).
151	!
152	! pplay(ngrid,nlayer) Pressure at the middle of the layers (Pa).
153	! pplev(ngrid,nlayer+1) Intermediate pressure levels (Pa).
154	! pphi(ngrid,nlayer) Geopotential at the middle of the layers (m2.s-2).
155	!
156	! pu(ngrid,nlayer) u, zonal component of the wind (ms-1).
157	! pv(ngrid,nlayer) v, meridional component of the wind (ms-1).
158	!
159	! pt(ngrid,nlayer) Temperature (K).
160	!
161	! pq(ngrid,nlayer,nq) Advected fields.
162	!
163	! pudyn(ngrid,nlayer) \
164	! pvdyn(ngrid,nlayer) \ Dynamical temporal derivative for the
165	! ptdyn(ngrid,nlayer) / corresponding variables.
166	! pqdyn(ngrid,nlayer,nq) /
167	! flxw(ngrid,nlayer) vertical mass flux (kg/s) at layer lower boundary
168	!
169	! OUTPUT
170	! ------
171	!
172	! pdu(ngrid,nlayer) \
173	! pdv(ngrid,nlayer) \ Temporal derivative of the corresponding
174	! pdt(ngrid,nlayer) / variables due to physical processes.
175	! pdq(ngrid,nlayer) /
176	! pdpsrf(ngrid) /
177	!
178	!
179	! Authors
180	! -------
181	! Frederic Hourdin 15/10/93
182	! Francois Forget 1994
183	! Christophe Hourdin 02/1997
184	! Subroutine completely rewritten by F. Forget (01/2000)
185	! Water ice clouds: Franck Montmessin (update 06/2003)
186	! Radiatively active tracers: J.-B. Madeleine (10/2008-06/2009)
187	! New correlated-k radiative scheme: R. Wordsworth (2009)
188	! Many specifically Martian subroutines removed: R. Wordsworth (2009)
189	! Improved water cycle: R. Wordsworth / B. Charnay (2010)
190	! To F90: R. Wordsworth (2010)
191	! New turbulent diffusion scheme: J. Leconte (2012)
192	! Loops converted to F90 matrix format: J. Leconte (2012)
193	! No more ngrid/nq, F90 commons and adaptation to parallel: A. Spiga (2012)
194	! Purge of the code : M. Turbet (2015)
195	! Photochemical core developped by F. Lefevre: B. Charnay (2017)
196	! Purge for Pluto model : A. Falco (2024)
197	! Adapting to Pluto : A. Falco, T. Bertrand (2024)
198	! Microphysical moment model: B. de Batz de Trenquelléon (2024)
199	!==================================================================
200
201
202	! 0. Declarations :
203	! ------------------
204
205	include "netcdf.inc"
206
207	! Arguments :
208	! -----------
209
210	! INPUTS:
211	! -------
212
213	integer,intent(in) :: ngrid ! Number of atmospheric columns.
214	integer,intent(in) :: nlayer ! Number of atmospheric layers.
215	integer,intent(in) :: nq ! Number of tracers.
216
217	logical,intent(in) :: firstcall ! Signals first call to physics.
218	logical,intent(in) :: lastcall ! Signals last call to physics.
219
220	real,intent(in) :: pday ! Number of elapsed sols since reference Ls=0.
221	real,intent(in) :: ptime ! "Universal time", given as fraction of sol (e.g.: 0.5 for noon).
222	real,intent(in) :: ptimestep ! Physics timestep (s).
223	real,intent(in) :: pplev(ngrid,nlayer+1) ! Inter-layer pressure (Pa).
224	real,intent(in) :: pplay(ngrid,nlayer) ! Mid-layer pressure (Pa).
225	real,intent(in) :: pphi(ngrid,nlayer) ! Geopotential at mid-layer (m2s-2).
226	real,intent(in) :: pu(ngrid,nlayer) ! Zonal wind component (m/s).
227	real,intent(in) :: pv(ngrid,nlayer) ! Meridional wind component (m/s).
228	real,intent(in) :: pt(ngrid,nlayer) ! Temperature (K).
229	real,intent(in) :: pq(ngrid,nlayer,nq) ! Tracers (kg/kg_of_air).
230	real,intent(in) :: flxw(ngrid,nlayer) ! Vertical mass flux (ks/s) at lower boundary of layer
231
232	! OUTPUTS:
233	! --------
234
235	! Physical tendencies :
236
237	real,intent(out) :: pdu(ngrid,nlayer) ! Zonal wind tendencies (m/s/s).
238	real,intent(out) :: pdv(ngrid,nlayer) ! Meridional wind tendencies (m/s/s).
239	real,intent(out) :: pdt(ngrid,nlayer) ! Temperature tendencies (K/s).
240	real,intent(out) :: pdq(ngrid,nlayer,nq) ! Tracer tendencies (kg/kg_of_air/s).
241	real,intent(out) :: pdpsrf(ngrid) ! Surface pressure tendency (Pa/s).
242
243	! Local saved variables:
244	! ----------------------
245	integer,save :: day_ini ! Initial date of the run (sol since Ls=0).
246	integer,save :: icount ! Counter of calls to physiq during the run.
247	!$OMP THREADPRIVATE(day_ini,icount)
248
249	!Pluto specific
250	REAL,save :: acond,bcond
251	REAL,save :: tcond1p4Pa
252	DATA tcond1p4Pa/38/
253
254	! Local variables :
255	! -----------------
256	! Tendencies for the paleoclimate mode
257	REAL qsurfyear(ngrid,nq) ! kg.m-2 averaged mass of ice lost/gained in the last Pluto year of the run
258	REAL phisfinew(ngrid) ! geopotential of the bedrock (= phisfi-qsurf/1000*g)
259	REAL qsurfpal(ngrid,nq) ! qsurf after a paleoclimate step : for physdem1 and restartfi
260	REAL phisfipal(ngrid) ! geopotential after a paleoclimate step : for physdem1 and restartfi
261	REAL oblipal ! change of obliquity
262	REAL peri_daypal ! new periday
263	REAL eccpal ! change of eccentricity
264	REAL tpalnew ! change of time
265	REAL adjustnew ! change in N2 ice albedo
266	REAL pdaypal ! new pday = day_ini + step
267	REAL zdt_tot ! time range corresponding to the flux of qsurfyear
268	REAL massacc(nq) ! accumulated mass
269	REAL masslost(nq) ! accumulated mass
270
271	REAL globave ! globalaverage 2D ps
272	REAL globaveice(nq) ! globalaverage 2D ice
273	REAL globavenewice(nq) ! globalaverage 2D ice
274	INTEGER lecttsoil ! lecture of tsoil from proftsoil
275	REAL qsurf1(ngrid,nq) ! saving qsurf to calculate flux over long timescales kg.m-2
276	REAL flusurf(ngrid,nq) ! flux cond/sub kg.m-2.s-1
277	REAL flusurfold(ngrid,nq) ! old flux cond/sub kg.m-2.s-1
278	REAL zplev(ngrid,nlayer+1),zplay(ngrid,nlayer)
279
280	REAL,SAVE :: ptime0 ! store the first time
281	REAL dstep
282	REAL,SAVE :: glastep=20 ! step in pluto day to spread glacier
283
284	! Aerosol (dust or ice) extinction optical depth at reference wavelength
285	! for the "naerkind" optically active aerosols:
286
287	real,save,allocatable :: dtau_aer(:,:,:) ! Aerosols
288	!$OMP THREADPRIVATE(dtau_aer)
289	real zh(ngrid,nlayer) ! Potential temperature (K).
290	real pw(ngrid,nlayer) ! Vertical velocity (m/s). (NOTE : >0 WHEN DOWNWARDS !!)
291	real omega(ngrid,nlayer) ! omega velocity (Pa/s, >0 when downward)
292
293	integer i,l,ig,ierr,iq,nw,isoil,iesp
294
295	real zls ! Solar longitude (radians).
296	real zlss ! Sub solar point longitude (radians).
297	real zday ! Date (time since Ls=0, calculated in sols).
298	REAL,save :: saveday ! saved date
299	REAL,save :: savedeclin ! saved declin
300	real zzlay(ngrid,nlayer) ! Altitude at the middle of the atmospheric layers.
301	real zzlev(ngrid,nlayer+1) ! Altitude at the atmospheric layer boundaries.
302
303	! TENDENCIES due to various processes :
304
305	! For Surface Temperature : (K/s)
306	real zdtsurf(ngrid) ! Cumulated tendencies.
307	real zdtsurfmr(ngrid) ! Mass_redistribution routine.
308	real zdtsurfc(ngrid) ! Condense_n2 routine.
309	real zdtsdif(ngrid) ! Turbdiff/vdifc routines.
310
311	! For Atmospheric Temperatures : (K/s)
312	real dtlscale(ngrid,nlayer) ! Largescale routine.
313	real zdtc(ngrid,nlayer) ! Condense_n2 routine.
314	real zdtdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
315	real zdtmr(ngrid,nlayer) ! Mass_redistribution routine.
316	real zdtsw1(ngrid,nlayer), zdtlw1(ngrid,nlayer) ! Callcorrk routine.
317	real zdtchim(ngrid,nlayer) ! Calchim routine.
318
319	! For Surface Tracers : (kg/m2/s)
320	real dqsurf(ngrid,nq) ! Cumulated tendencies.
321	!real zdqsurfc(ngrid) ! Condense_n2 routine.
322	REAL zdqsc(ngrid,nq) ! Condense_n2 routine.
323	real zdqsdif(ngrid,nq) ! Turbdiff/vdifc routines.
324	real zdqssed(ngrid,nq) ! Callsedim routine.
325	real zdqsurfmr(ngrid,nq) ! Mass_redistribution routine.
326
327	! For Tracers : (kg/kg_of_air/s)
328	real zdqc(ngrid,nlayer,nq) ! Condense_n2 routine.
329	real zdqadj(ngrid,nlayer,nq) ! Convadj routine.
330	real zdqdif(ngrid,nlayer,nq) ! Turbdiff/vdifc routines.
331	real zdqevap(ngrid,nlayer) ! Turbdiff routine.
332	real zdqsed(ngrid,nlayer,nq) ! Callsedim routine.
333	real zdqmr(ngrid,nlayer,nq) ! Mass_redistribution routine.
334	REAL,allocatable,save :: zdqchim(:,:,:) ! Calchim_asis routine
335	REAL,allocatable,save :: zdqschim(:,:) ! Calchim_asis routine
336	!$OMP THREADPRIVATE(zdqchim,zdqschim)
337
338	!! PLUTO variables
339	REAL zdqch4cloud(ngrid,nlayer,nq)
340	REAL zdqsch4cloud(ngrid,nq)
341	REAL zdtch4cloud(ngrid,nlayer)
342	REAL zdqcocloud(ngrid,nlayer,nq)
343	REAL zdqscocloud(ngrid,nq)
344	REAL zdtcocloud(ngrid,nlayer)
345	REAL rice_ch4(ngrid,nlayer) ! Methane ice geometric mean radius (m)
346	REAL rice_co(ngrid,nlayer) ! CO ice geometric mean radius (m)
347
348	REAL zdqsch4fast(ngrid) ! used only for fast model nogcm
349	REAL zdqch4fast(ngrid) ! used only for fast model nogcm
350	REAL zdqscofast(ngrid) ! used only for fast model nogcm
351	REAL zdqcofast(ngrid) ! used only for fast model nogcm
352	REAL zdqflow(ngrid,nq)
353
354	REAL zdtconduc(ngrid,nlayer) ! (K/s)
355	REAL zdumolvis(ngrid,nlayer)
356	REAL zdvmolvis(ngrid,nlayer)
357	real zdqmoldiff(ngrid,nlayer,nq)
358
359	! Haze relatated tendancies
360	REAL zdqhaze(ngrid,nlayer,nq)
361	REAL zdqprodhaze(ngrid,nq)
362	REAL zdqsprodhaze(ngrid)
363	REAL zdqhaze_col(ngrid)
364	REAL zdqphot_prec(ngrid,nlayer)
365	REAL zdqphot_ch4(ngrid,nlayer)
366	REAL zdqconv_prec(ngrid,nlayer)
367	REAL zdq_source(ngrid,nlayer,nq)
368	! Fast Haze relatated tendancies
369	REAL fluxbot(ngrid)
370	REAL gradflux(ngrid)
371	REAL fluxlym_sol_bot(ngrid) ! Solar flux Lyman alpha ph.m-2.s-1 reaching the surface
372	REAL fluxlym_ipm_bot(ngrid) ! IPM (Interplanetary) flux Lyman alpha ph.m-2.s-1 reaching the surface
373	REAL flym_sol(ngrid) ! Incident Solar flux Lyman alpha ph.m-2.s-1
374	REAL flym_ipm(ngrid) ! Incident IPM (Interplanetary) flux Lyman alpha ph.m-2.s-1
375	REAL zfluxuv ! Lyman alpha flux at 1AU
376
377	REAL array_zero1(ngrid)
378	REAL array_zero2(ngrid,nlayer)
379
380	! For Winds : (m/s/s)
381	real zdvadj(ngrid,nlayer), zduadj(ngrid,nlayer) ! Convadj routine.
382	real zdumr(ngrid,nlayer), zdvmr(ngrid,nlayer) ! Mass_redistribution routine.
383	real zdvdif(ngrid,nlayer), zdudif(ngrid,nlayer) ! Turbdiff/vdifc routines.
384	real zdhdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
385	real zdhadj(ngrid,nlayer) ! Convadj routine.
386	REAL zdvc(ngrid,nlayer),zduc(ngrid,nlayer) ! condense_n2 routine.
387
388	! For Pressure and Mass :
389	real zdmassmr(ngrid,nlayer) ! Atmospheric Mass tendency for mass_redistribution (kg_of_air/m2/s).
390	real zdmassmr_col(ngrid) ! Atmospheric Column Mass tendency for mass_redistribution (kg_of_air/m2/s).
391	real zdpsrfmr(ngrid) ! Pressure tendency for mass_redistribution routine (Pa/s).
392
393	! Local variables for MICROPHYSICS:
394	! ---------------------------------
395	real gzlat(ngrid,nlayer) ! Altitude-Latitude-dependent gravity (this should be stored elsewhere...).
396	real pdqmufi(ngrid,nlayer,nq) ! Microphysical tendency (X/kg_of_air/s).
397	real pdqmufi_prod(ngrid,nlayer,nq) ! Aerosols production tendency (kg/kg_of_air/s).
398	real int2ext(ngrid,nlayer) ! Intensive to extensive factor (kg_air/m3: X/kg_air --> X/m3).
399
400	! Local variables for LOCAL CALCULATIONS:
401	! ---------------------------------------
402	real zflubid(ngrid)
403	real zplanck(ngrid),zpopsk(ngrid,nlayer)
404	REAL zdum1(ngrid,nlayer)
405	REAL zdum2(ngrid,nlayer)
406	real ztim1,ztim2,ztim3, z1,z2
407	real ztime_fin
408	real zdh(ngrid,nlayer)
409	real gmplanet
410	real taux(ngrid),tauy(ngrid)
411
412	! local variables for DIAGNOSTICS : (diagfi & stat)
413	! -------------------------------------------------
414	real ps(ngrid) ! Surface Pressure.
415	real zt(ngrid,nlayer) ! Atmospheric Temperature.
416	real zu(ngrid,nlayer),zv(ngrid,nlayer) ! Zonal and Meridional Winds.
417	real zq(ngrid,nlayer,nq) ! Atmospheric Tracers.
418	real zdtadj(ngrid,nlayer) ! Convadj Diagnostic.
419	real zdtdyn(ngrid,nlayer) ! Dynamical Heating (K/s).
420	real zdudyn(ngrid,nlayer) ! Dynamical Zonal Wind tendency (m.s-2).
421
422	real reff(ngrid,nlayer) ! Effective dust radius (used if doubleq=T).
423	real vmr(ngrid,nlayer) ! volume mixing ratio
424	real time_phys
425
426	real ISR,ASR,OLR,GND,DYN,GSR,Ts1,Ts2,Ts3,TsS ! for Diagnostic.
427
428	real qcol(ngrid,nq) ! Tracer Column Mass (kg/m2).
429
430	! Pluto adding variables
431	real vmr_ch4(ngrid) ! vmr ch4
432	real vmr_co(ngrid) ! vmr co
433	real rho(ngrid,nlayer) ! density
434	real zrho_ch4(ngrid,nlayer) ! density methane kg.m-3
435	real zrho_co(ngrid,nlayer) ! density CO kg.m-3
436	real zrho_haze(ngrid,nlayer) ! density haze kg.m-3
437	real zdqrho_photprec(ngrid,nlayer) !photolysis rate kg.m-3.s-1
438	real zq1temp_ch4(ngrid) !
439	real qsat_ch4(ngrid) !
440	real qsat_ch4_l1(ngrid) !
441	! CHARACTER(LEN=20) :: txt ! to temporarly store text for eddy tracers
442	real profmmr(ngrid,nlayer) ! fixed profile of haze if haze_proffix
443	real sensiblehf1(ngrid) ! sensible heat flux
444	real sensiblehf2(ngrid) ! sensible heat flux
445
446	! included by RW for H2O Manabe scheme
447	real rneb_man(ngrid,nlayer) ! H2O cloud fraction (moistadj).
448	real rneb_lsc(ngrid,nlayer) ! H2O cloud fraction (large scale).
449
450	! to test energy conservation (RW+JL)
451	real mass(ngrid,nlayer),massarea(ngrid,nlayer)
452	real dEtot, dEtots, AtmToSurf_TurbFlux
453	real,save :: dEtotSW, dEtotsSW, dEtotLW, dEtotsLW
454	!$OMP THREADPRIVATE(dEtotSW, dEtotsSW, dEtotLW, dEtotsLW)
455
456	!JL12 conservation test for mean flow kinetic energy has been disabled temporarily
457	real dtmoist_max,dtmoist_min
458	real dItot, dItot_tmp, dVtot, dVtot_tmp
459	real dWtot, dWtot_tmp, dWtots, dWtots_tmp
460
461	real nconsMAX, vdifcncons(ngrid), cadjncons(ngrid) ! Vdfic water conservation test. By RW
462
463	real muvar(ngrid,nlayer+1) ! For Runaway Greenhouse 1D study. By RW
464
465	! Non-oro GW tendencies
466	REAL d_u_hin(ngrid,nlayer), d_v_hin(ngrid,nlayer)
467	REAL d_t_hin(ngrid,nlayer)
468	! Diagnostics 2D of gw_nonoro
469	REAL zustrhi(ngrid), zvstrhi(ngrid)
470
471	real :: tsurf2(ngrid)
472	!! real :: flux_o(ngrid),flux_g(ngrid)
473	real :: flux_g(ngrid)
474	real :: flux_sens_lat(ngrid)
475	real :: qsurfint(ngrid,nq)
476
477	! local variables for skin depth check
478	real :: therm_inertia(ngrid,nsoilmx)
479	real :: inertia_min,inertia_max
480	real :: diurnal_skin ! diurnal skin depth (m)
481	real :: annual_skin ! anuual skin depth (m)
482
483	! when no startfi file is asked for init
484	real alpha,lay1 ! coefficients for building layers
485	integer iloop
486
487	! flags to trigger extra sanity checks
488	logical, save :: check_physics_inputs=.false.
489	logical, save :: check_physics_outputs=.false.
490	!$OPM THREADPRIVATE(check_physics_inputs,check_physics_outputs)
491
492	! Misc
493	character*2 :: str2
494	character(len=10) :: tmp1
495	character(len=10) :: tmp2
496	!==================================================================================================
497
498	! -----------------
499	! I. INITIALISATION
500	! -----------------
501
502	! --------------------------------
503	! I.1 First Call Initialisation.
504	! --------------------------------
505	if (firstcall) then
506	call getin_p("check_physics_inputs", check_physics_inputs)
507	call getin_p("check_physics_outputs", check_physics_outputs)
508
509	! Allocate saved arrays (except for 1D model, where this has already
510	! been done)
511	if (ngrid>1) call phys_state_var_init(nq)
512
513	! Variables set to 0
514	! ~~~~~~~~~~~~~~~~~~
515	dtrad(:,:) = 0.0
516	fluxrad(:) = 0.0
517	tau_col(:) = 0.0
518	zdtsw(:,:) = 0.0
519	zdtlw(:,:) = 0.0
520	zdqc(:,:,:)=0.
521	zdqsc(:,:)=0.
522
523	! Initialize tracer names, indexes and properties.
524	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
525	IF (.NOT.ALLOCATED(noms)) ALLOCATE(noms(nq)) ! (because noms is an argument of physdem1 whether or not tracer is on)
526	if (tracer) then
527	call initracer(ngrid,nq)
528	! if(photochem) then !AF24: removed
529	endif
530	! Initialize aerosol indexes.
531	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~
532	! call iniaerosol
533	! allocate related local arrays
534	! (need be allocated instead of automatic because of "naerkind")
535	allocate(dtau_aer(ngrid,nlayer,naerkind))
536
537	#ifdef CPP_XIOS
538	! Initialize XIOS context
539	write(,) "physiq: call wxios_context_init"
540	CALL wxios_context_init
541	#endif
542
543	! Read 'startfi.nc' file.
544	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
545	call phyetat0(startphy_file, &
546	ngrid,nlayer,"startfi.nc",0,0,nsoilmx,nq, &
547	day_ini,time_phys,tsurf,tsoil,emis,q2,qsurf,inertiedat)
548
549	if (.not.startphy_file) then
550	! starting without startfi.nc and with callsoil
551	! is not yet possible as soildepth default is not defined
552	if (callsoil) then
553	! default mlayer distribution, following a power law:
554	! mlayer(k)=lay1alpha*(k-1/2)
555	lay1=2.e-4
556	alpha=2
557	do iloop=0,nsoilmx-1
558	mlayer(iloop)=lay1(alpha*(iloop-0.5))
559	enddo
560	lay1=sqrt(mlayer(0)*mlayer(1))
561	alpha=mlayer(1)/mlayer(0)
562	do iloop=1,nsoilmx
563	layer(iloop)=lay1(alpha*(iloop-1))
564	enddo
565	endif
566	! additionnal "academic" initialization of physics
567	if (is_master) write(,) "Physiq: initializing tsurf(:) to pt(:,1) !!"
568	tsurf(:)=pt(:,1)
569	if (is_master) write(,) "Physiq: initializing tsoil(:) to pt(:,1) !!"
570	do isoil=1,nsoilmx
571	tsoil(1:ngrid,isoil)=tsurf(1:ngrid)
572	enddo
573	if (is_master) write(,) "Physiq: initializing day_ini to pday !"
574	day_ini=pday
575	endif
576
577	if (pday.ne.day_ini) then
578	write(,) "ERROR in physiq.F90:"
579	write(,) "bad synchronization between physics and dynamics"
580	write(,) "dynamics day: ",pday
581	write(,) "physics day: ",day_ini
582	stop
583	endif
584
585	write (,) 'In physiq day_ini =', day_ini
586
587	! Initialize albedo calculation.
588	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
589	albedo(:,:)=0.0
590	albedo_bareground(:)=0.0
591	albedo_snow_SPECTV(:)=0.0
592	albedo_n2_ice_SPECTV(:)=0.0
593
594	ptime0=ptime
595	write (,) 'In physiq ptime0 =', ptime
596
597	call surfini(ngrid,nq,qsurf,albedo,albedo_bareground,albedo_snow_SPECTV,albedo_n2_ice_SPECTV)
598
599	! Initialize orbital calculation.
600	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
601	call iniorbit(apoastr,periastr,year_day,peri_day,obliquit)
602
603	savedeclin=0.
604	saveday=pday
605	adjust=0. ! albedo adjustment for convergeps
606
607	! Initialize soil.
608	! ~~~~~~~~~~~~~~~~
609	if (callsoil) then
610	call soil(ngrid,nsoilmx,firstcall,lastcall,inertiedat, &
611	ptimestep,tsurf,tsoil,capcal,fluxgrd)
612	else ! else of 'callsoil'.
613	print*,'WARNING! Thermal conduction in the soil turned off'
614	capcal(:)=1.e6
615	fluxgrd(:)=intheat
616	print*,'Flux from ground = ',intheat,' W m^-2'
617	endif ! end of 'callsoil'.
618
619	icount=1
620
621	! Initialize variable for dynamical heating and zonal wind tendency diagnostic
622	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
623	ztprevious(:,:)=pt(:,:)
624	zuprevious(:,:)=pu(:,:)
625
626	if(meanOLR)then
627	call system('rm -f rad_bal.out') ! to record global radiative balance.
628	call system('rm -f tem_bal.out') ! to record global mean/max/min temperatures.
629	call system('rm -f h2o_bal.out') ! to record global hydrological balance.
630	endif
631
632	if (ngrid.ne.1) then ! Note : no need to create a restart file in 1d.
633	call physdem0("restartfi.nc",longitude,latitude,nsoilmx,ngrid,nlayer,nq, &
634	ptimestep,pday+nday,time_phys,cell_area, &
635	albedo_bareground,zmea,zstd,zsig,zgam,zthe)
636	endif
637
638	! Initialize correlated-k.
639	! ~~~~~~~~~~~~~~~~~~~~~~~~
640	if (corrk) then
641	! We initialise the spectral grid here instead of
642	! at firstcall of callcorrk so we can output XspecIR, XspecVI
643	! when using Dynamico
644	if (is_master) print*, "physiq_mod: Correlated-k data base folder:",trim(datadir)
645	call getin_p("corrkdir",corrkdir)
646	if (is_master) print*,"corrkdir = ", corrkdir
647	write (tmp1, '(i4)') L_NSPECTI
648	write (tmp2, '(i4)') L_NSPECTV
649	banddir=trim(trim(adjustl(tmp1))//'x'//trim(adjustl(tmp2)))
650	banddir=trim(trim(adjustl(corrkdir))//'/'//trim(adjustl(banddir)))
651	call setspi !Basic infrared properties.
652	call setspv ! Basic visible properties.
653	call sugas_corrk ! Set up gaseous absorption properties.
654	if (optichaze) then
655	call suaer_corrk ! Set up aerosol optical properties.
656	endif
657	endif
658
659	! Initialize microphysics.
660	! ~~~~~~~~~~~~~~~~~~~~~~~~
661	IF (callmufi) THEN
662	! Initialize microphysics arrays.
663	call inimufi(ptimestep)
664	ENDIF ! end callmufi
665
666	!! call WriteField_phy("post_corrk_firstcall_qsurf",qsurf(1:ngrid,igcm_h2o_gas),1)
667	! XIOS outputs
668	#ifdef CPP_XIOS
669
670	if (is_master) write(,) "physiq: call initialize_xios_output"
671	call initialize_xios_output(pday,ptime,ptimestep,daysec,year_day, &
672	presnivs,pseudoalt,mlayer,WNOI,WNOV)
673	#endif
674
675	!! call WriteField_phy("post_xios_qsurf",qsurf(1:ngrid,igcm_h2o_gas),1)
676
677	write(,) "physiq: end of firstcall"
678	endif ! end of 'firstcall'
679
680	!! call WriteField_phy("post_firstcall_qsurf",qsurf(1:ngrid,igcm_h2o_gas),1)
681	!! call writediagfi(ngrid,"firstcall_post_qsurf"," "," ",2,qsurf(1:ngrid,igcm_h2o_gas))
682
683	if (check_physics_inputs) then
684	!check the validity of input fields coming from the dynamics
685	call check_physics_fields("begin physiq:", pt, pu, pv, pplev, pq)
686	endif
687
688	! call writediagfi(ngrid,"pre_physical_rnat"," "," ",2,rnat)
689	! call writediagfi(ngrid,"pre_physical_capcal"," "," ",2,capcal)
690
691	! ------------------------------------------------------
692	! I.2 Initializations done at every physical timestep:
693	! ------------------------------------------------------
694
695	#ifdef CPP_XIOS
696	! update XIOS time/calendar
697	call update_xios_timestep
698	#endif
699
700	! Initialize various variables
701	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
702
703	pdt(1:ngrid,1:nlayer) = 0.0
704	zdtsurf(1:ngrid) = 0.0
705	pdq(1:ngrid,1:nlayer,1:nq) = 0.0
706	dqsurf(1:ngrid,1:nq)= 0.0
707	pdu(1:ngrid,1:nlayer) = 0.0
708	pdv(1:ngrid,1:nlayer) = 0.0
709	pdpsrf(1:ngrid) = 0.0
710	zflubid(1:ngrid) = 0.0
711	flux_sens_lat(1:ngrid) = 0.0
712	taux(1:ngrid) = 0.0
713	tauy(1:ngrid) = 0.0
714
715	if (conservn2) then
716	write(,) 'conservn2 iniloop'
717	call testconservmass(ngrid,nlayer,pplev(:,1),qsurf(:,1))
718	endif
719
720	zday=pday+ptime ! Compute time, in sols (and fraction thereof).
721
722	! Compute Stellar Longitude (Ls), and orbital parameters.
723	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
724	if (season) then
725	call stellarlong(zday,zls)
726	else
727	call stellarlong(noseason_day,zls)
728	end if
729
730	! Get Lyman alpha flux at specific Ls
731	if (callmufi.or.haze) then
732	call lymalpha(zls,zfluxuv)
733	print*, 'Haze lyman-alpha zls,zfluxuv=',zls,zfluxuv
734	end if
735
736	IF (triton) then
737	CALL orbitetriton(zls,zday,dist_star,declin)
738	ELSE
739	call orbite(zls,dist_star,declin,right_ascen)
740	ENDIF
741
742	if (diurnal) then
743	zlss=-2.pi(zday-.5)
744	else if(diurnal .eqv. .false.) then
745	zlss=9999.
746	endif
747
748	glat(:) = g !AF24: removed oblateness
749
750	! Compute geopotential between layers.
751	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
752	zzlay(1:ngrid,1:nlayer)=pphi(1:ngrid,1:nlayer)
753	do l=1,nlayer
754	zzlay(1:ngrid,l)= zzlay(1:ngrid,l)/glat(1:ngrid)
755	enddo
756
757	zzlev(1:ngrid,1)=0.
758
759	do l=2,nlayer
760	do ig=1,ngrid
761	z1=(pplay(ig,l-1)+pplev(ig,l))/(pplay(ig,l-1)-pplev(ig,l))
762	z2=(pplev(ig,l)+pplay(ig,l))/(pplev(ig,l)-pplay(ig,l))
763	zzlev(ig,l)=(z1zzlay(ig,l-1)+z2zzlay(ig,l))/(z1+z2)
764	enddo
765	enddo
766
767	!Altitude of top interface (nlayer+1), using the thicknesss of the level below the top one. LT22
768
769	zzlev(1:ngrid,nlayer+1) = 2*zzlev(1:ngrid,nlayer)-zzlev(1:ngrid,nlayer-1)
770
771	! Compute potential temperature
772	! Note : Potential temperature calculation may not be the same in physiq and dynamic...
773	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
774	do l=1,nlayer
775	do ig=1,ngrid
776	zpopsk(ig,l)=(pplay(ig,l)/pplev(ig,1))**rcp
777	zh(ig,l)=pt(ig,l)/zpopsk(ig,l)
778	mass(ig,l) = (pplev(ig,l) - pplev(ig,l+1))/glat(ig)
779	massarea(ig,l)=mass(ig,l)*cell_area(ig)
780	enddo
781	enddo
782
783	! Compute vertical velocity (m/s) from vertical mass flux
784	! w = F / (rhoarea) and rho = P/(rT)
785	! But first linearly interpolate mass flux to mid-layers
786	if (.not.fast) then
787	do l=1,nlayer-1
788	pw(1:ngrid,l)=0.5*(flxw(1:ngrid,l)+flxw(1:ngrid,l+1))
789	enddo
790	pw(1:ngrid,nlayer)=0.5*flxw(1:ngrid,nlayer) ! since flxw(nlayer+1)=0
791	do l=1,nlayer
792	pw(1:ngrid,l)=(pw(1:ngrid,l)rpt(1:ngrid,l)) / &
793	(pplay(1:ngrid,l)*cell_area(1:ngrid))
794	enddo
795	! omega in Pa/s
796	do l=1,nlayer-1
797	omega(1:ngrid,l)=0.5*(flxw(1:ngrid,l)+flxw(1:ngrid,l+1))
798	enddo
799	omega(1:ngrid,nlayer)=0.5*flxw(1:ngrid,nlayer) ! since flxw(nlayer+1)=0
800	do l=1,nlayer
801	omega(1:ngrid,l)=g*omega(1:ngrid,l)/cell_area(1:ngrid)
802	enddo
803	endif
804
805	if (conservn2) then
806	write(,) 'conservn2 thermo'
807	call testconservmass(ngrid,nlayer,pplev(:,1),qsurf(:,1))
808	endif
809
810	! Compute variations of g with latitude (to do).
811	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
812	gzlat(:,:) = g
813
814	! Initialize microphysical diagnostics.
815	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
816	IF (callmufi) THEN
817	! Initialize intensive to extensive factor (kg_air/m3: X/kg_air --> X/m3).
818	int2ext(:,:) = (pplev(:,1:nlayer)-pplev(:,2:nlayer+1)) / gzlat(:,1:nlayer) / (zzlev(:,2:nlayer+1)-zzlev(:,1:nlayer))
819
820	! Initialize microphysics diagnostics arrays.
821	call inimufi_diag(ngrid,nlayer,nq,pq,int2ext)
822	ENDIF ! end callmufi
823
824	! --------------------------------------------------------
825	! II.1 Thermosphere
826	! --------------------------------------------------------
827
828	! ajout de la conduction depuis la thermosphere
829	IF (callconduct) THEN
830
831	call conduction (ngrid,nlayer,ptimestep, &
832	pplay,pt,zzlay,zzlev,zdtconduc,tsurf)
833	DO l=1,nlayer
834	DO ig=1,ngrid
835	pdt(ig,l)=pdt(ig,l)+ zdtconduc(ig,l)
836	ENDDO
837	ENDDO
838
839	ENDIF
840
841	! ajout de la viscosite moleculaire
842	IF (callmolvis) THEN
843	call molvis(ngrid,nlayer,ptimestep, &
844	pplay,pt,zzlay,zzlev, &
845	zdtconduc,pu,tsurf,zdumolvis)
846	call molvis(ngrid,nlayer,ptimestep, &
847	pplay,pt,zzlay,zzlev, &
848	zdtconduc,pv,tsurf,zdvmolvis)
849
850	DO l=1,nlayer
851	DO ig=1,ngrid
852	! pdt(ig,l)=pdt(ig,l)+ zdtconduc(ig,l)
853	pdv(ig,l)=pdv(ig,l)+zdvmolvis(ig,l)
854	pdu(ig,l)=pdu(ig,l)+zdumolvis(ig,l)
855	ENDDO
856	ENDDO
857	ENDIF
858
859	IF (callmoldiff) THEN
860	call moldiff_red(ngrid,nlayer,nq, &
861	pplay,pplev,pt,pdt,pq,pdq,ptimestep, &
862	zzlay,zdtconduc,zdqmoldiff)
863
864	DO l=1,nlayer
865	DO ig=1,ngrid
866	DO iq=1, nq
867	pdq(ig,l,iq)=pdq(ig,l,iq)+zdqmoldiff(ig,l,iq)
868	ENDDO
869	ENDDO
870	ENDDO
871	ENDIF
872
873	if (conservn2) then
874	write(,) 'conservn2 thermosphere'
875	call testconservmass(ngrid,nlayer,pplev(:,1),qsurf(:,1))
876	endif
877
878
879	!---------------------------------
880	! II.2 Compute radiative tendencies
881	!---------------------------------
882	! Saving qsurf to compute paleo flux condensation/sublimation
883	DO iq=1, nq
884	DO ig=1,ngrid
885	IF (qsurf(ig,iq).lt.0.) then
886	qsurf(ig,iq)=0.
887	ENDIF
888	qsurf1(ig,iq)=qsurf(ig,iq)
889	ENDDO
890	ENDDO
891
892
893	! Compute local stellar zenith angles
894	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
895	fract = 0
896	if (diurnal) then
897	ztim1=SIN(declin)
898	ztim2=COS(declin)COS(2.pi*(zday-.5))
899	ztim3=-COS(declin)SIN(2.pi*(zday-.5))
900
901	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
902	ztim1,ztim2,ztim3,mu0,fract)
903	else if(diurnal .eqv. .false.) then
904
905	call mucorr(ngrid,declin,latitude,mu0,fract,10000.,rad)
906	! WARNING: this function appears not to work in 1D
907
908	if ((ngrid.eq.1).and.(global1d)) then ! Fixed zenith angle 'szangle' in 1D simulations w/ globally-averaged sunlight.
909	mu0 = cos(pi*szangle/180.0)
910	fract= 1/(4*mu0) ! AF24: from pluto.old
911	endif
912
913	endif
914
915
916	! Pluto albedo /IT changes depending on surface ices (only in 3D)
917	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
918	if (ngrid.ne.1) then
919
920	!! Specific to change albedo of N2 so that Psurf
921	!! converges toward 1.4 Pa in "1989" seasons for Triton
922	!! converges toward 1.1 Pa in "2015" seasons for Pluto
923	if (convergeps) then
924	if (triton) then
925	! 1989 declination
926	if (declin180./pi.gt.-46..and.declin180./pi.lt.-45. &
927	.and.zday.gt.saveday+1000. &
928	.and.declin.lt.savedeclin) then
929	call planetwide_sumval(pplev(:,1)*cell_area(:)/totarea_planet,globave)
930	if (globave.gt.1.5) then
931	adjust=adjust+0.005
932	else if (globave.lt.1.3) then
933	adjust=adjust-0.005
934	endif
935	saveday=zday
936	endif
937	else
938	! Pluto : 2015 declination current epoch
939	if (declin180./pi.gt.50.and.declin180./pi.lt.51. &
940	.and.zday.gt.saveday+10000. &
941	.and.declin.gt.savedeclin) then
942	call planetwide_sumval(pplev(:,1)*cell_area(:)/totarea_planet,globave)
943	if (globave.gt.1.2) then
944	adjust=adjust+0.005
945	else if (globave.lt.1.) then
946	adjust=adjust-0.005
947	endif
948	saveday=zday
949	endif
950	endif
951	end if
952	end if ! if ngrid ne 1
953
954	call surfprop(ngrid,nq,fract,qsurf,tsurf, &
955	capcal,adjust,dist_star,flusurfold,ptimestep,zls,&
956	albedo,emis,therm_inertia)
957	! do i=2,ngrid
958	! albedo(i,:) = albedo(1,:)
959	! enddo
960	! AF24: TODO check albedo has been initialized here
961
962	if (firstcall.and.callsoil) then
963	! AF24 Originally in soil.F, but therm_inertia is modified by surfprop
964	! Additional checks: is the vertical discretization sufficient
965	! to resolve diurnal and annual waves?
966	do ig=1,ngrid
967	! extreme inertia for this column
968	inertia_min=minval(therm_inertia(ig,:))
969	inertia_max=maxval(therm_inertia(ig,:))
970	! diurnal and annual skin depth
971	diurnal_skin=(inertia_min/volcapa)*sqrt(daysec/pi)
972	annual_skin=(inertia_max/volcapa)sqrt(year_daydaysec/pi)
973	if (0.5*diurnal_skin<layer(1)) then
974	! one should have the fist layer be at least half of diurnal skin depth
975	write(,) "soil Error: grid point ig=",ig
976	write(,) " longitude=",longitude(ig)*(180./pi)
977	write(,) " latitude=",latitude(ig)*(180./pi)
978	write(,) " first soil layer depth ",layer(1)
979	write(,) " not small enough for a diurnal skin depth of ", &
980	diurnal_skin
981	write(,) " change soil layer distribution (comsoil_h.F90)"
982	call abort_physic("soil","change soil layer distribution (comsoil_h.F90)",1)
983	endif
984	if (2.*annual_skin>layer(nsoilmx)) then
985	! one should have the full soil be at least twice the diurnal skin depth
986	write(,) "soil Error: grid point ig=",ig
987	write(,) " longitude=",longitude(ig)*(180./pi)
988	write(,) " latitude=",latitude(ig)*(180./pi)
989	write(,) " total soil layer depth ",layer(nsoilmx)
990	write(,) " not large enough for an annual skin depth of ", &
991	annual_skin
992	write(,) " change soil layer distribution (comsoil_h.F90)"
993	call abort_physic("soil","change soil layer distribution (comsoil_h.F90)",1)
994	endif
995	enddo ! of do ig=1,ngrid
996
997	end if ! callsoil
998
999	if (callrad) then
1000	if( mod(icount-1,iradia).eq.0.or.lastcall) then
1001
1002	! Eclipse incoming sunlight !AF24: removed
1003
1004	!! call writediagfi(ngrid,"corrk_pre_dqsurf"," "," ",2,dqsurf(1:ngrid,igcm_h2o_gas))
1005	!! call writediagfi(ngrid,"corrk_pre_qsurf"," "," ",2,qsurf(1:ngrid,igcm_h2o_gas))
1006
1007
1008	if (corrk) then
1009
1010	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1011	! II.a Call correlated-k radiative transfer scheme
1012	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1013	if(kastprof)then
1014	print*,'kastprof should not = true here'
1015	call abort
1016	endif
1017
1018	! standard callcorrk
1019	if (oldplutocorrk) then
1020	call callcorrk_pluto(icount,ngrid,nlayer,pq,nq,qsurf, &
1021	albedo(:,1),emis,mu0,pplev,pplay,pt, &
1022	zzlay,zzlev,tsurf,fract,dist_star,dtau_aer, &
1023	zdtlw,zdtsw,fluxsurf_lw,fluxsurf_sw,fluxtop_lw, &
1024	fluxtop_sw,fluxtop_dn,reffrad,tau_col,ptime,pday, &
1025	firstcall,lastcall)
1026	albedo_equivalent(1:ngrid)=albedo(1:ngrid,1)
1027	fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)+ &
1028	fluxsurf_sw(1:ngrid)*(1.-albedo(1:ngrid,1))
1029	fluxabs_sw(1:ngrid)=fluxtop_dn(1:ngrid)-fluxtop_sw(1:ngrid)
1030	else
1031	muvar(1:ngrid,1:nlayer+1)=mugaz
1032	call callcorrk(ngrid,nlayer,pq,nq,qsurf, &
1033	albedo,albedo_equivalent,emis,mu0,pplev,pplay,pt, &
1034	zzlay,zzlev,tsurf,fract,dist_star,dtau_aer,muvar, &
1035	zdtlw,zdtsw,fluxsurf_lw,fluxsurf_sw, &
1036	fluxsurfabs_sw,fluxtop_lw, &
1037	fluxabs_sw,fluxtop_dn,OLR_nu,OSR_nu,GSR_nu, &
1038	int_dtaui,int_dtauv, &
1039	tau_col,firstcall,lastcall)
1040	! Radiative flux from the sky absorbed by the surface (W.m-2).
1041	GSR=0.0
1042	fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)+ &
1043	fluxsurfabs_sw(1:ngrid)
1044	endif ! oldplutocorrk
1045	!GG (feb2021): Option to "artificially" decrease the raditive time scale in
1046	!the deep atmosphere press > 0.1 bar. Suggested by MT.
1047	!! COEFF_RAD to be "tuned" to facilitate convergence of tendency
1048
1049	!coeff_rad=0. ! 0 values, it doesn't accelerate the convergence
1050	!coeff_rad=0.5
1051	!coeff_rad=1.
1052	!do l=1, nlayer
1053	! do ig=1,ngrid
1054	! if(pplay(ig,l).ge.1.d4) then
1055	! zdtsw(ig,l)=zdtsw(ig,l)(pplay(ig,l)/1.d4)*coeff_rad
1056	! zdtlw(ig,l)=zdtlw(ig,l)(pplay(ig,l)/1.d4)*coeff_rad
1057	! endif
1058	! enddo
1059	!enddo
1060
1061	! AF24: removed CLFvarying Option
1062
1063
1064	!if(noradsurf)then ! no lower surface; SW flux just disappears
1065	! GSR = SUM(fluxsurf_sw(1:ngrid)*cell_area(1:ngrid))/totarea
1066	! fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)
1067	! print*,'SW lost in deep atmosphere = ',GSR,' W m^-2'
1068	!endif
1069
1070	! Net atmospheric radiative heating rate (K.s-1)
1071	dtrad(1:ngrid,1:nlayer)=zdtsw(1:ngrid,1:nlayer)+zdtlw(1:ngrid,1:nlayer)
1072
1073	! Late initialization of the Ice Spectral Albedo. We needed the visible bands to do that !
1074	if (firstcall .and. albedo_spectral_mode) then
1075	call spectral_albedo_calc(albedo_snow_SPECTV)
1076	endif
1077
1078	else
1079	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1080	! II.b Atmosphere has no radiative effect
1081	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1082	fluxtop_dn(1:ngrid) = fract(1:ngrid)mu0(1:ngrid)Fat1AU/dist_star**2
1083	if(ngrid.eq.1)then ! / by 4 globally in 1D case...
1084	fluxtop_dn(1) = fract(1)Fat1AU/dist_star*2/2.0
1085	endif
1086	fluxsurf_sw(1:ngrid) = fluxtop_dn(1:ngrid)
1087	print*,'------------WARNING---WARNING------------' ! by MT2015.
1088	print*,'You are in corrk=false mode, '
1089	print*,'and the surface albedo is taken equal to the first visible spectral value'
1090
1091	albedo_equivalent(1:ngrid)=albedo(1:ngrid,1)
1092	fluxsurfabs_sw(1:ngrid) = fluxtop_dn(1:ngrid)*(1.-albedo(1:ngrid,1))
1093	fluxabs_sw(1:ngrid)=fluxsurfabs_sw(1:ngrid)
1094	fluxrad_sky(1:ngrid) = fluxsurfabs_sw(1:ngrid)
1095	fluxtop_lw(1:ngrid) = emis(1:ngrid)sigmatsurf(1:ngrid)**4
1096
1097	dtrad(1:ngrid,1:nlayer)=0.0 ! no atmospheric radiative heating
1098
1099	endif ! end of corrk
1100
1101	endif ! of if(mod(icount-1,iradia).eq.0)
1102
1103
1104	! Transformation of the radiative tendencies
1105	! ------------------------------------------
1106	zplanck(1:ngrid)=tsurf(1:ngrid)*tsurf(1:ngrid)
1107	zplanck(1:ngrid)=emis(1:ngrid)sigmazplanck(1:ngrid)*zplanck(1:ngrid)
1108	fluxrad(1:ngrid)=fluxrad_sky(1:ngrid)-zplanck(1:ngrid)
1109	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+dtrad(1:ngrid,1:nlayer)
1110
1111	! Test of energy conservation
1112	!----------------------------
1113	if(enertest)then
1114	call planetwide_sumval(cppmassarea(:,:)zdtsw(:,:)/totarea_planet,dEtotSW)
1115	call planetwide_sumval(cppmassarea(:,:)zdtlw(:,:)/totarea_planet,dEtotLW)
1116	!call planetwide_sumval(fluxsurf_sw(:)(1.-albedo_equivalent(:))cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
1117	call planetwide_sumval(fluxsurfabs_sw(:)*cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
1118	call planetwide_sumval((fluxsurf_lw(:)emis(:)-zplanck(:))cell_area(:)/totarea_planet,dEtotsLW)
1119	dEzRadsw(:,:)=cppmass(:,:)zdtsw(:,:)
1120	dEzRadlw(:,:)=cppmass(:,:)zdtlw(:,:)
1121	if (is_master) then
1122	print*,'---------------------------------------------------------------'
1123	print*,'In corrk SW atmospheric heating =',dEtotSW,' W m-2'
1124	print*,'In corrk LW atmospheric heating =',dEtotLW,' W m-2'
1125	print*,'atmospheric net rad heating (SW+LW) =',dEtotLW+dEtotSW,' W m-2'
1126	print*,'In corrk SW surface heating =',dEtotsSW,' W m-2'
1127	print*,'In corrk LW surface heating =',dEtotsLW,' W m-2'
1128	print*,'surface net rad heating (SW+LW) =',dEtotsLW+dEtotsSW,' W m-2'
1129	endif
1130	endif ! end of 'enertest'
1131
1132	endif ! of if (callrad)
1133
1134	!! call writediagfi(ngrid,"vdifc_pre_dqsurf"," "," ",2,dqsurf(1:ngrid,igcm_h2o_gas))
1135	!! call writediagfi(ngrid,"vdifc_pre_qsurf"," "," ",2,qsurf(1:ngrid,igcm_h2o_gas))
1136
1137	if (conservn2) then
1138	write(,) 'conservn2 radiat'
1139	call testconservmass(ngrid,nlayer,pplev(:,1),qsurf(:,1))
1140	endif
1141
1142	! --------------------------------------------
1143	! III. Vertical diffusion (turbulent mixing) :
1144	! --------------------------------------------
1145
1146	if (calldifv) then
1147
1148	zflubid(1:ngrid)=fluxrad(1:ngrid)+fluxgrd(1:ngrid)
1149
1150	if (oldplutovdifc) then
1151	zdum1(:,:) = 0.
1152	zdum2(:,:) = 0.
1153	zdh(:,:)=pdt(:,:)/zpopsk(:,:)
1154
1155	! Calling vdif (Martian version WITH N2 condensation)
1156	CALL vdifc_pluto(ngrid,nlayer,nq,zpopsk, &
1157	ptimestep,capcal,lwrite, &
1158	pplay,pplev,zzlay,zzlev,z0, &
1159	pu,pv,zh,pq,pt,tsurf,emis,qsurf, &
1160	zdum1,zdum2,zdh,pdq,pdt,zflubid, &
1161	zdudif,zdvdif,zdhdif,zdtsdif,q2, &
1162	zdqdif,zdqsdif,qsat_ch4,qsat_ch4_l1) !,zq1temp_ch4,qsat_ch4)
1163
1164	zdtdif(1:ngrid,1:nlayer)=zdhdif(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer)
1165
1166	bcond=1./tcond1p4Pa
1167	acond=r/lw_n2
1168
1169	! JL12 the following if test is temporarily there to allow us to compare the old vdifc with turbdiff.
1170	else if (UseTurbDiff) then
1171
1172	call turbdiff(ngrid,nlayer,nq, &
1173	ptimestep,capcal, &
1174	pplay,pplev,zzlay,zzlev,z0, &
1175	pu,pv,pt,zpopsk,pq,tsurf,emis,qsurf, &
1176	pdt,pdq,zflubid, &
1177	zdudif,zdvdif,zdtdif,zdtsdif, &
1178	sensibFlux,q2,zdqdif,zdqevap,zdqsdif, &
1179	taux,tauy)
1180
1181	else ! if .not. (oldplutovdifc) .and. (UseTurbDiff)
1182
1183	zdh(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
1184
1185	call vdifc(ngrid,nlayer,nq,zpopsk, &
1186	ptimestep,capcal,lwrite, &
1187	pplay,pplev,zzlay,zzlev,z0, &
1188	pu,pv,zh,pq,tsurf,emis,qsurf, &
1189	zdh,pdq,zflubid, &
1190	zdudif,zdvdif,zdhdif,zdtsdif, &
1191	sensibFlux,q2,zdqdif,zdqsdif)
1192
1193	zdtdif(1:ngrid,1:nlayer)=zdhdif(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
1194	zdqevap(1:ngrid,1:nlayer)=0.
1195
1196	end if !end of 'UseTurbDiff'
1197
1198	zdtsurf(1:ngrid)=zdtsurf(1:ngrid)+zdtsdif(1:ngrid)
1199
1200	!!! this is always done, except for turbulence-resolving simulations
1201	if (.not. turb_resolved) then
1202	pdv(1:ngrid,1:nlayer)=pdv(1:ngrid,1:nlayer)+zdvdif(1:ngrid,1:nlayer)
1203	pdu(1:ngrid,1:nlayer)=pdu(1:ngrid,1:nlayer)+zdudif(1:ngrid,1:nlayer)
1204	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+zdtdif(1:ngrid,1:nlayer)
1205	endif
1206
1207	if (tracer) then
1208	pdq(1:ngrid,1:nlayer,1:nq)=pdq(1:ngrid,1:nlayer,1:nq)+ zdqdif(1:ngrid,1:nlayer,1:nq)
1209	dqsurf(1:ngrid,1:nq)=dqsurf(1:ngrid,1:nq) + zdqsdif(1:ngrid,1:nq)
1210	end if ! of if (tracer)
1211
1212	! test energy conservation
1213	!-------------------------
1214	if(enertest)then
1215
1216	dEzdiff(:,:)=cppmass(:,:)zdtdif(:,:)
1217	do ig = 1, ngrid
1218	dEdiff(ig)=SUM(dEzdiff (ig,:))+ sensibFlux(ig)! subtract flux to the ground
1219	dEzdiff(ig,1)= dEzdiff(ig,1)+ sensibFlux(ig)! subtract flux to the ground
1220	enddo
1221
1222	call planetwide_sumval(dEdiff(:)*cell_area(:)/totarea_planet,dEtot)
1223	dEdiffs(:)=capcal(:)*zdtsdif(:)-zflubid(:)-sensibFlux(:)
1224	call planetwide_sumval(dEdiffs(:)*cell_area(:)/totarea_planet,dEtots)
1225	call planetwide_sumval(sensibFlux(:)*cell_area(:)/totarea_planet,AtmToSurf_TurbFlux)
1226
1227	if (is_master) then
1228
1229	if (UseTurbDiff) then
1230	print*,'In TurbDiff sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
1231	print*,'In TurbDiff non-cons atm nrj change =',dEtot,' W m-2'
1232	print*,'In TurbDiff (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1233	else
1234	print*,'In vdifc sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
1235	print*,'In vdifc non-cons atm nrj change =',dEtot,' W m-2'
1236	print*,'In vdifc (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1237	end if
1238	endif ! end of 'is_master'
1239
1240	! JL12 : note that the black body radiative flux emitted by the surface has been updated by the implicit scheme but not given back elsewhere.
1241	endif ! end of 'enertest'
1242
1243	else ! calldifv
1244
1245	ztim1=4.sigmaptimestep
1246	DO ig=1,ngrid
1247	ztim2=ztim1emis(ig)tsurf(ig)**3
1248	z1=capcal(ig)*tsurf(ig)+ &
1249	ztim2tsurf(ig)+ (fluxrad(ig)+fluxgrd(ig))ptimestep
1250	z2= capcal(ig)+ztim2
1251	zdtsurf(ig)=(z1/z2 - tsurf(ig))/ptimestep
1252
1253	! for output:
1254	!dplanck(ig)=4.stephanptimestepemis(ig)tsurf(ig)**3
1255	ENDDO
1256
1257	! if(.not.newtonian)then
1258	!zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + (fluxrad(1:ngrid) + fluxgrd(1:ngrid))/capcal(1:ngrid)
1259
1260	! ------------------------------------------------------------------
1261	! Methane surface sublimation and condensation in fast model (nogcm)
1262	! ------------------------------------------------------------------
1263	if ((methane).and.(fast).and.condmetsurf) THEN
1264
1265	call ch4surf(ngrid,nlayer,nq,ptimestep,capcal, &
1266	tsurf,zdtsurf,pplev,pdpsrf,pq,pdq,qsurf,dqsurf, &
1267	zdqch4fast,zdqsch4fast)
1268
1269	dqsurf(1:ngrid,igcm_ch4_ice)= dqsurf(1:ngrid,igcm_ch4_ice) + &
1270	zdqsch4fast(1:ngrid)
1271	pdq(1:ngrid,1,igcm_ch4_gas)= pdq(1:ngrid,1,igcm_ch4_gas) + &
1272	zdqch4fast(1:ngrid)
1273	zdtsurf(1:ngrid)=zdtsurf(1:ngrid)+lw_ch4*zdqsch4fast(1:ngrid)/capcal(1:ngrid)
1274	end if
1275	! ------------------------------------------------------------------
1276	! CO surface sublimation and condensation in fast model (nogcm)
1277	! ------------------------------------------------------------------
1278	if ((carbox).and.(fast).and.condcosurf) THEN
1279
1280	call cosurf(ngrid,nlayer,nq,ptimestep, &
1281	tsurf,pplev,pdpsrf,pq,pdq,qsurf,dqsurf, &
1282	zdqcofast,zdqscofast)
1283
1284	dqsurf(1:ngrid,igcm_co_ice)= dqsurf(1:ngrid,igcm_co_ice) + &
1285	zdqscofast(1:ngrid)
1286	pdq(1:ngrid,1,igcm_co_gas)= pdq(1:ngrid,1,igcm_co_gas) + &
1287	zdqcofast(1:ngrid)
1288	zdtsurf(1:ngrid)=zdtsurf(1:ngrid)+lw_co*zdqscofast(1:ngrid)/capcal(1:ngrid)
1289	end if
1290
1291
1292	endif ! end of 'calldifv'
1293
1294	if (conservn2) then
1295	write(,) 'conservn2 calldifv'
1296	call testconservmass(ngrid,nlayer,pplev(:,1),qsurf(:,1)+ &
1297	dqsurf(:,1)*ptimestep)
1298	endif
1299	if (methane.and.conservch4) then
1300	write(,) 'conservch4 calldifv'
1301	if (fast) then
1302	call testconservfast(ngrid,nlayer,nq,pq(:,1,igcm_ch4_gas),pdq(:,1,igcm_ch4_gas), &
1303	qsurf(:,igcm_ch4_ice),dqsurf(:,igcm_ch4_ice), &
1304	ptimestep,pplev,zdqch4fast,zdqsch4fast,'CH4',' vdifc ')
1305	else
1306	call testconserv(ngrid,nlayer,nq,pq,pdq,qsurf,dqsurf, &
1307	igcm_ch4_gas,igcm_ch4_ice, &
1308	ptimestep,pplev,zdqdif,zdqsdif,'CH4',' vdifc ')
1309	endif
1310	endif
1311
1312	!-------------------
1313	! IV. Convection :
1314	!-------------------
1315
1316	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1317	! IV.a Dry convective adjustment :
1318	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1319
1320	if(calladj) then
1321
1322	zdh(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
1323	zduadj(1:ngrid,1:nlayer)=0.0
1324	zdvadj(1:ngrid,1:nlayer)=0.0
1325	zdhadj(1:ngrid,1:nlayer)=0.0
1326
1327
1328	call convadj(ngrid,nlayer,nq,ptimestep, &
1329	pplay,pplev,zpopsk, &
1330	pu,pv,zh,pq, &
1331	pdu,pdv,zdh,pdq, &
1332	zduadj,zdvadj,zdhadj, &
1333	zdqadj)
1334
1335	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zduadj(1:ngrid,1:nlayer)
1336	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvadj(1:ngrid,1:nlayer)
1337	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer)
1338	zdtadj(1:ngrid,1:nlayer) = zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
1339
1340	if(tracer) then
1341	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqadj(1:ngrid,1:nlayer,1:nq)
1342	end if
1343
1344	! Test energy conservation
1345	if(enertest)then
1346	call planetwide_sumval(cppmassarea(:,:)zdtadj(:,:)/totarea_planet,dEtot)
1347	if (is_master) print*,'In convadj atmospheric energy change =',dEtot,' W m-2'
1348	endif
1349
1350	! ! Test water conservation !AF24: removed
1351
1352	endif ! end of 'calladj'
1353
1354	!-----------------------------------------------
1355	! V. Nitrogen condensation-sublimation :
1356	!-----------------------------------------------
1357
1358	if (n2cond) then
1359
1360	if (.not.tracer) then
1361	print*,'We need a N2 ice tracer to condense N2'
1362	call abort
1363	endif
1364
1365	call condense_n2(ngrid,nlayer,nq,ptimestep, &
1366	capcal,pplay,pplev,tsurf,pt, &
1367	pphi,pdt,pdu,pdv,zdtsurf,pu,pv,pq,pdq, &
1368	qsurf(1,igcm_n2),albedo,emis, &
1369	zdtc,zdtsurfc,pdpsrf,zduc,zdvc, &
1370	zdqc,zdqsc(1,igcm_n2))
1371
1372	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtc(1:ngrid,1:nlayer)
1373	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer)+zdvc(1:ngrid,1:nlayer)
1374	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer)+zduc(1:ngrid,1:nlayer)
1375	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfc(1:ngrid)
1376
1377	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+ zdqc(1:ngrid,1:nlayer,1:nq)
1378	dqsurf(1:ngrid,igcm_n2) = dqsurf(1:ngrid,igcm_n2) + zdqsc(1:ngrid,igcm_n2)
1379
1380	!! call writediagfi(ngrid,"condense_n2_post_dqsurf"," "," ",2,dqsurf(1:ngrid,igcm_h2o_gas))
1381	!! call writediagfi(ngrid,"condense_n2_post_qsurf"," "," ",2,qsurf(1:ngrid,igcm_h2o_gas))
1382
1383	! test energy conservation
1384	if(enertest)then
1385	call planetwide_sumval(cppmassarea(:,:)zdtc(:,:)/totarea_planet,dEtot)
1386	call planetwide_sumval(capcal(:)zdtsurfc(:)cell_area(:)/totarea_planet,dEtots)
1387	if (is_master) then
1388	print*,'In n2cloud atmospheric energy change =',dEtot,' W m-2'
1389	print*,'In n2cloud surface energy change =',dEtots,' W m-2'
1390	endif
1391	endif
1392
1393	endif ! end of 'n2cond'
1394
1395	if (conservn2) then
1396	write(,) 'conservn2 n2cond'
1397	call testconservmass(ngrid,nlayer,pplev(:,1)+ &
1398	pdpsrf(:)ptimestep,qsurf(:,1)+dqsurf(:,1)ptimestep)
1399	endif
1400	if (methane.and.conservch4) then
1401	write(,) 'conservch4 n2cond'
1402	if (fast) then
1403	call testconservfast(ngrid,nlayer,nq,pq(:,1,igcm_ch4_gas),pdq(:,1,igcm_ch4_gas), &
1404	qsurf(:,igcm_ch4_ice),dqsurf(:,igcm_ch4_ice), &
1405	ptimestep,pplev,zdqch4fast,zdqsch4fast,'CH4',' n2cond')
1406	else
1407	call testconserv(ngrid,nlayer,nq,pq,pdq,qsurf,dqsurf, &
1408	igcm_ch4_gas,igcm_ch4_ice, &
1409	ptimestep,pplev,zdqc,zdqsc,'CH4',' n2cond')
1410	endif
1411	endif
1412
1413	!---------------------------------------------
1414	! VI. Specific parameterizations for tracers
1415	!---------------------------------------------
1416
1417	if (tracer) then
1418
1419	! ---------------------------------------
1420	! Methane ice condensation in the atmosphere
1421	! ----------------------------------------
1422	rice_ch4(:,:)=0 ! initialization needed for callsedim
1423	zdqch4cloud(:,:,:)=0.
1424	if ((methane).and.(metcloud).and.(.not.fast)) THEN
1425	call ch4cloud(ngrid,nlayer,ptimestep, &
1426	pplev,pplay,pdpsrf,zzlev,zzlay, pt,pdt, &
1427	pq,pdq,zdqch4cloud,zdqsch4cloud,zdtch4cloud, &
1428	nq,rice_ch4)
1429
1430	DO l=1,nlayer
1431	DO ig=1,ngrid
1432	pdq(ig,l,igcm_ch4_gas)=pdq(ig,l,igcm_ch4_gas)+ &
1433	zdqch4cloud(ig,l,igcm_ch4_gas)
1434	pdq(ig,l,igcm_ch4_ice)=pdq(ig,l,igcm_ch4_ice)+ &
1435	zdqch4cloud(ig,l,igcm_ch4_ice)
1436	ENDDO
1437	ENDDO
1438
1439	! Increment methane ice surface tracer tendency
1440	DO ig=1,ngrid
1441	dqsurf(ig,igcm_ch4_ice)=dqsurf(ig,igcm_ch4_ice)+ &
1442	zdqsch4cloud(ig,igcm_ch4_ice)
1443	ENDDO
1444
1445	! update temperature tendancy
1446	DO ig=1,ngrid
1447	DO l=1,nlayer
1448	pdt(ig,l)=pdt(ig,l)+zdtch4cloud(ig,l)
1449	ENDDO
1450	ENDDO
1451	end if
1452
1453	! ---------------------------------------
1454	! CO ice condensation in the atmosphere
1455	! ----------------------------------------
1456	zdqcocloud(:,:,:)=0.
1457	IF ((carbox).and.(monoxcloud).and.(.not.fast)) THEN
1458	call cocloud(ngrid,nlayer,ptimestep, &
1459	pplev,pplay,pdpsrf,zzlev,zzlay, pt,pdt, &
1460	pq,pdq,zdqcocloud,zdqscocloud,zdtcocloud, &
1461	nq,rice_co,qsurf(1,igcm_n2),dqsurf(1,igcm_n2))
1462
1463	DO l=1,nlayer
1464	DO ig=1,ngrid
1465	pdq(ig,l,igcm_co_gas)=pdq(ig,l,igcm_co_gas)+ &
1466	zdqcocloud(ig,l,igcm_co_gas)
1467	pdq(ig,l,igcm_co_ice)=pdq(ig,l,igcm_co_ice)+ &
1468	zdqcocloud(ig,l,igcm_co_ice)
1469	ENDDO
1470	ENDDO
1471
1472	! Increment CO ice surface tracer tendency
1473	DO ig=1,ngrid
1474	dqsurf(ig,igcm_co_ice)=dqsurf(ig,igcm_co_ice)+ &
1475	zdqscocloud(ig,igcm_co_ice)
1476	ENDDO
1477
1478	! update temperature tendancy
1479	DO ig=1,ngrid
1480	DO l=1,nlayer
1481	pdt(ig,l)=pdt(ig,l)+zdtcocloud(ig,l)
1482	ENDDO
1483	ENDDO
1484	ELSE
1485	rice_co(:,:)=0 ! initialization needed for callsedim
1486	END IF ! of IF (carbox)
1487
1488	! ----------------------------------------
1489	! VI.1. Microphysics / Aerosol particles
1490	! ----------------------------------------
1491	! Call of microphysics
1492	IF (callmufi) THEN
1493
1494	! Production for microphysics
1495	IF (call_haze_prod_pCH4) THEN
1496	zdqphot_prec(:,:) = 0.
1497	zdqphot_ch4(:,:) = 0.
1498	pdqmufi_prod(:,:,:) = 0.
1499	call hazecloud(ngrid,nlayer,nq,ptimestep,zday, &
1500	pplay,pplev,pq,pdq,dist_star,mu0,zfluxuv,pdqmufi_prod, &
1501	zdqphot_prec,zdqphot_ch4,zdqconv_prec,declin)
1502	pdq(:,:,:) = pdq(:,:,:) + pdqmufi_prod(:,:,:) ! Should be updated
1503	ENDIF ! end call_haze_prod_pCH4
1504
1505	pdqmufi(:,:,:) = 0.
1506
1507	call calmufi(ptimestep,pplev,zzlev,pplay,zzlay,gzlat,pt,pq,pdq,pdqmufi_prod,pdqmufi)
1508
1509	pdq(:,:,:) = pdq(:,:,:) + pdqmufi(:,:,:)
1510
1511	ELSE
1512	IF (haze) THEN
1513	zdqphot_prec(:,:) = 0.
1514	zdqphot_ch4(:,:) = 0.
1515	zdqhaze(:,:,:) = 0.
1516	! Forcing to a fixed haze profile if haze_proffix
1517	if (haze_proffix.and.i_haze.gt.0.) then
1518	call haze_prof(ngrid,nlayer,zzlay,pplay,pt, &
1519	reffrad,profmmr)
1520	zdqhaze(:,:,i_haze)=(profmmr(:,:)-pq(:,:,igcm_haze))/ptimestep
1521	else
1522	call hazecloud(ngrid,nlayer,nq,ptimestep,zday, &
1523	pplay,pplev,pq,pdq,dist_star,mu0,zfluxuv,zdqhaze, &
1524	zdqphot_prec,zdqphot_ch4,zdqconv_prec,declin)
1525	endif
1526	pdq(:,:,:) = pdq(:,:,:) + zdqhaze(:,:,:) ! Should be updated
1527	ENDIF ! end haze
1528
1529	IF (fast.and.fasthaze) THEN
1530	call prodhaze(ngrid,nlayer,nq,ptimestep,pplev,pq,pdq,dist_star, &
1531	mu0,declin,zdqprodhaze,zdqsprodhaze,gradflux,fluxbot, &
1532	fluxlym_sol_bot,fluxlym_ipm_bot,flym_sol,flym_ipm)
1533	DO ig=1,ngrid
1534	pdq(ig,1,igcm_ch4_gas)=pdq(ig,1,igcm_ch4_gas)+ &
1535	zdqprodhaze(ig,igcm_ch4_gas)
1536	pdq(ig,1,igcm_prec_haze)=pdq(ig,1,igcm_prec_haze)+ &
1537	zdqprodhaze(ig,igcm_prec_haze)
1538	pdq(ig,1,igcm_haze)=abs(pdq(ig,1,igcm_haze)+ &
1539	zdqprodhaze(ig,igcm_haze))
1540	qsurf(ig,igcm_haze)= qsurf(ig,igcm_haze)+ &
1541	zdqsprodhaze(ig)*ptimestep
1542	ENDDO
1543	ENDIF ! end fast.and.fasthaze
1544
1545	! Sedimentation.
1546	if (sedimentation) then
1547	zdqsed(1:ngrid,1:nlayer,1:nq) = 0.0
1548	zdqssed(1:ngrid,1:nq) = 0.0
1549	if (oldplutosedim)then
1550	call callsedim_pluto(ngrid,nlayer,ptimestep, &
1551	pplev,zzlev,pt,pdt,rice_ch4,rice_co, &
1552	pq,pdq,zdqsed,zdqssed,nq,pphi)
1553	else
1554	call callsedim(ngrid,nlayer,ptimestep, &
1555	pplev,zzlev,pt,pdt,pq,pdq, &
1556	zdqsed,zdqssed,nq,pphi)
1557	endif
1558	! Whether it falls as rain or snow depends only on the surface temperature
1559	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqsed(1:ngrid,1:nlayer,1:nq)
1560	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqssed(1:ngrid,1:nq)
1561	end if ! end of 'sedimentation'
1562
1563	ENDIF ! end callmufi
1564
1565	! ---------------
1566	! VI.2. Updates
1567	! ---------------
1568
1569	! Updating Atmospheric Mass and Tracers budgets.
1570	if(mass_redistrib) then
1571
1572	zdmassmr(1:ngrid,1:nlayer) = mass(1:ngrid,1:nlayer) * 0
1573	! ( zdqevap(1:ngrid,1:nlayer) &
1574	! ! + zdqrain(1:ngrid,1:nlayer,igcm_h2o_gas) &
1575	! ! + dqmoist(1:ngrid,1:nlayer,igcm_h2o_gas) &
1576	! + dqvaplscale(1:ngrid,1:nlayer) )
1577
1578	do ig = 1, ngrid
1579	zdmassmr_col(ig)=SUM(zdmassmr(ig,1:nlayer))
1580	enddo
1581
1582	! call writediagfi(ngrid,"mass_evap","mass gain"," ",3,zdmassmr)
1583	! call writediagfi(ngrid,"mass_evap_col","mass gain col"," ",2,zdmassmr_col)
1584	call writediagfi(ngrid,"mass","mass","kg/m2",3,mass)
1585
1586	call mass_redistribution(ngrid,nlayer,nq,ptimestep, &
1587	capcal,pplay,pplev,pt,tsurf,pq,qsurf, &
1588	pu,pv,pdt,zdtsurf,pdq,pdu,pdv,zdmassmr, &
1589	zdtmr,zdtsurfmr,zdpsrfmr,zdumr,zdvmr,zdqmr,zdqsurfmr)
1590
1591	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqmr(1:ngrid,1:nlayer,1:nq)
1592	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqsurfmr(1:ngrid,1:nq)
1593	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdtmr(1:ngrid,1:nlayer)
1594	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zdumr(1:ngrid,1:nlayer)
1595	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvmr(1:ngrid,1:nlayer)
1596	pdpsrf(1:ngrid) = pdpsrf(1:ngrid) + zdpsrfmr(1:ngrid)
1597	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfmr(1:ngrid)
1598
1599	endif
1600
1601	! call writediagfi(ngrid,"mass_redistribution_post_dqsurf"," "," ",2,dqsurf(1:ngrid,igcm_h2o_gas))
1602
1603	! -----------------------------
1604	! VI.3. Surface Tracer Update
1605	! -----------------------------
1606
1607	qsurf(1:ngrid,1:nq) = qsurf(1:ngrid,1:nq) + ptimestep*dqsurf(1:ngrid,1:nq)
1608
1609	endif! end of if 'tracer'
1610
1611	if (conservn2) then
1612	write(,) 'conservn2 tracer'
1613	call testconservmass(ngrid,nlayer,pplev(:,1)+ &
1614	pdpsrf(:)*ptimestep,qsurf(:,1))
1615	endif
1616
1617	DO ig=1,ngrid
1618	flusurf(ig,igcm_n2)=(qsurf(ig,igcm_n2)- &
1619	qsurf1(ig,igcm_n2))/ptimestep
1620	flusurfold(ig,igcm_n2)=flusurf(ig,igcm_n2)
1621	if (methane) then
1622	flusurf(ig,igcm_ch4_ice)=(qsurf(ig,igcm_ch4_ice)- &
1623	qsurf1(ig,igcm_ch4_ice))/ptimestep
1624	flusurfold(ig,igcm_ch4_ice)=flusurf(ig,igcm_ch4_ice)
1625	endif
1626	if (carbox) then
1627	flusurf(ig,igcm_co_ice)=(qsurf(ig,igcm_co_ice)- &
1628	qsurf1(ig,igcm_co_ice))/ptimestep
1629	!flusurfold(ig,igcm_co_ice)=flusurf(ig,igcm_co_ice)
1630	endif
1631	ENDDO
1632
1633	!! Special source of haze particle !
1634	! todo: should be placed in haze and use tendency of n2 instead of flusurf
1635	IF (source_haze) THEN
1636	write(,) "Source haze not supported yet."
1637	stop
1638	! call hazesource(ngrid,nlayer,nq,ptimestep, &
1639	! pplev,flusurf,mu0,zdq_source)
1640
1641	DO iq=1, nq
1642	DO l=1,nlayer
1643	DO ig=1,ngrid
1644	pdq(ig,l,iq)=pdq(ig,l,iq)+zdq_source(ig,l,iq)
1645	ENDDO
1646	ENDDO
1647	ENDDO
1648	ENDIF
1649
1650	!------------------------------------------------
1651	! VII. Surface and sub-surface soil temperature
1652	!------------------------------------------------
1653
1654	! For diagnostic
1655	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1656	if (.not.fast) then
1657	DO ig=1,ngrid
1658	rho(ig,1) = pplay(ig,1)/(r*pt(ig,1))
1659	sensiblehf1(ig)=rho(ig,1)cpp(0.4/log(zzlay(ig,1)/z0))*2 &
1660	(pu(ig,1)pu(ig,1)+pv(ig,1)pv(ig,1))*0.5 &
1661	(tsurf(ig)-pt(ig,1))
1662	if (calldifv) then
1663	sensiblehf2(ig)=zflubid(ig)-capcal(ig)*zdtsdif(ig)
1664	end if
1665	ENDDO
1666	endif
1667
1668
1669	! VII.1 Increment surface temperature
1670	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1671	tsurf(1:ngrid)=tsurf(1:ngrid)+ptimestep*zdtsurf(1:ngrid)
1672
1673	! Prevent surface (.e.g. non volatile ch4) to exceed max temperature
1674	! Lellouch et al., 2000,2011
1675	IF (tsurfmax) THEN
1676	DO ig=1,ngrid
1677	if (albedo_equivalent(ig).gt.albmin_ch4.and. &
1678	qsurf(ig,igcm_n2).eq.0.) then
1679	tsurf(ig)=min(tsurf(ig),54.)
1680	endif
1681	ENDDO
1682	ENDIF
1683
1684	! VII.2 Compute soil temperatures and subsurface heat flux.
1685	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1686	if (callsoil) then
1687	call soil(ngrid,nsoilmx,.false.,lastcall,therm_inertia, &
1688	ptimestep,tsurf,tsoil,capcal,fluxgrd)
1689	endif
1690
1691	! ! For output :
1692	! tidat_out(:,:)=0.
1693	! DO l=1,nsoilmx
1694	! tidat_out(:,l)=therm_inertia(:,l)
1695	! ENDDO
1696
1697	! Test energy conservation
1698	if(enertest)then
1699	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf(:)/totarea_planet,dEtots)
1700	if (is_master) print*,'Surface energy change =',dEtots,' W m-2'
1701	endif
1702
1703
1704
1705	! VII.3 multiply tendencies of cond/subli for paleo loop only in the
1706	! last Pluto year of the simulation
1707	! Year day must be adapted in the startfi for each object
1708	! Paleo uses year_day to calculate the annual mean tendancies
1709	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1710	IF (paleo) then
1711	if (zday.gt.day_ini+ptime0+nday-year_day) then
1712	DO iq=1,nq
1713	DO ig=1,ngrid
1714	qsurfyear(ig,iq)=qsurfyear(ig,iq)+ &
1715	(qsurf(ig,iq)-qsurf1(ig,iq)) !kg m-2 !ptimestep
1716	ENDDO
1717	ENDDO
1718	endif
1719	endif
1720
1721	! VII.4 Glacial flow at each timestep glastep or at lastcall
1722	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1723	IF (fast.and.glaflow) THEN
1724	if ((mod(zday-day_ini-ptime0,glastep)).lt.1. &
1725	.or.lastcall) then
1726	IF (lastcall) then
1727	dstep=mod(zday-day_ini-ptime0,glastep)*daysec
1728	else
1729	dstep=glastep*daysec
1730	endif
1731	zdqflow(:,:)=qsurf(:,:)
1732	IF (paleo) then
1733	call spreadglacier_paleo(ngrid,nq,qsurf, &
1734	phisfinew,dstep,tsurf)
1735	else
1736	call spreadglacier_simple(ngrid,nq,qsurf,dstep)
1737	endif
1738	zdqflow(:,:)=(zdqflow(:,:)-qsurf(:,:))/dstep
1739
1740	if (conservn2) then
1741	write(,) 'conservn2 glaflow'
1742	call testconservmass(ngrid,nlayer,pplev(:,1)+ &
1743	pdpsrf(:)*ptimestep,qsurf(:,1))
1744	endif
1745
1746	endif
1747	ENDIF
1748
1749	!---------------------------------------------------
1750	! VIII. Perform diagnostics and write output files
1751	!---------------------------------------------------
1752
1753	! Note : For output only: the actual model integration is performed in the dynamics.
1754
1755
1756	! Temperature, zonal and meridional winds.
1757	zt(1:ngrid,1:nlayer) = pt(1:ngrid,1:nlayer) + pdt(1:ngrid,1:nlayer)*ptimestep
1758	zu(1:ngrid,1:nlayer) = pu(1:ngrid,1:nlayer) + pdu(1:ngrid,1:nlayer)*ptimestep
1759	zv(1:ngrid,1:nlayer) = pv(1:ngrid,1:nlayer) + pdv(1:ngrid,1:nlayer)*ptimestep
1760
1761	!! Recast thermal plume vertical velocity array for outputs
1762	!! AF24: removed
1763
1764	! Diagnostic.
1765	zdtdyn(1:ngrid,1:nlayer) = (pt(1:ngrid,1:nlayer)-ztprevious(1:ngrid,1:nlayer)) / ptimestep
1766	ztprevious(1:ngrid,1:nlayer) = zt(1:ngrid,1:nlayer)
1767
1768	zdudyn(1:ngrid,1:nlayer) = (pu(1:ngrid,1:nlayer)-zuprevious(1:ngrid,1:nlayer)) / ptimestep
1769	zuprevious(1:ngrid,1:nlayer) = zu(1:ngrid,1:nlayer)
1770
1771	if(firstcall)then
1772	zdtdyn(1:ngrid,1:nlayer)=0.0
1773	zdudyn(1:ngrid,1:nlayer)=0.0
1774	endif
1775
1776	! Dynamical heating diagnostic
1777	fluxdyn(:)=0.0
1778	if (.not.fast) then
1779	do ig=1,ngrid
1780	fluxdyn(ig)= SUM(zdtdyn(ig,:) mass(ig,:))cpp
1781	enddo
1782	endif
1783
1784	! Tracers.
1785	zq(1:ngrid,1:nlayer,1:nq) = pq(1:ngrid,1:nlayer,1:nq) + pdq(1:ngrid,1:nlayer,1:nq)*ptimestep
1786
1787	! Surface pressure.
1788	ps(1:ngrid) = pplev(1:ngrid,1) + pdpsrf(1:ngrid)*ptimestep
1789	call planetwide_sumval(ps(:)*cell_area(:)/totarea_planet,globave)
1790
1791	! pressure density !pluto specific
1792	IF (.not.fast) then !
1793	do ig=1,ngrid
1794	do l=1,nlayer
1795	zplev(ig,l)=pplev(ig,l)/pplev(ig,1)*ps(ig)
1796	zplay(ig,l)=pplay(ig,l)/pplev(ig,1)*ps(ig)
1797	rho(ig,l) = zplay(ig,l)/(r*zt(ig,l))
1798	enddo
1799	zplev(ig,nlayer+1)=pplev(ig,nlayer+1)/pplev(ig,1)*ps(ig)
1800	enddo
1801	ENDIF
1802
1803
1804	! Surface and soil temperature information
1805	call planetwide_sumval(cell_area(:)*tsurf(:)/totarea_planet,Ts1)
1806	call planetwide_minval(tsurf(:),Ts2)
1807	call planetwide_maxval(tsurf(:),Ts3)
1808	if(callsoil)then
1809	TsS = SUM(cell_area(:)*tsoil(:,nsoilmx))/totarea ! mean temperature at bottom soil layer
1810	if (is_master) then
1811	print*,' ave[Tsurf] min[Tsurf] max[Tsurf] ave[Tdeep]'
1812	print*,Ts1,Ts2,Ts3,TsS
1813	end if
1814	else
1815	if (is_master) then
1816	print*,' ave[Tsurf] min[Tsurf] max[Tsurf]'
1817	print*,Ts1,Ts2,Ts3
1818	endif
1819	end if
1820
1821
1822	! Check the energy balance of the simulation during the run
1823	if(corrk)then
1824
1825	call planetwide_sumval(cell_area(:)*fluxtop_dn(:)/totarea_planet,ISR)
1826	call planetwide_sumval(cell_area(:)*fluxabs_sw(:)/totarea_planet,ASR)
1827	call planetwide_sumval(cell_area(:)*fluxtop_lw(:)/totarea_planet,OLR)
1828	call planetwide_sumval(cell_area(:)*fluxgrd(:)/totarea_planet,GND)
1829	call planetwide_sumval(cell_area(:)*fluxdyn(:)/totarea_planet,DYN)
1830	do ig=1,ngrid
1831	if(fluxtop_dn(ig).lt.0.0)then
1832	print*,'fluxtop_dn has gone crazy'
1833	print*,'fluxtop_dn=',fluxtop_dn(ig)
1834	print*,'tau_col=',tau_col(ig)
1835	print*,'dtau_aer=',dtau_aer(ig,:,:)
1836	print*,'temp= ',pt(ig,:)
1837	print*,'pplay= ',pplay(ig,:)
1838	call abort
1839	endif
1840	end do
1841
1842	if(ngrid.eq.1)then
1843	DYN=0.0
1844	endif
1845
1846	if (is_master) then
1847	print*,' ISR ASR OLR GND DYN [W m^-2]'
1848	print*, ISR,ASR,OLR,GND,DYN
1849	endif
1850
1851	if(enertest .and. is_master)then
1852	print*,'SW flux/heating difference SW++ - ASR = ',dEtotSW+dEtotsSW-ASR,' W m-2'
1853	print*,'LW flux/heating difference LW++ - OLR = ',dEtotLW+dEtotsLW+OLR,' W m-2'
1854	print*,'LW energy balance LW++ + ASR = ',dEtotLW+dEtotsLW+ASR,' W m-2'
1855	endif
1856
1857	if(meanOLR .and. is_master)then
1858	if((ngrid.gt.1) .or. (mod(icount-1,ecritphy).eq.0))then
1859	! to record global radiative balance
1860	open(92,file="rad_bal.out",form='formatted',position='append')
1861	write(92,*) zday,ISR,ASR,OLR
1862	close(92)
1863	open(93,file="tem_bal.out",form='formatted',position='append')
1864	if(callsoil)then
1865	write(93,*) zday,Ts1,Ts2,Ts3,TsS
1866	else
1867	write(93,*) zday,Ts1,Ts2,Ts3
1868	endif
1869	close(93)
1870	endif
1871	endif
1872
1873	endif ! end of 'corrk'
1874
1875
1876	! Diagnostic to test radiative-convective timescales in code.
1877	if(testradtimes)then
1878	open(38,file="tau_phys.out",form='formatted',position='append')
1879	ig=1
1880	do l=1,nlayer
1881	write(38,*) -1./pdt(ig,l),pt(ig,l),pplay(ig,l)
1882	enddo
1883	close(38)
1884	print*,'As testradtimes enabled,'
1885	print*,'exiting physics on first call'
1886	call abort
1887	endif
1888
1889
1890	! Compute column amounts (kg m-2) if tracers are enabled.
1891	if(tracer)then
1892	qcol(1:ngrid,1:nq)=0.0
1893	do iq=1,nq
1894	do ig=1,ngrid
1895	qcol(ig,iq) = SUM( zq(ig,1:nlayer,iq) * mass(ig,1:nlayer))
1896	enddo
1897	enddo
1898
1899	endif ! end of 'tracer'
1900
1901	if (methane) then
1902	IF (fast) then ! zq is the mixing ratio supposingly mixed in all atmosphere
1903	DO ig=1,ngrid
1904	vmr_ch4(ig)=zq(ig,1,igcm_ch4_gas)* &
1905	mmol(igcm_n2)/mmol(igcm_ch4_gas)*100.
1906	ENDDO
1907	ELSE
1908	DO ig=1,ngrid
1909	! compute vmr methane
1910	vmr_ch4(ig)=qcol(ig,igcm_ch4_gas)* &
1911	g/ps(ig)mmol(igcm_n2)/mmol(igcm_ch4_gas)100.
1912	! compute density methane
1913	DO l=1,nlayer
1914	zrho_ch4(ig,l)=zq(ig,l,igcm_ch4_gas)*rho(ig,l)
1915	ENDDO
1916	ENDDO
1917	ENDIF
1918	endif
1919
1920	if (carbox) then
1921	IF (fast) then
1922	DO ig=1,ngrid
1923	vmr_co(ig)=zq(ig,1,igcm_co_gas)* &
1924	mmol(igcm_n2)/mmol(igcm_co_gas)*100.
1925	ENDDO
1926	ELSE
1927	DO ig=1,ngrid
1928	! compute vmr CO
1929	vmr_co(ig)=qcol(ig,igcm_co_gas)* &
1930	g/ps(ig)mmol(igcm_n2)/mmol(igcm_co_gas)100.
1931	! compute density CO
1932	DO l=1,nlayer
1933	zrho_co(ig,l)=zq(ig,l,igcm_co_gas)*rho(ig,l)
1934	ENDDO
1935	ENDDO
1936	ENDIF
1937	endif
1938
1939	zrho_haze(:,:)=0.
1940	zdqrho_photprec(:,:)=0.
1941	IF (haze.and.optichaze) then
1942	DO ig=1,ngrid
1943	DO l=1,nlayer
1944	zrho_haze(ig,l)=zq(ig,l,igcm_haze)*rho(ig,l)
1945	zdqrho_photprec(ig,l)=zdqphot_prec(ig,l)*rho(ig,l)
1946	ENDDO
1947	ENDDO
1948	ENDIF
1949
1950	IF (fasthaze) then
1951	DO ig=1,ngrid
1952	qcol(ig,igcm_haze)=zq(ig,1,igcm_haze)*pplev(ig,1)/g
1953	qcol(ig,igcm_prec_haze)=zq(ig,1,igcm_prec_haze)*pplev(ig,1)/g
1954	ENDDO
1955	ENDIF
1956
1957	! Info about Ls, declin...
1958	IF (fast) THEN
1959	if (is_master) write(,),'Ls=',zls180./pi,' dec=',declin180./pi
1960	if (is_master) write(,),'zday=',zday,' ps=',globave
1961	IF (lastcall) then
1962	if (is_master) write(,),'lastcall'
1963	ENDIF
1964	ELSE
1965	if (is_master) write(,),'Ls=',zls180./pi,'decli=',declin180./pi,'zday=',zday
1966	ENDIF
1967
1968	lecttsoil=0 ! default value for lecttsoil
1969	call getin_p("lecttsoil",lecttsoil)
1970	IF (lastcall.and.(ngrid.EQ.1).and.(lecttsoil.eq.1)) THEN
1971	! save tsoil temperature profile for 1D profile
1972	OPEN(13,file='proftsoil.out',form='formatted')
1973	DO i=1,nsoilmx
1974	write(13,*) tsoil(1,i)
1975	ENDDO
1976	CLOSE(13)
1977	ENDIF
1978
1979	if (is_master) print,'--> Ls =',zls180./pi
1980
1981	if(lastcall) then
1982	IF (grid_type==unstructured) THEN !IF DYNAMICO
1983	! DYNAMICO: no need to add a dynamics time step to ztime_fin
1984	ztime_fin = ptime
1985	ELSE ! LMDZ
1986	ztime_fin = ptime + ptimestep/(float(iphysiq)*daysec)
1987	ENDIF ! of IF (grid_type==unstructured)
1988	!! Update surface ice distribution to iterate to steady state if requested
1989	!! AF24: removed
1990
1991	! endif
1992	if (paleo) then
1993	! time range for tendencies of ice flux qsurfyear
1994	zdt_tot=year_day ! Last year of simulation
1995
1996	masslost(:)=0.
1997	massacc(:)=0.
1998
1999	DO ig=1,ngrid
2000	! update new reservoir of ice on the surface
2001	DO iq=1,nq
2002	! kg/m2 to be sublimed or condensed during paleoyears
2003	qsurfyear(ig,iq)=qsurfyear(ig,iq)* &
2004	paleoyears365.25/(zdt_totdaysec/86400.)
2005
2006	! special case if we sublime the entire reservoir
2007	!! AF: TODO : fix following lines (real_area), using line below:
2008	! call planetwide_sumval((-qsurfyear(:,iq)-qsurf(:,iq))*cell_area(:),masslost)
2009
2010	! IF (-qsurfyear(ig,iq).gt.qsurf(ig,iq)) THEN
2011	! masslost(iq)=masslost(iq)+real_area(ig)* &
2012	! (-qsurfyear(ig,iq)-qsurf(ig,iq))
2013	! qsurfyear(ig,iq)=-qsurf(ig,iq)
2014	! ENDIF
2015
2016	! IF (qsurfyear(ig,iq).gt.0.) THEN
2017	! massacc(iq)=massacc(iq)+real_area(ig)*qsurfyear(ig,iq)
2018	! ENDIF
2019
2020
2021	ENDDO
2022	ENDDO
2023
2024	DO ig=1,ngrid
2025	DO iq=1,nq
2026	qsurfpal(ig,iq)=qsurf(ig,iq)+qsurfyear(ig,iq)
2027	IF (qsurfyear(ig,iq).gt.0.) THEN
2028	qsurfpal(ig,iq)=qsurfpal(ig,iq)- &
2029	qsurfyear(ig,iq)*masslost(iq)/massacc(iq)
2030	ENDIF
2031	ENDDO
2032	ENDDO
2033	! Finally ensure conservation of qsurf
2034	DO iq=1,nq
2035	call planetwide_sumval(qsurf(:,iq)*cell_area(:)/totarea_planet,globaveice(iq))
2036	call planetwide_sumval(qsurfpal(:,iq)*cell_area(:)/totarea_planet,globavenewice(iq))
2037	IF (globavenewice(iq).gt.0.) THEN
2038	qsurfpal(:,iq)=qsurfpal(:,iq)* &
2039	globaveice(iq)/globavenewice(iq)
2040	ENDIF
2041	ENDDO
2042
2043	! update new geopotential depending on the ice reservoir
2044	phisfipal(:)=phisfinew(:)+qsurfpal(:,igcm_n2)*g/1000.
2045	!phisfipal(ig)=phisfi(ig)
2046
2047	if (kbo.or.triton) then ! case of Triton : we do not change the orbital parameters
2048	pdaypal=pday ! no increment of pdaypal to keep same evolution of the subsolar point
2049	eccpal=1.-periastr/((periastr+apoastr)/2.) !no change of ecc
2050	peri_daypal=peri_day ! no change
2051	oblipal=obliquit ! no change
2052	tpalnew=tpal
2053	adjustnew=adjust
2054
2055	else ! Pluto
2056	! update new pday and tpal (Myr) to be set in startfi controle
2057	pdaypal=int(day_ini+paleoyears*365.25/6.3872)
2058	tpalnew=tpal+paleoyears*1.e-6 ! Myrs
2059
2060	! update new N2 ice adjustment (not tested yet on Pluto)
2061	adjustnew=adjust
2062
2063	! update milankovitch parameters : obliquity,Lsp,ecc
2064	call calcmilank(tpalnew,oblipal,peri_daypal,eccpal)
2065	!peri_daypal=peri_day
2066	!eccpal=0.009
2067	endif
2068
2069	if (is_master) write(,) "Paleo peri=",peri_daypal," tpal=",tpalnew
2070	if (is_master) write(,) "Paleo eccpal=",eccpal," tpal=",tpalnew
2071
2072	!----------------------------------------------------------------------
2073	! Writing NetCDF file "RESTARTFI" at the end of the run
2074	!----------------------------------------------------------------------
2075	! Note: 'restartfi' is stored just before dynamics are stored
2076	! in 'restart'. Between now and the writing of 'restart',
2077	! there will have been the itau=itau+1 instruction and
2078	! a reset of 'time' (lastacll = .true. when itau+1= itaufin)
2079	! thus we store for time=time+dtvr
2080
2081	! create restartfi
2082	if (ngrid.ne.1) then
2083	print*, "physdem1pal not yet implemented"
2084	stop
2085	!TODO: import this routine from pluto.old
2086	! call physdem1pal("restartfi.nc",long,lati,nsoilmx,nq, &
2087	! ptimestep,pdaypal, &
2088	! ztime_fin,tsurf,tsoil,emis,q2,qsurfpal, &
2089	! cell_area,albedodat,therm_inertia,zmea,zstd,zsig, &
2090	! zgam,zthe,oblipal,eccpal,tpalnew,adjustnew,phisfipal, &
2091	! peri_daypal)
2092	endif
2093	else ! 'paleo'
2094
2095	if (ngrid.ne.1) then
2096	write(,)'PHYSIQ: for physdem ztime_fin =',ztime_fin
2097
2098	call physdem1("restartfi.nc",nsoilmx,ngrid,nlayer,nq, &
2099	ptimestep,ztime_fin,tsurf, &
2100	tsoil,therm_inertia,emis,albedo,q2,qsurf)
2101	endif
2102
2103	endif ! end of 'paleo'
2104	endif ! end of 'lastcall'
2105
2106	!------------------------------------------------------------------------------
2107	! OUTPUT in netcdf file "DIAGFI.NC",
2108	! containing any variable for diagnostic
2109	!
2110	! Note 1 : output with period "ecritphy", set in "run.def"
2111	! Note 2 : writediagfi can also be called from any other subroutine
2112	! for any variable, but its preferable to keep all the
2113	! calls in one place ...
2114	!------------------------------------------------------------------------------
2115
2116	!-------- General 1D variables
2117
2118	call write_output("Ls","solar longitude","deg",zls*180./pi)
2119	! call write_output("Lss","sub solar longitude","deg",zlss*180./pi)
2120	call write_output("RA","right ascension","deg",right_ascen*180./pi)
2121	call write_output("Declin","solar declination","deg",declin*180./pi)
2122	call write_output("dist_star","dist_star","AU",dist_star)
2123	call write_output("globave","surf press","Pa",globave)
2124
2125	!-------- General 2D variables
2126
2127	call write_output("tsurf","Surface temperature","K",tsurf)
2128	call write_output("ps","Surface pressure","Pa",ps)
2129	call write_output("emis","Emissivity","",emis)
2130	!if (grid_type == regular_lonlat) then
2131	! call write_output("area","Mesh area","m2", &
2132	! cell_area_for_lonlat_outputs)
2133	! else ! unstructured grid (e.g. dynamico)
2134	! call write_output("area","Mesh area","m2",cell_area)
2135	!endif
2136
2137	if (fast) then
2138	call write_output("fluxrad","fluxrad","W m-2",fluxrad)
2139	call write_output("fluxgrd","fluxgrd","W m-2",fluxgrd)
2140	! call write_output("dplanck","dplanck","W.s m-2 K-1",dplanck)
2141	! "soil" variables
2142	call write_output("capcal","capcal","W.s m-2 K-1",capcal)
2143	call write_output("tsoil","tsoil","K",tsoil)
2144	call write_output("therm_inertia","therm_inertia","S.I.",therm_inertia)
2145	endif
2146
2147	! Total energy balance diagnostics
2148	if(callrad)then
2149	call write_output("ALB","Surface albedo"," ",albedo_equivalent)
2150	call write_output("ASR","absorbed stellar rad.","W m-2",fluxabs_sw)
2151	call write_output("ISR","incoming stellar rad.","W m-2",fluxtop_dn)
2152	call write_output("OLR","outgoing longwave rad.","W m-2",fluxtop_lw)
2153	call write_output("GND","heat flux from ground","W m-2",fluxgrd)
2154	if (.not.fast) then
2155	call write_output("DYN","dynamical heat input","W m-2",fluxdyn)
2156	endif
2157	endif ! end of 'callrad'
2158
2159	!-------- General 3D variables
2160
2161	if (.not.fast) then
2162	if (check_physics_outputs) then
2163	! Check the validity of updated fields at the end of the physics step
2164	call check_physics_fields("physiq:", zt, zu, zv, pplev, zq)
2165	endif
2166
2167	call write_output("zzlay","Midlayer altitude", "m",zzlay(:,:))
2168	call write_output("zzlev","Interlayer altitude", "m",zzlev(:,1:nlayer))
2169	!call write_output('pphi','Geopotential',' ',pphi)
2170
2171	call write_output("temperature","temperature","K",zt)
2172	call write_output("teta","potential temperature","K",zh)
2173	call write_output("u","Zonal wind","m.s-1",zu)
2174	call write_output("v","Meridional wind","m.s-1",zv)
2175	call write_output("w","Vertical wind","m.s-1",pw)
2176	call write_output("p","Pressure","Pa",pplay)
2177	call write_output("omega","omega","Pa/s",omega)
2178	endif
2179
2180	if(enertest) then
2181	if (calldifv) then
2182	call write_output("q2","turbulent kinetic energy","J.kg^-1",q2)
2183	call write_output("sensibFlux","sensible heat flux","w.m^-2",sensibFlux)
2184	endif
2185	if (corrk) then
2186	call write_output("dEzradsw","radiative heating","w.m^-2",dEzRadsw)
2187	call write_output("dEzradlw","radiative heating","w.m^-2",dEzRadlw)
2188	endif
2189	endif ! end of 'enertest'
2190
2191	! Diagnostics of optical thickness
2192	! Warning this is exp(-tau), I let you postproc with -log to have tau itself
2193	!do nw=1,L_NSPECTV
2194	! write(str2,'(i2.2)') nw
2195	! call write_output('dtauv'//str2,'Layer optical thickness attenuation in VI band '//str2,'',int_dtauv(:,nlayer:1:-1,nw))
2196	!enddo
2197	!do nw=1,L_NSPECTI
2198	! write(str2,'(i2.2)') nw
2199	! call write_output('dtaui'//str2,'Layer optical thickness attenuation in IR band '//str2,'',int_dtaui(:,nlayer:1:-1,nw))
2200	!enddo
2201
2202	! Temporary inclusions for heating diagnostics.
2203	if (.not.fast) then
2204	call write_output("zdtsw","SW heating","K s-1",zdtsw)
2205	call write_output("zdtlw","LW heating","K s-1",zdtlw)
2206	call write_output("dtrad","radiative heating","K s-1",dtrad)
2207	call write_output("zdtdyn","Dyn. heating","K s-1",zdtdyn)
2208	call write_output("zdudyn","Dyn. U","m s-2",zdudyn)
2209	call write_output("zdtconduc","tendancy conduc","K s-1",zdtconduc)
2210	call write_output("zdumolvis","tendancy molvis","m s-1",zdumolvis)
2211	call write_output("zdvmolvis","tendancy molvis","m s-1",zdvmolvis)
2212	call write_output("zdtdif","tendancy T diff","K s-1",zdtdif)
2213	call write_output("zdtsdif","tendancy Ts diff","K s-1",zdtsdif)
2214	call write_output("zdtadj","tendancy T adj","K s-1",zdtadj)
2215	endif
2216
2217	! Output tracers.
2218	if (tracer) then
2219
2220	do iq=1,nq
2221	if (.not.fast) then
2222	call write_output(noms(iq),noms(iq),'kg/kg',zq(:,:,iq))
2223	endif
2224	call write_output(trim(noms(iq))//'_col',trim(noms(iq))//'_col', &
2225	'kg m^-2',qcol(:,iq) )
2226	call write_output(trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
2227	'kg m^-2',qsurf(:,iq) )
2228	enddo ! end of 'nq' loop
2229
2230	! N2 cycle
2231	call write_output('n2_iceflux','n2_iceflux',"kg m^-2 s^-1",flusurf(:,igcm_n2) )
2232	if (.not.fast) then
2233	call write_output("zdtc","tendancy T cond N2","K s-1",zdtc)
2234	call write_output("zdtsurfc","tendancy Ts cond N2","K s-1",zdtsurfc)
2235	call write_output("zduc","tendancy U cond N2","m s-1",zduc)
2236	call write_output("zdvc","tendancy V cond N2","m s-1",zdvc)
2237	call write_output("zdqc_n2","tendancy tracer cond N2","kg kg-1 s-1",zdqc(:,:,1))
2238	call write_output("zdqsc_n2","tendancy tracer surf cond N2","kg kg-1 s-1",zdqsc(:,1))
2239	call write_output("zdqdif_n2","tendancy tracer diff","kg kg-1 s-1",zdqdif(:,:,1))
2240	call write_output("zdqsdif_n2","tendancy tracer surf diff","kg kg-1 s-1",zdqsdif(:,1))
2241	call write_output("zdqadj_n2","tendancy tracer adj","K s-1",zdqadj(:,:,1))
2242	endif
2243
2244	! CH4 cycle
2245	if (methane) then
2246
2247	call write_output('ch4_iceflux','ch4_iceflux',&
2248	"kg m^-2 s^-1",flusurf(:,igcm_ch4_ice) )
2249	call write_output("vmr_ch4","vmr_ch4","%",vmr_ch4)
2250
2251	if (.not.fast) then
2252	call write_output("zrho_ch4","zrho_ch4","kg.m-3",zrho_ch4(:,:))
2253	!call write_output("rice_ch4","ch4 ice mass mean radius","m",rice_ch4)
2254	!call write_output("zq1temp_ch4"," "," ",zq1temp_ch4)
2255	!call write_output("qsat_ch4"," "," ",qsat_ch4)
2256	!call write_output("qsat_ch4_l1"," "," ",qsat_ch4_l1)
2257
2258	! 3D Tendancies
2259	call write_output("zdqcn2_ch4","zdq condn2 ch4","",&
2260	zdqc(:,:,igcm_ch4_gas))
2261	call write_output("zdqdif_ch4","zdqdif ch4","",&
2262	zdqdif(:,:,igcm_ch4_gas))
2263	call write_output("zdqsdif_ch4_ice","zdqsdif ch4","",&
2264	zdqsdif(:,igcm_ch4_ice))
2265	call write_output("zdqadj_ch4","zdqadj ch4","",&
2266	zdqadj(:,:,igcm_ch4_gas))
2267	endif
2268
2269	if (sedimentation) then
2270	call write_output("zdqsed_ch4","zdqsed ch4","",&
2271	zdqsed(:,:,igcm_ch4_gas))
2272	call write_output("zdqssed_ch4","zdqssed ch4","",&
2273	zdqssed(:,igcm_ch4_gas))
2274	endif
2275
2276	if (metcloud.and.(.not.fast)) then
2277	call write_output("zdtch4cloud","ch4 cloud","K s-1",&
2278	zdtch4cloud)
2279	call write_output("zdqch4cloud_gas","ch4 cloud","kg kg-1 s-1",&
2280	zdqch4cloud(:,:,igcm_ch4_gas))
2281	call write_output("zdqch4cloud_ice","ch4 cloud","kg kg-1 s-1",&
2282	zdqch4cloud(:,:,igcm_ch4_ice))
2283	endif
2284
2285	endif
2286
2287	! CO cycle
2288	if (carbox) then
2289	! call write_output("zdtcocloud","tendancy T cocloud","K",zdtcocloud)
2290	call write_output('co_iceflux','co_iceflux',&
2291	"kg m^-2 s^-1",flusurf(:,igcm_co_ice) )
2292	call write_output("vmr_co","vmr_co","%",vmr_co)
2293	if (.not.fast) THEN
2294	call write_output("zrho_co","zrho_co","kg.m-3",zrho_co(:,:))
2295	endif
2296	endif
2297
2298	! Haze
2299	if (haze) then
2300
2301	if (haze_radproffix)then
2302	call write_output('haze_reff','haze_reff','m',reffrad(:,:,1))
2303	end if
2304	!call write_output("zrho_haze","zrho_haze","kg.m-3",zrho_haze(:,:))
2305	!call write_output("zdqhaze_col","zdqhaze col","kg/m2/s",&
2306	! zdqhaze_col(:))
2307
2308	! 3D Tendencies
2309	call write_output("zdqrho_photprec","zdqrho_photprec",&
2310	"kg.m-3.s-1",zdqrho_photprec(:,:))
2311	call write_output("zdqphot_prec","zdqphot_prec","",&
2312	zdqphot_prec(:,:))
2313	call write_output("zdqhaze_ch4","zdqhaze_ch4","",&
2314	zdqhaze(:,:,igcm_ch4_gas))
2315	call write_output("zdqhaze_prec","zdqhaze_prec","",&
2316	zdqhaze(:,:,igcm_prec_haze))
2317	call write_output("zdqphot_ch4","zdqphot_ch4","",&
2318	zdqphot_ch4(:,:))
2319	call write_output("zdqconv_prec","zdqconv_prec","",&
2320	zdqconv_prec(:,:))
2321
2322	if (igcm_haze.ne.0) then
2323	call write_output("zdqhaze_haze","zdqhaze_haze","",&
2324	zdqhaze(:,:,igcm_haze))
2325	if (sedimentation) then
2326	call write_output("zdqssed_haze","zdqssed haze",&
2327	"kg/m2/s",zdqssed(:,igcm_haze))
2328	endif
2329	endif
2330
2331	if (optichaze) then
2332	call write_output("tau_col",&
2333	"Total aerosol optical depth","opacity",tau_col)
2334	endif
2335
2336	endif ! end haze
2337
2338	if (callmufi) then
2339	! Tracers:
2340	call write_output("m0as","Density number of spherical aerosols","m-3",zq(:,:,micro_indx(1))*int2ext(:,:))
2341	call write_output("m3as","Volume of spherical aerosols","m3.m-3",zq(:,:,micro_indx(2))*int2ext(:,:))
2342	call write_output("m0af","Density number of fractal aerosols","m-3",zq(:,:,micro_indx(3))*int2ext(:,:))
2343	call write_output("m3af","Volume of fractal aerosols","m3.m-3",zq(:,:,micro_indx(4))*int2ext(:,:))
2344
2345	! Diagnostics:
2346	call write_output("rcs","Characteristic radius of spherical aerosols","m",mp2m_rc_sph(:,:))
2347	call write_output("rcf","Characteristic radius of fractal aerosols","m",mp2m_rc_fra(:,:))
2348
2349	if (optichaze) then
2350	call write_output("tau_col",&
2351	"Total aerosol optical depth","opacity",tau_col)
2352	endif ! end optichaze
2353	endif ! end callmufi
2354
2355	endif ! end of 'tracer'
2356
2357	! Output spectrum.
2358	if(specOLR.and.corrk)then
2359	call writediagspecIR(ngrid,"OLR3D","OLR(lon,lat,band)","W/m^2/cm^-1",3,OLR_nu)
2360	call writediagspecVI(ngrid,"OSR3D","OSR(lon,lat,band)","W/m^2/cm^-1",3,OSR_nu)
2361	call writediagspecVI(ngrid,"GSR3D","GSR(lon,lat,band)","W/m^2/cm^-1",3,GSR_nu)
2362	endif
2363
2364	! XIOS outputs
2365	#ifdef CPP_XIOS
2366	! Send fields to XIOS: (NB these fields must also be defined as
2367	! <field id="..." /> in context_lmdz_physics.xml to be correctly used)
2368	CALL send_xios_field("controle",tab_cntrl_mod,1)
2369
2370	CALL send_xios_field("ap",ap,1)
2371	CALL send_xios_field("bp",bp,1)
2372	CALL send_xios_field("aps",aps,1)
2373	CALL send_xios_field("bps",bps,1)
2374
2375	if (lastcall.and.is_omp_master) then
2376	write(,) "physiq: call xios_context_finalize"
2377	call xios_context_finalize
2378	endif
2379	#endif
2380
2381	if (check_physics_outputs) then
2382	! Check the validity of updated fields at the end of the physics step
2383	call check_physics_fields("end of physiq:", zt, zu, zv, pplev, zq)
2384	endif
2385
2386	icount=icount+1
2387
2388	end subroutine physiq
2389
2390	end module physiq_mod

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